Title: Temporal Sensory Data Analysis
Description: Analysis and visualization of data from temporal sensory methods, including for temporal check-all-that-apply (TCATA) and temporal dominance of sensations (TDS).
Author: J. C. Castura [aut, cre]
Maintainer: J. C. Castura <jcastura@compusense.com>
Diff between tempR versions 0.9.9.10 dated 2017-03-08 and 0.9.9.12 dated 2017-10-17
DESCRIPTION | 12 +++--- MD5 | 64 +++++++++++++++++----------------- R/tcata.R | 9 ++-- R/tds.R | 32 +++++++++++++++++ inst/CITATION | 2 - man/adjust.brightness.Rd | 1 man/bootstrap.band.Rd | 1 man/convert.tcata.Rd | 1 man/convert.tcategory.Rd | 1 man/count.selections.Rd | 1 man/dist.city.block.Rd | 1 man/fill.gaps.Rd | 1 man/get.chance.Rd | 1 man/get.decluttered.Rd | 1 man/get.differences.Rd | 1 man/get.dominance.rates.Rd | 1 man/get.mat.diff.sign.Rd | 1 man/get.significance.Rd | 1 man/get.significance.diff.Rd | 1 man/get.smooth.Rd | 1 man/get.times.Rd | 1 man/lengthwhichis.na.Rd | 1 man/make.palettes.Rd | 1 man/plot_pca.trajectories.Rd | 1 man/pretty_palette.Rd | 1 man/similarity.tcata.repeatability.Rd | 1 man/similarity.tcata.replication.Rd | 1 man/std.time.Rd | 1 man/tcata.diff.plot.Rd | 1 man/tcata.line.plot.Rd | 7 ++- man/tds.diff.plot.Rd | 26 +++++++++++++ man/tds.plot.Rd | 8 +++- man/tempR.Rd | 1 33 files changed, 112 insertions(+), 73 deletions(-)
Title: Regularized Autoregressive Hidden Semi Markov Model
Description: Fit Gaussian hidden Markov (or semi-Markov) models with / without autoregressive coefficients and with / without regularization. The fitting algorithm for the hidden Markov model is illustrated by Rabiner (1989) <doi:10.1109/5.18626>. The shrinkage estimation on the covariance matrices is based on the method by Ledoit et al. (2004) <doi:10.1016/S0047-259X(03)00096-4>. The shrinkage estimation on the autoregressive coefficients uses the elastic net shrinkage detailed in Zou et al. (2005) <doi:10.1111/j.1467-9868.2005.00503.x>.
Author: Zekun (Jack) Xu, Ye Liu
Maintainer: Zekun Xu <zekunxu@gmail.com>
Diff between rarhsmm versions 1.0.4 dated 2017-05-07 and 1.0.5 dated 2017-10-17
DESCRIPTION | 13 + MD5 | 53 ++++---- NAMESPACE | 6 R/RcppExports.R |only R/em.hmm.R | 243 +++++++------------------------------ R/em.semi.R | 321 +++++++++++-------------------------------------- R/hmm.predict.R | 67 +--------- R/hmm.sim.R | 7 - R/hsmm.predict.R | 96 ++------------ R/hsmm.sim.R | 7 - R/package.R | 10 - R/smooth.hmm.R | 137 ++------------------ R/smooth.semi.R | 192 +++-------------------------- R/viterbi.hmm.R | 6 R/viterbi.semi.R | 6 man/em.hmm.Rd | 8 - man/em.semi.Rd | 8 - man/hmm.sim.Rd | 2 man/hsmm.sim.Rd | 2 man/mvdnorm.Rd |only man/mvrnorm.Rd |only man/package-rarhsmm.Rd | 4 man/rmultinomial.Rd |only man/smooth.hmm.Rd | 1 man/smooth.semi.Rd | 1 man/viterbi.hmm.Rd | 1 man/viterbi.semi.Rd | 1 src |only 28 files changed, 275 insertions(+), 917 deletions(-)
Title: Multi-Resolution Scanning for Cross-Sample Differences
Description: An implementation of the MRS algorithm for comparison across distributions.
The model is based on a nonparametric process taking the form of a Markov model
that transitions between a "null" and an "alternative" state
on a multi-resolution partition tree of the sample space.
MRS effectively detects and characterizes a variety of underlying differences.
These differences can be visualized using several plotting functions.
Author: Jacopo Soriano and Li Ma
Maintainer: Jacopo Soriano <jsoriano.stat@gmail.com>
Diff between MRS versions 1.2.1 dated 2016-07-21 and 1.2.2 dated 2017-10-17
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 4 ++-- R/RcppExports.R | 6 +++--- src/RcppExports.cpp | 33 ++++++++++++++++++++++----------- 5 files changed, 36 insertions(+), 25 deletions(-)
Title: Exact Spike Train Inference via L0 Optimization
Description: An implementation of algorithms described in Jewell and Witten (2017) <arXiv:1703.08644>.
Author: Sean Jewell [aut, cre]
Maintainer: Sean Jewell <swjewell@uw.edu>
Diff between LZeroSpikeInference versions 1.0.1 dated 2017-05-18 and 1.0.3 dated 2017-10-17
DESCRIPTION | 6 +-- MD5 | 20 ++++++------ R/LZeroSpikeInference.R | 3 + R/cv.R | 53 ++++++++++++++++++++++++++------- R/segmentation.R | 60 +++++++++++++++++++++++++++++--------- R/simulate.R | 4 +- README.md | 29 +++++++++++++++++- man/LZeroSpikeInference.Rd | 3 + man/cv.estimateSpikes.Rd | 8 ++++- man/estimateSpikes.Rd | 8 ++++- tests/testthat/test_computeCost.R | 2 - 11 files changed, 151 insertions(+), 45 deletions(-)
More information about LZeroSpikeInference at CRAN
Permanent link
Title: Calculate the RR for the GAM
Description: To calculate the relative risk (RR) for the generalized additive model.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between gamRR versions 0.1.0 dated 2017-05-13 and 0.2.0 dated 2017-10-17
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/gamRR.R | 12 ++++++++++++ man/gamRR.Rd | 16 ++++++++++++++-- 4 files changed, 33 insertions(+), 9 deletions(-)
Title: Data Frames in R for Make
Description: A solution for reproducible code and
high-performance computing.
Author: William Michael Landau [aut, cre],
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@lilly.com>
Diff between drake versions 4.2.0 dated 2017-09-29 and 4.3.0 dated 2017-10-17
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Title: Tools for Analysis of Diversity and Similarity in Biological
Systems
Description: A set of tools for empirical analysis of diversity (a number and frequency of different types in population) and similarity (a number and frequency of shared types in two populations) in biological or ecological systems.
Author: Christoph Sadee, Maciej Pietrzak, Michal Seweryn, Grzegorz Rempala
Maintainer: Maciej Pietrzak <pietrzak.20@osu.edu>
Diff between divo versions 0.1.2 dated 2016-01-07 and 1.0.0 dated 2017-10-17
divo-0.1.2/divo/inst/DivO_DP.py |only divo-0.1.2/divo/inst/DivO_EnvCheck.py |only divo-0.1.2/divo/inst/DivO_Overlap.py |only divo-0.1.2/divo/man/SystemRequirements.Rd |only divo-1.0.0/divo/DESCRIPTION | 18 divo-1.0.0/divo/MD5 | 119 ++- divo-1.0.0/divo/NAMESPACE | 3 divo-1.0.0/divo/R/divo.R | 869 ++++++++++++++++------------ divo-1.0.0/divo/build/vignette.rds |binary divo-1.0.0/divo/inst/doc/divo-Manual.Rnw | 28 divo-1.0.0/divo/inst/doc/divo-Manual.pdf |binary divo-1.0.0/divo/inst/doc/divo-Vignette.R | 17 divo-1.0.0/divo/inst/doc/divo-Vignette.Rnw | 27 divo-1.0.0/divo/inst/doc/divo-Vignette.pdf |binary divo-1.0.0/divo/man/cvg.Rd | 2 divo-1.0.0/divo/man/divo.Rd | 2 divo-1.0.0/divo/man/dp.Rd | 2 divo-1.0.0/divo/man/dp.ht.Rd | 2 divo-1.0.0/divo/man/ens.Rd | 2 divo-1.0.0/divo/man/ens.ht.Rd | 2 divo-1.0.0/divo/man/i.in.Rd | 2 divo-1.0.0/divo/man/i.inp.Rd | 2 divo-1.0.0/divo/man/ji.Rd | 2 divo-1.0.0/divo/man/li.Rd | 2 divo-1.0.0/divo/man/mh.Rd | 2 divo-1.0.0/divo/man/pg.Rd | 2 divo-1.0.0/divo/man/pg.ht.Rd | 2 divo-1.0.0/divo/man/rd.Rd | 2 divo-1.0.0/divo/man/srd.Rd | 2 divo-1.0.0/divo/src |only divo-1.0.0/divo/vignettes/divo-Manual.Rnw | 28 divo-1.0.0/divo/vignettes/divo-Vignette.Rnw | 27 32 files changed, 674 insertions(+), 492 deletions(-)
Title: The Knockoff Filter for Controlled Variable Selection
Description: The knockoff filter is a general procedure for controlling the false discovery rate (FDR)
when performing variable selection.
For more information, see the website below and the accompanying paper: Candes et al.,
"Panning for Gold: Model-free Knockoffs for High-dimensional Controlled Variable Selection",
2016, <arXiv:1610.02351>.
Author: Rina Foygel Barber [ctb] (Development of the original fixed-design
Knockoffs),
Emmanuel Candes [ctb] (Development of Model-Free Knockoffs and original
fixed-design Knockoffs),
Lucas Janson [ctb] (Development of Model-Free Knockoffs),
Evan Patterson [aut] (Original R package for the original fixed-design
Knockoffs),
Matteo Sesia [aut, cre] (R package for Model-Free Knockoffs)
Maintainer: Matteo Sesia <msesia@stanford.edu>
Diff between knockoff versions 0.2.1 dated 2015-04-15 and 0.3.0 dated 2017-10-17
knockoff-0.2.1/knockoff/R/create.R |only knockoff-0.2.1/knockoff/R/stats_fs.R |only knockoff-0.2.1/knockoff/inst/doc/intro.R |only knockoff-0.2.1/knockoff/inst/doc/intro.Rmd |only knockoff-0.2.1/knockoff/inst/doc/intro.html |only knockoff-0.2.1/knockoff/inst/doc/sdp.R |only knockoff-0.2.1/knockoff/inst/doc/sdp.Rmd |only knockoff-0.2.1/knockoff/inst/doc/sdp.html |only knockoff-0.2.1/knockoff/inst/python |only knockoff-0.2.1/knockoff/man/knockoff.create.Rd |only knockoff-0.2.1/knockoff/man/knockoff.stat.fs.Rd |only knockoff-0.2.1/knockoff/man/knockoff.stat.lasso.Rd |only knockoff-0.2.1/knockoff/tests/testthat/InputStreamByteWrapper.class |only knockoff-0.2.1/knockoff/tests/testthat/MatlabServer.m |only knockoff-0.2.1/knockoff/tests/testthat/matlab_compat.R |only knockoff-0.2.1/knockoff/vignettes/intro.Rmd |only knockoff-0.2.1/knockoff/vignettes/sdp.Rmd |only knockoff-0.3.0/knockoff/DESCRIPTION | 48 +- knockoff-0.3.0/knockoff/MD5 | 113 +++-- knockoff-0.3.0/knockoff/NAMESPACE | 29 + knockoff-0.3.0/knockoff/NEWS | 16 knockoff-0.3.0/knockoff/R/create_fixed.R |only knockoff-0.3.0/knockoff/R/create_gaussian.R |only knockoff-0.3.0/knockoff/R/create_second_order.R |only knockoff-0.3.0/knockoff/R/knockoff.R | 150 +------ knockoff-0.3.0/knockoff/R/knockoff_filter.R |only knockoff-0.3.0/knockoff/R/solve_asdp.R |only knockoff-0.3.0/knockoff/R/solve_equi.R |only knockoff-0.3.0/knockoff/R/solve_sdp.R |only knockoff-0.3.0/knockoff/R/stats_forward_selection.R |only knockoff-0.3.0/knockoff/R/stats_glmnet.R |only knockoff-0.3.0/knockoff/R/stats_glmnet_cv.R |only knockoff-0.3.0/knockoff/R/stats_lasso.R | 200 +++++----- knockoff-0.3.0/knockoff/R/stats_lasso_bin.R |only knockoff-0.3.0/knockoff/R/stats_lasso_cv.R |only knockoff-0.3.0/knockoff/R/stats_lasso_cv_bin.R |only knockoff-0.3.0/knockoff/R/stats_random_forest.R |only knockoff-0.3.0/knockoff/R/stats_sqrt_lasso.R |only knockoff-0.3.0/knockoff/R/stats_stability_selection.R |only knockoff-0.3.0/knockoff/R/util.R | 63 ++- knockoff-0.3.0/knockoff/build/vignette.rds |binary knockoff-0.3.0/knockoff/inst/doc/advanced.R |only knockoff-0.3.0/knockoff/inst/doc/advanced.Rmd |only knockoff-0.3.0/knockoff/inst/doc/advanced.html |only knockoff-0.3.0/knockoff/inst/doc/fixed.R |only knockoff-0.3.0/knockoff/inst/doc/fixed.Rmd |only knockoff-0.3.0/knockoff/inst/doc/fixed.html |only knockoff-0.3.0/knockoff/inst/doc/hiv.R | 13 knockoff-0.3.0/knockoff/inst/doc/hiv.Rmd | 7 knockoff-0.3.0/knockoff/inst/doc/hiv.html | 148 ++++--- knockoff-0.3.0/knockoff/inst/doc/knockoff.R |only knockoff-0.3.0/knockoff/inst/doc/knockoff.Rmd |only knockoff-0.3.0/knockoff/inst/doc/knockoff.html |only knockoff-0.3.0/knockoff/man/create.fixed.Rd |only knockoff-0.3.0/knockoff/man/create.gaussian.Rd |only knockoff-0.3.0/knockoff/man/create.second_order.Rd |only knockoff-0.3.0/knockoff/man/create.solve_asdp.Rd |only knockoff-0.3.0/knockoff/man/create.solve_equi.Rd |only knockoff-0.3.0/knockoff/man/create.solve_sdp.Rd |only knockoff-0.3.0/knockoff/man/create_equicorrelated.Rd |only knockoff-0.3.0/knockoff/man/create_sdp.Rd |only knockoff-0.3.0/knockoff/man/decompose.Rd |only knockoff-0.3.0/knockoff/man/divide_sdp.Rd |only knockoff-0.3.0/knockoff/man/fs.Rd | 5 knockoff-0.3.0/knockoff/man/knockoff.Rd | 34 + knockoff-0.3.0/knockoff/man/knockoff.filter.Rd | 114 ++++- knockoff-0.3.0/knockoff/man/knockoff.threshold.Rd | 13 knockoff-0.3.0/knockoff/man/lasso_max_lambda.Rd | 15 knockoff-0.3.0/knockoff/man/print.knockoff.result.Rd |only knockoff-0.3.0/knockoff/man/sqrt_lasso_coeffs.Rd |only knockoff-0.3.0/knockoff/man/stability_selection_importance.Rd |only knockoff-0.3.0/knockoff/man/stat.forward_selection.Rd |only knockoff-0.3.0/knockoff/man/stat.glmnet_coefdiff.Rd |only knockoff-0.3.0/knockoff/man/stat.glmnet_lambdadiff.Rd |only knockoff-0.3.0/knockoff/man/stat.glmnet_lambdasmax.Rd |only knockoff-0.3.0/knockoff/man/stat.lasso_coefdiff.Rd |only knockoff-0.3.0/knockoff/man/stat.lasso_coefdiff_bin.Rd |only knockoff-0.3.0/knockoff/man/stat.lasso_lambdadiff.Rd |only knockoff-0.3.0/knockoff/man/stat.lasso_lambdadiff_bin.Rd |only knockoff-0.3.0/knockoff/man/stat.lasso_lambdasmax.Rd |only knockoff-0.3.0/knockoff/man/stat.lasso_lambdasmax_bin.Rd |only knockoff-0.3.0/knockoff/man/stat.random_forest.Rd |only knockoff-0.3.0/knockoff/man/stat.sqrt_lasso.Rd |only knockoff-0.3.0/knockoff/man/stat.stability_selection.Rd |only knockoff-0.3.0/knockoff/man/vectorize_matrix.Rd |only knockoff-0.3.0/knockoff/man/verify_stat_depends.Rd |only knockoff-0.3.0/knockoff/tests/testthat.R | 3 knockoff-0.3.0/knockoff/tests/testthat/test_create.R | 73 ++- knockoff-0.3.0/knockoff/tests/testthat/test_filter.R | 36 + knockoff-0.3.0/knockoff/tests/testthat/test_stats.R | 28 - knockoff-0.3.0/knockoff/vignettes/advanced.Rmd |only knockoff-0.3.0/knockoff/vignettes/fixed.Rmd |only knockoff-0.3.0/knockoff/vignettes/hiv.Rmd | 7 knockoff-0.3.0/knockoff/vignettes/knockoff.Rmd |only 94 files changed, 657 insertions(+), 458 deletions(-)
Title: An Extensible Approach to Flux Balance Analysis
Description: A simple package for Flux Balance Analysis and related
metabolic modeling techniques. Functions are provided for: parsing
models in tabular format, converting parsed metabolic models to input
formats for common linear programming solvers, and
evaluating and applying gene-protein-reaction mappings. In addition, there
are wrappers to parse a model, select a solver, find the metabolic fluxes,
and return the results applied to the original model. Compared to other
packages in this field, this package puts a much heavier focus on
providing reusable components that can be used in the design of new
implementation of new techniques, in particular those that involve large
parameter sweeps.
Author: Max Conway [aut, cre]
Maintainer: Max Conway <conway.max1@gmail.com>
Diff between fbar versions 0.1.23 dated 2017-01-14 and 0.3.3 dated 2017-10-17
fbar-0.1.23/fbar/tests/testthat/test-glpk.R |only fbar-0.1.23/fbar/tests/testthat/test-gurobi.R |only fbar-0.3.3/fbar/DESCRIPTION | 22 fbar-0.3.3/fbar/MD5 | 87 +-- fbar-0.3.3/fbar/NAMESPACE | 4 fbar-0.3.3/fbar/NEWS.md | 31 + fbar-0.3.3/fbar/R/convenience_wrappers.R | 40 - fbar-0.3.3/fbar/R/data.R | 6 fbar-0.3.3/fbar/R/deprecated.R |only fbar-0.3.3/fbar/R/fbar.R | 2 fbar-0.3.3/fbar/R/gene_associate.R | 26 fbar-0.3.3/fbar/R/gene_expression_evaluation.R | 2 fbar-0.3.3/fbar/R/metabolite_utilities.R |only fbar-0.3.3/fbar/R/parsing_and_conversion.R | 276 +--------- fbar-0.3.3/fbar/README.md | 4 fbar-0.3.3/fbar/build/vignette.rds |binary fbar-0.3.3/fbar/data/iJO1366.rda |binary fbar-0.3.3/fbar/inst/doc/Introduction.html | 8 fbar-0.3.3/fbar/inst/doc/Multi-Objective_Optimization_case_study.R | 2 fbar-0.3.3/fbar/inst/doc/Multi-Objective_Optimization_case_study.Rmd | 2 fbar-0.3.3/fbar/inst/doc/Multi-Objective_Optimization_case_study.html | 22 fbar-0.3.3/fbar/inst/doc/Tutorial.R | 31 - fbar-0.3.3/fbar/inst/doc/Tutorial.Rmd | 15 fbar-0.3.3/fbar/inst/doc/Tutorial.html | 23 fbar-0.3.3/fbar/man/decompose_metabolites.Rd |only fbar-0.3.3/fbar/man/ecoli_core.Rd | 1 fbar-0.3.3/fbar/man/expanded_to_ROI.Rd | 3 fbar-0.3.3/fbar/man/expanded_to_glpk.Rd | 26 fbar-0.3.3/fbar/man/expanded_to_gurobi.Rd | 27 fbar-0.3.3/fbar/man/expanded_to_reactiontbl.Rd | 1 fbar-0.3.3/fbar/man/fbar.Rd | 3 fbar-0.3.3/fbar/man/find_flux_variability_df.Rd | 3 fbar-0.3.3/fbar/man/find_fluxes_df.Rd | 3 fbar-0.3.3/fbar/man/gene_associate.Rd | 21 fbar-0.3.3/fbar/man/gene_eval.Rd | 4 fbar-0.3.3/fbar/man/iJO1366.Rd | 7 fbar-0.3.3/fbar/man/parse_met_list.Rd | 1 fbar-0.3.3/fbar/man/reactiontbl_to_expanded.Rd | 1 fbar-0.3.3/fbar/man/reactiontbl_to_gurobi.Rd | 26 fbar-0.3.3/fbar/man/recompose_metabolites.Rd |only fbar-0.3.3/fbar/man/split_on_arrow.Rd | 1 fbar-0.3.3/fbar/tests/testthat.R | 4 fbar-0.3.3/fbar/tests/testthat/gurobi.log |only fbar-0.3.3/fbar/tests/testthat/test-gene_expression_processing.R | 18 fbar-0.3.3/fbar/tests/testthat/test-metabolite-parsing.R | 37 + fbar-0.3.3/fbar/tests/testthat/test-parsing_and_conversion.R | 48 - fbar-0.3.3/fbar/vignettes/Multi-Objective_Optimization_case_study.Rmd | 2 fbar-0.3.3/fbar/vignettes/Tutorial.Rmd | 15 48 files changed, 362 insertions(+), 493 deletions(-)
Title: Easy Model-Builder Functions for 'OpenMx'
Description: Utilities for building certain kinds of common matrices and models in
the extended structural equation modeling package, 'OpenMx'.
Author: Michael D. Hunter [aut, cre],
Joshua N. Pritikin [ctb]
Maintainer: Michael D. Hunter <mhunter.ou@gmail.com>
Diff between EasyMx versions 0.1-3 dated 2017-05-02 and 0.2 dated 2017-10-17
DESCRIPTION | 13 ++-- MD5 | 17 +++-- R/emxMatrixBuilders.R | 25 ++++++-- R/emxModelBuilders.R | 131 ++++++++++++++++++++++++++++++++++------------ demo/00Index | 3 - demo/emxExamples.R | 13 +++- demo/jointFactor.R |only man/emxFactorModel.Rd | 11 ++- man/emxRegressionModel.Rd | 3 - man/emxThresholds.Rd | 3 - 10 files changed, 157 insertions(+), 62 deletions(-)
Title: Venn Diagrams in 2D and 3D
Description: Calculate and plot Venn diagrams in 2D and 3D.
Author: Zehao Xu [aut, cre], R. Wayne Oldford [aut], Martin Lysy [ctb]
Maintainer: Zehao Xu <z267xu@uwaterloo.ca>
Diff between vennplot versions 0.9.02 dated 2017-04-21 and 1.0 dated 2017-10-17
vennplot-0.9.02/vennplot/R/vennplot-package.R |only vennplot-0.9.02/vennplot/man/vennplot-package.Rd |only vennplot-0.9.02/vennplot/src/vennCpp2.cpp |only vennplot-1.0/vennplot/DESCRIPTION | 15 vennplot-1.0/vennplot/MD5 | 22 vennplot-1.0/vennplot/NAMESPACE | 30 vennplot-1.0/vennplot/R/RcppExports.R | 60 vennplot-1.0/vennplot/R/sharks.R | 13 vennplot-1.0/vennplot/R/vennplot.R | 2202 +++++++++++++---------- vennplot-1.0/vennplot/data/sharks.rda |binary vennplot-1.0/vennplot/man/sharks.Rd | 13 vennplot-1.0/vennplot/man/vennplot.Rd | 142 - vennplot-1.0/vennplot/src/RcppExports.cpp | 179 + vennplot-1.0/vennplot/src/vennCpp6.cpp |only 14 files changed, 1622 insertions(+), 1054 deletions(-)
Title: Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Description: Recursive partitioning for varying coefficient generalized linear models and ordinal linear mixed models. Special features are coefficient-wise partitioning, non-varying coefficients and partitioning of time-varying variables in longitudinal regression.
Author: Reto Buergin [aut, cre, cph],
Gilbert Ritschard [ctb, ths]
Maintainer: Reto Buergin <rbuergin@gmx.ch>
Diff between vcrpart versions 1.0-0 dated 2017-08-22 and 1.0-1 dated 2017-10-17
DESCRIPTION | 8 ++-- MD5 | 14 ++++---- NEWS | 11 ++++++ R/tvcm-utils.R | 5 ++ inst/doc/vcrpart.Rnw | 3 + inst/doc/vcrpart.pdf |binary src/olmm.c | 84 +++++++++++++++++++++++++++++--------------------- vignettes/vcrpart.Rnw | 3 + 8 files changed, 80 insertions(+), 48 deletions(-)
Title: Random Forests for Survival, Regression, and Classification
(RF-SRC)
Description: A unified treatment of Breiman's random forests for survival, regression and classification problems based on Ishwaran and Kogalur's random survival forests (RSF) package. Now extended to include multivariate and unsupervised forests. Also includes quantile regression forests for univariate and multivariate training/testing settings. The package runs in both serial and parallel (OpenMP) modes.
Author: Hemant Ishwaran <hemant.ishwaran@gmail.com>, Udaya B. Kogalur <ubk@kogalur.com>
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 2.5.0 dated 2017-08-07 and 2.5.1 dated 2017-10-17
DESCRIPTION | 8 MD5 | 95 - NAMESPACE | 12 R/cindex.R | 2 R/data.utilities.R | 186 ++- R/distance.R | 16 R/factor.utilities.R | 1 R/find.interaction.rfsrc.R | 20 R/generic.impute.rfsrc.R | 21 R/generic.predict.rfsrc.R | 261 ++++ R/impute.rfsrc.R | 63 + R/max.subtree.rfsrc.R | 387 ++++++ R/partial.rfsrc.R | 110 + R/plot.competing.risk.rfsrc.R | 3 R/plot.rfsrc.R | 30 R/plot.survival.rfsrc.R | 89 + R/plot.variable.rfsrc.R | 250 +++- R/predict.rfsrc.R | 2 R/print.rfsrc.R | 34 R/quantileReg.rfsrc.R | 20 R/rfsrc.R | 296 ++++- R/rfsrcSyn.rfsrc.R | 83 + R/stat.split.rfsrc.R | 110 + R/utilities.R | 84 + R/var.select.rfsrc.R | 112 + R/vimp.rfsrc.R | 8 cleanup |only configure |only configure.ac | 72 - data/breast.rda |binary data/follic.rda |binary data/hd.rda |binary data/nutrigenomic.rda |binary data/pbc.rda |binary data/vdv.rda |binary data/veteran.rda |binary data/wihs.rda |binary inst/NEWS | 12 man/impute.rfsrc.Rd | 2 man/nutrigenomic.Rd | 42 man/plot.variable.rfsrc.Rd | 28 man/predict.rfsrc.Rd | 8 man/randomForestSRC_package.Rd | 3 man/rfsrc.Rd | 21 man/rfsrcSyn.Rd | 2 man/var.select.rfsrc.Rd | 2 src/Makevars.in | 4 src/Makevars.win |only src/randomForestSRC.c | 2372 ++++++++++++++++++++++++++--------------- src/randomForestSRC.h | 221 ++- 50 files changed, 3858 insertions(+), 1234 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Nested Association Mapping
Description: Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.
Author: Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between NAM versions 1.5.3 dated 2017-08-15 and 1.5.4 dated 2017-10-17
NAM-1.5.3/NAM/inst/add/Ggamma.R |only NAM-1.5.3/NAM/inst/add/M.R |only NAM-1.5.3/NAM/man/cleanREP.Rd |only NAM-1.5.3/NAM/man/reference.Rd |only NAM-1.5.4/NAM/DESCRIPTION | 13 +- NAM-1.5.4/NAM/MD5 | 42 +++----- NAM-1.5.4/NAM/R/RcppExports.R | 4 NAM-1.5.4/NAM/R/gmm.R | 30 +----- NAM-1.5.4/NAM/R/snp.R | 22 ++-- NAM-1.5.4/NAM/R/wgr.R | 35 ++----- NAM-1.5.4/NAM/inst/add/cvNAM.R | 45 ++++----- NAM-1.5.4/NAM/inst/add/sparseGMM.R | 8 - NAM-1.5.4/NAM/inst/doc/gwa_description.pdf |binary NAM-1.5.4/NAM/inst/doc/vignette1.Rmd | 24 ++-- NAM-1.5.4/NAM/inst/doc/vignette1.html | 28 ++--- NAM-1.5.4/NAM/inst/doc/vignette2.html | 4 NAM-1.5.4/NAM/man/Internals.Rd | 4 NAM-1.5.4/NAM/man/NAM-package.Rd | 4 NAM-1.5.4/NAM/man/gmm.Rd | 8 - NAM-1.5.4/NAM/man/snpQC.Rd | 25 ++++- NAM-1.5.4/NAM/man/wgr.Rd | 35 +++---- NAM-1.5.4/NAM/src/Functions.cpp | 144 ++++++++++++++--------------- NAM-1.5.4/NAM/src/RcppExports.cpp | 8 - NAM-1.5.4/NAM/vignettes/vignette1.Rmd | 24 ++-- 24 files changed, 244 insertions(+), 263 deletions(-)
Title: Marine Regions Data from 'Marineregions.org'
Description: Tools to get marine regions data from
<http://www.marineregions.org/>. Includes tools to get region metadata,
as well as data in 'GeoJSON' format, as well as Shape files. Use cases
include using data downstream to visualize 'geospatial' data by marine
region, mapping variation among different regions, and more.
Author: Scott Chamberlain [aut, cre],
Francois Michonneau [ctb],
Pieter Provoost [ctb],
Michael Sumner [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between mregions versions 0.1.4 dated 2016-12-07 and 0.1.6 dated 2017-10-17
DESCRIPTION | 21 ++++++----- LICENSE | 2 - MD5 | 62 ++++++++++++++++++---------------- NEWS.md | 18 +++++++-- R/as_wkt.R | 4 -- R/mr_features_get.R | 41 ++++++++++++++++------ R/region_geojson.R | 2 - R/region_names_search.R | 16 ++------ R/region_shp.R | 8 ---- R/zzz.R | 2 - README.md | 6 ++- build/vignette.rds |binary inst/doc/mregions.Rmd | 51 ++++++++++++++------------- inst/doc/mregions.html | 51 ++++++++++++++------------- inst/vign/mregions.md | 51 ++++++++++++++------------- man/mr_as_wkt.Rd | 5 -- man/mr_features_get.Rd | 26 ++++++++++---- man/mr_geo_code.Rd | 1 man/mr_geojson.Rd | 1 man/mr_layers.Rd | 1 man/mr_names.Rd | 1 man/mr_names_search.Rd | 13 ++----- man/mr_obis_eez_id.Rd | 1 man/mr_place_relations.Rd | 1 man/mr_place_types.Rd | 1 man/mr_records_by_type.Rd | 1 man/mr_rev_geo_code.Rd | 1 man/mr_shp.Rd | 9 ---- man/mregions-package.Rd | 4 +- tests/testthat/helper-mregions.R |only tests/testthat/test-mr_features_get.R |only tools |only vignettes/mregions.Rmd | 51 ++++++++++++++------------- 33 files changed, 229 insertions(+), 223 deletions(-)
Title: Query Cache for HTTP Clients
Description: In order to improve performance for HTTP API clients, 'httpcache'
provides simple tools for caching and invalidating cache. It includes the
HTTP verb functions GET, PUT, PATCH, POST, and DELETE, which are drop-in
replacements for those in the 'httr' package. These functions are cache-aware
and provide default settings for cache invalidation suitable for RESTful
APIs; the package also enables custom cache-management strategies.
Finally, 'httpcache' includes a basic logging framework to facilitate the
measurement of HTTP request time and cache performance.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal.p.richardson@gmail.com>
Diff between httpcache versions 1.0.2 dated 2017-08-28 and 1.1.0 dated 2017-10-17
httpcache-1.0.2/httpcache/R/download.R |only httpcache-1.0.2/httpcache/man/cachedDownload.Rd |only httpcache-1.0.2/httpcache/tests/testthat/test-download.R |only httpcache-1.1.0/httpcache/DESCRIPTION | 11 ++- httpcache-1.1.0/httpcache/MD5 | 27 ++++----- httpcache-1.1.0/httpcache/NAMESPACE | 2 httpcache-1.1.0/httpcache/R/cache.R | 6 +- httpcache-1.1.0/httpcache/R/http-verbs.R | 2 httpcache-1.1.0/httpcache/build/vignette.rds |binary httpcache-1.1.0/httpcache/inst/doc/httpcache.Rmd | 21 +++---- httpcache-1.1.0/httpcache/inst/doc/httpcache.html | 44 ++++++++------- httpcache-1.1.0/httpcache/man/cached-http-verbs.Rd | 2 httpcache-1.1.0/httpcache/man/uncached.Rd | 6 +- httpcache-1.1.0/httpcache/tests/testthat/helper.R | 2 httpcache-1.1.0/httpcache/tests/testthat/test-cache.R | 2 httpcache-1.1.0/httpcache/vignettes/httpcache.Rmd | 21 +++---- 16 files changed, 77 insertions(+), 69 deletions(-)
Title: Use Image in 'ggplot2'
Description: Supports image files and graphic objects to be visualized in
'ggplot2' graphic system.
Author: Guangchuang Yu [aut, cre] (0000-0002-6485-8781)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggimage versions 0.0.4 dated 2017-03-29 and 0.0.6 dated 2017-10-17
DESCRIPTION | 17 ++++--- MD5 | 43 ++++++++++--------- NAMESPACE | 7 ++- NEWS | 8 +++ R/geom_emoji.R | 2 R/geom_flag.R | 2 R/geom_icon.R |only R/geom_image.R | 104 ++++++++++++++++++++++++++++++++--------------- R/geom_phylopic.R | 2 R/geom_pokemon.R | 11 +++- R/theme.R | 3 - build/vignette.rds |binary inst/doc/ggimage.html | 28 ++++++------ man/geom_emoji.Rd | 1 man/geom_flag.Rd | 1 man/geom_icon.Rd |only man/geom_image.Rd | 1 man/geom_phylopic.Rd | 1 man/geom_pokemon.Rd | 1 man/geom_subview.Rd | 1 man/list.flag.Rd | 1 man/list.icon.Rd |only man/list.pokemon.Rd | 1 man/theme_transparent.Rd | 3 - 24 files changed, 146 insertions(+), 92 deletions(-)
Title: 'GeoJSON' Topology Calculations and Operations
Description: Tools for doing calculations and manipulations on 'GeoJSON',
a 'geospatial' data interchange format (<https://tools.ietf.org/html/rfc7946>).
'GeoJSON' is also valid 'JSON'.
Author: Scott Chamberlain [aut, cre],
Niels Lohmann [cph]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between geoops versions 0.1.0 dated 2017-10-14 and 0.1.2 dated 2017-10-17
geoops-0.1.0/geoops/R/bound_box.R |only geoops-0.1.0/geoops/man/geo_bbox.Rd |only geoops-0.1.0/geoops/src/square_grid.cpp |only geoops-0.1.2/geoops/DESCRIPTION | 6 geoops-0.1.2/geoops/MD5 | 73 geoops-0.1.2/geoops/NAMESPACE | 1 geoops-0.1.2/geoops/NEWS.md | 11 geoops-0.1.2/geoops/R/bearing.R | 4 geoops-0.1.2/geoops/R/destination.R | 6 geoops-0.1.2/geoops/R/distance.R | 7 geoops-0.1.2/geoops/R/geoops-package.R | 32 geoops-0.1.2/geoops/README.md | 27 geoops-0.1.2/geoops/inst/doc/geoops_vignette.R | 2 geoops-0.1.2/geoops/inst/doc/geoops_vignette.Rmd | 6 geoops-0.1.2/geoops/inst/doc/geoops_vignette.html | 10 geoops-0.1.2/geoops/inst/ignore/bound_box.R |only geoops-0.1.2/geoops/inst/ignore/square_grid.cpp |only geoops-0.1.2/geoops/man/geo_bearing.Rd | 4 geoops-0.1.2/geoops/man/geo_destination.Rd | 6 geoops-0.1.2/geoops/man/geo_distance.Rd | 7 geoops-0.1.2/geoops/man/geoops-package.Rd | 35 geoops-0.1.2/geoops/src/along.cpp | 3 geoops-0.1.2/geoops/src/area.cpp | 5 geoops-0.1.2/geoops/src/bbox_polygon.cpp | 3 geoops-0.1.2/geoops/src/bearing.cpp | 3 geoops-0.1.2/geoops/src/circle.cpp | 5 geoops-0.1.2/geoops/src/destination.cpp | 3 geoops-0.1.2/geoops/src/distance.cpp | 6 geoops-0.1.2/geoops/src/geojson_helpers.cpp | 11 geoops-0.1.2/geoops/src/get_coords.cpp | 3 geoops-0.1.2/geoops/src/inside.cpp | 7 geoops-0.1.2/geoops/src/json.h |14901 ++++++++++--------- geoops-0.1.2/geoops/src/line_distance.cpp | 12 geoops-0.1.2/geoops/src/midpoint.cpp | 3 geoops-0.1.2/geoops/src/planepoint.cpp | 3 geoops-0.1.2/geoops/src/pointgrid.cpp | 3 geoops-0.1.2/geoops/src/triangle_grid.cpp | 3 geoops-0.1.2/geoops/src/version.cpp | 5 geoops-0.1.2/geoops/tools/img/unnamed-chunk-20-1.png |binary geoops-0.1.2/geoops/vignettes/geoops_vignette.Rmd | 6 40 files changed, 8436 insertions(+), 6786 deletions(-)
Title: Standard Normal Homogeneity Test
Description: Implementation of robust and non-robust Standard Normal Homogeneity
Test (SNHT) for changepoint detection. This test statistic is equal sided,
as proposed in "Homogenization of Radiosonde Temperature Time Series Using
Innovation Statistics" by Haimberger, L., 2007. However, the statistic contains
an estimate of sigma^2 in the denominator instead of sigma, which seems to
be a more appropriate value (based on the paper "Homogenization of Swedish
temperature data. Part I: Homogeneity test for linear trends." by Alexandersson,
H., and A. Moberg, 1997).
Author: Josh Browning [aut, cre],
Carina Schneider [aut]
Maintainer: Josh Browning <rockclimber112358@gmail.com>
Diff between snht versions 1.0.4 dated 2016-04-03 and 1.0.5 dated 2017-10-17
DESCRIPTION | 8 MD5 | 56 ++--- NAMESPACE | 38 +-- R/createCandidateMatrix.R | 88 ++++---- R/pairwiseSNHT.R | 292 ++++++++++++++--------------- R/plotSNHT.R | 116 +++++------ R/removeSeasonalPeriod.R | 68 +++--- R/robustSNHT.R | 304 +++++++++++++++--------------- R/robustSNHTunequal.R | 222 +++++++++++----------- R/snht.R | 266 +++++++++++++------------- R/unconfoundCandidateMatrix.R | 256 ++++++++++++------------- build/vignette.rds |binary inst/doc/pairwiseSNHT.R | 178 ++++++++--------- inst/doc/pairwiseSNHT.Rnw | 392 +++++++++++++++++++-------------------- inst/doc/pairwiseSNHT.pdf |binary inst/doc/snht.R | 154 +++++++-------- inst/doc/snht.pdf |binary man/createCandidateMatrix.Rd | 73 +++---- man/getPairs.Rd | 47 ++-- man/getUniquePairs.Rd | 45 ++-- man/pairwiseSNHT.Rd | 165 ++++++++-------- man/plotSNHT.Rd | 57 ++--- man/removeSeasonalPeriod.Rd | 55 ++--- man/robustSNHT.Rd | 159 +++++++-------- man/robustSNHTunequal.Rd | 141 ++++++-------- man/snht-package.Rd | 31 +-- man/snht.Rd | 209 ++++++++++---------- man/unconfoundCandidateMatrix.Rd | 89 ++++---- vignettes/pairwiseSNHT.Rnw | 392 +++++++++++++++++++-------------------- 29 files changed, 1953 insertions(+), 1948 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to the decennial US Census and American Community Survey APIs and
the US Census Bureau's geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for many
geographies.
Author: Kyle Walker [aut, cre],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle.walker@tcu.edu>
Diff between tidycensus versions 0.2 dated 2017-08-09 and 0.3 dated 2017-10-17
DESCRIPTION | 8 +-- MD5 | 20 ++++----- R/acs.R | 57 +++++++++++++++++++++++---- R/census.R | 34 ++++++++++++---- R/helpers.R | 105 ++++++++++++++++++++++++++++++++++++++++++++++++++ R/load_data.R | 36 ++++++++++++----- R/search_variables.R | 9 +++- README.md | 13 ++++++ man/get_acs.Rd | 21 ++++++++-- man/get_decennial.Rd | 16 ++++++- man/load_variables.Rd | 3 - 11 files changed, 273 insertions(+), 49 deletions(-)
Title: Statistical Inference and Sensitivity Analysis for Instrumental
Variables Model
Description: Contains functions for carrying out instrumental variable
estimation of causal effects, including power analysis, sensitivity analysis,
and diagnostics.
Author: Yang Jiang, Hyunseung Kang, Dylan Small, and Qingyuan Zhao
Maintainer: Hyunseung Kang <hyunseung@stat.wisc.edu>
Diff between ivmodel versions 1.7 dated 2017-08-18 and 1.7.1 dated 2017-10-17
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 +- R/barplot.R | 18 +++++++++++++++--- build/partial.rdb |binary man/iv.diagnosis.Rd | 8 ++++++-- 6 files changed, 31 insertions(+), 15 deletions(-)
Title: Open Machine Learning and Open Data Platform
Description: We provide an R interface to 'OpenML.org' which is an online machine learning platform where researchers can access open data, download and upload data sets, share their machine learning tasks and experiments and organize them online to work and collaborate with other researchers.
The R interface allows to query for data sets with specific properties, and allows the downloading and uploading of data sets, tasks, flows and runs.
See <https://www.openml.org/guide/api> for more information.
Author: Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>,
Bernd Bischl <bernd_bischl@gmx.net>,
Dominik Kirchhoff <dom.kirchhoff@gmail.com>,
Michel Lang <michellang@gmail.com>,
Benjamin Hofner <benjamin.hofner@fau.de>,
Jakob Bossek <j.bossek@gmail.com>,
Pascal Kerschke <kerschke@uni-muenster.de>,
Joaquin Vanschoren <joaquin.vanschoren@gmail.com>
Maintainer: Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>
Diff between OpenML versions 1.6 dated 2017-08-14 and 1.7 dated 2017-10-17
OpenML-1.6/OpenML/vignettes/openml-cheatsheet.pdf |only OpenML-1.7/OpenML/DESCRIPTION | 18 ++--- OpenML-1.7/OpenML/MD5 | 59 +++++++++-------- OpenML-1.7/OpenML/NAMESPACE | 2 OpenML-1.7/OpenML/NEWS | 6 + OpenML-1.7/OpenML/R/chunkOMLlist.R |only OpenML-1.7/OpenML/R/download.R | 2 OpenML-1.7/OpenML/R/getOMLStudy.R | 30 ++++---- OpenML-1.7/OpenML/R/helpers.R | 7 +- OpenML-1.7/OpenML/R/listOMLDataSets.R | 3 OpenML-1.7/OpenML/R/listOMLFlows.R | 2 OpenML-1.7/OpenML/R/listOMLRuns.R | 4 - OpenML-1.7/OpenML/R/listOMLSetup.R |only OpenML-1.7/OpenML/R/listOMLStudies.R | 24 ++++-- OpenML-1.7/OpenML/R/listOMLTasks.R | 7 -- OpenML-1.7/OpenML/R/populateOMLCache.R | 2 OpenML-1.7/OpenML/R/zzz.R | 5 - OpenML-1.7/OpenML/build/vignette.rds |binary OpenML-1.7/OpenML/inst/CITATION | 25 ++++++- OpenML-1.7/OpenML/inst/doc/openml-cheatsheet.pdf |only OpenML-1.7/OpenML/inst/doc/openml-cheatsheet.pdf.asis |only OpenML-1.7/OpenML/inst/examples/listOMLSetup.R |only OpenML-1.7/OpenML/man/chunkOMLlist.Rd |only OpenML-1.7/OpenML/man/getOMLStudy.Rd | 6 + OpenML-1.7/OpenML/man/listOMLDataSetQualities.Rd | 5 - OpenML-1.7/OpenML/man/listOMLDataSets.Rd | 5 - OpenML-1.7/OpenML/man/listOMLEstimationProcedures.Rd | 5 - OpenML-1.7/OpenML/man/listOMLEvaluationMeasures.Rd | 5 - OpenML-1.7/OpenML/man/listOMLFlows.Rd | 6 + OpenML-1.7/OpenML/man/listOMLRuns.Rd | 6 + OpenML-1.7/OpenML/man/listOMLSetup.Rd |only OpenML-1.7/OpenML/man/listOMLStudies.Rd | 10 ++ OpenML-1.7/OpenML/man/listOMLTaskTypes.Rd | 6 + OpenML-1.7/OpenML/man/listOMLTasks.Rd | 5 - OpenML-1.7/OpenML/vignettes/openml-cheatsheet.pdf.asis |only 35 files changed, 157 insertions(+), 98 deletions(-)
Title: Multivariate Ordinal Regression Models
Description: A flexible framework for fitting multivariate
ordinal regression models with composite likelihood methods.
Author: Rainer Hirk [aut, cre],
Kurt Hornik [aut],
Laura Vana [aut],
Alan Genz [ctb] (Fortran Code)
Maintainer: Rainer Hirk <rhirk@wu.ac.at>
Diff between mvord versions 0.0.1 dated 2017-09-07 and 0.1.0 dated 2017-10-17
mvord-0.0.1/mvord/R/multord_fit.R |only mvord-0.0.1/mvord/data/data_cr_multord.rda |only mvord-0.0.1/mvord/data/data_cr_multord2.rda |only mvord-0.0.1/mvord/data/data_multord.rda |only mvord-0.0.1/mvord/data/data_multord2.rda |only mvord-0.0.1/mvord/data/data_multord_panel.rda |only mvord-0.0.1/mvord/man/coef.multord.Rd |only mvord-0.0.1/mvord/man/data_cr_multord.Rd |only mvord-0.0.1/mvord/man/data_cr_multord2.Rd |only mvord-0.0.1/mvord/man/data_multord.Rd |only mvord-0.0.1/mvord/man/data_multord2.Rd |only mvord-0.0.1/mvord/man/data_multord_panel.Rd |only mvord-0.0.1/mvord/man/multord.Rd |only mvord-0.0.1/mvord/man/multord2.Rd |only mvord-0.0.1/mvord/man/print.multord.Rd |only mvord-0.0.1/mvord/man/summary.multord.Rd |only mvord-0.0.1/mvord/tests/check_multord_data.R |only mvord-0.0.1/mvord/tests/check_multord_errors.R |only mvord-0.1.0/mvord/DESCRIPTION | 10 mvord-0.1.0/mvord/MD5 | 93 mvord-0.1.0/mvord/NAMESPACE | 30 mvord-0.1.0/mvord/NEWS |only mvord-0.1.0/mvord/R/mvord.R | 668 +++---- mvord-0.1.0/mvord/R/mvord_fit.R |only mvord-0.1.0/mvord/R/predict.R |only mvord-0.1.0/mvord/R/se.R | 332 +-- mvord-0.1.0/mvord/R/utilities.R | 289 +-- mvord-0.1.0/mvord/data/data_cr_mvord.rda |only mvord-0.1.0/mvord/data/data_cr_mvord2.rda |only mvord-0.1.0/mvord/data/data_cr_panel.rda |binary mvord-0.1.0/mvord/data/data_mvord.rda |only mvord-0.1.0/mvord/data/data_mvord2.rda |only mvord-0.1.0/mvord/data/data_mvord_panel.rda |only mvord-0.1.0/mvord/data/datalist | 10 mvord-0.1.0/mvord/inst/doc/vignette_mvord.R | 466 ++-- mvord-0.1.0/mvord/inst/doc/vignette_mvord.Rnw | 2075 +++++++++++----------- mvord-0.1.0/mvord/inst/doc/vignette_mvord.pdf |binary mvord-0.1.0/mvord/man/claic.Rd | 8 mvord-0.1.0/mvord/man/clbic.Rd | 8 mvord-0.1.0/mvord/man/coef.mvord.Rd |only mvord-0.1.0/mvord/man/data_cr_mvord.Rd |only mvord-0.1.0/mvord/man/data_cr_mvord2.Rd |only mvord-0.1.0/mvord/man/data_cr_panel.Rd | 3 mvord-0.1.0/mvord/man/data_mvord.Rd |only mvord-0.1.0/mvord/man/data_mvord2.Rd |only mvord-0.1.0/mvord/man/data_mvord_panel.Rd |only mvord-0.1.0/mvord/man/data_toy_example.Rd | 6 mvord-0.1.0/mvord/man/error.structures.Rd | 3 mvord-0.1.0/mvord/man/get.error.struct.Rd | 10 mvord-0.1.0/mvord/man/get.prob.Rd |only mvord-0.1.0/mvord/man/logPL.Rd | 8 mvord-0.1.0/mvord/man/marginal.predict.Rd |only mvord-0.1.0/mvord/man/mvlinks.Rd |only mvord-0.1.0/mvord/man/mvord-package.Rd | 6 mvord-0.1.0/mvord/man/mvord.Rd |only mvord-0.1.0/mvord/man/mvord2.Rd |only mvord-0.1.0/mvord/man/predict.mvord.Rd |only mvord-0.1.0/mvord/man/print.mvord.Rd |only mvord-0.1.0/mvord/man/summary.mvord.Rd |only mvord-0.1.0/mvord/man/thresholds.Rd | 8 mvord-0.1.0/mvord/tests/check_getInd.R | 55 mvord-0.1.0/mvord/tests/check_mvord_data.R |only mvord-0.1.0/mvord/tests/check_mvord_errors.R |only mvord-0.1.0/mvord/tests/check_toy_example.R |only mvord-0.1.0/mvord/tests/check_transf_thresholds.R | 111 + mvord-0.1.0/mvord/vignettes/mvord.bib | 297 +-- mvord-0.1.0/mvord/vignettes/res_AR1_probit.rda |binary mvord-0.1.0/mvord/vignettes/res_cor_logit.rda |binary mvord-0.1.0/mvord/vignettes/vignette_mvord.Rnw | 2075 +++++++++++----------- 69 files changed, 3434 insertions(+), 3137 deletions(-)
Title: Distance-Based Statistics
Description: Prediction methods where explanatory information is coded as a matrix of distances between individuals. Distances can either be directly input as a distances matrix, a squared distances matrix, an inner-products matrix or computed from observed predictors.
Author: Boj, Eva <evaboj@ub.edu>, Caballe, Adria <adria.caballe@upc.edu>, Delicado, Pedro <pedro.delicado@upc.edu> and Fortiana, Josep <fortiana@ub.edu>.
Maintainer: Josep Fortiana <fortiana@ub.edu>
Diff between dbstats versions 1.0.4 dated 2014-12-10 and 1.0.5 dated 2017-10-17
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 7 +++++++ NEWS | 6 ++++++ R/Hwyhat.r | 23 ++++++++++------------- R/dbglm_iteration.r | 4 ++-- R/dblm.r | 10 +++++----- 7 files changed, 40 insertions(+), 30 deletions(-)
Title: Quantify the Relationship Between Development Rate and
Temperature in Ectotherms
Description: A set of functions to quantify the relationship between development
rate and temperature. The package comprises a set of models and estimated parameters
borrowed from a literature review in ectotherms (mostly arthropods).
Author: Francois Rebaudo [aut, cre],
Quentin Struelens [aut]
Maintainer: Francois Rebaudo <francois.rebaudo@ird.fr>
Diff between devRate versions 0.1.3 dated 2017-08-07 and 0.1.4 dated 2017-10-17
DESCRIPTION | 9 MD5 | 129 ++-- NEWS.md | 5 R/data.R | 8 R/devRate.R | 2 R/devRate_find.R | 65 +- R/devRate_info.R | 2 R/devRate_map.R | 2 R/devRate_nls.R | 31 - R/devRate_pheno.R | 2 R/devRate_phenoBDD.R | 4 R/devRate_plot.R | 4 build/vignette.rds |binary data/analytis_77.RData |binary data/bayoh_03.RData |binary data/beta_95.RData |binary data/bieri1_83.RData |binary data/briere1_99.RData |binary data/briere2_99.RData |binary data/campbell_74.RData |binary data/damos_08.RData |binary data/damos_11.RData |binary data/davidson_44.RData |binary data/devRateEqList.RData |binary data/harcourtYee_82.RData |binary data/hilbertLogan_83.RData |binary data/janisch_32.RData |binary data/kontodimas_04.RData |binary data/lactin1_95.RData |binary data/lactin2_95.RData |binary data/lamb_92.RData |binary data/logan10_76.RData |binary data/logan6_76.RData |binary data/perf2_11.RData |binary data/poly2.RData |binary data/poly4.RData |binary data/ratkowsky_82.RData |binary data/regniere_12.RData |binary data/rootsq_82.RData |binary data/schoolfieldHigh_81.RData |binary data/schoolfieldLow_81.RData |binary data/schoolfield_81.RData |binary data/sharpeDeMichele_77.RData |binary data/shi_11.RData |binary data/stinner_74.RData |binary data/taylor_81.RData |binary data/wagner_88.RData |binary data/wang_82.RData |binary data/wangengel_98.RData |binary inst/doc/example_tropical.R |only inst/doc/example_tropical.Rmd | 587 +++++++++---------- inst/doc/example_tropical.html | 1209 ++++++++++++++++++++++++++++++----------- man/devRate.Rd | 2 man/devRateFind.Rd | 3 man/devRateIBM.Rd | 2 man/devRateIBMdataBase.Rd | 6 man/devRateMap.Rd | 2 man/devRateModel.Rd | 18 man/devRatePlot.Rd | 4 man/devRatePlotInfo.Rd | 2 man/devRatePrint.Rd | 3 man/schoolfieldHigh_81.Rd | 2 man/schoolfieldLow_81.Rd | 2 man/schoolfield_81.Rd | 2 man/taylor_81.Rd | 1 vignettes/example_tropical.Rmd | 587 +++++++++---------- 66 files changed, 1629 insertions(+), 1066 deletions(-)
Title: Regularized Simultaneous Component Based Data Integration
Description: It performs regularized simultaneous component based data
integration for multiblock data.
Author: Zhengguo Gu [aut, cre],
Katrijn Van Deun [aut]
Maintainer: Zhengguo Gu <z.gu@uvt.nl>
Diff between RegularizedSCA versions 0.4.2 dated 2017-06-25 and 0.5.0 dated 2017-10-17
DESCRIPTION | 6 - MD5 | 50 +++++++++++----- NAMESPACE | 9 ++ R/DISCOsca.R | 1 R/VAF.R | 1 R/cv_sparseSCA.R | 125 ++++++++++------------------------------- R/cv_structuredSCA.R | 29 ++++++++- R/mySTD.R | 2 R/plot.CVsparseSCA.R |only R/plot.CVstructuredSCA.R |only R/sparseSCA.R | 1 R/structuredSCA.R | 1 R/summary.CVsparseSCA.R |only R/summary.CVstructuredSCA.R |only R/summary.DISCOsca.R |only R/summary.VAF.R |only R/summary.sparseSCA.R |only R/summary.structuredSCA.R |only R/summary.undoS.R |only R/undoShrinkage.R | 1 README.md | 8 +- build/vignette.rds |binary inst/doc/RSCA-vignette.html | 4 - man/cv_sparseSCA.Rd | 13 +--- man/cv_structuredSCA.Rd | 4 + man/plot.CVsparseSCA.Rd |only man/plot.CVstructuredSCA.Rd |only man/summary.CVsparseSCA.Rd |only man/summary.CVstructuredSCA.Rd |only man/summary.DISCOsca.Rd |only man/summary.VAF.Rd |only man/summary.sparseSCA.Rd |only man/summary.structuredSCA.Rd |only man/summary.undoS.Rd |only vignettes/NEWS.md | 15 ++++ 35 files changed, 142 insertions(+), 128 deletions(-)
More information about RegularizedSCA at CRAN
Permanent link
Title: k-Prototypes Clustering for Mixed Variable-Type Data
Description: Functions to perform k-prototypes partitioning clustering for
mixed variable-type data according to Z.Huang (1998): Extensions to the k-Means
Algorithm for Clustering Large Data Sets with Categorical Variables, Data Mining
and Knowledge Discovery 2, 283-304, <DOI:10.1023/A:1009769707641>.
Author: Gero Szepannek
Maintainer: Gero Szepannek <gero.szepannek@web.de>
Diff between clustMixType versions 0.1-28 dated 2017-09-04 and 0.1-29 dated 2017-10-17
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/kprototypes.R | 52 +++++++++++++++++++++++++++++++++++++++++++++++----- man/clprofiles.Rd | 6 +++--- 4 files changed, 57 insertions(+), 15 deletions(-)
Title: Credit Risk Scorecard
Description: Makes the development of credit risk scorecard easily and efficiently by providing functions such as information value, variable filter, optimal woe binning, scorecard scaling and performance evaluation etc. The references including:
1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard: Development and Implementation Using SAS.
2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards. Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie
Maintainer: Shichen Xie <xie@shichen.name>
Diff between scorecard versions 0.1.0 dated 2017-09-16 and 0.1.1 dated 2017-10-17
DESCRIPTION | 15 ++++--- MD5 | 34 +++++++-------- NEWS.md | 5 ++ R/iv.R | 37 +++++++++++------ R/perf.R | 75 +++++++++++++++++++---------------- R/scorecard.R | 52 +++++++++++++----------- R/var_filter.R | 29 +++++++------ R/woebin.R | 109 +++++++++++++++++++++++++++++++-------------------- README.md | 56 ++++++++++++++++++++++++-- man/iv.Rd | 8 +-- man/perf_plot.Rd | 9 +--- man/perf_psi.Rd | 23 +++++----- man/scorecard.Rd | 18 +++----- man/scorecard_ply.Rd | 16 +++---- man/var_filter.Rd | 12 ++--- man/woebin.Rd | 32 +++++++------- man/woebin_plot.Rd | 19 ++++---- man/woebin_ply.Rd | 17 ++++++- 18 files changed, 342 insertions(+), 224 deletions(-)
Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction
risk of species according to the IUCN (International Union for Conservation of
Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between red versions 1.2.1 dated 2017-10-06 and 1.3.0 dated 2017-10-17
DESCRIPTION | 8 - MD5 | 17 +- NAMESPACE | 1 R/red.R | 364 +++++++++++++++++++++++------------------------------ man/aoo.Rd | 4 man/eoo.Rd | 4 man/rli.Rd | 7 - man/rli.map.Rd |only man/rli.multi.Rd | 5 man/rli.sampled.Rd | 4 10 files changed, 191 insertions(+), 223 deletions(-)
Title: Reconstruction of Daily Data - Precipitation
Description: Computes quality control for daily precipitation datasets,
reconstructs the original series by estimating precipitation in missing values,
creates new series in a specified pair of coordinates and creates grids.
Author: Roberto Serrano-Notivoli
Maintainer: Roberto Serrano-Notivoli <rs@unizar.es>
Diff between reddPrec versions 0.3 dated 2017-01-30 and 0.4.0 dated 2017-10-17
DESCRIPTION | 16 +++++++++------- MD5 | 10 +++++----- NAMESPACE | 1 + R/gapFilling.R | 50 +++++++++++++++++++++++++------------------------- R/gridPcp.R | 21 ++++++++++++--------- R/qcPrec.R | 11 +++++++---- 6 files changed, 59 insertions(+), 50 deletions(-)