Title: Client for the YouTube API
Description: Get comments posted on YouTube videos, information on how many
times a video has been liked, search for videos with particular content, and
much more. You can also scrape captions from a few videos. To learn more about
the YouTube API, see <https://developers.google.com/youtube/v3/>.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between tuber versions 0.9.0 dated 2017-05-28 and 0.9.1 dated 2017-09-19
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 5 +++++ R/get_playlist_items.R | 3 ++- R/get_playlists.R | 5 +---- R/get_video_details.R | 15 +++++++++------ build/vignette.rds |binary inst/doc/tuber-ex.html | 4 ++-- man/get_playlists.Rd | 3 +-- man/get_video_details.Rd | 10 ++++++++-- 10 files changed, 41 insertions(+), 30 deletions(-)
Title: Tools for Post-Selection Inference
Description: New tools for post-selection inference, for use
with forward stepwise regression, least angle regression, the
lasso, and the many means problem. The lasso function implements Gaussian, logistic and Cox survival models.
Author: Ryan Tibshirani, Rob Tibshirani, Jonathan Taylor,
Joshua Loftus, Stephen Reid
Maintainer: Rob Tibshirani <tibs@stanford.edu>
Diff between selectiveInference versions 1.2.2 dated 2017-01-16 and 1.2.3 dated 2017-09-19
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NAMESPACE | 2 +- man/fixedLassoInf.Rd | 10 +++++----- src/selinf_init.c |only 5 files changed, 14 insertions(+), 13 deletions(-)
More information about selectiveInference at CRAN
Permanent link
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for working with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 1.14 dated 2017-08-23 and 1.15 dated 2017-09-19
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- build/partial.rdb |binary inst/NEWS | 11 +++++++++++ inst/NEWS.Rd | 8 ++++++++ inst/include/pomp.h | 47 +++++++++++++++++++++++++++++++++++++++++++++++ man/pomp.Rd | 2 +- man/sir.Rd | 2 +- src/dprocess.c | 2 -- src/initstate.c | 4 +--- src/pomp.h | 47 +++++++++++++++++++++++++++++++++++++++++++++++ src/pomp_fun.c | 10 +++++----- src/pomp_internal.h | 2 +- src/probe_acf.c | 2 +- src/simulate.c | 4 ++-- src/skeleton.c | 5 ----- src/ssa.c | 1 - src/trajectory.c | 5 ----- 18 files changed, 146 insertions(+), 48 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects at the mean or average marginal effects from
statistical models and returns the result as tidy data frames. These
data frames are ready to use with the 'ggplot2'-package.
Marginal effects can be calculated for many different models. Interaction
terms, splines and polynomial terms are also supported. The two main
functions are 'ggpredict()' and 'ggaverage()', however, there are
some convenient wrapper-functions especially for polynomials or
interactions. There is a generic 'plot()'-method to plot the results
using 'ggplot2'.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 0.2.1 dated 2017-08-22 and 0.2.2 dated 2017-09-19
DESCRIPTION | 18 MD5 | 42 +- NAMESPACE | 11 NEWS.md | 132 +++--- R/emm.R | 18 R/getter.R | 255 +++++++----- R/ggaverage.R | 339 ++++++++-------- R/ggeffect.R | 30 - R/ggpredict.R | 840 +++++++++++++++++++++--------------------- R/plot.R | 717 ++++++++++++++++++----------------- R/predictions.R | 291 ++++++++++---- R/utils.R | 212 +++++----- R/utils_expand_data_to_grid.R | 26 + R/utils_link_inverse.R | 26 + R/utils_model_family.R | 120 +++--- R/utils_model_frame.R | 4 R/utils_model_function.R | 3 inst/doc/marginaleffects.html | 6 man/get_title.Rd | 18 man/ggeffect.Rd | 7 man/ggpredict.Rd | 12 man/plot.Rd | 19 22 files changed, 1724 insertions(+), 1422 deletions(-)
Title: Inventory Models
Description: Determination of the optimal policy in inventory problems from a game-theoretic perspective.
Author: Alejandro Saavedra Nieves
Maintainer: Alejandro Saavedra Nieves <alejandro.saavedra.nieves@gmail.com>
Diff between Inventorymodel versions 1.0.4 dated 2017-05-11 and 1.0.5 dated 2017-09-19
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/SOC.R | 6 +++--- man/SOC.Rd | 8 ++++---- 4 files changed, 14 insertions(+), 14 deletions(-)
More information about Inventorymodel at CRAN
Permanent link
Title: Facilitates Clustered Binary Data Generation, and Estimation of
Intracluster Correlation Coefficient (ICC) for Binary Data
Description: Assists in generating binary clustered data, estimates of Intracluster Correlation coefficient (ICC) for binary response in 16 different methods, and 5 different types of confidence intervals.
Author: Akhtar Hossain [aut, cre],
Hrishikesh Chakraborty [aut]
Maintainer: Akhtar Hossain <mhossain@email.sc.edu>
Diff between ICCbin versions 1.0 dated 2016-12-11 and 1.1 dated 2017-09-19
DESCRIPTION | 15 ++- MD5 | 12 +-- NAMESPACE | 2 R/iccbin.R | 224 ++++++++++++++++++++++++++++++++++++++++------------------ R/rcbin.R | 31 +++----- man/iccbin.Rd | 79 ++++++++++++-------- man/rcbin.Rd | 19 ++-- 7 files changed, 244 insertions(+), 138 deletions(-)
Title: Surrogate Residuals for Ordinal and General Regression Models
Description: An implementation of the surrogate approach to residuals and
diagnostics for ordinal and general regression models; for details, see Liu
and Zhang (2017) <doi:10.1080/01621459.2017.1292915>. These residuals can be
used to construct standard residual plots for model diagnostics (e.g.,
residual-vs-fitted value plots, residual-vs-covariate plots, Q-Q plots, etc.).
The package also provides an 'autoplot' function for producing standard
diagnostic plots using 'ggplot2' graphics. The package currently supports
cumulative link models from packages 'MASS', 'ordinal', 'rms', and 'VGAM'.
Support for binary regression models using the standard 'glm' function is also
available.
Author: Brandon Greenwell [aut, cre],
Andrew McCarthy [aut],
Brad Boehmke [aut],
Dungang Liu [ctb]
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between sure versions 0.1.2 dated 2017-08-20 and 0.2.0 dated 2017-09-19
DESCRIPTION | 8 MD5 | 41 ++- NAMESPACE | 4 NEWS.md | 8 R/autoplot.R | 429 +++++++++++++++++++++------------------- R/data.R | 62 +++++ R/resids.R | 124 ++++------- R/surrogate.R |only R/utils.R | 161 ++++++++++++--- README.md | 11 - data/df4.RData |only data/df5.RData |only man/autoplot.resid.Rd | 71 +++--- man/df1.Rd | 2 man/df2.Rd | 2 man/df3.Rd | 2 man/df4.Rd |only man/df5.Rd |only man/getFittedProbs.Rd |only man/resids.Rd | 35 +-- man/surrogate.Rd |only tests/testthat/test-auoplot.R | 52 ++-- tests/testthat/test-resids.R | 26 -- tests/testthat/test-surrogate.R |only tools |only 25 files changed, 602 insertions(+), 436 deletions(-)
Title: Enhanced Quantitative Trading Modelling
Description: Download and organize historical market data from multiple sources like Yahoo (<https://finance.yahoo.com>), Google (<https://www.google.com/finance>), Finam (<https://www.finam.ru/profile/moex-akcii/sberbank/export/>), MOEX (<https://www.moex.com/en/derivatives/contracts.aspx>) and IQFeed (<https://www.iqfeed.net/symbolguide/index.cfm?symbolguide=lookup>). Code your trading algorithms in modern C++11 with powerful event driven tick processing API including trading costs and exchange communication latency and transform detailed data seamlessly into R. In just few lines of code you will be able to visualize every step of your trading model from tick data to multi dimensional heat maps.
Author: Stanislav Kovalevsky
Maintainer: Stanislav Kovalevsky <so.kovalevsky@gmail.com>
Diff between QuantTools versions 0.5.5 dated 2017-05-19 and 0.5.6 dated 2017-09-19
DESCRIPTION | 8 MD5 | 59 ++-- NEWS.md | 15 + R/RcppExports.R | 40 +- R/bw.R | 2 R/doc_Order.R | 3 R/doc_Processor.R | 45 ++- R/doc_Tick.R | 5 R/get_market_data.R | 2 R/iqfeed.R | 492 ++++++++++++++++++++++------------ R/multi_heatmap.R | 2 R/plot_dts.R | 97 ++++++ R/store_market_data.R | 2 inst/examples/bbands.R | 1 inst/examples/bbands_market_maker.R |only inst/examples/bbands_market_maker.cpp |only inst/examples/sma_crossover.R | 1 inst/include/BackTest/Candle.h | 59 +++- inst/include/BackTest/Order.h | 56 +++ inst/include/BackTest/Processor.h | 209 +++++++++++--- inst/include/BackTest/Statistics.h | 26 + inst/include/BackTest/Tick.h | 3 inst/include/BackTest/Trade.h | 2 inst/include/Indicators/Rsi.h | 35 +- inst/include/Utils.h |only man/cpp_Order.Rd | 3 man/cpp_Processor.Rd | 100 ++++++ man/cpp_Tick.Rd | 8 src/RcppExports.cpp | 40 +- src/back_test.cpp | 4 src/init.c | 80 ++--- src/to_candles.cpp | 6 32 files changed, 1038 insertions(+), 367 deletions(-)
Title: Primal or Dual Cone Projections with Routines for Constrained
Regression
Description: Routines doing cone projection and quadratic programming, as well as doing estimation and inference for constrained parametric regression and shape-restricted regression problems.
Author: Mary C. Meyer and Xiyue Liao
Maintainer: Xiyue Liao <liaoxiyue2011@gmail.com>
Diff between coneproj versions 1.11 dated 2016-09-01 and 1.12 dated 2017-09-19
DESCRIPTION | 10 +-- MD5 | 15 +++-- R/coneproj.R | 116 +++++++++++++++++++++++++++++++++----------- man/check_irred.Rd | 6 +- man/coneA.Rd | 8 +-- man/coneB.Rd | 12 ++-- man/qprog.Rd | 8 +-- src/coneproj.cpp | 71 ++++++++++++++++++-------- src/registerDynamicSymbol.c |only 9 files changed, 171 insertions(+), 75 deletions(-)
Title: Visualizing Generalized Canonical Discriminant and Canonical
Correlation Analysis
Description: Functions for computing and visualizing
generalized canonical discriminant analyses and canonical correlation analysis
for a multivariate linear model.
Traditional canonical discriminant analysis is restricted to a one-way 'MANOVA'
design and is equivalent to canonical correlation analysis between a set of quantitative
response variables and a set of dummy variables coded from the factor variable.
The 'candisc' package generalizes this to higher-way 'MANOVA' designs
for all factors in a multivariate linear model,
computing canonical scores and vectors for each term. The graphic functions provide low-rank (1D, 2D, 3D)
visualizations of terms in an 'mlm' via the 'plot.candisc' and 'heplot.candisc' methods. Related plots are
now provided for canonical correlation analysis when all predictors are quantitative.
Author: Michael Friendly [aut, cre], John Fox [aut]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between candisc versions 0.7-2 dated 2016-11-10 and 0.8-0 dated 2017-09-19
DESCRIPTION | 18 ++++++++---------- MD5 | 28 ++++++++++++++++++---------- NEWS | 8 ++++++++ R/plot.candisc.R | 17 ++++++++++++++--- build |only data/Grass.rda |binary data/HSB.rda |binary data/Wine.RData |binary data/Wolves.rda |binary inst |only man/HSB.Rd | 2 +- man/candisc-package.Rd | 8 +++++--- man/heplot.candisc.Rd | 4 ++-- vignettes |only 14 files changed, 56 insertions(+), 29 deletions(-)
Title: Bayes Factors, Model Choice and Variable Selection in Linear
Models
Description: Conceived to calculate Bayes factors in linear models and then to provide a formal Bayesian answer to testing and variable selection problems. From a theoretical side, the emphasis in this package is placed on the prior distributions and it allows a wide range of them: Jeffreys (1961); Zellner and Siow(1980)<DOI:10.1007/bf02888369>; Zellner and Siow(1984); Zellner (1986)<DOI:10.2307/2233941>; Fernandez et al. (2001)<DOI:10.1016/S0304-4076(00)00076-2>; Liang et al. (2008)<DOI:10.1198/016214507000001337> and Bayarri et al. (2012)<DOI:10.1214/12-aos1013>. The interaction with the package is through a friendly interface that syntactically mimics the well-known lm() command of R. The resulting objects can be easily explored providing the user very valuable information (like marginal, joint and conditional inclusion probabilities of potential variables; the highest posterior probability model, HPM; the median probability model, MPM) about the structure of the true -data generating- model. Additionally, this package incorporates abilities to handle problems with a large number of potential explanatory variables through parallel and heuristic versions of the main commands, Garcia-Donato and Martinez-Beneito (2013)<DOI:10.1080/01621459.2012.742443>.
Author: Gonzalo Garcia-Donato and Anabel Forte
Maintainer: Anabel Forte <anabel.forte@uv.es>
Diff between BayesVarSel versions 1.7.0 dated 2016-11-18 and 1.7.1 dated 2017-09-19
DESCRIPTION | 10 +++++----- MD5 | 25 ++++++++++++++----------- NAMESPACE | 10 +++++----- R/Btest.R | 16 ++++++++-------- R/Bvs.R | 6 +++++- R/GibbsBvs.R | 6 +++++- R/PBvs.R | 5 ++++- data/SDM.rdata |only man/Btest.Rd | 10 +++++----- man/Bvs.Rd | 2 +- man/GibbsBvs.Rd | 6 +++--- man/PBvs.Rd | 7 ++++--- man/SDM.Rd |only man/bayesvarsel-package.rd | 4 ++-- src/BayesVarSel_init.c |only 15 files changed, 61 insertions(+), 46 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre],
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between sparklyr versions 0.6.2 dated 2017-08-13 and 0.6.3 dated 2017-09-19
sparklyr-0.6.2/sparklyr/inst/livy/spark-2.0.0/utils.scala |only sparklyr-0.6.2/sparklyr/java/spark-2.0.0/utils.scala |only sparklyr-0.6.2/sparklyr/tests/testthat/log4j.spark.log.2017-07-31 |only sparklyr-0.6.2/sparklyr/tests/testthat/log4j.spark.log.2017-08-09 |only sparklyr-0.6.3/sparklyr/DESCRIPTION | 12 sparklyr-0.6.3/sparklyr/MD5 | 236 - sparklyr-0.6.3/sparklyr/NAMESPACE | 13 sparklyr-0.6.3/sparklyr/NEWS.md | 114 sparklyr-0.6.3/sparklyr/R/connection_viewer.R | 4 sparklyr-0.6.3/sparklyr/R/core_invoke.R | 6 sparklyr-0.6.3/sparklyr/R/core_serialize.R | 2 sparklyr-0.6.3/sparklyr/R/data_interface.R | 74 sparklyr-0.6.3/sparklyr/R/dplyr_spark.R | 2 sparklyr-0.6.3/sparklyr/R/dplyr_spark_connection.R | 47 sparklyr-0.6.3/sparklyr/R/dplyr_spark_table.R | 6 sparklyr-0.6.3/sparklyr/R/install_spark.R | 2 sparklyr-0.6.3/sparklyr/R/install_spark_windows.R | 5 sparklyr-0.6.3/sparklyr/R/livy_connection.R | 117 sparklyr-0.6.3/sparklyr/R/livy_service.R | 17 sparklyr-0.6.3/sparklyr/R/livy_sources.R | 3 sparklyr-0.6.3/sparklyr/R/ml_classification_evaluators.R | 23 sparklyr-0.6.3/sparklyr/R/ml_decision_tree.R | 85 sparklyr-0.6.3/sparklyr/R/ml_feature_transformation.R | 88 sparklyr-0.6.3/sparklyr/R/ml_gradient_boosted_tree.R | 117 sparklyr-0.6.3/sparklyr/R/ml_lda.R | 18 sparklyr-0.6.3/sparklyr/R/ml_options.R | 3 sparklyr-0.6.3/sparklyr/R/ml_pca.R | 10 sparklyr-0.6.3/sparklyr/R/ml_random_forest.R | 111 sparklyr-0.6.3/sparklyr/R/ml_utils.R | 1 sparklyr-0.6.3/sparklyr/R/na_actions.R | 2 sparklyr-0.6.3/sparklyr/R/project_template.R |only sparklyr-0.6.3/sparklyr/R/sdf_interface.R | 215 - sparklyr-0.6.3/sparklyr/R/sdf_ml.R |only sparklyr-0.6.3/sparklyr/R/sdf_wrapper.R | 2 sparklyr-0.6.3/sparklyr/R/shell_connection.R | 40 sparklyr-0.6.3/sparklyr/R/spark_apply.R | 34 sparklyr-0.6.3/sparklyr/R/spark_compile.R | 26 sparklyr-0.6.3/sparklyr/R/utils.R | 63 sparklyr-0.6.3/sparklyr/R/worker_apply.R | 37 sparklyr-0.6.3/sparklyr/R/worker_log.R | 6 sparklyr-0.6.3/sparklyr/R/worker_main.R | 39 sparklyr-0.6.3/sparklyr/R/yarn_cluster.R | 143 sparklyr-0.6.3/sparklyr/README.md | 68 sparklyr-0.6.3/sparklyr/inst/java/sparklyr-1.5-2.10.jar |binary sparklyr-0.6.3/sparklyr/inst/java/sparklyr-1.6-2.10.jar |binary sparklyr-0.6.3/sparklyr/inst/java/sparklyr-2.0-2.11.jar |binary sparklyr-0.6.3/sparklyr/inst/java/sparklyr-2.1-2.11.jar |binary sparklyr-0.6.3/sparklyr/inst/java/sparklyr-2.2-2.11.jar |binary sparklyr-0.6.3/sparklyr/inst/livy/spark-1.5.2/stream.scala | 6 sparklyr-0.6.3/sparklyr/inst/livy/spark-2.0.0/repartition.scala |only sparklyr-0.6.3/sparklyr/inst/rstudio/templates |only sparklyr-0.6.3/sparklyr/java/spark-1.5.2/backend.scala | 87 sparklyr-0.6.3/sparklyr/java/spark-1.5.2/channel.scala | 4 sparklyr-0.6.3/sparklyr/java/spark-1.5.2/logger.scala | 4 sparklyr-0.6.3/sparklyr/java/spark-1.5.2/shell.scala | 7 sparklyr-0.6.3/sparklyr/java/spark-1.5.2/stream.scala | 6 sparklyr-0.6.3/sparklyr/java/spark-1.6.0/rdd.scala | 15 sparklyr-0.6.3/sparklyr/java/spark-1.6.0/rscript.scala | 15 sparklyr-0.6.3/sparklyr/java/spark-1.6.0/sources.scala | 90 sparklyr-0.6.3/sparklyr/java/spark-1.6.0/worker.scala | 16 sparklyr-0.6.3/sparklyr/java/spark-2.0.0/repartition.scala |only sparklyr-0.6.3/sparklyr/man/download_scalac.Rd | 6 sparklyr-0.6.3/sparklyr/man/ft_binarizer.Rd | 7 sparklyr-0.6.3/sparklyr/man/ft_bucketizer.Rd | 4 sparklyr-0.6.3/sparklyr/man/ft_count_vectorizer.Rd | 6 sparklyr-0.6.3/sparklyr/man/ft_discrete_cosine_transform.Rd | 5 sparklyr-0.6.3/sparklyr/man/ft_elementwise_product.Rd | 5 sparklyr-0.6.3/sparklyr/man/ft_index_to_string.Rd | 4 sparklyr-0.6.3/sparklyr/man/ft_one_hot_encoder.Rd | 8 sparklyr-0.6.3/sparklyr/man/ft_quantile_discretizer.Rd | 5 sparklyr-0.6.3/sparklyr/man/ft_regex_tokenizer.Rd | 4 sparklyr-0.6.3/sparklyr/man/ft_sql_transformer.Rd | 30 sparklyr-0.6.3/sparklyr/man/ft_stop_words_remover.Rd |only sparklyr-0.6.3/sparklyr/man/ft_string_indexer.Rd | 5 sparklyr-0.6.3/sparklyr/man/ft_tokenizer.Rd | 4 sparklyr-0.6.3/sparklyr/man/ft_vector_assembler.Rd | 4 sparklyr-0.6.3/sparklyr/man/livy_config.Rd | 21 sparklyr-0.6.3/sparklyr/man/livy_service.Rd | 8 sparklyr-0.6.3/sparklyr/man/ml_binary_classification_eval.Rd | 2 sparklyr-0.6.3/sparklyr/man/ml_classification_eval.Rd | 3 sparklyr-0.6.3/sparklyr/man/ml_create_dummy_variables.Rd | 2 sparklyr-0.6.3/sparklyr/man/ml_decision_tree.Rd | 33 sparklyr-0.6.3/sparklyr/man/ml_gradient_boosted_trees.Rd | 45 sparklyr-0.6.3/sparklyr/man/ml_lda.Rd | 9 sparklyr-0.6.3/sparklyr/man/ml_options.Rd | 5 sparklyr-0.6.3/sparklyr/man/ml_pca.Rd | 5 sparklyr-0.6.3/sparklyr/man/ml_random_forest.Rd | 45 sparklyr-0.6.3/sparklyr/man/sdf_mutate.Rd | 2 sparklyr-0.6.3/sparklyr/man/sdf_partition.Rd | 2 sparklyr-0.6.3/sparklyr/man/sdf_predict.Rd | 2 sparklyr-0.6.3/sparklyr/man/sdf_project.Rd |only sparklyr-0.6.3/sparklyr/man/sdf_read_column.Rd | 3 sparklyr-0.6.3/sparklyr/man/spark_apply.Rd | 3 sparklyr-0.6.3/sparklyr/man/spark_apply_log.Rd |only sparklyr-0.6.3/sparklyr/man/spark_default_compilation_spec.Rd | 7 sparklyr-0.6.3/sparklyr/man/spark_load_table.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_read_csv.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_read_jdbc.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_read_json.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_read_parquet.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_read_source.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_read_table.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_read_text.Rd |only sparklyr-0.6.3/sparklyr/man/spark_save_table.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_write_csv.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_write_jdbc.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_write_json.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_write_parquet.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_write_source.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_write_table.Rd | 4 sparklyr-0.6.3/sparklyr/man/spark_write_text.Rd |only sparklyr-0.6.3/sparklyr/tests/testthat.R | 9 sparklyr-0.6.3/sparklyr/tests/testthat/data |only sparklyr-0.6.3/sparklyr/tests/testthat/helper-initialize.R | 63 sparklyr-0.6.3/sparklyr/tests/testthat/log4j.spark.log | 1673 +++++++++- sparklyr-0.6.3/sparklyr/tests/testthat/logs |only sparklyr-0.6.3/sparklyr/tests/testthat/test-apply-config.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-compile.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-connect.R | 44 sparklyr-0.6.3/sparklyr/tests/testthat/test-dplyr-lead-lag.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-feature-transformers.R | 3 sparklyr-0.6.3/sparklyr/tests/testthat/test-java.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-livy.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-ml-classification-eval.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-ml-decision-tree.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-ml-gradient-boosted-trees.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-ml-pca.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-ml-random-forest.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-project-template.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-read-write.R | 29 sparklyr-0.6.3/sparklyr/tests/testthat/test-shinyapp.R |only sparklyr-0.6.3/sparklyr/tests/testthat/test-spark-apply.R | 40 sparklyr-0.6.3/sparklyr/tests/testthat/test-yarn-cluster.R |only 133 files changed, 3366 insertions(+), 886 deletions(-)
Title: Labelled Data Utility Functions
Description: Collection of functions dealing with labelled data, like reading and
writing data between R and other statistical software packages like 'SPSS',
'SAS' or 'Stata', and working with labelled data. This includes easy ways
to get, set or change value and variable label attributes, to convert
labelled vectors into factors or numeric (and vice versa), or to deal with
multiple declared missing values.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjlabelled versions 1.0.2 dated 2017-09-11 and 1.0.3 dated 2017-09-19
DESCRIPTION | 13 - MD5 | 22 - NAMESPACE | 2 NEWS | 49 ++-- NEWS.md | 62 +++-- R/get_label.R | 5 R/get_labels.R | 3 R/helpfunctions.R | 45 ++-- R/to_label.R | 457 ++++++++++++++++++++++------------------- inst/doc/intro_sjlabelled.html | 56 ++--- inst/doc/labelleddata.html | 4 man/as_label.Rd | 10 12 files changed, 400 insertions(+), 328 deletions(-)
Title: Wrapper for MUMPS Library
Description: Some basic features of MUMPS (Multifrontal Massively Parallel
sparse direct Solver) are wrapped in a class whose methods can be used
for sequentially solving a sparse linear system (symmetric or not)
with one or many right hand sides (dense or sparse).
There is a possibility to do separately symbolic analysis,
LU (or LDL^t) factorization and system solving.
Author: Serguei Sokol
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between rmumps versions 5.1.1-2 dated 2017-07-08 and 5.1.1-3 dated 2017-09-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 6 ++++++ man/rmumps-package.Rd | 2 +- src/lib/MUMPS_5.1.1/src/dana_aux.F | 3 ++- 5 files changed, 17 insertions(+), 10 deletions(-)
Title: Quasi Variances for Factor Effects in Statistical Models
Description: Functions to compute quasi variances and associated measures of approximation error.
Author: David Firth
Maintainer: David Firth <d.firth@warwick.ac.uk>
Diff between qvcalc versions 0.9-0 dated 2016-03-30 and 0.9-1 dated 2017-09-19
DESCRIPTION | 12 +- MD5 | 14 +- NAMESPACE | 7 + NEWS.md |only R/qvcalc.R | 299 ++++++++++++++++++----------------------------------- R/qvcalc.itempar.R |only R/qvcalc.lm.R |only R/worstErrors.R |only man/plot.qv.Rd | 2 man/qvcalc.Rd | 215 +++++++++++++++++++++++--------------- 10 files changed, 255 insertions(+), 294 deletions(-)
Title: Nowcast Analysis and Create Real-Time Data Basis
Description: Methods and tools for 'forecast' the current state (nowcast) of Brazilian economic time series. It allows: extract information in real time, creating a real time data base; estimate relationship between macroeconomic variables via dynamic factors; forecast time series in previous periods of reference; forecast time series in the current period of reference (nowcasting); recreate a data base simulating the information available in the past for evaluating forecasting models accuracy (pseudo real-time data base).
Author: Guilherme Branco Gomes [aut, cre],
Pedro Costa Ferreira [aut],
Daiane Mattos [aut]
Maintainer: Guilherme Branco Gomes <guilherme.branco@fgv.br>
Diff between nowcasting versions 0.0.82 dated 2017-08-18 and 0.0.90 dated 2017-09-19
nowcasting-0.0.82/nowcasting/R/ajustePIB.R |only nowcasting-0.0.82/nowcasting/R/arrumarVintage.R |only nowcasting-0.0.82/nowcasting/R/forecasting.R |only nowcasting-0.0.82/nowcasting/R/mestri.R |only nowcasting-0.0.82/nowcasting/man/FactorExtraction.Rd |only nowcasting-0.0.82/nowcasting/man/ajustePIB.Rd |only nowcasting-0.0.82/nowcasting/man/arrumarVintage.Rd |only nowcasting-0.0.82/nowcasting/man/forecasting.Rd |only nowcasting-0.0.82/nowcasting/man/get.series.bacen.Rd |only nowcasting-0.0.82/nowcasting/man/kalman_filter_diag.Rd |only nowcasting-0.0.82/nowcasting/man/kalman_smoother_diag.Rd |only nowcasting-0.0.82/nowcasting/man/kalman_update_diag.Rd |only nowcasting-0.0.82/nowcasting/man/mestri.Rd |only nowcasting-0.0.82/nowcasting/man/outliers_correction.Rd |only nowcasting-0.0.82/nowcasting/man/pcatodfm.Rd |only nowcasting-0.0.82/nowcasting/man/smooth_update.Rd |only nowcasting-0.0.90/nowcasting/DESCRIPTION | 15 +- nowcasting-0.0.90/nowcasting/MD5 | 61 ++++---- nowcasting-0.0.90/nowcasting/NAMESPACE | 6 nowcasting-0.0.90/nowcasting/R/Bpanel.R |only nowcasting-0.0.90/nowcasting/R/FactorExtraction.R | 49 ++----- nowcasting-0.0.90/nowcasting/R/PRTDB.R |only nowcasting-0.0.90/nowcasting/R/base_extraction.R | 10 - nowcasting-0.0.90/nowcasting/R/bridge.R |only nowcasting-0.0.90/nowcasting/R/get.series.bacen.R | 17 -- nowcasting-0.0.90/nowcasting/R/giannoneetal2008.R |only nowcasting-0.0.90/nowcasting/R/kalman_filter_diag.R | 11 - nowcasting-0.0.90/nowcasting/R/kalman_smoother_diag.R | 10 - nowcasting-0.0.90/nowcasting/R/kalman_update_diag.R | 11 - nowcasting-0.0.90/nowcasting/R/monqua.R |only nowcasting-0.0.90/nowcasting/R/nowcast.R | 103 ++------------- nowcasting-0.0.90/nowcasting/R/nowcasting.R | 22 +-- nowcasting-0.0.90/nowcasting/R/outliers_correction.R | 27 ++- nowcasting-0.0.90/nowcasting/R/pcatodfm.R | 14 -- nowcasting-0.0.90/nowcasting/R/smooth_update.R | 13 - nowcasting-0.0.90/nowcasting/R/vintage.R |only nowcasting-0.0.90/nowcasting/data/giannoneetal2008.rda |only nowcasting-0.0.90/nowcasting/man/Bpanel.Rd |only nowcasting-0.0.90/nowcasting/man/PRTDB.Rd |only nowcasting-0.0.90/nowcasting/man/base_extraction.Rd | 9 - nowcasting-0.0.90/nowcasting/man/giannoneetal2008.Rd |only nowcasting-0.0.90/nowcasting/man/monqua.Rd |only nowcasting-0.0.90/nowcasting/man/nowcast.Rd | 90 ++----------- nowcasting-0.0.90/nowcasting/man/nowcasting.Rd | 20 +- nowcasting-0.0.90/nowcasting/man/vintage.Rd | 22 +-- 45 files changed, 158 insertions(+), 352 deletions(-)
Title: A Set of Methods for Longitudinal Data Objects
Description: A very simple implementation of a class for
longitudinal data.
Author: R. Gentleman
Maintainer: Arthur Allignol <arthur.allignol@gmail.com>
Diff between lgtdl versions 1.1.4 dated 2017-01-16 and 1.1.5 dated 2017-09-19
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Functions to Operate on Binary Fingerprint Data
Description: Functions to manipulate binary fingerprints
of arbitrary length. A fingerprint is represented by an object of S4 class 'fingerprint'
which is internally represented a vector of integers, such
that each element represents the position in the fingerprint that is set to 1.
The bitwise logical functions in R are overridden so that they can be used directly
with 'fingerprint' objects. A number of distance metrics are also
available (many contributed by Michael Fadock). Fingerprints
can be converted to Euclidean vectors (i.e., points on the unit hypersphere) and
can also be folded using OR. Arbitrary fingerprint formats can be handled via line
handlers. Currently handlers are provided for CDK, MOE and BCI fingerprint data.
Author: Rajarshi Guha <rajarshi.guha@gmail.com>
Maintainer: Rajarshi Guha <rajarshi.guha@gmail.com>
Diff between fingerprint versions 3.5.4 dated 2016-11-12 and 3.5.6 dated 2017-09-19
DESCRIPTION | 19 ++++++++++--------- INDEX |only MD5 | 10 ++++++---- NAMESPACE | 2 +- R/matrix.R | 6 +++++- R/read.R | 2 +- src/registerDynamicSymbol.c |only 7 files changed, 23 insertions(+), 16 deletions(-)
Title: Thematic Cartography
Description: Create and integrate maps in your R workflow. This package allows
various cartographic representations such as proportional symbols, chroropleth,
typology, flows or discontinuities maps. It also offers several features enhancing
the graphic presentation of maps like cartographic palettes, layout
elements (scale, north arrow, title...), labels, legends or access to some
cartographic APIs. See Giraud and Lambert (2017) <doi:10.1007/978-3-319-57336-6_13>.
Author: Timothée Giraud [cre, aut],
Nicolas Lambert [aut],
Ian Fellows [cph] (no overlap algorithm for labels, from wordcloud
package)
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between cartography versions 1.4.2 dated 2017-03-29 and 2.0.0 dated 2017-09-19
cartography-1.4.2/cartography/R/choro.R |only cartography-1.4.2/cartography/R/circles.R |only cartography-1.4.2/cartography/R/getGridData.R |only cartography-1.4.2/cartography/R/propSymbolsChoroLayer2.R |only cartography-1.4.2/cartography/R/propSymbolsLayer2.R |only cartography-1.4.2/cartography/R/propSymbolsTypoLayer2.R |only cartography-1.4.2/cartography/R/typo.R |only cartography-1.4.2/cartography/data/cartography.colors.RData |only cartography-1.4.2/cartography/man/cartography.colors.Rd |only cartography-2.0.0/cartography/DESCRIPTION | 32 cartography-2.0.0/cartography/MD5 | 179 - cartography-2.0.0/cartography/NAMESPACE | 3 cartography-2.0.0/cartography/NEWS | 35 cartography-2.0.0/cartography/R/Package.R | 50 cartography-2.0.0/cartography/R/RcppExports.R |only cartography-2.0.0/cartography/R/barscale.R | 10 cartography-2.0.0/cartography/R/choroLayer.R | 93 cartography-2.0.0/cartography/R/data.R | 26 cartography-2.0.0/cartography/R/discLayer.R | 114 cartography-2.0.0/cartography/R/dotDensityLayer.R | 44 cartography-2.0.0/cartography/R/getBorders.R | 159 - cartography-2.0.0/cartography/R/getBreaks.R | 11 cartography-2.0.0/cartography/R/getFigDim.R | 53 cartography-2.0.0/cartography/R/getGridLayer.R | 241 + cartography-2.0.0/cartography/R/getLinkLayer.R | 110 cartography-2.0.0/cartography/R/getOuterBorders.R | 101 cartography-2.0.0/cartography/R/getTiles.R | 59 cartography-2.0.0/cartography/R/gradLinkLayer.R | 82 cartography-2.0.0/cartography/R/gradLinkTypoLayer.R | 135 cartography-2.0.0/cartography/R/labelLayer.R | 90 cartography-2.0.0/cartography/R/layoutLayer.R | 74 cartography-2.0.0/cartography/R/legends.R | 1679 ++++-------- cartography-2.0.0/cartography/R/north.R | 7 cartography-2.0.0/cartography/R/palettes.R | 25 cartography-2.0.0/cartography/R/propLinkLayer.R | 80 cartography-2.0.0/cartography/R/propSymbolsChoroLayer.R | 211 - cartography-2.0.0/cartography/R/propSymbolsLayer.R | 196 - cartography-2.0.0/cartography/R/propSymbolsTypoLayer.R | 183 - cartography-2.0.0/cartography/R/smoothLayer.R | 67 cartography-2.0.0/cartography/R/sysdata.rda |only cartography-2.0.0/cartography/R/tilesLayer.R | 12 cartography-2.0.0/cartography/R/typoLayer.R | 84 cartography-2.0.0/cartography/R/utils.R |only cartography-2.0.0/cartography/README.md | 171 - cartography-2.0.0/cartography/inst/CITATION | 27 cartography-2.0.0/cartography/inst/doc/cartography.R | 153 - cartography-2.0.0/cartography/inst/doc/cartography.Rmd | 169 - cartography-2.0.0/cartography/inst/doc/cartography.html | 226 - cartography-2.0.0/cartography/inst/shape |only cartography-2.0.0/cartography/man/barscale.Rd | 10 cartography-2.0.0/cartography/man/carto.pal.Rd | 9 cartography-2.0.0/cartography/man/carto.pal.info.Rd | 6 cartography-2.0.0/cartography/man/cartography.Rd | 48 cartography-2.0.0/cartography/man/choroLayer.Rd | 40 cartography-2.0.0/cartography/man/coasts.spdf.Rd | 2 cartography-2.0.0/cartography/man/countries.spdf.Rd | 2 cartography-2.0.0/cartography/man/discLayer.Rd | 57 cartography-2.0.0/cartography/man/dotDensityLayer.Rd | 25 cartography-2.0.0/cartography/man/frame.spdf.Rd | 2 cartography-2.0.0/cartography/man/getBorders.Rd | 36 cartography-2.0.0/cartography/man/getBreaks.Rd | 8 cartography-2.0.0/cartography/man/getFigDim.Rd | 33 cartography-2.0.0/cartography/man/getGridData.Rd | 48 cartography-2.0.0/cartography/man/getGridLayer.Rd | 72 cartography-2.0.0/cartography/man/getLinkLayer.Rd | 43 cartography-2.0.0/cartography/man/getOuterBorders.Rd | 42 cartography-2.0.0/cartography/man/getTiles.Rd | 35 cartography-2.0.0/cartography/man/gradLinkLayer.Rd | 50 cartography-2.0.0/cartography/man/gradLinkTypoLayer.Rd | 59 cartography-2.0.0/cartography/man/graticule.spdf.Rd | 2 cartography-2.0.0/cartography/man/labelLayer.Rd | 48 cartography-2.0.0/cartography/man/layoutLayer.Rd | 11 cartography-2.0.0/cartography/man/legendBarsSymbols.Rd | 27 cartography-2.0.0/cartography/man/legendChoro.Rd | 12 cartography-2.0.0/cartography/man/legendCirclesSymbols.Rd | 47 cartography-2.0.0/cartography/man/legendGradLines.Rd | 11 cartography-2.0.0/cartography/man/legendPropLines.Rd | 15 cartography-2.0.0/cartography/man/legendPropTriangles.Rd | 3 cartography-2.0.0/cartography/man/legendSquaresSymbols.Rd | 29 cartography-2.0.0/cartography/man/legendTypo.Rd | 3 cartography-2.0.0/cartography/man/north.Rd | 7 cartography-2.0.0/cartography/man/nuts0.spdf.Rd | 2 cartography-2.0.0/cartography/man/nuts1.spdf.Rd | 2 cartography-2.0.0/cartography/man/nuts2.spdf.Rd | 2 cartography-2.0.0/cartography/man/nuts3.spdf.Rd | 2 cartography-2.0.0/cartography/man/propLinkLayer.Rd | 50 cartography-2.0.0/cartography/man/propSymbolsChoroLayer.Rd | 65 cartography-2.0.0/cartography/man/propSymbolsLayer.Rd | 78 cartography-2.0.0/cartography/man/propSymbolsTypoLayer.Rd | 56 cartography-2.0.0/cartography/man/smoothLayer.Rd | 49 cartography-2.0.0/cartography/man/tilesLayer.Rd | 12 cartography-2.0.0/cartography/man/typoLayer.Rd | 33 cartography-2.0.0/cartography/man/world.spdf.Rd | 2 cartography-2.0.0/cartography/src |only cartography-2.0.0/cartography/vignettes/cartography.Rmd | 169 - 95 files changed, 3106 insertions(+), 3249 deletions(-)
Title: Multivariate Genomic Selection
Description: Estimating trait heritability and handling overfitting. This package includes a collection of functions for (1) estimating genetic variance-covariances and calculate trait heritability; and (2) handling overfitting by calculating the variance components and the heritability through cross validation.
Author: Zhenyu Jia
Maintainer: Zhenyu Jia <ajia.ucr@gmail.com>
Diff between GSMX versions 1.1 dated 2017-07-24 and 1.2 dated 2017-09-19
DESCRIPTION | 8 +- MD5 | 6 - R/gsm.R | 207 +++++++++++++++++++++++++++++++--------------------- man/GSMX-package.Rd | 4 - 4 files changed, 133 insertions(+), 92 deletions(-)
Title: Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment,
Peak Based Processing, Quantitative Analysis and Visualizations
Description: Makes Nuclear Magnetic Resonance spectroscopy (NMR spectroscopy) data analysis as easy as possible by only requiring a small set of functions to perform an entire analysis. 'speaq' offers the possibility of raw spectra alignment and quantitation but also an analysis based on features whereby the spectra are converted to peaks which are then grouped and turned into features. These features can be processed with any number of statistical tools either included in 'speaq' or available elsewhere on CRAN. More detail can be found in <doi:10.1186/1471-2105-12-405> and <doi:10.1101/138503>.
Author: Charlie Beirnaert, Trung Nghia Vu, Pieter Meysman, Kris Laukens and Dirk Valkenborg
Maintainer: Charlie Beirnaert <charlie_beirnaert@icloud.com>
Diff between speaq versions 2.0.0 dated 2017-05-16 and 2.1.0 dated 2017-09-19
DESCRIPTION | 12 ++++----- MD5 | 46 ++++++++++++++++++----------------- NAMESPACE | 9 ++++++ NEWS.md | 8 ++++++ R/BuildFeatureMatrix.R | 12 ++++++++- R/GetWinedata.subset.R | 8 +++--- R/HMDBsearchR.R |only R/PeakFilling.R | 4 +-- R/ROIplot.R | 7 ++++- R/SCANT.R | 2 + R/Winedata.R | 2 - build/vignette.rds |binary inst/doc/classic_speaq_vignette.Rmd | 2 - inst/doc/classic_speaq_vignette.html | 8 +++--- inst/doc/speaq2_illustrations.R | 3 -- inst/doc/speaq2_illustrations.Rmd | 5 +-- inst/doc/speaq2_illustrations.html | 11 +++----- man/BuildFeatureMatrix.Rd | 5 +++ man/GetWinedata.subset.Rd | 2 - man/HMDBsearchR.Rd |only man/PeakFilling.Rd | 4 +-- man/SCANT.Rd | 3 ++ man/Winedata.Rd | 2 - vignettes/classic_speaq_vignette.Rmd | 2 - vignettes/speaq2_illustrations.Rmd | 5 +-- 25 files changed, 100 insertions(+), 62 deletions(-)
Title: Clustering and Visualization of Mixed-Type Data
Description: Provides utilities for clustering subjects and variables of mixed data types. Similarities between subjects are measured by Gower's general similarity coefficient with an extension of Podani for ordinal variables. Similarities between variables can be assessed i) by combination of appropriate measures of association for different pairs of data types or ii) based on distance correlation. Alternatively, variables can also be clustered by the 'ClustOfVar' approach. The main feature of the package is the generation of a mixed-data heatmap. For visualizing similarities between either subjects or variables, a heatmap of the corresponding distance matrix can be drawn. Associations between variables can be explored by a 'confounder plot', which allows visual detection of possible confounding, collinear, or surrogate factors for some variables of primary interest. Distance matrices and dendrograms for subjects and variables can be derived and used for further visualizations and applications. This work was supported by BMBF grant 01ZX1609B, Germany.
Author: M. Hummel, D. Edelmann, A. Kopp-Schneider
Maintainer: Manuela Hummel <m.hummel@dkfz.de>
Diff between CluMix versions 2.0 dated 2017-05-16 and 2.1 dated 2017-09-19
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NEWS | 12 ++++++++++++ R/distmap.R | 2 +- R/mix.heatmap.R | 9 +++++---- R/visualization.R | 8 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/CluMix.pdf |binary man/CluMix-package.Rd | 6 +++++- man/dendro.variables.Rd | 4 ++-- man/mix.heatmap.Rd | 7 ++++--- 12 files changed, 49 insertions(+), 31 deletions(-)
Title: R Interface for H2O Sparkling Water
Description: An extension package for 'sparklyr' that provides an R interface to
H2O Sparkling Water machine learning library (see <https://github.com/h2oai/sparkling-water> for more information).
Author: JJ Allaire [aut],
Erin LeDell [aut],
Michal Malohlava [aut],
Navdeep Gill [aut, cre],
Jakub Hava [aut],
RStudio [cph],
H2O.ai [cph]
Maintainer: Navdeep Gill <navdeep@h2o.ai>
Diff between rsparkling versions 0.2.1 dated 2017-06-30 and 0.2.2 dated 2017-09-19
DESCRIPTION | 6 +-- MD5 | 30 +++++++++++++---- NEWS.md | 17 +++++++++ R/install_h2o.R | 42 ++++++++++++++++-------- R/package.R | 39 ++++++++++++++++------ inst/examples/screenshots |only inst/examples/using-sparkling-water-in-YARN.Rmd |only inst/examples/using-sparkling-water-in-YARN.md |only tests/testthat.R | 5 +- tests/testthat/h2ologs |only tests/testthat/log4j.spark.log |only tests/testthat/test_transforms.R | 8 ++-- 12 files changed, 108 insertions(+), 39 deletions(-)
Title: Global Summary Daily Weather Data in R
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day (GSOD) weather data from
the from the USA National Centers for Environmental Information (NCEI) for
use in R. Units are converted from from United States Customary System
(USCS) units to International System of Units (SI). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure (es), actual
vapour pressure (ea) and relative humidity are calculated from the original
data and included in the final data set. The resulting data include station
identification information, state, country, latitude, longitude, elevation,
weather observations and associated flags. Data may be automatically saved
to disk. File output may be returned as a comma-separated values (CSV) or
GeoPackage (GPKG) file. Additional data are included with this R package: a
list of elevation values for stations between -60 and 60 degrees latitude
derived from the Shuttle Radar Topography Measuring Mission (SRTM). For
information on the GSOD data from NCEI, please see the GSOD readme.txt file
available from, <http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre] (http://orcid.org/0000-0002-0061-8359),
Tomislav Hengl [aut] (http://orcid.org/0000-0002-9921-5129),
Andrew Nelson [aut] (http://orcid.org/0000-0002-7249-3778)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 1.0.5 dated 2017-08-18 and 1.0.6 dated 2017-09-19
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/process_gz.R | 3 +-- inst/doc/GSODR.html | 2 +- inst/extdata/isd_history.rda |binary tests/testthat/test-process_gz.R | 2 +- tests/testthat/test-reformat_GSOD.R | 2 +- 8 files changed, 20 insertions(+), 15 deletions(-)
Title: R Client for the 'Civis data science API'
Description: A set of tools around common workflows and a convenient interface to make
requests directly to the 'Civis data science API' <https://www.civisanalytics.com/platform/>.
Author: Patrick Miller [cre, aut],
Keith Ingersoll [aut],
Bill Lattner [ctb],
Anh Le [ctb],
Michelangelo D'Agostino [ctb],
Sam Weiss [ctb],
Danning Chen [ctb]
Maintainer: Patrick Miller <pmiller@civisanalytics.com>
Diff between civis versions 1.0.0 dated 2017-09-16 and 1.0.1 dated 2017-09-19
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- configure | 4 ++-- configure.win | 4 +--- 4 files changed, 12 insertions(+), 14 deletions(-)
Title: Unicode Data and Utilities
Description: Data from Unicode 10.0.0 and related utilities.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Unicode versions 9.0.0-1 dated 2017-01-15 and 10.0.0-1 dated 2017-09-19
DESCRIPTION | 8 ++++---- MD5 | 6 ++++-- R/sysdata.rda |binary inst |only po |only 5 files changed, 8 insertions(+), 6 deletions(-)
Title: R Interface to Global Biotic Interactions
Description: A programmatic interface to the web service methods
provided by Global Biotic Interactions (GloBI). GloBI provides
access to spatial-temporal species interaction records from
sources all over the world. rglobi provides methods to search
species interactions by location, interaction type, and
taxonomic name. In addition, it supports Cypher, a graph query
language, to allow for executing custom queries on the GloBI
aggregate species interaction data set.
Author: Jorrit Poelen [aut, cre],
Stephen Gosnell [aut],
Sergey Slyusarev [aut]
Maintainer: Jorrit Poelen <jhpoelen@xs4all.nl>
Diff between rglobi versions 0.2.9 dated 2016-03-08 and 0.2.10 dated 2017-09-19
DESCRIPTION | 11 +++++---- MD5 | 45 ++++++++++++++++++++-------------------- NAMESPACE | 3 +- NEWS | 9 ++++++++ R/rglobi.R | 17 ++++++++++++++- README.md | 24 +++++++++++---------- build/vignette.rds |binary inst/doc/rglobi_vignette.Rmd | 6 +++++ inst/doc/rglobi_vignette.html | 7 ++++++ man/get_child_taxa.Rd | 16 +++++++------- man/get_data_fields.Rd | 3 -- man/get_interaction_areas.Rd | 3 -- man/get_interaction_matrix.Rd | 18 ++++++++-------- man/get_interaction_table.Rd | 16 +++++++------- man/get_interaction_types.Rd | 16 +++++++------- man/get_interactions.Rd | 16 +++++++------- man/get_interactions_by_taxa.Rd | 16 +++++++------- man/get_interactions_by_type.Rd |only man/get_interactions_in_area.Rd | 3 -- man/get_predators_of.Rd | 16 +++++++------- man/get_prey_of.Rd | 16 +++++++------- man/query.Rd | 3 -- tests/testthat/test-globi.R | 13 ++++++++--- vignettes/rglobi_vignette.Rmd | 6 +++++ 24 files changed, 166 insertions(+), 117 deletions(-)
Title: Document the R Working Environment
Description: Prints out information about the R working environment
(system, R version,loaded and attached packages and versions) from a single
function "env_doc()". Optionally adds information on git repository,
tags, commits and remotes (if available).
Author: Donald Jackson [aut, cre]
Maintainer: Donald Jackson <donald.jackson@bms.com>
Diff between envDocument versions 2.3.0 dated 2017-03-12 and 2.4.0 dated 2017-09-19
DESCRIPTION | 23 +++---- MD5 | 81 ++++++++++++++----------- NAMESPACE | 1 NEWS.md | 18 ++++- R/collapseInfo.R | 28 ++++---- R/envDocument.R | 50 +++++++-------- R/env_doc.R | 25 ++++++- R/fileStatus.R | 43 +++++++------ R/getDominoInfo.R |only R/getGitInfo.R | 56 ++++++++++------- R/getPackageInfo.R | 82 +++++++++++++------------- R/getRepo.R | 116 +++++++++++++++++-------------------- R/getScriptInfo.R | 62 ++++++++++--------- R/getScriptPath.R | 109 +++++++++++++++++----------------- R/getSysInfo.R | 42 ++++++------- R/getTag.R | 60 +++++++++---------- R/get_Rversion.R | 24 +++---- R/infoNotFound.R |only R/prettyPrintInfo.R | 46 +++++++------- R/remoteInfo.R | 24 +++---- README.md | 44 +++++++------- build/vignette.rds |binary inst/doc/envDocument-vignette.R | 12 ++- inst/doc/envDocument-vignette.Rmd | 17 +++-- inst/doc/envDocument-vignette.html | 20 ++++-- man/collapseInfo.Rd | 1 man/envDocument-package.Rd | 10 +++ man/env_doc.Rd | 20 ++++-- man/getDominoInfo.Rd |only man/getGitInfo.Rd | 5 - man/getPackageInfo.Rd | 1 man/getRepo.Rd | 1 man/getScriptInfo.Rd | 7 -- man/getScriptPath.Rd | 7 +- man/getSysInfo.Rd | 1 man/get_Rversion.Rd | 1 man/infoNotFound.Rd |only man/prettyPrintInfo.Rd | 1 man/remoteInfo.Rd | 1 tests/test_envDocument.R | 46 +++++++------- tests/test_envDocument.Rmd | 64 ++++++++++---------- tests/testthat |only tests/testthat.R |only vignettes/envDocument-vignette.Rmd | 17 +++-- 44 files changed, 615 insertions(+), 551 deletions(-)
Title: COmbat CO-Normalization Using conTrols (COCONUT)
Description: Allows for pooled analysis of microarray data by batch-correcting control samples, and then applying the derived correction parameters to non-control samples to obtain bias-free, inter-dataset corrected data.
Author: Timothy E Sweeney, MD, PhD [aut,cre]
Maintainer: Timothy E Sweeney <tes17@alumni.stanford.edu>
Diff between COCONUT versions 1.0.1 dated 2016-06-29 and 1.0.2 dated 2017-09-19
DESCRIPTION | 9 MD5 | 6 R/COCONUT.R | 995 +++++++++++++++++++++++++++--------------------------- build/partial.rdb |binary 4 files changed, 506 insertions(+), 504 deletions(-)
Title: Bayesian Nonparametric Model for Clustering with Mixed Scale
Variables
Description: Bayesian nonparametric approach for clustering that is capable to combine different types of variables (continuous, ordinal and nominal) and also accommodates for different sampling probabilities in a complex survey design. The model is based on a location mixture model with a Poisson-Dirichlet process prior on the location parameters of the associated latent variables. The package performs the clustering model described in Carmona, C., Nieto-Barajas, L. E., Canale, A. (2016) <arXiv:1612.00083>.
Author: Christian Carmona [aut, cre],
Luis Nieto-Barajas [aut],
Antonio Canale [ctb]
Maintainer: Christian Carmona <carmona@stats.ox.ac.uk>
Diff between BNPMIXcluster versions 1.1.0 dated 2017-08-31 and 1.2.2 dated 2017-09-19
BNPMIXcluster-1.1.0/BNPMIXcluster/R/sim.cluster.data.R |only BNPMIXcluster-1.1.0/BNPMIXcluster/data/sim.cluster.data.rda |only BNPMIXcluster-1.1.0/BNPMIXcluster/man/sim.cluster.data.Rd |only BNPMIXcluster-1.2.2/BNPMIXcluster/DESCRIPTION | 11 BNPMIXcluster-1.2.2/BNPMIXcluster/MD5 | 56 BNPMIXcluster-1.2.2/BNPMIXcluster/NAMESPACE | 2 BNPMIXcluster-1.2.2/BNPMIXcluster/R/MIXclustering.R | 1027 ++++++------ BNPMIXcluster-1.2.2/BNPMIXcluster/R/RcppExports.R | 12 BNPMIXcluster-1.2.2/BNPMIXcluster/R/Y_ex_5_1.R |only BNPMIXcluster-1.2.2/BNPMIXcluster/R/Z_latent_ex_5_1.R |only BNPMIXcluster-1.2.2/BNPMIXcluster/R/det_omega_mod.R |only BNPMIXcluster-1.2.2/BNPMIXcluster/R/get_latents.R | 405 ++-- BNPMIXcluster-1.2.2/BNPMIXcluster/R/log_f_post_Lambda_jj.R | 9 BNPMIXcluster-1.2.2/BNPMIXcluster/R/log_f_post_Omega.R | 15 BNPMIXcluster-1.2.2/BNPMIXcluster/R/log_f_post_a.R | 55 BNPMIXcluster-1.2.2/BNPMIXcluster/R/log_f_post_b.R | 34 BNPMIXcluster-1.2.2/BNPMIXcluster/R/meta_param_ex.R |only BNPMIXcluster-1.2.2/BNPMIXcluster/R/sampling_Lambda_jj.R | 3 BNPMIXcluster-1.2.2/BNPMIXcluster/R/sampling_a.R | 77 BNPMIXcluster-1.2.2/BNPMIXcluster/R/sampling_b.R | 22 BNPMIXcluster-1.2.2/BNPMIXcluster/data/Y_ex_5_1.rda |only BNPMIXcluster-1.2.2/BNPMIXcluster/data/Z_latent_ex_5_1.rda |only BNPMIXcluster-1.2.2/BNPMIXcluster/data/meta_param_ex.rda |only BNPMIXcluster-1.2.2/BNPMIXcluster/inst |only BNPMIXcluster-1.2.2/BNPMIXcluster/man/MIXclustering.Rd | 257 +-- BNPMIXcluster-1.2.2/BNPMIXcluster/man/Y_ex_5_1.Rd |only BNPMIXcluster-1.2.2/BNPMIXcluster/man/Z_latent_ex_5_1.Rd |only BNPMIXcluster-1.2.2/BNPMIXcluster/man/get_latents.Rd | 12 BNPMIXcluster-1.2.2/BNPMIXcluster/man/meta_param_ex.Rd |only BNPMIXcluster-1.2.2/BNPMIXcluster/man/sampling_a.Rd | 2 BNPMIXcluster-1.2.2/BNPMIXcluster/src/RcppExports.cpp | 92 - BNPMIXcluster-1.2.2/BNPMIXcluster/src/dmvnrm_arma.cpp | 8 BNPMIXcluster-1.2.2/BNPMIXcluster/src/get_latents.cpp | 284 --- BNPMIXcluster-1.2.2/BNPMIXcluster/src/log_f_post_a.cpp | 7 BNPMIXcluster-1.2.2/BNPMIXcluster/src/log_f_post_b.cpp | 12 BNPMIXcluster-1.2.2/BNPMIXcluster/src/rtn1.cpp |only 36 files changed, 1116 insertions(+), 1286 deletions(-)
Title: MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis
Description: Provides methods for quality control and robust pre-processing and analysis of MALDI mass spectrometry data.
Author: Javier Palarea-Albaladejo
Maintainer: Javier Palarea-Albaladejo <javier.palarea@bioss.ac.uk>
Diff between MALDIrppa versions 1.0.0 dated 2017-07-29 and 1.0.1 dated 2017-09-19
MALDIrppa-1.0.0/MALDIrppa/R/MSlist.R |only MALDIrppa-1.0.0/MALDIrppa/R/MSlist2.R |only MALDIrppa-1.0.0/MALDIrppa/man/MSlist.Rd |only MALDIrppa-1.0.0/MALDIrppa/man/MSlist2.Rd |only MALDIrppa-1.0.1/MALDIrppa/DESCRIPTION | 8 MALDIrppa-1.0.1/MALDIrppa/MD5 | 89 ++-- MALDIrppa-1.0.1/MALDIrppa/NAMESPACE | 2 MALDIrppa-1.0.1/MALDIrppa/NEWS |only MALDIrppa-1.0.1/MALDIrppa/R/adapt.out.R |only MALDIrppa-1.0.1/MALDIrppa/R/addMetadata.R | 7 MALDIrppa-1.0.1/MALDIrppa/R/alignPeaks.R | 16 MALDIrppa-1.0.1/MALDIrppa/R/arw.R |only MALDIrppa-1.0.1/MALDIrppa/R/countPeaks.R | 13 MALDIrppa-1.0.1/MALDIrppa/R/deletePeaks.R | 22 - MALDIrppa-1.0.1/MALDIrppa/R/detectOutliers.R | 91 +--- MALDIrppa-1.0.1/MALDIrppa/R/exportFasta.R |only MALDIrppa-1.0.1/MALDIrppa/R/exportNexus.R |only MALDIrppa-1.0.1/MALDIrppa/R/importSpectra.R | 23 - MALDIrppa-1.0.1/MALDIrppa/R/peakPatterns.R | 64 +-- MALDIrppa-1.0.1/MALDIrppa/R/plot.patterns.R |only MALDIrppa-1.0.1/MALDIrppa/R/plot.scSpectra.R | 14 MALDIrppa-1.0.1/MALDIrppa/R/rawToPeaks.R |only MALDIrppa-1.0.1/MALDIrppa/R/rawToSpectra.R |only MALDIrppa-1.0.1/MALDIrppa/R/redResolution.R | 26 - MALDIrppa-1.0.1/MALDIrppa/R/sc.filter.R |only MALDIrppa-1.0.1/MALDIrppa/R/screenSpectra.R | 115 ++---- MALDIrppa-1.0.1/MALDIrppa/R/snrPeaks.R | 5 MALDIrppa-1.0.1/MALDIrppa/R/summary.scSpectra.R | 25 - MALDIrppa-1.0.1/MALDIrppa/R/summaryPeaks.R | 35 - MALDIrppa-1.0.1/MALDIrppa/R/summarySpectra.R | 20 - MALDIrppa-1.0.1/MALDIrppa/R/summaryStats.R |only MALDIrppa-1.0.1/MALDIrppa/R/transfIntensity.R | 26 - MALDIrppa-1.0.1/MALDIrppa/R/wavSmoothing.R | 10 MALDIrppa-1.0.1/MALDIrppa/R/writeIntensity.R | 240 ------------- MALDIrppa-1.0.1/MALDIrppa/R/writeMetadata.R | 7 MALDIrppa-1.0.1/MALDIrppa/build/vignette.rds |binary MALDIrppa-1.0.1/MALDIrppa/inst/doc/MALDIrppa_vignette.R | 2 MALDIrppa-1.0.1/MALDIrppa/inst/doc/MALDIrppa_vignette.Rmd | 6 MALDIrppa-1.0.1/MALDIrppa/inst/doc/MALDIrppa_vignette.html | 56 +-- MALDIrppa-1.0.1/MALDIrppa/man/MALDIrppa-package.Rd | 4 MALDIrppa-1.0.1/MALDIrppa/man/alignPeaks.Rd | 2 MALDIrppa-1.0.1/MALDIrppa/man/countPeaks.Rd | 2 MALDIrppa-1.0.1/MALDIrppa/man/importSpectra.Rd | 2 MALDIrppa-1.0.1/MALDIrppa/man/peakPatterns.Rd | 12 MALDIrppa-1.0.1/MALDIrppa/man/rawToPeaks.Rd |only MALDIrppa-1.0.1/MALDIrppa/man/rawToSpectra.Rd |only MALDIrppa-1.0.1/MALDIrppa/man/screenSpectra.Rd | 3 MALDIrppa-1.0.1/MALDIrppa/man/summaryPeaks.Rd | 2 MALDIrppa-1.0.1/MALDIrppa/man/transfIntensity.Rd | 11 MALDIrppa-1.0.1/MALDIrppa/man/writeIntensity.Rd | 2 MALDIrppa-1.0.1/MALDIrppa/tests |only MALDIrppa-1.0.1/MALDIrppa/vignettes/MALDIrppa_vignette.Rmd | 6 52 files changed, 341 insertions(+), 627 deletions(-)
Title: Lightweight Biology Software Installer
Description: Can be used to install and download massive bioinformatics analysis softwares and databases, such as NGS reads mapping tools with its required databases.
Author: Jianfeng Li [aut, cre]
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>
Diff between BioInstaller versions 0.2.0 dated 2017-07-25 and 0.2.1 dated 2017-09-19
BioInstaller-0.2.0/BioInstaller/inst/extdata/nongithub_databases.toml |only BioInstaller-0.2.0/BioInstaller/inst/extdata/nongithub_databases_blast.toml |only BioInstaller-0.2.0/BioInstaller/inst/extdata/nongithub_databases_meta.toml |only BioInstaller-0.2.1/BioInstaller/ChangeLog | 8 BioInstaller-0.2.1/BioInstaller/DESCRIPTION | 9 BioInstaller-0.2.1/BioInstaller/MD5 | 35 - BioInstaller-0.2.1/BioInstaller/README.md | 16 BioInstaller-0.2.1/BioInstaller/inst/doc/BioInstaller.R | 9 BioInstaller-0.2.1/BioInstaller/inst/doc/BioInstaller.Rmd | 12 BioInstaller-0.2.1/BioInstaller/inst/doc/BioInstaller.html | 308 +++++----- BioInstaller-0.2.1/BioInstaller/inst/doc/write_configuration_file.R | 2 BioInstaller-0.2.1/BioInstaller/inst/doc/write_configuration_file.Rmd | 4 BioInstaller-0.2.1/BioInstaller/inst/doc/write_configuration_file.html | 4 BioInstaller-0.2.1/BioInstaller/inst/extdata/databases |only BioInstaller-0.2.1/BioInstaller/inst/extdata/github.toml | 14 BioInstaller-0.2.1/BioInstaller/inst/extdata/nongithub.toml | 14 BioInstaller-0.2.1/BioInstaller/tests/testthat/test_utils.R | 2 BioInstaller-0.2.1/BioInstaller/vignettes/BioInstaller.Rmd | 12 BioInstaller-0.2.1/BioInstaller/vignettes/write_configuration_file.Rmd | 4 19 files changed, 267 insertions(+), 186 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-16 1.31
2013-09-27 1.30.1
2011-10-17 1.29
2011-09-12 1.28
2011-04-13 1.27
2011-04-05 1.26
2011-03-18 1.2
2010-11-23 1.1
2010-11-18 1.0
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods.
Author: Gregor Kastner [aut, cre]
Maintainer: Gregor Kastner <gregor.kastner@wu.ac.at>
Diff between stochvol versions 1.3.2 dated 2016-10-26 and 1.3.3 dated 2017-09-19
DESCRIPTION | 6 ++-- MD5 | 24 ++++++++-------- NAMESPACE | 2 - NEWS | 5 +++ build/vignette.rds |binary data/exrates.RData |binary inst/doc/article.R | 68 +++++++++++++++++++++++++----------------------- inst/doc/article.Rnw | 32 ++++++++++++---------- inst/doc/article.pdf |binary inst/doc/heavytails.pdf |binary man/svsample.Rd | 2 - src/sampler.cpp | 9 +++++- vignettes/article.Rnw | 32 ++++++++++++---------- 13 files changed, 102 insertions(+), 78 deletions(-)
Title: Regression Models with Break-Points / Change-Points Estimation
Description: Given a regression model, segmented `updates' the model by adding one or more segmented (i.e., piece-wise linear) relationships. Several variables with multiple breakpoints are allowed.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between segmented versions 0.5-2.1 dated 2017-06-14 and 0.5-2.2 dated 2017-09-19
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 11 ++++++++++- R/plot.segmented.R | 1 + R/seg.lm.fit.r | 4 ++-- R/segmented.glm.R | 2 +- R/segmented.lm.R | 9 ++++++++- R/vcov.segmented.R | 2 +- man/segmented-package.Rd | 6 ++++-- man/slope.Rd | 9 ++++++--- 10 files changed, 46 insertions(+), 24 deletions(-)
Title: An Individual-Based Population Genetic Simulation Environment
Description: An interface between R and the metasim simulation engine.
The simulation environment is documented in: "Strand, A.(2002) <DOI:10.1046/j.1471-8286.2002.00208.x> Metasim 1.0: an individual-based environment for simulating population genetics of
complex population dynamics. Mol. Ecol. Notes.
Please see the vignettes CreatingLandscapes and Simulating to get some ideas on how to use the packages.
See the rmetasim vignette to get an overview and to see important changes to the
code in the most recent version.
Author: Allan Strand <stranda@cofc.edu>,
James Niehaus
Maintainer: Allan Strand <stranda@cofc.edu>
Diff between rmetasim versions 3.1.2 dated 2017-09-16 and 3.1.3 dated 2017-09-19
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- inst/doc/ApplyCarryToStage.html | 4 ++-- inst/doc/CreatingLandscapes.html | 10 +++++----- inst/doc/Simulating.html | 12 ++++++------ src/Landscape.h | 2 +- src/Makevars | 8 ++------ src/TransMat.cc | 8 ++++---- src/metasim.h | 2 ++ src/rmetasim.cc | 23 ++++++++++++----------- src/rmetasim.h | 3 ++- 11 files changed, 49 insertions(+), 49 deletions(-)
Title: Interface to Geometry Engine - Open Source ('GEOS')
Description: Interface to Geometry Engine - Open Source ('GEOS') using the C 'API' for topology operations on geometries. The 'GEOS' library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on 'CRAN'.
Author: Roger Bivand [cre, aut],
Colin Rundel [aut],
Edzer Pebesma [ctb],
Rainer Stuetz [ctb],
Karl Ove Hufthammer [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgeos versions 0.3-23 dated 2017-04-06 and 0.3-24 dated 2017-09-19
ChangeLog | 12 ++++++++++++ DESCRIPTION | 14 +++++++------- MD5 | 13 +++++++------ configure | 18 +++++++++--------- inst/ChangeLog | 12 ++++++++++++ inst/SVN_VERSION | 2 +- src/Makevars.win | 29 +++++++++++++++++++++-------- tools |only 8 files changed, 69 insertions(+), 31 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to the Geospatial Data Abstraction Library ('GDAL') (>= 1.6.3) and access to projection/transformation operations from the 'PROJ.4' library. The 'GDAL' and 'PROJ.4' libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both 'GDAL' raster and 'OGR' vector map data can be imported into R, and 'GDAL' raster data and 'OGR' vector data exported. Use is made of classes defined in the 'sp' package. Windows and Mac Intel OS X binaries (including 'GDAL', 'PROJ.4' and 'Expat') are provided on 'CRAN'.
Author: Roger Bivand [cre, aut],
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.2-10 dated 2017-09-15 and 1.2-11 dated 2017-09-19
rgdal-1.2-10/rgdal/configure.win |only rgdal-1.2-11/rgdal/ChangeLog | 16 ++++++++++++++++ rgdal-1.2-11/rgdal/DESCRIPTION | 10 +++++----- rgdal-1.2-11/rgdal/MD5 | 13 ++++++------- rgdal-1.2-11/rgdal/configure | 18 +++++++++--------- rgdal-1.2-11/rgdal/inst/ChangeLog | 16 ++++++++++++++++ rgdal-1.2-11/rgdal/inst/SVN_VERSION | 2 +- rgdal-1.2-11/rgdal/inst/doc/OGR_shape_encoding.pdf |binary 8 files changed, 53 insertions(+), 22 deletions(-)
Title: Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation
Description: Generalized additive (mixed) models, some of their extensions and
other generalized ridge regression with multiple smoothing
parameter estimation by (Restricted) Marginal Likelihood,
Generalized Cross Validation and similar. Includes a gam()
function, a wide variety of smoothers, JAGS support and
distributions beyond the exponential family.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>
Diff between mgcv versions 1.8-21 dated 2017-09-17 and 1.8-22 dated 2017-09-19
ChangeLog | 5 +++++ DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/bam.r | 4 ++-- man/bam.Rd | 4 ++-- 5 files changed, 16 insertions(+), 11 deletions(-)
Title: Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick
Support
Description: Functions to make useful (and pretty) plots for scientific plotting. Additional plotting features are added for base plotting, with particular emphasis on making attractive log axis plots.
Author: Aaron Robotham
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between magicaxis versions 2.0.1 dated 2017-05-11 and 2.0.3 dated 2017-09-19
DESCRIPTION | 12 ++- MD5 | 49 ++++++++------ NAMESPACE | 6 - NEWS | 12 +++ R/magaxis.R | 37 +++++++---- R/magbar.R | 2 R/magclip.R | 6 - R/magcon.R | 4 - R/magcutout.R |only R/maghist.R | 35 +++++++--- R/magimage.R | 8 +- R/magimageRGB.R | 156 ++++++++++++++++++++++++++++++++++++++++++++--- R/magimageWCS.R |only R/magmap.R | 62 +++++++++--------- R/magplot.R | 2 R/magproj.R | 18 +++-- R/magwarp.R |only inst |only man/magaxis.Rd | 2 man/magcon.Rd | 2 man/magcutout.Rd |only man/maghist.Rd | 10 ++- man/magicaxis-package.Rd | 5 - man/magimage.Rd | 19 +++-- man/magimageWCS.Rd |only man/magmap.Rd | 6 - man/magproj.Rd | 2 man/magwarp.Rd |only 28 files changed, 329 insertions(+), 126 deletions(-)