Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through matching, weighting or subclassification, for example, using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal', and 'WeightIt' for assessing balance on the output of their preprocessing functions. Users can also specify data for balance assessment not generated through the above packages. Also included are methods for assessing balance in clustered or multiply imputed data sets.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah@unc.edu>
Diff between cobalt versions 2.2.0 dated 2017-09-05 and 3.0.0 dated 2017-10-15
cobalt-2.2.0/cobalt/DESCRIPTION |only cobalt-2.2.0/cobalt/MD5 |only cobalt-2.2.0/cobalt/NAMESPACE |only cobalt-2.2.0/cobalt/NEWS.md |only cobalt-2.2.0/cobalt/R |only cobalt-2.2.0/cobalt/README.md |only cobalt-2.2.0/cobalt/build |only cobalt-2.2.0/cobalt/data |only cobalt-2.2.0/cobalt/inst/doc/cobalt_basic_use.R |only cobalt-2.2.0/cobalt/inst/doc/cobalt_cluster_imp.R |only cobalt-2.2.0/cobalt/man |only cobalt-2.2.0/cobalt/vignettes |only cobalt-3.0.0/cobalt/inst/doc/cobalt_basic_use.Rmd | 90 ++++ cobalt-3.0.0/cobalt/inst/doc/cobalt_basic_use.html | 366 +++++++++++-------- cobalt-3.0.0/cobalt/inst/doc/cobalt_cluster_imp.Rmd | 2 cobalt-3.0.0/cobalt/inst/doc/cobalt_cluster_imp.html | 366 ------------------- 16 files changed, 328 insertions(+), 496 deletions(-)
Title: Design of Experiments Suite: Generate and Evaluate Optimal
Designs
Description: Generates and evaluates D, I, A, Alias, E, T, and G optimal designs. Supports generation and evaluation of split/split-split/.../N-split plot designs. Includes parametric and Monte Carlo power evaluation functions, and supports calculating power for censored responses. Provides a framework to evaluate power using functions provided in other packages or written by the user. Includes a Shiny graphical user interface that displays the underlying code used to create and evaluate the design to improve ease-of-use and make analyses more reproducible.
Author: Tyler Morgan-Wall [aut, cre],
George Khoury [aut]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between skpr versions 0.35.1 dated 2017-08-17 and 0.39.0 dated 2017-10-15
skpr-0.35.1/skpr/inst/COPYRIGHTS |only skpr-0.39.0/skpr/DESCRIPTION | 10 skpr-0.39.0/skpr/MD5 | 146 skpr-0.39.0/skpr/NAMESPACE | 52 skpr-0.39.0/skpr/NEWS |only skpr-0.39.0/skpr/R/aliasmodel.R | 78 skpr-0.39.0/skpr/R/anticoef_from_delta.R |only skpr-0.39.0/skpr/R/anticoef_from_delta_surv.R |only skpr-0.39.0/skpr/R/blockingstructure.R | 66 skpr-0.39.0/skpr/R/calcblocksizes.R | 38 skpr-0.39.0/skpr/R/calcnoncentralparam.R | 30 skpr-0.39.0/skpr/R/calculatepower.R | 26 skpr-0.39.0/skpr/R/constructRunMatrix.R | 34 skpr-0.39.0/skpr/R/contr.simplex.R | 62 skpr-0.39.0/skpr/R/disallowed_combinations.R | 42 skpr-0.39.0/skpr/R/effectpower.R | 63 skpr-0.39.0/skpr/R/eval_design.R | 930 ++-- skpr-0.39.0/skpr/R/eval_design_custom_mc.R | 409 - skpr-0.39.0/skpr/R/eval_design_mc.R | 1125 ++--- skpr-0.39.0/skpr/R/eval_design_survival_mc.R | 588 +- skpr-0.39.0/skpr/R/extractPvalues.R | 50 skpr-0.39.0/skpr/R/gen_anticoef.R | 94 skpr-0.39.0/skpr/R/gen_binomial_anticoef.R | 56 skpr-0.39.0/skpr/R/gen_design.R | 1731 ++++--- skpr-0.39.0/skpr/R/gen_exponential_anticoef.R |only skpr-0.39.0/skpr/R/gen_momentsmatrix.R | 160 skpr-0.39.0/skpr/R/gen_poisson_anticoef.R |only skpr-0.39.0/skpr/R/genhypmatrix.R | 52 skpr-0.39.0/skpr/R/genparammatrix.R | 48 skpr-0.39.0/skpr/R/parameterpower.R | 52 skpr-0.39.0/skpr/R/plot_correlations.R | 194 skpr-0.39.0/skpr/R/plot_fds.R | 212 skpr-0.39.0/skpr/R/priorlevels.R | 34 skpr-0.39.0/skpr/R/quad.R | 44 skpr-0.39.0/skpr/R/reduceRunMatrix.R | 50 skpr-0.39.0/skpr/R/skpRcpp.R | 6 skpr-0.39.0/skpr/R/skprGUI.R | 3975 +++++++++--------- skpr-0.39.0/skpr/R/skprGUIbrowser.R | 36 skpr-0.39.0/skpr/R/startupmessage.R | 20 skpr-0.39.0/skpr/README.md | 318 - skpr-0.39.0/skpr/inst/shiny/skprGUI/server.R | 2550 +++++------ skpr-0.39.0/skpr/inst/shiny/skprGUI/ui.R | 1406 +++--- skpr-0.39.0/skpr/man/aliasmodel.Rd | 36 skpr-0.39.0/skpr/man/anticoef_from_delta.Rd |only skpr-0.39.0/skpr/man/anticoef_from_delta_surv.Rd |only skpr-0.39.0/skpr/man/blockingstructure.Rd | 36 skpr-0.39.0/skpr/man/calcblocksizes.Rd | 40 skpr-0.39.0/skpr/man/calcnoncentralparam.Rd | 44 skpr-0.39.0/skpr/man/calculatepower.Rd | 48 skpr-0.39.0/skpr/man/constructRunMatrix.Rd | 38 skpr-0.39.0/skpr/man/contr.simplex.Rd | 44 skpr-0.39.0/skpr/man/disallowed_combinations.Rd | 36 skpr-0.39.0/skpr/man/effectpower.Rd | 52 skpr-0.39.0/skpr/man/eval_design.Rd | 316 - skpr-0.39.0/skpr/man/eval_design_custom_mc.Rd | 213 skpr-0.39.0/skpr/man/eval_design_mc.Rd | 429 + skpr-0.39.0/skpr/man/eval_design_survival_mc.Rd | 256 - skpr-0.39.0/skpr/man/extractPvalues.Rd | 42 skpr-0.39.0/skpr/man/figures/skprlogo.png |only skpr-0.39.0/skpr/man/gen_anticoef.Rd | 36 skpr-0.39.0/skpr/man/gen_binomial_anticoef.Rd | 62 skpr-0.39.0/skpr/man/gen_design.Rd | 401 - skpr-0.39.0/skpr/man/gen_exponential_anticoef.Rd |only skpr-0.39.0/skpr/man/gen_momentsmatrix.Rd | 38 skpr-0.39.0/skpr/man/gen_poisson_anticoef.Rd |only skpr-0.39.0/skpr/man/genhypmatrix.Rd | 44 skpr-0.39.0/skpr/man/genparammatrix.Rd | 46 skpr-0.39.0/skpr/man/parameterpower.Rd | 48 skpr-0.39.0/skpr/man/plot_correlations.Rd | 86 skpr-0.39.0/skpr/man/plot_fds.Rd | 68 skpr-0.39.0/skpr/man/priorlevels.Rd | 38 skpr-0.39.0/skpr/man/quad.Rd | 36 skpr-0.39.0/skpr/man/reduceRunMatrix.Rd | 40 skpr-0.39.0/skpr/man/skprGUI.Rd | 42 skpr-0.39.0/skpr/man/skprGUIbrowser.Rd | 32 skpr-0.39.0/skpr/src/genOptimalDesign.cpp | 13 skpr-0.39.0/skpr/tests/testthat.R | 6 skpr-0.39.0/skpr/tests/testthat/testDeltaProcessing.R |only skpr-0.39.0/skpr/tests/testthat/testExampleCode.R | 633 +- skpr-0.39.0/skpr/tests/testthat/testExtractPvalues.R | 64 80 files changed, 9328 insertions(+), 8822 deletions(-)
Title: 'ViennaCL' C++ Header Files
Description: 'ViennaCL' is a free open-source linear algebra library
for computations on many-core architectures (GPUs, MIC) and
multi-core CPUs. The library is written in C++ and supports 'CUDA',
'OpenCL', and 'OpenMP' (including switches at runtime).
I have placed these libraries in this package as a more efficient
distribution system for CRAN. The idea is that you can write a package
that depends on the 'ViennaCL' library and yet you do not need to
distribute a copy of this code with your package.
Author: Charles Determan Jr.
Maintainer: Charles Determan Jr <cdetermanjr@gmail.com>
Diff between RViennaCL versions 1.7.1.4 dated 2016-11-24 and 1.7.1.7 dated 2017-10-15
DESCRIPTION | 11 MD5 | 500 +++--- build/partial.rdb |binary inst/NEWS.Rd | 8 inst/include/viennacl/backend/cpu_ram.hpp | 2 inst/include/viennacl/backend/cuda.hpp | 2 inst/include/viennacl/backend/mem_handle.hpp | 2 inst/include/viennacl/backend/memory.hpp | 6 inst/include/viennacl/backend/opencl.hpp | 2 inst/include/viennacl/backend/util.hpp | 2 inst/include/viennacl/circulant_matrix.hpp | 2 inst/include/viennacl/compressed_compressed_matrix.hpp | 2 inst/include/viennacl/compressed_matrix.hpp | 104 + inst/include/viennacl/context.hpp | 2 inst/include/viennacl/coordinate_matrix.hpp | 2 inst/include/viennacl/detail/matrix_def.hpp | 2 inst/include/viennacl/device_specific/builtin_database/common.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/accelerator/fallback.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/cpu/fallback.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/amd/ev/cedar.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/amd/ev/cypress.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/amd/ni/barts.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/amd/ni/devastator.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/amd/ni/scrapper.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/amd/si/tahiti.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/amd/vi/hawaii.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/fallback.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/nv/f/ge_gt_540m.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/nv/f/ge_gtx_470.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/nv/f/ge_gtx_580.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/nv/f/tesla_c2050.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/nv/k/tesla_k20m.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/nv/m/ge_gtx_750_ti.hpp | 2 inst/include/viennacl/device_specific/builtin_database/devices/gpu/nv/tesla/ge_gtx_260.hpp | 2 inst/include/viennacl/device_specific/builtin_database/matrix_product.hpp | 2 inst/include/viennacl/device_specific/execute.hpp | 2 inst/include/viennacl/device_specific/execution_handler.hpp | 2 inst/include/viennacl/device_specific/forwards.h | 6 inst/include/viennacl/device_specific/lazy_program_compiler.hpp | 2 inst/include/viennacl/device_specific/mapped_objects.hpp | 2 inst/include/viennacl/device_specific/templates/matrix_product_template.hpp | 2 inst/include/viennacl/device_specific/templates/template_base.hpp | 2 inst/include/viennacl/device_specific/templates/utils.hpp | 2 inst/include/viennacl/device_specific/tree_parsing.hpp | 14 inst/include/viennacl/device_specific/utils.hpp | 13 inst/include/viennacl/ell_matrix.hpp | 2 inst/include/viennacl/fft.hpp | 2 inst/include/viennacl/forwards.h | 26 inst/include/viennacl/hankel_matrix.hpp | 2 inst/include/viennacl/hyb_matrix.hpp | 2 inst/include/viennacl/io/matrix_market.hpp | 2 inst/include/viennacl/linalg/amg.hpp | 2 inst/include/viennacl/linalg/amg_operations.hpp | 2 inst/include/viennacl/linalg/bicgstab.hpp | 2 inst/include/viennacl/linalg/bisect.hpp | 2 inst/include/viennacl/linalg/bisect_gpu.hpp | 2 inst/include/viennacl/linalg/cg.hpp | 4 inst/include/viennacl/linalg/circulant_matrix_operations.hpp | 2 inst/include/viennacl/linalg/cuda/amg_operations.hpp | 2 inst/include/viennacl/linalg/cuda/bisect_kernel_calls.hpp | 2 inst/include/viennacl/linalg/cuda/bisect_kernel_large.hpp | 2 inst/include/viennacl/linalg/cuda/bisect_kernel_large_multi.hpp | 2 inst/include/viennacl/linalg/cuda/bisect_kernel_large_onei.hpp | 2 inst/include/viennacl/linalg/cuda/bisect_kernel_small.hpp | 2 inst/include/viennacl/linalg/cuda/bisect_util.hpp | 2 inst/include/viennacl/linalg/cuda/common.hpp | 53 inst/include/viennacl/linalg/cuda/direct_solve.hpp | 2 inst/include/viennacl/linalg/cuda/fft_operations.hpp | 2 inst/include/viennacl/linalg/cuda/ilu_operations.hpp | 2 inst/include/viennacl/linalg/cuda/iterative_operations.hpp | 2 inst/include/viennacl/linalg/cuda/matrix_operations.hpp | 801 ++-------- inst/include/viennacl/linalg/cuda/matrix_operations_col.hpp | 453 +---- inst/include/viennacl/linalg/cuda/matrix_operations_prod.hpp | 2 inst/include/viennacl/linalg/cuda/matrix_operations_row.hpp | 428 ----- inst/include/viennacl/linalg/cuda/misc_operations.hpp | 2 inst/include/viennacl/linalg/cuda/nmf_operations.hpp | 2 inst/include/viennacl/linalg/cuda/scalar_operations.hpp | 2 inst/include/viennacl/linalg/cuda/sparse_matrix_operations.hpp | 2 inst/include/viennacl/linalg/cuda/sparse_matrix_operations_solve.hpp | 2 inst/include/viennacl/linalg/cuda/spgemm.hpp | 2 inst/include/viennacl/linalg/cuda/spgemm_rmerge.hpp | 6 inst/include/viennacl/linalg/cuda/vector_operations.hpp | 610 ++----- inst/include/viennacl/linalg/detail/amg/amg_base.hpp | 2 inst/include/viennacl/linalg/detail/bisect/bisect_kernel_calls.hpp | 2 inst/include/viennacl/linalg/detail/bisect/bisect_large.hpp | 2 inst/include/viennacl/linalg/detail/bisect/bisect_small.hpp | 2 inst/include/viennacl/linalg/detail/bisect/gerschgorin.hpp | 2 inst/include/viennacl/linalg/detail/bisect/structs.hpp | 2 inst/include/viennacl/linalg/detail/bisect/util.hpp | 2 inst/include/viennacl/linalg/detail/ilu/block_ilu.hpp | 2 inst/include/viennacl/linalg/detail/ilu/chow_patel_ilu.hpp | 2 inst/include/viennacl/linalg/detail/ilu/common.hpp | 2 inst/include/viennacl/linalg/detail/ilu/ilu0.hpp | 2 inst/include/viennacl/linalg/detail/ilu/ilut.hpp | 117 + inst/include/viennacl/linalg/detail/op_applier.hpp | 35 inst/include/viennacl/linalg/detail/op_executor.hpp | 2 inst/include/viennacl/linalg/detail/spai/block_matrix.hpp | 2 inst/include/viennacl/linalg/detail/spai/block_vector.hpp | 2 inst/include/viennacl/linalg/detail/spai/fspai.hpp | 2 inst/include/viennacl/linalg/detail/spai/qr.hpp | 2 inst/include/viennacl/linalg/detail/spai/small_matrix.hpp | 2 inst/include/viennacl/linalg/detail/spai/spai-dynamic.hpp | 2 inst/include/viennacl/linalg/detail/spai/spai-static.hpp | 2 inst/include/viennacl/linalg/detail/spai/spai.hpp | 2 inst/include/viennacl/linalg/detail/spai/spai_tag.hpp | 2 inst/include/viennacl/linalg/detail/spai/sparse_vector.hpp | 2 inst/include/viennacl/linalg/direct_solve.hpp | 2 inst/include/viennacl/linalg/fft_operations.hpp | 2 inst/include/viennacl/linalg/gmres.hpp | 2 inst/include/viennacl/linalg/hankel_matrix_operations.hpp | 2 inst/include/viennacl/linalg/host_based/amg_operations.hpp | 8 inst/include/viennacl/linalg/host_based/common.hpp | 2 inst/include/viennacl/linalg/host_based/direct_solve.hpp | 2 inst/include/viennacl/linalg/host_based/fft_operations.hpp | 2 inst/include/viennacl/linalg/host_based/ilu_operations.hpp | 2 inst/include/viennacl/linalg/host_based/iterative_operations.hpp | 2 inst/include/viennacl/linalg/host_based/matrix_operations.hpp | 133 + inst/include/viennacl/linalg/host_based/misc_operations.hpp | 2 inst/include/viennacl/linalg/host_based/nmf_operations.hpp | 2 inst/include/viennacl/linalg/host_based/scalar_operations.hpp | 2 inst/include/viennacl/linalg/host_based/sparse_matrix_operations.hpp | 2 inst/include/viennacl/linalg/host_based/spgemm_vector.hpp | 2 inst/include/viennacl/linalg/host_based/vector_operations.hpp | 66 inst/include/viennacl/linalg/ichol.hpp | 2 inst/include/viennacl/linalg/ilu_operations.hpp | 2 inst/include/viennacl/linalg/inner_prod.hpp | 2 inst/include/viennacl/linalg/iterative_operations.hpp | 2 inst/include/viennacl/linalg/jacobi_precond.hpp | 2 inst/include/viennacl/linalg/lanczos.hpp | 2 inst/include/viennacl/linalg/lu.hpp | 2 inst/include/viennacl/linalg/matrix_operations.hpp | 123 + inst/include/viennacl/linalg/maxmin.hpp | 2 inst/include/viennacl/linalg/misc_operations.hpp | 2 inst/include/viennacl/linalg/mixed_precision_cg.hpp | 2 inst/include/viennacl/linalg/nmf.hpp | 2 inst/include/viennacl/linalg/norm_1.hpp | 2 inst/include/viennacl/linalg/norm_2.hpp | 2 inst/include/viennacl/linalg/norm_frobenius.hpp | 2 inst/include/viennacl/linalg/norm_inf.hpp | 2 inst/include/viennacl/linalg/opencl/amg_operations.hpp | 2 inst/include/viennacl/linalg/opencl/bisect_kernel_calls.hpp | 2 inst/include/viennacl/linalg/opencl/common.hpp | 14 inst/include/viennacl/linalg/opencl/direct_solve.hpp | 2 inst/include/viennacl/linalg/opencl/fft_operations.hpp | 2 inst/include/viennacl/linalg/opencl/ilu_operations.hpp | 2 inst/include/viennacl/linalg/opencl/iterative_operations.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/amg.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/bisect.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/compressed_compressed_matrix.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/compressed_matrix.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/coordinate_matrix.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/ell_matrix.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/fft.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/hyb_matrix.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/ilu.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/iterative.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/matrix.hpp | 164 ++ inst/include/viennacl/linalg/opencl/kernels/matrix_element.hpp | 14 inst/include/viennacl/linalg/opencl/kernels/matrix_solve.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/nmf.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/scalar.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/scan.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/sliced_ell_matrix.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/spai.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/svd.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/vector.hpp | 2 inst/include/viennacl/linalg/opencl/kernels/vector_element.hpp | 64 inst/include/viennacl/linalg/opencl/matrix_operations.hpp | 96 + inst/include/viennacl/linalg/opencl/misc_operations.hpp | 2 inst/include/viennacl/linalg/opencl/nmf_operations.hpp | 2 inst/include/viennacl/linalg/opencl/scalar_operations.hpp | 2 inst/include/viennacl/linalg/opencl/sparse_matrix_operations.hpp | 2 inst/include/viennacl/linalg/opencl/vandermonde_matrix_operations.hpp | 2 inst/include/viennacl/linalg/opencl/vector_operations.hpp | 91 + inst/include/viennacl/linalg/power_iter.hpp | 2 inst/include/viennacl/linalg/prod.hpp | 2 inst/include/viennacl/linalg/qr-method-common.hpp | 2 inst/include/viennacl/linalg/qr-method.hpp | 2 inst/include/viennacl/linalg/qr.hpp | 2 inst/include/viennacl/linalg/row_scaling.hpp | 2 inst/include/viennacl/linalg/scalar_operations.hpp | 2 inst/include/viennacl/linalg/spai.hpp | 2 inst/include/viennacl/linalg/sparse_matrix_operations.hpp | 2 inst/include/viennacl/linalg/sum.hpp | 2 inst/include/viennacl/linalg/svd.hpp | 22 inst/include/viennacl/linalg/toeplitz_matrix_operations.hpp | 2 inst/include/viennacl/linalg/tql2.hpp | 2 inst/include/viennacl/linalg/vandermonde_matrix_operations.hpp | 2 inst/include/viennacl/linalg/vector_operations.hpp | 111 + inst/include/viennacl/matrix.hpp | 99 + inst/include/viennacl/matrix_proxy.hpp | 2 inst/include/viennacl/meta/enable_if.hpp | 2 inst/include/viennacl/meta/predicate.hpp | 2 inst/include/viennacl/meta/result_of.hpp | 2 inst/include/viennacl/meta/tag_of.hpp | 2 inst/include/viennacl/misc/bandwidth_reduction.hpp | 2 inst/include/viennacl/misc/cuthill_mckee.hpp | 2 inst/include/viennacl/misc/gibbs_poole_stockmeyer.hpp | 2 inst/include/viennacl/ocl/backend.hpp | 2 inst/include/viennacl/ocl/command_queue.hpp | 2 inst/include/viennacl/ocl/context.hpp | 56 inst/include/viennacl/ocl/device.hpp | 2 inst/include/viennacl/ocl/device_utils.hpp | 2 inst/include/viennacl/ocl/enqueue.hpp | 2 inst/include/viennacl/ocl/error.hpp | 2 inst/include/viennacl/ocl/forwards.h | 2 inst/include/viennacl/ocl/handle.hpp | 1 inst/include/viennacl/ocl/kernel.hpp | 2 inst/include/viennacl/ocl/local_mem.hpp | 2 inst/include/viennacl/ocl/platform.hpp | 2 inst/include/viennacl/ocl/program.hpp | 2 inst/include/viennacl/ocl/utils.hpp | 2 inst/include/viennacl/range.hpp | 2 inst/include/viennacl/scalar.hpp | 2 inst/include/viennacl/scheduler/execute.hpp | 2 inst/include/viennacl/scheduler/execute_axbx.hpp | 2 inst/include/viennacl/scheduler/execute_elementwise.hpp | 44 inst/include/viennacl/scheduler/execute_generic_dispatcher.hpp | 2 inst/include/viennacl/scheduler/execute_matrix_dispatcher.hpp | 2 inst/include/viennacl/scheduler/execute_matrix_prod.hpp | 2 inst/include/viennacl/scheduler/execute_scalar_assign.hpp | 2 inst/include/viennacl/scheduler/execute_scalar_dispatcher.hpp | 2 inst/include/viennacl/scheduler/execute_util.hpp | 2 inst/include/viennacl/scheduler/execute_vector_dispatcher.hpp | 2 inst/include/viennacl/scheduler/forwards.h | 26 inst/include/viennacl/scheduler/io.hpp | 14 inst/include/viennacl/scheduler/preset.hpp | 2 inst/include/viennacl/slice.hpp | 2 inst/include/viennacl/sliced_ell_matrix.hpp | 2 inst/include/viennacl/toeplitz_matrix.hpp | 2 inst/include/viennacl/tools/adapter.hpp | 2 inst/include/viennacl/tools/entry_proxy.hpp | 2 inst/include/viennacl/tools/matrix_generation.hpp | 2 inst/include/viennacl/tools/matrix_size_deducer.hpp | 64 inst/include/viennacl/tools/random.hpp | 2 inst/include/viennacl/tools/sha1.hpp | 2 inst/include/viennacl/tools/shared_ptr.hpp | 2 inst/include/viennacl/tools/timer.hpp | 4 inst/include/viennacl/tools/tools.hpp | 2 inst/include/viennacl/traits/clear.hpp | 2 inst/include/viennacl/traits/context.hpp | 2 inst/include/viennacl/traits/fill.hpp | 2 inst/include/viennacl/traits/handle.hpp | 51 inst/include/viennacl/traits/row_major.hpp | 8 inst/include/viennacl/traits/size.hpp | 15 inst/include/viennacl/traits/start.hpp | 2 inst/include/viennacl/traits/stride.hpp | 2 inst/include/viennacl/vandermonde_matrix.hpp | 2 inst/include/viennacl/vector.hpp | 98 + inst/include/viennacl/vector_proxy.hpp | 2 inst/include/viennacl/version.hpp | 2 251 files changed, 2662 insertions(+), 2335 deletions(-)
Title: Format Significance Summaries for Reports
Description: Succinctly format significance summaries of
various models and tests (F-test, Chi-Sq-test, Fisher-test, T-test, and rank-significance). The main purpose is unified reporting and planning
of experimental results, working around issue such as the difficulty of
extracting model summary facts (such as with 'lm'/'glm'). This package also
includes empirical tests, such as bootstrap estimates.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between sigr versions 0.2.0 dated 2017-10-07 and 0.2.1 dated 2017-10-15
sigr-0.2.0/sigr/man/wrapCohenD.effsize.Rd |only sigr-0.2.1/sigr/DESCRIPTION | 10 - sigr-0.2.1/sigr/MD5 | 67 +++++++------ sigr-0.2.1/sigr/NAMESPACE | 9 + sigr-0.2.1/sigr/NEWS.md | 6 + sigr-0.2.1/sigr/R/ChiSqTest.R | 44 ++++++++ sigr-0.2.1/sigr/R/CohenD.R | 118 +++++++++++++---------- sigr-0.2.1/sigr/R/CorTest.R | 19 +++ sigr-0.2.1/sigr/R/EmpiricalFns.R | 4 sigr-0.2.1/sigr/R/FTest.R | 48 +++++++++ sigr-0.2.1/sigr/R/FisherTest.R | 29 ++++- sigr-0.2.1/sigr/R/TTest.R | 85 +++++++++++++++- sigr-0.2.1/sigr/R/pwr.R |only sigr-0.2.1/sigr/R/toPresentation.R | 2 sigr-0.2.1/sigr/README.md | 3 sigr-0.2.1/sigr/build/vignette.rds |binary sigr-0.2.1/sigr/inst/doc/lmExample.html | 4 sigr-0.2.1/sigr/inst/doc/sigrFormatting.html | 4 sigr-0.2.1/sigr/man/render.Rd | 2 sigr-0.2.1/sigr/man/render.sigr_cohend.Rd | 4 sigr-0.2.1/sigr/man/render.sigr_cortest.Rd | 2 sigr-0.2.1/sigr/man/render.sigr_emptest.Rd | 2 sigr-0.2.1/sigr/man/render.sigr_fishertest.Rd | 2 sigr-0.2.1/sigr/man/render.sigr_permtest.Rd | 2 sigr-0.2.1/sigr/man/render.sigr_pwr_htest.Rd |only sigr-0.2.1/sigr/man/render.sigr_ttest.Rd | 2 sigr-0.2.1/sigr/man/wrapChiSqTest.data.frame.Rd | 2 sigr-0.2.1/sigr/man/wrapChiSqTest.glm.Rd | 2 sigr-0.2.1/sigr/man/wrapChiSqTest.summary.glm.Rd |only sigr-0.2.1/sigr/man/wrapCohenD.Rd | 2 sigr-0.2.1/sigr/man/wrapCohenD.data.frame.Rd | 8 - sigr-0.2.1/sigr/man/wrapCohenD.numeric.Rd |only sigr-0.2.1/sigr/man/wrapCorTest.data.frame.Rd | 14 ++ sigr-0.2.1/sigr/man/wrapFTest.summary.lm.Rd |only sigr-0.2.1/sigr/man/wrapFisherTest.data.frame.Rd | 24 ++++ sigr-0.2.1/sigr/man/wrapPWR.Rd |only sigr-0.2.1/sigr/man/wrapPWR.power.htest.Rd |only sigr-0.2.1/sigr/man/wrapTTest.data.frame.Rd | 17 ++- sigr-0.2.1/sigr/man/wrapTTest.numeric.Rd |only 39 files changed, 408 insertions(+), 129 deletions(-)
Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications
as things that can be generated and manipulated programmatically.
Structural equation models may be specified with reticular action model matrices or paths,
linear structural relations matrices or paths, or
directly in matrix algebra.
Fit functions include full information maximum likelihood,
maximum likelihood, and weighted least squares.
Example models include confirmatory factor, multiple group, mixture
distribution, categorical threshold, modern test theory, differential
equations, state space, and many others.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
Michael D. Hunter [aut],
Daniel C. Hackett [ctb],
Julian Karch [ctb],
Andreas M. Brandmaier [ctb],
Joshua N. Pritikin [aut, cre],
Mahsa Zahery [aut],
Robert M. Kirkpatrick [aut],
Yang Wang [ctb],
Charles Driver [ctb],
Massachusetts Institute of Technology [cph],
S. G. Johnson [cph],
Association for Computing Machinery [cph],
Dieter Kraft [cph],
Stefan Wilhelm [cph],
Manjunath B G [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between OpenMx versions 2.7.17 dated 2017-09-08 and 2.7.18 dated 2017-10-15
DESCRIPTION | 8 MD5 | 77 ++++---- NAMESPACE | 1 R/MxCompare.R | 41 ++++ R/MxCompute.R | 52 +++++ R/MxDataWLS.R | 44 +++-- R/MxExpectationLISREL.R | 4 R/MxExpectationNormal.R | 66 ++++++- R/MxFitFunctionWLS.R | 28 ++- R/MxInterval.R | 183 ++++++++++----------- R/MxModel.R | 27 +++ R/MxRun.R | 13 + R/MxSummary.R | 17 + R/MxVersion.R | 2 inst/CITATION | 122 +++++++------- inst/models/nightly/FactorScores.R | 2 inst/models/nightly/InvalidComparisonDetection.R |only inst/models/nightly/JointAutoStrat.R | 2 inst/models/nightly/OneFactorOrdinal01_MatrixRaw.R | 2 inst/models/passing/RawCov.R | 2 inst/models/passing/SimpleMix.R | 26 ++ inst/models/passing/SummaryCheck.R | 28 +-- inst/models/passing/ifa-grm1.R | 43 ++++ inst/models/passing/jointFactorWls.R | 4 inst/models/passing/vcov.R |only man/mxComputeBenchmark.Rd |only man/mxDataWLS.Rd | 7 man/mxExpectationHiddenMarkov.Rd | 5 man/omxParallelCI.Rd | 74 +++++--- src/AlgebraFunctions.h | 6 src/Compute.cpp | 96 +++++++++++ src/Compute.h | 8 src/ComputeGD.cpp | 1 src/ComputeNM.cpp | 1 src/ComputeNR.cpp | 1 src/MarkovExpectation.cpp | 20 +- src/MarkovFF.cpp | 30 ++- src/glue.cpp | 28 ++- src/omxFIMLFitFunction.cpp | 4 src/omxSadmvnWrapper.h | 35 +--- src/omxWLSFitFunction.cpp | 158 ++++++++---------- 41 files changed, 862 insertions(+), 406 deletions(-)
Title: Formalized Plots for Self-Describing Data
Description: Creates fully-annotated plots with minimum guidance.
Since the data is self-describing, less effort is needed for
creating the plot. Generally expects data of class folded
(see 'fold' package). If attributes GUIDE and LABEL are present,
they will be used to create formal axis labels. Several aesthetics
are supported, such as reference lines, unity lines, smooths, and
log transformations.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between metaplot versions 0.1.6 dated 2017-08-14 and 0.2.1 dated 2017-10-15
DESCRIPTION | 8 MD5 | 43 +++- NAMESPACE | 12 + R/metaplot.R | 396 ++++++++++++++++++++++++++++++++++++++------- R/multiplot.R |only R/overlay.R |only inst/extdata/drug1001.fld |only inst/extdata/drug1001.spec | 2 man/axislabel.Rd | 7 man/boxplot.Rd | 15 + man/continuous.Rd | 3 man/corsplom.Rd | 11 - man/dens.Rd | 3 man/guide.Rd | 3 man/l.p.Rd | 4 man/label.Rd | 3 man/metapanel.Rd |only man/metaplot.Rd | 106 ++++++++++-- man/metastats.Rd |only man/model.Rd |only man/multiplot.Rd |only man/my.diag.panel.Rd | 5 man/overlay.Rd |only man/overlay.data.frame.Rd |only man/overlay.folded.Rd |only man/region.Rd |only man/scatter.Rd | 33 ++- man/u.p.Rd | 2 28 files changed, 542 insertions(+), 114 deletions(-)
Title: Classes and Methods for Lagged Objects
Description: Provides classes and methods for lagged objects.
Author: Georgi N. Boshnakov
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between lagged versions 0.1-0 dated 2017-05-21 and 0.1-1 dated 2017-10-15
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NAMESPACE | 3 ++- NEWS | 6 ++++++ R/lagged.R | 37 ++++++++++++++++++++++++++++--------- man/dataWithLagNames.Rd |only 6 files changed, 45 insertions(+), 18 deletions(-)
Title: Actual Evapotranspiration with Energy Balance Models
Description: Tools and functions to calculate actual Evapotranspiration
using surface energy balance models.
Author: Guillermo Federico Olmedo [aut, cre], Samuel Ortega-Farías [aut],
David Fonseca-Luengo [aut], Daniel de la Fuente-Sáiz [aut], Fernando Fuentes
Peñailillo [aut], María Victoria Munafó [ctb]
Maintainer: Guillermo Federico Olmedo <guillermo.olmedo@gmail.com>
Diff between water versions 0.6 dated 2017-03-31 and 0.7 dated 2017-10-15
DESCRIPTION | 17 +- MD5 | 108 +++++++------- NAMESPACE | 4 NEWS | 27 +++ R/water_LSEBclass.R |only R/water_METRIC.R | 117 +++++++++++++-- R/water_RSfunctions.R | 53 +++++++ R/water_WeatherStation.R | 177 +++++++++++++++-------- R/water_internals.R | 6 R/water_netRadiation.G.R | 27 ++- R/water_sensibleHeatFlux.R | 295 +++++++++++++++++++++++++++++++++------ build/vignette.rds |binary inst/doc/Landsat8.R | 6 inst/doc/Landsat8.Rmd | 6 inst/doc/Landsat8.html | 28 +-- inst/doc/METRIC_advanced.R | 8 - inst/doc/METRIC_advanced.Rmd | 10 - inst/doc/METRIC_advanced.html | 52 +++--- inst/doc/METRIC_simple.R | 16 +- inst/doc/METRIC_simple.Rmd | 18 +- inst/doc/METRIC_simple.html | 91 ++++++------ man/LAI.Rd | 11 + man/METRIC.EB.Rd | 62 +++++++- man/METRIC.G.Rd | 4 man/METRIC.Rn.Rd | 4 man/METRICtopo.Rd | 9 + man/SWtrasmisivity.Rd | 9 + man/albedo.Rd | 9 + man/calcAnchors.Rd | 22 +- man/calcH.Rd | 4 man/calcRadiance.Rd |only man/calcSR.Rd | 5 man/calcTOAr.Rd | 5 man/checkSRTMgrids.Rd | 4 man/createAoi.Rd | 4 man/incLWradiation.Rd | 8 + man/incSWradiation.Rd | 8 + man/loadImage.Rd | 5 man/loadImageSR.Rd | 5 man/momentumRoughnessLength.Rd | 12 + man/netRadiation.Rd | 9 + man/outLWradiation.Rd | 8 + man/plot.waterLSEB.Rd |only man/plot.waterWeatherStation.Rd | 4 man/prepareSRTMdata.Rd | 8 - man/print.waterLSEB.Rd |only man/print.waterWeatherStation.Rd | 4 man/read.WSdata.Rd | 23 ++- man/read.WSdata2.Rd | 9 - man/soilHeatFlux.Rd | 8 + man/solarAngles.Rd | 8 + man/surfaceTemperature.Rd | 8 + man/writeRaster.waterLSEB.Rd |only vignettes/Landsat8.Rmd | 6 vignettes/Landsat8.md |only vignettes/METRIC_advanced.Rmd | 10 - vignettes/METRIC_advanced.md |only vignettes/METRIC_simple.Rmd | 18 +- vignettes/METRIC_simple.md |only 59 files changed, 1041 insertions(+), 338 deletions(-)
Title: Analyse Sentiment of English Sentences
Description: Analyses sentiment of a sentence in English and assigns score to it. It can classify sentences to the following categories of sentiments:- Positive, Negative, very Positive, very negative,
Neutral. For a vector of sentences, it counts the number of sentences in each
category of sentiment.In calculating the score, negation and various degrees
of adjectives are taken into consideration. It deals only with English sentences.
Author: Subhasree Bose <subhasree10.7@gmail.com> with contributons from Saptarsi Goswami.
Maintainer: Subhasree Bose <subhasree10.7@gmail.com>
Diff between RSentiment versions 2.2 dated 2017-07-24 and 2.2.1 dated 2017-10-15
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/custom.R | 30 +++++++++++++++--------------- 3 files changed, 21 insertions(+), 21 deletions(-)
Title: Reading Bibliometric Data from Lattes Platform
Description: A simple API for downloading and reading xml data directly from Lattes <http://lattes.cnpq.br/>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetLattesData versions 0.5 dated 2017-09-05 and 0.6 dated 2017-10-15
DESCRIPTION | 8 +-- MD5 | 22 ++++---- NEWS.md | 5 ++ R/gld_get_lattes_data.R | 45 ++++++++++++++++-- R/gld_read_lattes_zip.R | 71 ++++++++++++++++++++++++++-- README.md | 14 ++++- build/vignette.rds |binary inst/doc/gld_vignette-ReadLattes.R | 4 + inst/doc/gld_vignette-ReadLattes.Rmd | 17 ++++-- inst/doc/gld_vignette-ReadLattes.html | 85 +++++++++++++++++++--------------- man/gld_get_lattes_data.Rd | 5 +- vignettes/gld_vignette-ReadLattes.Rmd | 17 ++++-- 12 files changed, 219 insertions(+), 74 deletions(-)
Title: Spatio-Temporal Bayesian Modelling Using R
Description: Fits, spatially predicts and temporally forecasts large amounts of space-time data using [1] Bayesian Gaussian Process (GP) Models, [2] Bayesian Auto-Regressive (AR) Models, and [3] Bayesian Gaussian Predictive Processes (GPP) based AR Models for spatio-temporal big-n problems. Version 3.0-0 provides truncated models for [1] and [3].
Author: K. Shuvo Bakar & Sujit K. Sahu
Maintainer: Shuvo Bakar <shuvo.bakar@gmail.com>
Diff between spTimer versions 2.0-1 dated 2015-08-18 and 3.0-0 dated 2017-10-15
spTimer-2.0-1/spTimer/src/Print.h |only spTimer-3.0-0/spTimer/DESCRIPTION | 14 spTimer-3.0-0/spTimer/MD5 | 62 - spTimer-3.0-0/spTimer/NAMESPACE | 49 + spTimer-3.0-0/spTimer/R/spAR.r | 29 spTimer-3.0-0/spTimer/R/spGP.r | 698 +++++++++++++-------- spTimer-3.0-0/spTimer/R/spGPP.r | 555 ++++++++++++++--- spTimer-3.0-0/spTimer/R/spTfnc.R | 129 +++- spTimer-3.0-0/spTimer/R/useful_commands.R | 91 ++ spTimer-3.0-0/spTimer/inst/CITATION | 4 spTimer-3.0-0/spTimer/inst/ChangeLog | 8 spTimer-3.0-0/spTimer/man/plot.spT.Rd | 3 spTimer-3.0-0/spTimer/man/predict.spT.Rd | 65 ++ spTimer-3.0-0/spTimer/man/spT.Gibbs.Rd | 87 ++ spTimer-3.0-0/spTimer/man/spT.validation.Rd | 3 spTimer-3.0-0/spTimer/man/spTimer-internal.Rd | 5 spTimer-3.0-0/spTimer/man/spTimer-package.Rd | 9 spTimer-3.0-0/spTimer/man/summary.spT.Rd | 5 spTimer-3.0-0/spTimer/src/common.c | 97 +-- spTimer-3.0-0/spTimer/src/equation_xb_ar.c | 4 spTimer-3.0-0/spTimer/src/equation_xb_gp.c | 89 +- spTimer-3.0-0/spTimer/src/equation_xb_gpp.c | 19 spTimer-3.0-0/spTimer/src/forecast_xb_gp.c | 1 spTimer-3.0-0/spTimer/src/gibbs_ar.c | 25 spTimer-3.0-0/spTimer/src/gibbs_gp.c | 22 spTimer-3.0-0/spTimer/src/gibbs_gpp.c | 26 spTimer-3.0-0/spTimer/src/header.h | 2 spTimer-3.0-0/spTimer/src/main_ar.h | 4 spTimer-3.0-0/spTimer/src/main_gp.h | 52 - spTimer-3.0-0/spTimer/src/main_gpp.h | 2 spTimer-3.0-0/spTimer/src/prediction_xb_gp.c | 3 spTimer-3.0-0/spTimer/src/prediction_xb_gpp.c | 827 ++++++++++++++++++++++++++ spTimer-3.0-0/spTimer/src/spTimer_init.c |only 33 files changed, 2396 insertions(+), 593 deletions(-)
Title: Fetch Economic and Financial Time Series Data from Public
Sources
Description: Download economic and financial time series from public sources,
including the St Louis Fed's FRED system, Yahoo Finance, the US Bureau of Labor Statistics,
the US Energy Information Administration, the World Bank, Eurostat, the European Central Bank,
the Bank of England, the UK's Office of National Statistics, Deutsche Bundesbank, and INSEE.
Author: Abiel Reinhart <abielr@gmail.com>
Maintainer: Abiel Reinhart <abielr@gmail.com>
Diff between pdfetch versions 0.2.2 dated 2017-07-23 and 0.2.3 dated 2017-10-15
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 5 +++++ R/pdfetch.R | 8 ++++---- man/pdfetch_EUROSTAT.Rd | 2 +- man/pdfetch_YAHOO.Rd | 2 +- 6 files changed, 20 insertions(+), 15 deletions(-)