Title: Respondent-Driven Sampling
Description: Provides functionality for carrying out estimation
with data collected using Respondent-Driven Sampling. This includes
Heckathorn's RDS-I and RDS-II estimators as well as Gile's Sequential
Sampling estimator. The package is part of the "RDS Analyst" suite of
packages for the analysis of respondent-driven sampling data.
Author: Mark S. Handcock [aut, cre],
Krista J. Gile [aut],
Ian E. Fellows [aut],
W. Whipple Neely [aut]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between RDS versions 0.7-8 dated 2016-12-27 and 0.8-0 dated 2017-09-15
RDS-0.7-8/RDS/inst/tests |only RDS-0.8-0/RDS/DESCRIPTION | 13 RDS-0.8-0/RDS/MD5 | 154 +-- RDS-0.8-0/RDS/NAMESPACE | 20 RDS-0.8-0/RDS/R/LRT.trend.R | 308 +++--- RDS-0.8-0/RDS/R/MA.estimates.R |only RDS-0.8-0/RDS/R/MA.parallel.R |only RDS-0.8-0/RDS/R/MA.sampling-c.R |only RDS-0.8-0/RDS/R/MA.util.R |only RDS-0.8-0/RDS/R/RDS.compare.proportions.R | 186 +-- RDS-0.8-0/RDS/R/bgk_kde.R | 273 +++-- RDS-0.8-0/RDS/R/bootstrap-intervals.R | 1113 ++++++++++++++-------- RDS-0.8-0/RDS/R/bootstrap.contingency.test.R |only RDS-0.8-0/RDS/R/control.rds.estimates.R | 90 + RDS-0.8-0/RDS/R/control.utilities.R | 20 RDS-0.8-0/RDS/R/data-export.R | 445 +++++--- RDS-0.8-0/RDS/R/data-import.R | 191 ++- RDS-0.8-0/RDS/R/differential-activity.R | 301 +++--- RDS-0.8-0/RDS/R/errorbar.R | 124 +- RDS-0.8-0/RDS/R/estimate-plots.R | 370 +++---- RDS-0.8-0/RDS/R/estimate-utils.R | 332 +++--- RDS-0.8-0/RDS/R/gile-bootstrap.R | 1198 ++++++++++++------------ RDS-0.8-0/RDS/R/gile-ss-util.R | 214 ++-- RDS-0.8-0/RDS/R/hcg-bootstrap.R |only RDS-0.8-0/RDS/R/hcg-util.R |only RDS-0.8-0/RDS/R/homophily.R | 719 +++++++------- RDS-0.8-0/RDS/R/impute-degree.R |only RDS-0.8-0/RDS/R/incidence.R |only RDS-0.8-0/RDS/R/llmeC.R | 517 +++++----- RDS-0.8-0/RDS/R/me.impute.R | 404 ++++---- RDS-0.8-0/RDS/R/rds-HCG.R |only RDS-0.8-0/RDS/R/rds-I.R | 38 RDS-0.8-0/RDS/R/rds-II.R | 31 RDS-0.8-0/RDS/R/rds-doc.R | 16 RDS-0.8-0/RDS/R/rds-ss.R | 78 - RDS-0.8-0/RDS/R/rds.data.frame-plots.R | 584 +++++------ RDS-0.8-0/RDS/R/rds.data.frame-utils.R | 168 +-- RDS-0.8-0/RDS/R/rds.data.frame.R | 435 +++++--- RDS-0.8-0/RDS/R/rds.estimates.local.R | 433 +++++--- RDS-0.8-0/RDS/R/rds.interval.estimate.R | 130 +- RDS-0.8-0/RDS/R/rds.weighted.estimate-class.R | 124 +- RDS-0.8-0/RDS/R/robust.inverse.R | 46 RDS-0.8-0/RDS/R/salganik-bootstrap.R | 338 +++--- RDS-0.8-0/RDS/R/summary.odds.R | 264 ++--- RDS-0.8-0/RDS/R/treeboot.R |only RDS-0.8-0/RDS/R/utils.R | 32 RDS-0.8-0/RDS/R/weights.R | 345 ++++-- RDS-0.8-0/RDS/R/wtd.stats.R | 80 - RDS-0.8-0/RDS/data/fauxtime.RData |only RDS-0.8-0/RDS/man/MA.estimates.Rd |only RDS-0.8-0/RDS/man/RDS.HCG.estimates.Rd |only RDS-0.8-0/RDS/man/RDS.I.estimates.Rd | 7 RDS-0.8-0/RDS/man/RDS.II.estimates.Rd | 4 RDS-0.8-0/RDS/man/RDS.SS.estimates.Rd | 5 RDS-0.8-0/RDS/man/RDS.bootstrap.intervals.Rd | 36 RDS-0.8-0/RDS/man/as.rds.data.frame.Rd | 5 RDS-0.8-0/RDS/man/bootstrap.contingency.test.Rd |only RDS-0.8-0/RDS/man/bootstrap.incidence.Rd |only RDS-0.8-0/RDS/man/bottleneck.plot.Rd | 4 RDS-0.8-0/RDS/man/compute.weights.Rd | 2 RDS-0.8-0/RDS/man/control.rds.estimates.Rd | 20 RDS-0.8-0/RDS/man/convergence.plot.Rd | 4 RDS-0.8-0/RDS/man/cumulative.estimate.Rd | 4 RDS-0.8-0/RDS/man/fauxtime.Rd |only RDS-0.8-0/RDS/man/get.population.size.Rd | 4 RDS-0.8-0/RDS/man/get.recruitment.time.Rd |only RDS-0.8-0/RDS/man/has.recruitment.time.Rd |only RDS-0.8-0/RDS/man/hcg.weights.Rd |only RDS-0.8-0/RDS/man/impute.degree.Rd |only RDS-0.8-0/RDS/man/impute.visibility.Rd | 5 RDS-0.8-0/RDS/man/print.rds.contin.bootstrap.Rd |only RDS-0.8-0/RDS/src/RDSSample.c |only RDS-0.8-0/RDS/src/RDSSample.h |only RDS-0.8-0/RDS/src/R_init.c |only RDS-0.8-0/RDS/src/bsC.c | 2 RDS-0.8-0/RDS/src/changestat.c |only RDS-0.8-0/RDS/src/changestat.h |only RDS-0.8-0/RDS/src/dpoilog.c | 258 ++--- RDS-0.8-0/RDS/src/edgelist.c |only RDS-0.8-0/RDS/src/edgelist.h |only RDS-0.8-0/RDS/src/edgetree.c |only RDS-0.8-0/RDS/src/edgetree.h |only RDS-0.8-0/RDS/src/getinclCstacked.c | 344 +++--- RDS-0.8-0/RDS/src/getinclCstacked.h | 32 RDS-0.8-0/RDS/src/llmeC.c | 325 +++--- RDS-0.8-0/RDS/src/llmeC.h | 80 - RDS-0.8-0/RDS/tests/tests.R | 2 RDS-0.8-0/RDS/tests/testthat |only 88 files changed, 6164 insertions(+), 5113 deletions(-)
Title: Differential RNA Methylation Analysis for Count-Based
Small-Sample Sequencing Data with a Quad-Negative Binomial
Model
Description: As a newly emerged research area, RNA epigenetics has drawn increasing
attention recently for the participation of RNA methylation and other
modifications in a number of crucial biological processes. Thanks to high
throughput sequencing techniques, such as m6A-Seq, transcriptome-wide RNA
methylation profile is now available in the form of count-based data, with
which it is often of interests to study the dynamics in epitranscriptomic
layer. However, the sample size of RNA methylation experiment is usually
very small due to its costs; and additionally, there usually exist a large
number of genes whose methylation level cannot be accurately estimated due
to their low expression level, making differential RNA methylation analysis
a difficult task.
We present QNB, a statistical approach for differential RNA methylation
analysis with count-based small-sample sequencing data. The method is based
on 4 independent negative binomial distributions with their variances and
means linked by local regressions. QNB showed improved performance on
simulated and real m6A-Seq datasets when compared with competing algorithms.
And the QNB model is also applicable to other datasets related RNA
modifications, including but not limited to RNA bisulfite sequencing,
m1A-Seq, Par-CLIP, RIP-Seq, etc.Please don't hesitate to contact
<liulian19860905@163.com> if you have any questions.
Author: Lian Liu <liulian19860905@163.com>
Maintainer: Lian Liu <liulian19860905@163.com>
Diff between QNB versions 1.1.9 dated 2017-07-19 and 1.1.10 dated 2017-09-15
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/qnbtest.R | 16 ++++++++-------- man/QNB-package.Rd | 4 ++-- 4 files changed, 17 insertions(+), 17 deletions(-)
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include Sql Server, Oracle,
PostgreSql, Amazon RedShift, Impala, IBM Netezza, Google BigQuery, and Microsoft PDW.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.3.7 dated 2017-05-03 and 1.4.3 dated 2017-09-15
DESCRIPTION | 20 MD5 | 47 - NAMESPACE | 3 NEWS | 15 R/RenderSql.R | 9 R/ShinyApps.R |only README.md | 13 build/vignette.rds |binary inst/csv/replacementPatterns.csv | 239 ++++- inst/doc/UsingSqlRender.R | 5 inst/doc/UsingSqlRender.Rmd | 62 - inst/doc/UsingSqlRender.pdf |binary inst/java/SqlRender.jar |binary inst/shinyApps |only java/org/ohdsi/sql/BigQueryTranslate.java |only java/org/ohdsi/sql/SqlRender.java | 2 java/org/ohdsi/sql/SqlTranslate.java | 21 java/org/ohdsi/sql/StringUtils.java | 17 java/org/ohdsi/sql/TestSqlRender.java | 15 man/SqlRender.Rd |only man/launchSqlRenderDeveloper.Rd |only man/translateSql.Rd | 2 tests/testthat/test-renderSql.R | 10 tests/testthat/test-splitSql.R | 15 tests/testthat/test-translateSql.R | 1213 +++++++++++++++++++++++++++++- vignettes/UsingSqlRender.Rmd | 62 - 26 files changed, 1584 insertions(+), 186 deletions(-)
Title: Super Imposition by Translation and Rotation Growth Curve
Analysis
Description: Functions for fitting and plotting SITAR (Super Imposition by
Translation And Rotation) growth curve models. SITAR is a shape-invariant model
with a regression B-spline mean curve and subject-specific random effects on
both the measurement and age scales.
Author: Tim Cole
Maintainer: Tim Cole <tim.cole@ucl.ac.uk>
Diff between sitar versions 1.0.9 dated 2017-01-09 and 1.0.10 dated 2017-09-15
sitar-1.0.10/sitar/DESCRIPTION | 10 - sitar-1.0.10/sitar/MD5 | 93 ++++++------ sitar-1.0.10/sitar/NAMESPACE | 8 - sitar-1.0.10/sitar/NEWS | 27 +++ sitar-1.0.10/sitar/R/BICadj.R | 193 ++++++++++++++------------ sitar-1.0.10/sitar/R/LMS2z.R | 95 +++++------- sitar-1.0.10/sitar/R/LMSfit.R | 67 ++++----- sitar-1.0.10/sitar/R/dfpower.R |only sitar-1.0.10/sitar/R/dfset.R |only sitar-1.0.10/sitar/R/getPeakTrough.R |only sitar-1.0.10/sitar/R/plot.sitar.R | 86 +++++------ sitar-1.0.10/sitar/R/predict.sitar.R | 35 +++- sitar-1.0.10/sitar/R/sitar.R | 33 ++-- sitar-1.0.10/sitar/R/sitarlib.R | 86 ----------- sitar-1.0.10/sitar/R/timegap.R | 7 sitar-1.0.10/sitar/R/xyadj.R | 2 sitar-1.0.10/sitar/man/BICadj.Rd | 33 +++- sitar-1.0.10/sitar/man/LMS2z.Rd | 33 ++-- sitar-1.0.10/sitar/man/LMSfit.Rd | 24 +-- sitar-1.0.10/sitar/man/anova.sitar.Rd | 5 sitar-1.0.10/sitar/man/bupdate.Rd | 1 sitar-1.0.10/sitar/man/cLMS.Rd | 8 - sitar-1.0.10/sitar/man/codeplot.Rd | 12 - sitar-1.0.10/sitar/man/dfpower.Rd |only sitar-1.0.10/sitar/man/dfset.Rd |only sitar-1.0.10/sitar/man/funcall.Rd | 1 sitar-1.0.10/sitar/man/getData.sitar.Rd | 3 sitar-1.0.10/sitar/man/getPeakTrough.Rd |only sitar-1.0.10/sitar/man/heights.Rd | 1 sitar-1.0.10/sitar/man/ifun.Rd | 7 sitar-1.0.10/sitar/man/mplot.Rd | 7 sitar-1.0.10/sitar/man/plot.sitar.Rd | 12 - sitar-1.0.10/sitar/man/plotclean.Rd | 1 sitar-1.0.10/sitar/man/predict.sitar.Rd | 16 -- sitar-1.0.10/sitar/man/print.sitar.Rd | 1 sitar-1.0.10/sitar/man/print.summary.sitar.Rd | 1 sitar-1.0.10/sitar/man/recalib.Rd | 1 sitar-1.0.10/sitar/man/sitar-package.Rd | 7 sitar-1.0.10/sitar/man/sitar.Rd | 10 - sitar-1.0.10/sitar/man/subsample.Rd | 7 sitar-1.0.10/sitar/man/summary.sitar.Rd | 1 sitar-1.0.10/sitar/man/timegap.Rd | 5 sitar-1.0.10/sitar/man/uk90.Rd | 1 sitar-1.0.10/sitar/man/ukwhopt.Rd | 1 sitar-1.0.10/sitar/man/velout.Rd | 7 sitar-1.0.10/sitar/man/who06.Rd | 1 sitar-1.0.10/sitar/man/xaxsd.Rd | 2 sitar-1.0.10/sitar/man/xyadj.Rd | 4 sitar-1.0.10/sitar/man/y2plot.Rd | 7 sitar-1.0.10/sitar/man/z2cent.Rd | 7 sitar-1.0.9/sitar/man/makess.Rd |only 51 files changed, 489 insertions(+), 480 deletions(-)
Title: Construct Complex Table with 'kable' and Pipe Syntax
Description: A collection of functions to help build complex HTML or 'LaTeX'
tables using 'kable()' from 'knitr' and the piping syntax from 'magrittr'.
Function 'kable()' is a light weight table generator coming from 'knitr'.
This package simplifies the way to manipulate the HTML or 'LaTeX' codes
generated by 'kable()' and allows users to construct complex tables
and customize styles using a readable syntax.
Author: Hao Zhu [aut, cre],
Timothy Tsai [ctb],
Thomas Travison [ctb],
Will Beasley [ctb],
Yihui Xie [ctb],
GuangChuang Yu [ctb],
Stéphane Laurent [ctb],
Rob Shepherd [ctb],
Yoni Sidi [ctb]
Maintainer: Hao Zhu <haozhu233@gmail.com>
Diff between kableExtra versions 0.5.1 dated 2017-09-08 and 0.5.2 dated 2017-09-15
DESCRIPTION | 10 +-- MD5 | 42 ++++++------- NAMESPACE | 1 R/column_spec.R | 103 ++++++++++++++++----------------- R/group_rows.R | 60 ++++++++++++++----- R/kableExtra-package.R | 1 R/kable_as_image.R | 101 ++++++++++++++++++--------------- R/row_spec.R | 83 +++++++++++++++------------ R/util.R | 30 +++++---- inst/NEWS.md | 14 ++++ inst/doc/awesome_table_in_html.R | 53 +++++++++-------- inst/doc/awesome_table_in_html.Rmd | 60 +++++++++++-------- inst/doc/awesome_table_in_html.html | 110 ++++++++++++++++++------------------ inst/doc/awesome_table_in_pdf.R | 24 +++++++ inst/doc/awesome_table_in_pdf.Rmd | 40 +++++++++++-- inst/doc/awesome_table_in_pdf.pdf |binary man/column_spec.Rd | 6 - man/group_rows.Rd | 8 +- man/kable_as_image.Rd | 9 ++ man/row_spec.Rd | 4 - vignettes/awesome_table_in_html.Rmd | 60 +++++++++++-------- vignettes/awesome_table_in_pdf.Rmd | 40 +++++++++++-- 22 files changed, 523 insertions(+), 336 deletions(-)
Title: Effect Displays for Linear, Generalized Linear, and Other Models
Description: Graphical and tabular effect displays, e.g., of interactions, for
various statistical models with linear predictors.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Michael Friendly [aut],
Jangman Hong [aut],
Robert Andersen [ctb],
David Firth [ctb],
Steve Taylor [ctb],
R Core Team [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between effects versions 3.1-2 dated 2016-10-05 and 4.0-0 dated 2017-09-15
effects-3.1-2/effects/data |only effects-3.1-2/effects/man/Arrests.Rd |only effects-3.1-2/effects/man/BEPS.Rd |only effects-3.1-2/effects/man/Cowles.Rd |only effects-3.1-2/effects/man/Hartnagel.Rd |only effects-3.1-2/effects/man/Prestige.Rd |only effects-3.1-2/effects/man/Titanic.Rd |only effects-3.1-2/effects/man/WVS.Rd |only effects-3.1-2/effects/man/Wells.Rd |only effects-3.1-2/effects/man/effects-deprecated.Rd |only effects-4.0-0/effects/DESCRIPTION | 28 effects-4.0-0/effects/MD5 | 64 - effects-4.0-0/effects/NAMESPACE | 30 effects-4.0-0/effects/NEWS | 88 + effects-4.0-0/effects/R/Effect.R | 198 ++- effects-4.0-0/effects/R/Effect.mlm.R | 76 - effects-4.0-0/effects/R/effects.R | 89 - effects-4.0-0/effects/R/effectsclmm.R | 57 - effects-4.0-0/effects/R/effectsmer.R | 213 +-- effects-4.0-0/effects/R/effectspoLCA.R | 79 - effects-4.0-0/effects/R/plot-methods.R | 542 ++++++--- effects-4.0-0/effects/R/plot.effpoly.R | 1350 +++++++++++++++--------- effects-4.0-0/effects/R/predictorEffects.R |only effects-4.0-0/effects/R/summary-print-methods.R | 362 +++--- effects-4.0-0/effects/R/utilities.R | 125 +- effects-4.0-0/effects/build |only effects-4.0-0/effects/inst/doc |only effects-4.0-0/effects/man/LegacyArguments.Rd |only effects-4.0-0/effects/man/effect.Rd | 580 +++++----- effects-4.0-0/effects/man/effects-package.Rd | 37 effects-4.0-0/effects/man/effectsTheme.Rd |only effects-4.0-0/effects/man/plot.predictoreff.Rd |only effects-4.0-0/effects/man/predictorEffects.Rd |only effects-4.0-0/effects/man/summary.effect.Rd | 562 +++++---- effects-4.0-0/effects/tests/effect-tests-1.R | 255 ++-- effects-4.0-0/effects/tests/effect-tests-2.R | 33 effects-4.0-0/effects/vignettes |only 37 files changed, 2838 insertions(+), 1930 deletions(-)
Title: Create Interactive Carousels with the JavaScript 'Slick' Library
Description: Create and customize interactive carousels using the 'Slick'
JavaScript library and the 'htmlwidgets' package. The carousels can contain plots
produced in R, images, 'iframes', videos and other 'htmlwidgets'.
These carousels can be used directly from the R console, from 'RStudio',
in Shiny apps and R Markdown documents.
Author: Jonathan Sidi [aut, cre]
Maintainer: Jonathan Sidi <yonis@metrumrg.com>
Diff between slickR versions 0.1.0 dated 2017-04-01 and 0.2.0 dated 2017-09-15
DESCRIPTION | 8 MD5 | 14 - R/slickR.R | 39 +-- README.md | 200 +---------------- inst/htmlwidgets/lib/slick-1.6.0/slick/slick-theme.css | 2 inst/htmlwidgets/lib/slickR/slickR.css | 5 inst/htmlwidgets/slickR.js | 8 man/slickR.Rd | 20 + 8 files changed, 73 insertions(+), 223 deletions(-)
Title: Visualizing Hypothesis Tests in Multivariate Linear Models
Description: Provides HE plot and other functions for visualizing hypothesis
tests in multivariate linear models. HE plots represent sums-of-squares-and-
products matrices for linear hypotheses and for error using ellipses (in two
dimensions) and ellipsoids (in three dimensions). The related 'candisc' package
provides visualizations in a reduced-rank canonical discriminant space when
there are more than a few response variables.
Author: John Fox [aut], Michael Friendly [aut, cre], Georges Monette [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between heplots versions 1.3-3 dated 2016-10-21 and 1.3-4 dated 2017-09-15
DESCRIPTION | 9 MD5 | 110 ++++---- NEWS | 4 R/logdetCI.R | 19 - build/vignette.rds |binary data/Diabetes.RData |only inst/doc/HE-examples.pdf |binary inst/doc/repeated.pdf |binary man/Diabetes.Rd |only man/RatWeight.Rd | 2 man/heplot-package.Rd | 2 man/heplot.Rd | 2 man/logdetCI.Rd | 9 vignettes/HE-examples.bib | 108 ++++---- vignettes/fig/plot-Ortho-fm1.pdf |binary vignettes/fig/plot-Ortho-fm3.pdf |binary vignettes/fig/plot-grades-can-class.pdf |binary vignettes/fig/plot-grades-can-gpa.pdf |binary vignettes/fig/plot-grades-can-sex.pdf |binary vignettes/fig/plot-grades-pairs.pdf |binary vignettes/fig/plot-hern-can-age.pdf |binary vignettes/fig/plot-hern-can-build.pdf |binary vignettes/fig/plot-hern-can-cardiac.pdf |binary vignettes/fig/plot-hern-can-pstat.pdf |binary vignettes/fig/plot-hern-pairs.pdf |binary vignettes/fig/plot-jury-can1.pdf |binary vignettes/fig/plot-jury-can1a.pdf | 128 +++++----- vignettes/fig/plot-jury-mod1-HE.pdf |binary vignettes/fig/plot-jury-mod1-pairs.pdf |binary vignettes/fig/plot-jury-mod2-HE.pdf |binary vignettes/fig/plot-jury-mod3-eff.pdf |binary vignettes/fig/plot-obk-HE1.pdf |binary vignettes/fig/plot-obk-HE2.pdf |binary vignettes/fig/plot-obk-HE3.pdf |binary vignettes/fig/plot-obk2-HE1.pdf |binary vignettes/fig/plot-obk2-HE2.pdf |binary vignettes/fig/plot-ortho-HE.pdf |binary vignettes/fig/plot-ortho-nonlin-HE.pdf |binary vignettes/fig/plot-ortho-xyplot1.pdf |binary vignettes/fig/plot-ortho-xyplot2.pdf |binary vignettes/fig/plot-plastic2.pdf |binary vignettes/fig/plot-rohwer-HE1.pdf |binary vignettes/fig/plot-rohwer-HE2.pdf |binary vignettes/fig/plot-rohwer-HE3.pdf |binary vignettes/fig/plot-rohwer-HE4.pdf |binary vignettes/fig/plot-skulls-HE-pairs.pdf |binary vignettes/fig/plot-skulls-bwplot.pdf |binary vignettes/fig/plot-skulls-can2.pdf |binary vignettes/fig/plot-skulls4.pdf |binary vignettes/fig/plot-voc1.pdf |binary vignettes/fig/plot-voc4.pdf |binary vignettes/fig/plot-voc8.pdf |binary vignettes/fig/plot-wl-HE1.pdf |binary vignettes/fig/plot-wl-HE2.pdf |binary vignettes/fig/plot-wl-HE3.pdf |binary vignettes/fig/plot-wl-means.pdf |binary vignettes/repeated.bib | 400 ++++++++++++++++---------------- 57 files changed, 399 insertions(+), 394 deletions(-)
Title: Geometric Median, k-Median Clustering and Robust Median PCA
Description: Fast algorithms for robust estimation with large samples of multivariate observations. Estimation of the geometric median, robust k-Gmedian clustering, and robust PCA based on the Gmedian covariation matrix.
Author: Herve Cardot
Maintainer: Herve Cardot <herve.cardot@u-bourgogne.fr>
Diff between Gmedian versions 1.2.3 dated 2016-09-05 and 1.2.4 dated 2017-09-15
DESCRIPTION | 8 ++--- MD5 | 18 +++++------ NEWS | 4 ++ R/GmedianCov.R | 4 +- R/RcppExports.R | 14 ++++---- build/partial.rdb |binary man/Gmedian-package.Rd | 2 - man/GmedianCov.Rd | 6 +-- man/WeiszfeldCov.Rd | 4 +- src/RcppExports.cpp | 77 +++++++++++++++++++++++++++++-------------------- 10 files changed, 78 insertions(+), 59 deletions(-)
Title: Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, and summarize Generalized Dissimilarity Models (Ferrier et al. 2007, <doi:10.1111/j.1472-4642.2007.00341.x>).
Author: Glenn Manion, Matthew Lisk, Simon Ferrier, Diego Nieto-Lugilde, Karel Mokany, Matthew C. Fitzpatrick
Maintainer: Matthew C. Fitzpatrick <mfitzpatrick@umces.edu>
Diff between gdm versions 1.3.3 dated 2017-08-15 and 1.3.4 dated 2017-09-15
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/GDM_Table_Funcs.R | 18 ++++++++++++------ man/formatsitepair.Rd | 2 +- 4 files changed, 20 insertions(+), 14 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <http://canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut, cre],
Connie Brett [ctb]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 0.16.7 dated 2017-08-13 and 0.17.2 dated 2017-09-15
DESCRIPTION | 11 +++++++---- MD5 | 14 +++++++------- NEWS.md | 3 +++ inst/doc/additional_examples.html | 4 ++-- inst/doc/getting_started.html | 4 ++-- inst/htmlwidgets/canvasXpress.yaml | 2 +- inst/htmlwidgets/lib/canvasXpress/canvasXpress.min.js | 4 ++-- man/canvasXpress-package.Rd | 8 ++++++++ 8 files changed, 32 insertions(+), 18 deletions(-)
Title: Bayesian Multilevel Mediation
Description: Easy estimation of Bayesian multilevel mediation models with Stan.
Author: Matti Vuorre [aut, cre]
Maintainer: Matti Vuorre <mv2521@columbia.edu>
Diff between bmlm versions 1.3.0 dated 2017-06-23 and 1.3.3 dated 2017-09-15
DESCRIPTION | 8 ++--- MD5 | 13 ++++---- NEWS.md | 12 +++++++ R/mlm_plot.R | 68 +++++++++++++++++++++++++++++++++----------- README.md | 2 - man/mlm_spaghetti_plot.Rd | 16 +++++++++- src/RcppExports.cpp |only src/include/models.hpp | 70 +++++++++++++++++++++++++++------------------- 8 files changed, 131 insertions(+), 58 deletions(-)
Title: Liu Regression with Liu Biasing Parameters and Statistics
Description: Linear Liu regression coefficient's estimation and testing with different Liu related measures such as MSE, R-squared etc.
Author: Muhammad Imdadullah, Dr. Muhammad Aslam
Maintainer: Muhammad Imdadullah <mimdadasad@gmail.com>
Diff between liureg versions 1.01 dated 2017-06-23 and 1.1.1 dated 2017-09-15
DESCRIPTION | 11 +++++------ MD5 | 28 ++++++++++++++-------------- R/lstats.R | 2 +- R/plot.R | 4 ++-- R/summary.R | 25 ++++++++++++------------- inst/NEWS.Rd | 3 ++- man/dest.Rd | 6 +++++- man/hatl.Rd | 2 +- man/liu.Rd | 6 +++--- man/liureg-package.Rd | 2 +- man/lstats.liu.Rd | 10 +++++++--- man/plot.liu.Rd | 2 +- man/press.liu.Rd | 4 +++- man/summary.liu.Rd | 4 ++-- man/vcov.liu.Rd | 2 +- 15 files changed, 60 insertions(+), 51 deletions(-)
Title: Headers for the 'xtensor' Library
Description: The 'xtensor' C++ library for numerical analysis with
multi-dimensional array expressions is provided as a header-only
C++14 library. It offers an extensible expression system enabling
lazy broadcasting; an API following the idioms of the C++ standard
library; and tools to manipulate array expressions and build upon 'xtensor'.
Author: Johan Mabille, Sylvain Corlay and Wolf Vollprecht
Maintainer: Sylvain Corlay <sylvain.corlay@gmail.com>
Diff between xtensor versions 0.1.0-0 dated 2017-09-11 and 0.1.1-0 dated 2017-09-15
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- inst/include/xtensor-r/xtensor_r_config.hpp | 2 +- inst/include/xtensor/xbuilder.hpp | 2 +- inst/include/xtensor/xinfo.hpp | 2 +- inst/include/xtensor/xtensor_config.hpp | 2 +- inst/lib/cmake/xtensor-r/xtensor-rConfigVersion.cmake | 2 +- inst/lib/cmake/xtensor/xtensorConfigVersion.cmake | 2 +- inst/lib/pkgconfig/xtensor.pc | 2 +- 9 files changed, 18 insertions(+), 18 deletions(-)
Title: Moran's Eigenvector-Based Spatial Regression Models
Description: Functions for estimating fixed and random effects
eigenvector spatial filtering models.
For details see Daisuke Murakami (2017) <arXiv:1703.04467v3>.
Author: Daisuke Murakami
Maintainer: Daisuke Murakami <dmuraka@ism.ac.jp>
Diff between spmoran versions 0.1.1 dated 2017-06-23 and 0.1.2 dated 2017-09-15
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- R/resf_vc.R | 1 + inst/doc/vignette.pdf |binary 4 files changed, 9 insertions(+), 7 deletions(-)
Title: Seasonal/Sequential (Instants/Durations, Even or not) Time
Series
Description: Objects to manipulate sequential and seasonal time series. Sequential time series based on time instants and time durations are handled. Both can be regularly or unevenly spaced (overlapping durations are allowed). Only POSIX* format are used for dates and times. The following classes are provided : 'POSIXcti', 'POSIXctp', 'TimeIntervalDataFrame', 'TimeInstantDataFrame', 'SubtimeDataFrame' ; methods to switch from a class to another and to modify the time support of series (hourly time series to daily time series for instance) are also defined. Tools provided can be used for instance to handle environmental monitoring data (not always produced on a regular time base).
Author: Vladislav Navel
Maintainer: Vladislav Navel <vnavel@yahoo.fr>
Diff between timetools versions 1.12.0 dated 2017-08-18 and 1.12.2 dated 2017-09-15
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/SubtimeDataFrame.R | 3 ++- R/TimeInstantDataFrame.R | 4 +++- R/TimeIntervalDataFrame.R | 6 +++++- README | 9 +++++++++ man/SubtimeDataFrame-class.Rd | 4 +++- man/TimeInstantDataFrame-class.Rd | 4 +++- man/TimeIntervalDataFrame-class.Rd | 4 +++- man/timetools-package.Rd | 4 ++-- 10 files changed, 43 insertions(+), 21 deletions(-)
Title: Client for 'Turfjs' for 'Geospatial' Analysis
Description: Client for 'Turfjs' (<http://turfjs.org>) for
'geospatial' analysis. The package revolves around using 'GeoJSON'
data. Functions are included for creating 'GeoJSON' data objects,
measuring aspects of 'GeoJSON', and combining, transforming,
and creating random 'GeoJSON' data objects.
Author: Scott Chamberlain [aut, cre],
Jeff Hollister [aut],
Morgan Herlocker [cph]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between lawn versions 0.3.0 dated 2016-10-25 and 0.4.0 dated 2017-09-15
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Title: Markov Models for Health Economic Evaluations
Description: An implementation of the modelling and
reporting features described in reference textbooks
and guidelines: deterministic and probabilistic
sensitivity analysis, heterogeneity analysis, time
dependency on state-time and model-time (semi-Markov
and non-homogeneous Markov models), etc.
Author: Antoine Filipovic-Pierucci [aut, cre],
Kevin Zarca [aut],
Matthew Wiener [ctb],
Zdenek Kabat [ctb],
Vojtech Filipec [ctb],
Jordan Amdahl [ctb],
Yonatan Carranza Alarcon [ctb],
Vince Daniels [ctb]
Maintainer: Antoine Filipovic-Pierucci <pierucci@gmail.com>
Diff between heemod versions 0.9.1 dated 2017-05-09 and 0.9.2 dated 2017-09-15
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Title: Analysis and Presentation of Social Scientific Data
Description: This is a collection of tools that the author (Jacob) has written
for the purpose of more efficiently understanding and sharing the results of
(primarily) regression analyses. There are a number of functions focused
specifically on the interpretation and presentation of interactions in linear
models. Just about everything supports models from the survey package.
Author: Jacob A. Long [aut, cre]
Maintainer: Jacob A. Long <long.1377@osu.edu>
Diff between jtools versions 0.5.0 dated 2017-08-08 and 0.7.1 dated 2017-09-15
DESCRIPTION | 10 MD5 | 82 +- NAMESPACE | 11 NEWS.md | 101 +++ R/center_lm.R | 127 +++ R/effect_plot.R |only R/gscale.R | 373 ++++++++--- R/interact_plot.R | 164 +++- R/internal.R | 96 ++ R/j_summary.R | 938 +++++++++++++++++++--------- R/johnson_neyman.R | 2 R/probe_interaction.R | 5 R/scale_lm.R | 142 +++- R/simple_slopes.R | 23 R/svycor.R | 10 R/svysd.R | 9 R/wgttest.R | 483 +++++++++++++- README.md | 415 +++++------- build/vignette.rds |binary inst/CITATION | 2 inst/doc/interactions.html | 40 - inst/doc/j_summ.R | 46 + inst/doc/j_summ.Rmd | 188 ++++- inst/doc/j_summ.html | 296 ++++++-- inst/doc/svycor.html | 38 - man/effect_plot.Rd |only man/interact_plot.Rd | 3 man/j_summ.Rd | 93 ++ man/pf_sv_test.Rd |only man/scale_lm.Rd | 2 man/sim_slopes.Rd | 10 man/svycor.Rd | 13 man/svysd.Rd | 12 man/weights_tests.Rd |only man/wgttest.Rd | 56 + tests/testthat/test-jsumm.R | 97 ++ tests/testthat/test-misc.R | 121 +++ tools/README-interact_plot_continuous-1.png |binary tools/README-interact_plot_factor-1.png |binary tools/README-j-n-plot-1.png |binary tools/README-probe_interaction_ex-1.png |binary tools/README-theme_apa_ex-1.png |binary tools/README-theme_apa_facet_ex-1.png |binary vignettes/j_summ.Rmd | 188 ++++- 44 files changed, 3119 insertions(+), 1077 deletions(-)
Title: The 'jamovi' Analyses
Description: A suite of common statistical methods such as descriptives,
t-tests, ANOVAs, correlation matrices, proportion tests, contingency tables,
and factor analysis. This package is also useable from the 'jamovi'
statistical spreadsheet (see <https://www.jamovi.org> for more information).
Author: Ravi Selker, Jonathon Love, Damian Dropmann
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmv versions 0.7.5.6 dated 2017-08-03 and 0.8 dated 2017-09-15
jmv-0.7.5.6/jmv/data/bugs.csv.gz |only jmv-0.8/jmv/DESCRIPTION | 14 ++-- jmv-0.8/jmv/MD5 | 25 ++++--- jmv-0.8/jmv/NAMESPACE | 1 jmv-0.8/jmv/R/ancova.b.R | 4 - jmv-0.8/jmv/R/ancova.h.R | 7 +- jmv-0.8/jmv/R/anova.h.R | 7 +- jmv-0.8/jmv/R/corrmatrix.b.R | 9 ++ jmv-0.8/jmv/R/descriptives.b.R | 122 ++++++++++++++++++++++++++++++++++----- jmv-0.8/jmv/R/descriptives.h.R | 7 +- jmv-0.8/jmv/R/loglinear.b.R |only jmv-0.8/jmv/R/loglinear.h.R |only jmv-0.8/jmv/data/bugs.csv |only jmv-0.8/jmv/man/ancova.Rd | 1 jmv-0.8/jmv/man/anova.Rd | 1 jmv-0.8/jmv/man/logLinear.Rd |only 16 files changed, 160 insertions(+), 38 deletions(-)
Title: Chart Generation for 'Microsoft Word' and 'Microsoft PowerPoint'
Documents
Description: Create native charts for 'Microsoft PowerPoint' and 'Microsoft Word' documents.
These can then be edited and annotated. Functions are provided to let users create charts, modify
and format their content. The chart's underlying data is automatically saved within the
'Word' document or 'PowerPoint' presentation. It extends package 'officer' that does
not contain any feature for 'Microsoft' native charts production.
Author: David Gohel [aut, cre],
YouGov [fnd]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between mschart versions 0.2.0 dated 2017-09-08 and 0.2.1 dated 2017-09-15
mschart-0.2.0/mschart/vignettes/assets |only mschart-0.2.1/mschart/DESCRIPTION | 6 +++--- mschart-0.2.1/mschart/MD5 | 24 +++++------------------- mschart-0.2.1/mschart/NAMESPACE | 1 + mschart-0.2.1/mschart/NEWS.md |only mschart-0.2.1/mschart/R/series.R | 3 ++- mschart-0.2.1/mschart/README.md | 6 ------ 7 files changed, 11 insertions(+), 29 deletions(-)
Title: Hierarchical Multiple Imputation
Description: Runs single level and multilevel imputation models. The user just has to pass the data to the main function and, optionally, his analysis model. Basically the package then translates this analysis model into commands to impute the data according to it with functions from 'mice', 'MCMCglmm' or routines build for this package.
Author: Matthias Speidel [aut, cre] (Institute for Employment Research,
Nuremberg, Germany),
Joerg Drechsler [aut] (Institute for Employment Research, Nuremberg,
Germany),
Shahab Jolani [aut] (Maastricht University, Maastricht, The
Netherlands)
Maintainer: Matthias Speidel <matthias.speidel@googlemail.com>
Diff between hmi versions 0.7.4 dated 2017-04-26 and 0.7.8 dated 2017-09-15
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insertions(+), 377 deletions(-)
More information about gradientPickerD3 at CRAN
Permanent link
Title: Goodness-of-Fit Tests for the Exponential and Two-Parameter
Weibull Distributions
Description: This package contains a large number of the goodness-of-fit tests for the Exponential and Weibull distributions classified into families: the tests based on the empirical distribution function, the tests based on the probability plot, the tests based on the normalized spacings, the tests based on the Laplace transform and the likelihood based tests.
Author: Meryam Krit
Maintainer: Meryam Krit <meryam.krit@gmail.com>
Diff between EWGoF versions 2.1 dated 2015-05-29 and 2.2 dated 2017-09-15
DESCRIPTION | 12 ++++++------ MD5 | 49 +++++++++++++++++++++++++------------------------ NAMESPACE | 3 ++- R/CF.test.R | 2 +- R/EDF_NS.test.R | 2 +- R/LK.test.R | 2 +- R/LRI.test.R | 2 +- R/MEst.R | 2 +- R/MLEst.R | 22 +++++++++++----------- R/WEDF.test.R | 2 +- R/WLK.test.R | 39 ++++++++++++++++++++++++++++++++------- R/WLP.test.R | 4 ++-- R/WNS.test.R | 2 +- R/WPP.test.R | 2 +- man/CF.test.Rd | 2 +- man/EDF_NS.test.Rd | 2 +- man/EWGoF-package.Rd | 8 ++++---- man/LK.test.Rd | 8 ++++---- man/LRI.test.Rd | 6 +++--- man/WEDF.test.Rd | 2 +- man/WLK.test.Rd | 19 ++++++++++++++----- man/WLP.test.Rd | 15 +++++---------- man/WNS.test.Rd | 12 ++---------- man/WPP.test.Rd | 8 ++------ src/EWGoF_init.c |only src/GoFHe.cpp | 1 - 26 files changed, 123 insertions(+), 105 deletions(-)
Title: Wrapper Package for Design of Experiments Functionality
Description: Various kinds of designs for
(industrial) experiments can be created. The package uses, and sometimes enhances,
design generation routines from other packages.
So far, response surface designs from package rsm, latin hypercube
samples from packages lhs and DiceDesign, and
D-optimal designs from package AlgDesign have been implemented.
Author: Ulrike Groemping [aut, cre],
Lenth Russ [ctb]
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between DoE.wrapper versions 0.8-10 dated 2014-09-29 and 0.9 dated 2017-09-15
DESCRIPTION | 18 - MD5 | 38 +-- NAMESPACE | 1 R/Dopt.design.R | 377 ++++++++++++++++++++------------------- R/oldrsmfunctions.R | 21 ++ inst/NEWS | 16 + man/CentralCompositeDesigns.Rd | 2 man/DoE.wrapper-package.Rd | 2 man/Dopt.augment.Rd | 2 man/Dopt.design.Rd | 11 - man/bbd.design.Rd | 2 man/ccd.augment.Rd | 2 man/ccd.design.Rd | 2 man/lhs.design.Rd | 2 man/optimality.criteria.Rd | 2 man/rsmformula.Rd | 2 tests/Dopt.test.Rout.save | 28 +- tests/bbd.test.Rout.save | 18 + tests/ccd.augment.test.Rout.save | 18 + tests/qua.design.test.Rout.save | 15 + 20 files changed, 331 insertions(+), 248 deletions(-)
Title: Creates a Neighbourhood Using Locality Sensitive Hashing for
Gaussian Projections
Description: Uses locality sensitive hashing and creates a neighbourhood graph for a data set and calculates the adjusted rank index value for the same. It uses Gaussian random planes to decide the nature of a given point. Datar, Mayur, Nicole Immorlica, Piotr Indyk, and Vahab S. Mirrokni(2004) <doi:10.1145/997817.997857>.
Author: Aritra Banerjee
Maintainer: Aritra Banerjee <aritra306@gmail.com>
Diff between AurieLSHGaussian versions 0.1.0 dated 2017-09-13 and 0.2.0 dated 2017-09-15
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NAMESPACE | 3 ++- 3 files changed, 9 insertions(+), 8 deletions(-)
More information about AurieLSHGaussian at CRAN
Permanent link
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.6.3) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package. Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and Expat) are provided on CRAN.
Author: Roger Bivand [cre, aut],
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.2-8 dated 2017-07-01 and 1.2-10 dated 2017-09-15
ChangeLog | 32 ++++++++++++++++++++++++ DESCRIPTION | 8 +++--- MD5 | 21 ++++++++-------- build/vignette.rds |binary configure | 52 ++++++++++++++++++++-------------------- configure.ac | 34 +++++++++++++------------- inst/ChangeLog | 32 ++++++++++++++++++++++++ inst/SVN_VERSION | 2 - inst/doc/OGR_shape_encoding.pdf |binary src/Makevars.win | 42 +++++++++++++++++++++++--------- src/projectit.cpp | 9 ++++-- tools |only 12 files changed, 161 insertions(+), 71 deletions(-)
Title: Automated Satellite Image Processing
Description: Efficiently perform complex satellite image processes automatically with minimum inputs.
Functions facilitate more controls on the user to specify how the function needs to be executed by offering more customization options and provide more functionalities.
The functions are designed to identify the type of input satellite images and perform accordingly.
Also, some functions are giving options to perform multiple satellite data (even from different types) in single run.
Package currently supports satellite images from most widely used Landsat 4,5,7 and 8 and ASTER L1T data.
The primary applications of this package are given below.
1. Conversion of optical bands to top of atmosphere reflectance.
2. Conversion of thermal bands to corresponding temperature images.
3. Derive application oriented products directly from source satellite image bands.
4. Compute user defined equation and produce corresponding image product.
5. Other basic tools for satellite image processing.
REFERENCES.
i. Chander and Markham (2003) <doi:10.1109/TGRS.2003.818464>.
ii. Roy et.al, (2014) <doi:10.1016/j.rse.2014.02.001>.
iii. Abrams (2000) <doi:10.1080/014311600210326>.
Author: M J Riyas [aut, cre],
T H Syed [aut]
Maintainer: M J Riyas <riyasmjgeo@gmail.com>
Diff between ASIP versions 0.3 dated 2017-07-20 and 0.3.2 dated 2017-09-15
DESCRIPTION | 17 +++++++++++------ MD5 | 40 +++++++++++++++++++++------------------- NAMESPACE | 1 + R/arvi.R | 6 +++--- R/aster_temp.R |only R/aster_toa.R | 6 +----- R/crop.R | 4 ++-- R/custom_eqn.R | 4 ++-- R/dn2toa.R | 4 ++-- R/gemi.R | 4 ++-- R/gvmi.R | 4 ++-- R/msavi.R | 4 ++-- R/multi_indices.R | 25 ++++++++----------------- R/ndbi.R | 4 ++-- R/ndvi.R | 30 ++++++++++++++++++++++++------ R/ndwi.R | 4 ++-- R/pavi.R | 4 ++-- R/thermal.R | 4 ++-- man/arvi.Rd | 2 +- man/aster_temp.Rd |only man/aster_toa.Rd | 6 +----- man/ndvi.Rd | 17 ++++++++++++++--- 22 files changed, 105 insertions(+), 85 deletions(-)
Title: Flexible Mediation Analysis Using Natural Effect Models
Description: Run flexible mediation analyses using natural effect models as described in
Lange, Vansteelandt and Bekaert (2012) <DOI:10.1093/aje/kwr525>,
Vansteelandt, Bekaert and Lange (2012) <DOI:10.1515/2161-962X.1014>
and Loeys, Moerkerke, De Smet, Buysse, Steen and Vansteelandt (2013) <DOI:10.1080/00273171.2013.832132>.
Author: Johan Steen [aut, cre],
Tom Loeys [aut],
Beatrijs Moerkerke [aut],
Stijn Vansteelandt [aut],
Joris Meys [ctb] (technical support),
Theis Lange [ctb] (valuable suggestions),
Joscha Legewie [ctb]
Maintainer: Johan Steen <johan.steen@gmail.com>
Diff between medflex versions 0.6-1 dated 2017-02-22 and 0.6-4 dated 2017-09-15
DESCRIPTION | 15 +-- MD5 | 32 +++---- NEWS | 17 ++++ R/neImpute.R | 47 +++++------ R/neLht.R | 202 ++++++++++++++++++++++++------------------------ R/neModel.R | 20 ++-- R/neWeight.R | 33 ++++--- R/utils.R | 40 +++++---- build/vignette.rds |binary data/UPBdata.rda |binary inst/CITATION | 25 +++-- inst/doc/medflex.R | 2 inst/doc/medflex.pdf |binary inst/doc/sandwich.pdf |binary man/neImpute.default.Rd | 5 - man/neImpute.formula.Rd | 2 man/neWeight.default.Rd | 2 17 files changed, 238 insertions(+), 204 deletions(-)
Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <http://glottolog.org> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <http://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://ropensci.github.io/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching. In addition, package provides an ability to download data from typological databases such as WALS, AUTOTYP and others.
Author: George Moroz
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between lingtypology versions 1.0.6 dated 2017-08-16 and 1.0.7 dated 2017-09-15
DESCRIPTION | 6 - MD5 | 18 ++-- NEWS | 10 ++ R/map.feature.R | 74 ++++++++++--------- inst/doc/lingtypology.R | 40 ++++++---- inst/doc/lingtypology.Rmd | 124 +++++++++++++++++--------------- inst/doc/lingtypology.html | 149 ++++++++++++++++++++------------------- inst/doc/manual/lingtypology.pdf |binary man/map.feature.Rd | 48 ++++-------- vignettes/lingtypology.Rmd | 124 +++++++++++++++++--------------- 10 files changed, 316 insertions(+), 277 deletions(-)
Title: Ridgeline Plots in 'ggplot2'
Description: Ridgeline plots provide a convenient way of visualizing changes in distributions over time or space. This package enables the creation of such plots in 'ggplot2'.
Author: Claus O. Wilke [cre, aut],
RStudio [cph] (Copyright for ggplot2 code copied to ggridges)
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between ggridges versions 0.4.0 dated 2017-09-14 and 0.4.1 dated 2017-09-15
ggridges-0.4.0/ggridges/tests/testthat/test_geom_joy.R |only ggridges-0.4.0/ggridges/tests/testthat/test_stat_joy.R |only ggridges-0.4.0/ggridges/tests/testthat/test_theme_joy.R |only ggridges-0.4.1/ggridges/DESCRIPTION | 9 ++--- ggridges-0.4.1/ggridges/MD5 | 18 +++++----- ggridges-0.4.1/ggridges/NEWS | 4 ++ ggridges-0.4.1/ggridges/tests/testthat/Rplots.pdf |binary ggridges-0.4.1/ggridges/tests/testthat/test_geom_density_ridges.R |only ggridges-0.4.1/ggridges/tests/testthat/test_geom_gradient.R | 2 + ggridges-0.4.1/ggridges/tests/testthat/test_geom_vridgeline.R | 2 + ggridges-0.4.1/ggridges/tests/testthat/test_scale_cyclical.R | 2 + ggridges-0.4.1/ggridges/tests/testthat/test_stat_density_ridges.R |only ggridges-0.4.1/ggridges/tests/testthat/test_theme_ridges.R |only 13 files changed, 23 insertions(+), 14 deletions(-)
Title: Joyplots in 'ggplot2'
Description: Joyplots provide a convenient way of visualizing changes in distributions over time or space. This package enables the creation of such plots in 'ggplot2'.
Author: Claus O. Wilke [cre, aut],
RStudio [cph] (Copyright for ggplot2 code copied to ggjoy)
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between ggjoy versions 0.3.0 dated 2017-07-30 and 0.4.0 dated 2017-09-15
ggjoy-0.3.0/ggjoy/R/data.R |only ggjoy-0.3.0/ggjoy/R/geoms-gradient.R |only ggjoy-0.3.0/ggjoy/R/geoms.R |only ggjoy-0.3.0/ggjoy/R/scale-cyclical.R |only ggjoy-0.3.0/ggjoy/R/stats.R |only ggjoy-0.3.0/ggjoy/R/theme.R |only ggjoy-0.3.0/ggjoy/R/utils_ggplot2.R |only ggjoy-0.3.0/ggjoy/data |only ggjoy-0.3.0/ggjoy/man/Catalan_elections.Rd |only ggjoy-0.3.0/ggjoy/man/figures |only ggjoy-0.3.0/ggjoy/man/geom_joy.Rd |only ggjoy-0.3.0/ggjoy/man/geom_ridgeline.Rd |only ggjoy-0.3.0/ggjoy/man/geom_ridgeline_gradient.Rd |only ggjoy-0.3.0/ggjoy/man/lincoln_weather.Rd |only ggjoy-0.3.0/ggjoy/man/scale_cyclical.Rd |only ggjoy-0.3.0/ggjoy/man/stat_binline.Rd |only ggjoy-0.3.0/ggjoy/man/stat_joy.Rd |only ggjoy-0.3.0/ggjoy/man/theme_joy.Rd |only ggjoy-0.4.0/ggjoy/DESCRIPTION | 24 +++---- ggjoy-0.4.0/ggjoy/MD5 | 71 ++++++++++++----------- ggjoy-0.4.0/ggjoy/NAMESPACE | 30 --------- ggjoy-0.4.0/ggjoy/NEWS | 9 ++ ggjoy-0.4.0/ggjoy/R/ggjoy.R | 35 +++++++++++ ggjoy-0.4.0/ggjoy/README.md | 52 +++------------- ggjoy-0.4.0/ggjoy/inst/doc/gallery.Rmd | 2 ggjoy-0.4.0/ggjoy/inst/doc/gallery.html | 5 - ggjoy-0.4.0/ggjoy/inst/doc/introduction.R | 6 - ggjoy-0.4.0/ggjoy/inst/doc/introduction.Rmd | 22 ++++++- ggjoy-0.4.0/ggjoy/inst/doc/introduction.html | 48 +++++++++++++-- ggjoy-0.4.0/ggjoy/man/ggjoy.Rd | 9 ++ ggjoy-0.4.0/ggjoy/tests |only ggjoy-0.4.0/ggjoy/vignettes/gallery.Rmd | 2 ggjoy-0.4.0/ggjoy/vignettes/introduction.Rmd | 22 ++++++- 33 files changed, 201 insertions(+), 136 deletions(-)