Sat, 26 Aug 2017

Package BradleyTerry2 updated to version 1.0-7 with previous version 1.0-6 dated 2015-02-08

Title: Bradley-Terry Models
Description: Specify and fit the Bradley-Terry model, including structured versions in which the parameters are related to explanatory variables through a linear predictor and versions with contest-specific effects, such as a home advantage.
Author: Heather Turner and David Firth
Maintainer: Heather Turner <ht@heatherturner.net>

Diff between BradleyTerry2 versions 1.0-6 dated 2015-02-08 and 1.0-7 dated 2017-08-26

 BradleyTerry2-1.0-6/BradleyTerry2/R/model.frame.BTm.R         |only
 BradleyTerry2-1.0-6/BradleyTerry2/README                      |only
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 BradleyTerry2-1.0-7/BradleyTerry2/DESCRIPTION                 |   16 
 BradleyTerry2-1.0-7/BradleyTerry2/MD5                         |  147 ++--
 BradleyTerry2-1.0-7/BradleyTerry2/NAMESPACE                   |   99 ++
 BradleyTerry2-1.0-7/BradleyTerry2/R/BTabilities.R             |   91 ++
 BradleyTerry2-1.0-7/BradleyTerry2/R/BTm.R                     |  185 +++++
 BradleyTerry2-1.0-7/BradleyTerry2/R/BTm.setup.R               |    4 
 BradleyTerry2-1.0-7/BradleyTerry2/R/CEMS.R                    |only
 BradleyTerry2-1.0-7/BradleyTerry2/R/Diff.R                    |   12 
 BradleyTerry2-1.0-7/BradleyTerry2/R/GenDavidson.R             |  184 +++++
 BradleyTerry2-1.0-7/BradleyTerry2/R/add1.BTm.R                |   82 ++
 BradleyTerry2-1.0-7/BradleyTerry2/R/anova.BTm.R               |   89 ++
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 BradleyTerry2-1.0-7/BradleyTerry2/R/football.R                |only
 BradleyTerry2-1.0-7/BradleyTerry2/R/formula.BTm.R             |    1 
 BradleyTerry2-1.0-7/BradleyTerry2/R/glmmPQL.R                 |  124 +++
 BradleyTerry2-1.0-7/BradleyTerry2/R/glmmPQL.control.R         |   46 +
 BradleyTerry2-1.0-7/BradleyTerry2/R/glmmPQL.fit.R             |   43 -
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 BradleyTerry2-1.0-7/BradleyTerry2/R/model.matrix.BTm.R        |    6 
 BradleyTerry2-1.0-7/BradleyTerry2/R/plotProportions.R         |  178 +++++
 BradleyTerry2-1.0-7/BradleyTerry2/R/predict.BTglmmPQL.R       |  116 ++-
 BradleyTerry2-1.0-7/BradleyTerry2/R/predict.BTm.R             |  173 +++++
 BradleyTerry2-1.0-7/BradleyTerry2/R/print.BTglmmPQL.R         |    2 
 BradleyTerry2-1.0-7/BradleyTerry2/R/print.BTm.R               |    1 
 BradleyTerry2-1.0-7/BradleyTerry2/R/print.summary.glmmPQL.R   |    5 
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 BradleyTerry2-1.0-7/BradleyTerry2/inst/NEWS                   |   36 +
 BradleyTerry2-1.0-7/BradleyTerry2/inst/doc/BradleyTerry.R     |    1 
 BradleyTerry2-1.0-7/BradleyTerry2/inst/doc/BradleyTerry.pdf   |binary
 BradleyTerry2-1.0-7/BradleyTerry2/man/BTabilities.Rd          |   88 +-
 BradleyTerry2-1.0-7/BradleyTerry2/man/BTm.Rd                  |  331 +++++-----
 BradleyTerry2-1.0-7/BradleyTerry2/man/CEMS.Rd                 |  173 ++---
 BradleyTerry2-1.0-7/BradleyTerry2/man/GenDavidson.Rd          |  187 ++---
 BradleyTerry2-1.0-7/BradleyTerry2/man/add1.BTm.Rd             |  112 +--
 BradleyTerry2-1.0-7/BradleyTerry2/man/anova.BTm.Rd            |  112 +--
 BradleyTerry2-1.0-7/BradleyTerry2/man/baseball.Rd             |   70 +-
 BradleyTerry2-1.0-7/BradleyTerry2/man/chameleons.Rd           |  122 +--
 BradleyTerry2-1.0-7/BradleyTerry2/man/citations.Rd            |   66 +
 BradleyTerry2-1.0-7/BradleyTerry2/man/countsToBinomial.Rd     |   37 -
 BradleyTerry2-1.0-7/BradleyTerry2/man/flatlizards.Rd          |  185 ++---
 BradleyTerry2-1.0-7/BradleyTerry2/man/football.Rd             |   64 +
 BradleyTerry2-1.0-7/BradleyTerry2/man/glmmPQL.Rd              |  301 +++------
 BradleyTerry2-1.0-7/BradleyTerry2/man/glmmPQL.control.Rd      |   88 +-
 BradleyTerry2-1.0-7/BradleyTerry2/man/icehockey.Rd            |  101 +--
 BradleyTerry2-1.0-7/BradleyTerry2/man/plotProportions.Rd      |  228 +++---
 BradleyTerry2-1.0-7/BradleyTerry2/man/predict.BTglmmPQL.Rd    |  153 ++--
 BradleyTerry2-1.0-7/BradleyTerry2/man/predict.BTm.Rd          |  207 ++++--
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 BradleyTerry2-1.0-7/BradleyTerry2/man/sound.fields.Rd         |  115 +--
 BradleyTerry2-1.0-7/BradleyTerry2/man/springall.Rd            |   97 +-
 BradleyTerry2-1.0-7/BradleyTerry2/tests/BTabilities.R         |only
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 BradleyTerry2-1.0-7/BradleyTerry2/tests/add1.R                |    5 
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 BradleyTerry2-1.0-7/BradleyTerry2/tests/flatlizards.R         |   13 
 BradleyTerry2-1.0-7/BradleyTerry2/tests/flatlizards.Rout.save |   36 -
 BradleyTerry2-1.0-7/BradleyTerry2/tests/predict.R             |  102 ++-
 BradleyTerry2-1.0-7/BradleyTerry2/tests/predict.Rout.save     |  165 ++++
 90 files changed, 3375 insertions(+), 1709 deletions(-)

More information about BradleyTerry2 at CRAN
Permanent link

Package tensorflow updated to version 1.3.1 with previous version 1.3 dated 2017-07-27

Title: R Interface to 'TensorFlow'
Description: Interface to 'TensorFlow' <https://www.tensorflow.org/>, an open source software library for numerical computation using data flow graphs. Nodes in the graph represent mathematical operations, while the graph edges represent the multidimensional data arrays (tensors) communicated between them. The flexible architecture allows you to deploy computation to one or more 'CPUs' or 'GPUs' in a desktop, server, or mobile device with a single 'API'. 'TensorFlow' was originally developed by researchers and engineers working on the Google Brain Team within Google's Machine Intelligence research organization for the purposes of conducting machine learning and deep neural networks research, but the system is general enough to be applicable in a wide variety of other domains as well.
Author: JJ Allaire [aut, cre], RStudio [cph, fnd], Yuan Tang [aut, cph], Dirk Eddelbuettel [ctb, cph], Nick Golding [ctb, cph], Google Inc. [ctb, cph] (Examples and Tutorials)
Maintainer: JJ Allaire <jj@rstudio.com>

Diff between tensorflow versions 1.3 dated 2017-07-27 and 1.3.1 dated 2017-08-26

 DESCRIPTION               |   10 
 MD5                       |   22 -
 NAMESPACE                 |   12 
 R/flags.R                 |    6 
 R/help.R                  |  807 +---------------------------------------------
 R/install.R               |  106 ++++--
 R/package.R               |   10 
 R/reexports.R             |   25 +
 R/tensorboard.R           |  112 +++---
 man/install_tensorflow.Rd |   22 -
 man/reexports.Rd          |   14 
 man/tensorboard.Rd        |   24 -
 12 files changed, 270 insertions(+), 900 deletions(-)

More information about tensorflow at CRAN
Permanent link

Package mosaic updated to version 1.1.0 with previous version 1.0.0 dated 2017-07-26

Title: Project MOSAIC Statistics and Mathematics Teaching Utilities
Description: Data sets and utilities from Project MOSAIC (<http://mosaic-web.org>) used to teach mathematics, statistics, computation and modeling. Funded by the NSF, Project MOSAIC is a community of educators working to tie together aspects of quantitative work that students in science, technology, engineering and mathematics will need in their professional lives, but which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel T. Kaplan <kaplan@macalester.edu>, Nicholas J. Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>

Diff between mosaic versions 1.0.0 dated 2017-07-26 and 1.1.0 dated 2017-08-26

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 mosaic-1.1.0/mosaic/NEWS.md                                   |    5 
 mosaic-1.1.0/mosaic/R/CIsim.R                                 |   18 
 mosaic-1.1.0/mosaic/R/Clustering.R                            |    6 
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Package ggformula updated to version 0.6 with previous version 0.5 dated 2017-07-24

Title: Formula Interface to the Grammar of Graphics
Description: Provides a formula interface to 'ggplot2' graphics.
Author: Daniel Kaplan [aut], Randall Pruim [aut, cre]
Maintainer: Randall Pruim <rpruim@calvin.edu>

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Package multipanelfigure updated to version 0.10.3 with previous version 0.9.0 dated 2017-04-19

Title: Infrastructure to Assemble Multi-Panel Figures (from Grobs)
Description: Tools to create a layout for figures made of multiple panels, and to fill the panels with base, 'lattice', 'ggplot2' and 'ComplexHeatmap' plots, grobs, and PNG, JPEG, SVG and TIFF images.
Author: Johannes Graumann [cre, aut], Richard Cotton [ctb]
Maintainer: Johannes Graumann <jog2030@qatar-med.cornell.edu>

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Package cchs updated to version 0.4.0 with previous version 0.3.0 dated 2016-07-15

Title: Cox Model for Case-Cohort Data with Stratified Subcohort-Selection
Description: Contains a function, also called 'cchs', that calculates Estimator III of Borgan et al (2000), <DOI:10.1023/A:1009661900674>. This estimator is for fitting a Cox proportional hazards model to data from a case-cohort study where the subcohort was selected by stratified simple random sampling.
Author: E. Jones
Maintainer: E. Jones <r-cchs@outlook.com>

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Package RGraphM updated to version 0.1.10 with previous version 0.1.9 dated 2017-08-21

Title: Graph Matching Library for R
Description: This is a wrapper package for the graph matching library 'graphm'. The original 'graphm' C/C++ library can be found in <http://cbio.mines-paristech.fr/graphm/> . Latest version ( 0.52 ) of this library is slightly modified to fit 'Rcpp' usage and included in the source package. The development version of the package is also available at <https://github.com/adalisan/RGraphM> .
Author: Mikhail Zaslavskiy, Sancar Adali
Maintainer: Sancar Adali <sancar.adali@gmail.com>

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Package phyclust updated to version 0.1-20 with previous version 0.1-19 dated 2017-04-29

Title: Phylogenetic Clustering (Phyloclustering)
Description: Phylogenetic clustering (phyloclustering) is an evolutionary Continuous Time Markov Chain model-based approach to identify population structure from molecular data without assuming linkage equilibrium. The package phyclust (Chen 2011) provides a convenient implementation of phyloclustering for DNA and SNP data, capable of clustering individuals into subpopulations and identifying molecular sequences representative of those subpopulations. It is designed in C for performance, interfaced with R for visualization, and incorporates other popular open source programs including ms (Hudson 2002) <doi:10.1093/bioinformatics/18.2.337>, seq-gen (Rambaut and Grassly 1997) <doi:10.1093/bioinformatics/13.3.235>, Hap-Clustering (Tzeng 2005) <doi:10.1002/gepi.20063> and PAML baseml (Yang 1997, 2007) <doi:10.1093/bioinformatics/13.5.555>, <doi:10.1093/molbev/msm088>, for simulating data, additional analyses, and searching the best tree. See the phyclust website for more information, documentations and examples.
Author: Wei-Chen Chen [aut, cre], Karin Dorman [aut]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

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Package fastDummies updated to version 0.1.2 with previous version 0.1.1 dated 2017-05-08

Title: Fast Creation of Dummy (Binary) Columns from Categorical Variables
Description: Creates dummy columns from columns that have categorical variables (character or factor types). You can also specify which columns to make dummies out of, or which columns to ignore. This package provides a significant speed increase from creating dummy variables through model.matrix().
Author: Jacob Kaplan [aut, cre], Benjamin Schlegel [ctb]
Maintainer: Jacob Kaplan <jacobkap@sas.upenn.edu>

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Package meltt updated to version 0.3.2 with previous version 0.3.1 dated 2017-07-19

Title: Matching Event Data by Location, Time and Type
Description: Framework for merging and disambiguating event data based on spatiotemporal co-occurrence and secondary event characteristics. It can account for intrinsic "fuzziness" in the coding of events, varying event taxonomies and different geo-precision codes.
Author: Karsten Donnay and Eric Dunford
Maintainer: Karsten Donnay <kdonnay@gmx.net>

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Package rscala updated to version 2.3.2 with previous version 2.3.1 dated 2017-08-22

Title: Bi-Directional Interface Between R and Scala with Callbacks
Description: The Scala <http://www.scala-lang.org/> interpreter is embedded in R and callbacks to R from the embedded interpreter are supported. Conversely, the R interpreter is embedded in Scala. Scala versions in the 2.10.x, 2.11.x, and 2.12.x series are supported.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>

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Package rredlist updated to version 0.4.0 with previous version 0.3.0 dated 2017-01-11

Title: 'IUCN' Red List Client
Description: 'IUCN' Red List (<http://apiv3.iucnredlist.org/api/v3/docs>) client. The 'IUCN' Red List is a global list of threatened and endangered species. Functions cover all of the Red List 'API' routes. An 'API' key is required.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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Package reticulate updated to version 1.1 with previous version 1.0 dated 2017-07-25

Title: R Interface to Python
Description: R interface to Python modules, classes, and functions. When calling into Python R data types are automatically converted to their equivalent Python types. When values are returned from Python to R they are converted back to R types. Compatible with all versions of Python >= 2.7.
Author: JJ Allaire [aut, cre], Kevin Ushey [ctb], RStudio [cph, fnd], Yuan Tang [aut, cph], Dirk Eddelbuettel [ctb, cph], Bryan Lewis [ctb, cph], Marcus Geelnard [aut, cph] (TinyThread library, http://tinythreadpp.bitsnbites.eu/)
Maintainer: JJ Allaire <jj@rstudio.com>

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Package pixiedust updated to version 0.8.0 with previous version 0.7.5 dated 2017-05-07

Title: Tables so Beautifully Fine-Tuned You Will Believe It's Magic
Description: The introduction of the 'broom' package has made converting model objects into data frames as simple as a single function. While the 'broom' package focuses on providing tidy data frames that can be used in advanced analysis, it deliberately stops short of providing functionality for reporting models in publication-ready tables. 'pixiedust' provides this functionality with a programming interface intended to be similar to 'ggplot2's system of layers with fine tuned control over each cell of the table. Options for output include printing to the console and to the common markdown formats (markdown, HTML, and LaTeX). With a little 'pixiedust' (and happy thoughts) tables can really fly.
Author: Benjamin Nutter [aut, cre]
Maintainer: Benjamin Nutter <nutter@battelle.org>

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Package mosaicCore updated to version 0.4.0 with previous version 0.2.0 dated 2017-07-24

Title: Common Utilities for Other MOSAIC-Family Packages
Description: Common utilities used in other MOSAIC-family packages are collected here.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel T. Kaplan <kaplan@macalester.edu>, Nicholas J. Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>

Diff between mosaicCore versions 0.2.0 dated 2017-07-24 and 0.4.0 dated 2017-08-26

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More information about mosaicCore at CRAN
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Package ECOSolveR updated to version 0.3-1 with previous version 0.3 dated 2017-05-16

Title: Embedded Conic Solver in R
Description: R interface to the Embedded COnic Solver (ECOS), an efficient and robust C library for convex problems. Conic and equality constraints can be specified in addition to integer and boolean variable constraints for mixed-integer problems. This R interface is inspired by the python interface and has similar calling conventions.
Author: Anqi Fu [aut], Balasubramanian Narasimhan [aut, cre]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>

Diff between ECOSolveR versions 0.3 dated 2017-05-16 and 0.3-1 dated 2017-08-26

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Package Bios2cor (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-08-24 1.1

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