Title: Structured Interface to 'Julia'
Description: A 'Julia' interface structured according to the general
form described in package 'XR' and in the book "Extending R".
Author: John M. Chambers
Maintainer: John Chambers <jmc@r-project.org>
Diff between XRJulia versions 0.7 dated 2016-09-02 and 0.7.6 dated 2017-10-20
DESCRIPTION | 15 ++++++------ MD5 | 36 +++++++++++++++-------------- R/RJuliaConnect.R | 53 ++++++++++++++++++++++++++++++++++---------- README.md | 11 ++++++--- inst/julia/RJuliaJSON.jl | 18 +++++++++++++- inst/julia/XRJulia.jl | 50 +++++++++++++---------------------------- inst/julia/addJSON.jl |only inst/julia/testJSON.jl |only inst/tests/basicEval.R | 4 +-- inst/tests/testSVD.R | 9 ++++--- man/JuliaInterface-class.Rd | 37 ++++++++++++++++++++++-------- man/JuliaObject-class.Rd | 4 +-- man/RJulia.Rd | 3 -- man/XRjulia-package.Rd | 9 ++++--- man/findJulia.Rd | 15 +++++++++++- man/from_Julia-class.Rd | 2 - man/functions.Rd | 23 +++++++++---------- man/juliaClassDef.Rd | 7 ++--- man/proxyJuliaObjects.Rd | 3 -- man/setJuliaClass.Rd | 7 ++--- 20 files changed, 185 insertions(+), 121 deletions(-)
Title: Username, Full Name, Email Address, 'GitHub' Username of the
Current User
Description: Look up the username and full name of the current user,
the current user's email address and 'GitHub' username,
using various sources of system and configuration information.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between whoami versions 1.1.1 dated 2015-07-12 and 1.1.2 dated 2017-10-20
DESCRIPTION | 18 +++++++++------- LICENSE | 4 +-- MD5 | 30 +++++++++++++-------------- NAMESPACE | 2 - R/whoami.R | 2 - inst/NEWS.md | 9 +++++++- inst/README.md | 7 +++--- man/email_address.Rd | 7 ++---- man/fullname.Rd | 7 ++---- man/gh_username.Rd | 7 ++---- man/username.Rd | 7 ++---- man/whoami.Rd | 7 ++---- tests/testthat/test-email.R | 7 +----- tests/testthat/test-fallbacks.R | 42 +++++++++----------------------------- tests/testthat/test-fullname.R | 26 ++++++++++------------- tests/testthat/test-gh-username.R | 12 ++-------- 16 files changed, 84 insertions(+), 110 deletions(-)
Title: Chemical Information from the Web
Description: Chemical information from around the web. This package interacts
with a suite of web APIs for chemical information.
Author: Eduard Szöcs [aut, cre],
Daniel Muench [ctb],
Johannes Ranke [ctb],
Eric Scott [ctb]
Maintainer: Eduard Szöcs <eduardszoecs@gmail.com>
Diff between webchem versions 0.2 dated 2017-03-19 and 0.3.0 dated 2017-10-20
DESCRIPTION | 10 +- MD5 | 48 +++++----- NAMESPACE | 2 NEWS | 23 +++++ R/chemid.R | 4 R/chemspider.R | 105 +++++++++++++++++------ R/cts.R | 8 - R/pubchem.R | 15 ++- R/wikidata.R | 8 + data/aw_idx.rda |binary man/cs_compinfo.Rd | 1 man/cs_csid_mol.Rd | 1 man/cs_extcompinfo.Rd | 1 man/cs_inchikey_csid.Rd | 1 man/pc_synonyms.Rd | 10 +- man/wd_ident.Rd | 3 tests/testthat.R | 6 - tests/testthat/test-alanwood.R | 2 tests/testthat/test-chemspider.R | 17 +++ tests/testthat/test-cir.R | 3 tests/testthat/test-cts.R | 2 tests/testthat/test-etox.R | 172 +++++++++++++++++++-------------------- tests/testthat/test-utils.R | 14 +-- tests/testthat/test-wikidata.R | 4 tests/testthat/test_fn.R | 2 25 files changed, 287 insertions(+), 175 deletions(-)
Title: Acquisition and Processing of NASA Soil Moisture Active-Passive
(SMAP) Data
Description: Facilitates programmatic access to NASA Soil Moisture Active
Passive (SMAP) data with R. It includes functions to search for, acquire,
and extract SMAP data.
Author: Maxwell Joseph [aut, cre],
Matthew Oakley [aut],
Zachary Schira [aut]
Maintainer: Maxwell Joseph <maxwell.b.joseph@colorado.edu>
Diff between smapr versions 0.1.0 dated 2017-02-21 and 0.1.1 dated 2017-10-20
DESCRIPTION | 12 ++++----- MD5 | 30 ++++++++++++------------ NEWS.md | 7 +++++ R/download_smap.R | 19 ++++++++++++++- R/extract_smap.R | 2 - R/find_smap.R | 35 +++++++++++++++++++++++----- R/list_smap.R | 2 - README.md | 10 ++++---- inst/img/unnamed-chunk-8-1.png |binary man/download_smap.Rd | 2 - man/extract_smap.Rd | 2 - man/find_smap.Rd | 4 +-- man/list_smap.Rd | 2 - tests/testthat/test-download_smap.R | 44 ++++++++++++++++++++++++++++++++++-- tests/testthat/test-extract_smap.R | 33 ++++++++++++++++++++++----- tests/testthat/test-find_smap.R | 27 ++++++++++++++++++---- 16 files changed, 179 insertions(+), 52 deletions(-)
Title: 'ROI' Plug-in 'GLPK'
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package by registering
the free 'GLPK' solver. It allows for solving mixed integer linear programming ('MILP')
problems as well as all variants/combinations of 'LP', 'IP'.
Author: Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI.plugin.glpk versions 0.2-5 dated 2017-05-18 and 0.3-0 dated 2017-10-20
ROI.plugin.glpk-0.2-5/ROI.plugin.glpk/man |only ROI.plugin.glpk-0.3-0/ROI.plugin.glpk/DESCRIPTION | 17 ++--- ROI.plugin.glpk-0.3-0/ROI.plugin.glpk/MD5 | 11 +-- ROI.plugin.glpk-0.3-0/ROI.plugin.glpk/R/plugin.R | 34 ++++++++++ ROI.plugin.glpk-0.3-0/ROI.plugin.glpk/R/zzz.R | 18 +++-- ROI.plugin.glpk-0.3-0/ROI.plugin.glpk/tests/test_glpk.R | 1 ROI.plugin.glpk-0.3-0/ROI.plugin.glpk/tests/test_glpk.Rout.save | 11 ++- 7 files changed, 69 insertions(+), 23 deletions(-)
More information about ROI.plugin.glpk at CRAN
Permanent link
Title: ROI Plug-in CPLEX
Description: Enhances the R Optimization Infrastructure (ROI) package by registering
the 'CPLEX' commercial solver. It allows for solving mixed integer quadratically
constrained programming (MIQPQC) problems as well as all
variants/combinations of LP, QP, QCP, IP.
Author: Stefan Theussl [aut, cre],
Florian Schwendinger [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI.plugin.cplex versions 0.2-5 dated 2017-05-17 and 0.3-0 dated 2017-10-20
ROI.plugin.cplex-0.2-5/ROI.plugin.cplex/man |only ROI.plugin.cplex-0.3-0/ROI.plugin.cplex/DESCRIPTION | 9 ++++----- ROI.plugin.cplex-0.3-0/ROI.plugin.cplex/MD5 | 5 ++--- ROI.plugin.cplex-0.3-0/ROI.plugin.cplex/R/plugin.R | 4 ++-- 4 files changed, 8 insertions(+), 10 deletions(-)
More information about ROI.plugin.cplex at CRAN
Permanent link
Title: R Optimization Infrastructure
Description: The R Optimization Infrastructure ('ROI') is a
sophisticated framework for handling optimization problems in R.
Author: Kurt Hornik [aut],
David Meyer [aut],
Florian Schwendinger [aut],
Stefan Theussl [aut, cre],
Diethelm Wuertz [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI versions 0.2-6 dated 2017-05-22 and 0.3-0 dated 2017-10-20
DESCRIPTION | 7 - MD5 | 62 +++++----- NAMESPACE | 7 + R/OP.R | 35 ++--- R/bounds.R | 148 +++++++++++++++++++++++-- R/constraints.R | 22 ++- R/io_tools.R | 77 +++++++++---- R/objective.R | 14 +- R/plugin.R | 29 ++++ R/reformulations.R | 17 -- R/roi.R | 37 +++--- R/solution.R | 38 ++++-- R/types.R | 13 +- R/utilities.R | 6 + R/zzz.R | 57 ++++++--- man/OP.Rd | 10 - man/ROI_available_solvers.Rd | 8 - man/ROI_plugin_add_status_code_to_db.Rd | 3 man/ROI_plugin_build_equality_constraints.Rd | 3 man/ROI_plugin_build_inequality_constraints.Rd | 3 man/ROI_plugin_canonicalize_solution.Rd | 3 man/ROI_plugin_get_solver_name.Rd | 3 man/ROI_plugin_make_signature.Rd | 3 man/ROI_plugin_register_reader_writer.Rd | 6 - man/ROI_plugin_register_solver_control.Rd | 3 man/ROI_plugin_register_solver_method.Rd | 3 man/ROI_plugin_solution.Rd | 18 ++- man/ROI_registered_solver_control.Rd |only man/ROI_solve.Rd | 13 +- man/V_bound.Rd | 11 + man/equal.Rd | 3 man/is.default_bound.Rd |only man/solution.Rd | 9 + 33 files changed, 477 insertions(+), 194 deletions(-)
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre],
Milan Bouchet-Valat [aut],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ctb],
Kosar Karimi Pour [ctb],
G. Jay Kerns [ctb],
Renaud Lancelot [ctb],
Matthieu Lesnoff [ctb],
Uwe Ligges [ctb],
Samir Messad [ctb],
Martin Maechler [ctb],
Robert Muenchen [ctb],
Duncan Murdoch [ctb],
Erich Neuwirth [ctb],
Dan Putler [ctb],
Brian Ripley [ctb],
Miroslav Ristic [ctb],
Peter Wolf [ctb],
Kevin Wright [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between Rcmdr versions 2.4-0 dated 2017-08-28 and 2.4-1 dated 2017-10-20
Rcmdr-2.4-0/Rcmdr/build |only Rcmdr-2.4-0/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr.R |only Rcmdr-2.4-0/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr.Rnw |only Rcmdr-2.4-1/Rcmdr/DESCRIPTION | 8 Rcmdr-2.4-1/Rcmdr/MD5 | 41 Rcmdr-2.4-1/Rcmdr/NEWS | 8 Rcmdr-2.4-1/Rcmdr/R/data-menu.R | 7 Rcmdr-2.4-1/Rcmdr/R/distributions-sample.R | 4 Rcmdr-2.4-1/Rcmdr/R/file-menu.R | 6 Rcmdr-2.4-1/Rcmdr/R/graphs-menu.R | 5 Rcmdr-2.4-1/Rcmdr/R/utilities.R | 7372 +++---- Rcmdr-2.4-1/Rcmdr/inst/etc/Thumbs.db |only Rcmdr-2.4-1/Rcmdr/inst/po/de/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.4-1/Rcmdr/inst/po/eu/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.4-1/Rcmdr/inst/po/ko/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.4-1/Rcmdr/inst/po/ro/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.4-1/Rcmdr/inst/po/zh/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.4-1/Rcmdr/man/Rcmdr-package.Rd | 4 Rcmdr-2.4-1/Rcmdr/po/R-de.po | 240 Rcmdr-2.4-1/Rcmdr/po/R-eu.po |10421 +++++----- Rcmdr-2.4-1/Rcmdr/po/R-ko.po | 331 Rcmdr-2.4-1/Rcmdr/po/R-ro.po | 109 Rcmdr-2.4-1/Rcmdr/po/R-zh.po | 803 Rcmdr-2.4-1/Rcmdr/vignettes/Thumbs.db |only 24 files changed, 10175 insertions(+), 9184 deletions(-)
Title: Design of Experiments Suite: Generate and Evaluate Optimal
Designs
Description: Generates and evaluates D, I, A, Alias, E, T, and G optimal designs. Supports generation and evaluation of split/split-split/.../N-split plot designs. Includes parametric and Monte Carlo power evaluation functions, and supports calculating power for censored responses. Provides a framework to evaluate power using functions provided in other packages or written by the user. Includes a Shiny graphical user interface that displays the underlying code used to create and evaluate the design to improve ease-of-use and make analyses more reproducible.
Author: Tyler Morgan-Wall [aut, cre],
George Khoury [aut]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between skpr versions 0.39.0 dated 2017-10-15 and 0.40.1 dated 2017-10-20
DESCRIPTION | 6 MD5 | 177 - NAMESPACE | 52 NEWS | 67 R/aliasmodel.R | 78 R/anticoef_from_delta.R | 130 - R/anticoef_from_delta_surv.R | 112 R/blockingstructure.R | 66 R/calcblocksizes.R | 38 R/calcnoncentralparam.R | 30 R/calculatepower.R | 26 R/constructRunMatrix.R | 34 R/contr.simplex.R | 62 R/disallowed_combinations.R | 42 R/effectpower.R | 60 R/eval_design.R | 990 ++++---- R/eval_design_custom_mc.R | 434 +-- R/eval_design_mc.R | 1176 ++++----- R/eval_design_survival_mc.R | 642 ++--- R/extractPvalues.R | 50 R/gen_anticoef.R | 94 R/gen_binomial_anticoef.R | 54 R/gen_design.R | 1784 +++++++------- R/gen_exponential_anticoef.R | 48 R/gen_momentsmatrix.R | 160 - R/gen_poisson_anticoef.R | 48 R/genhypmatrix.R | 52 R/genparammatrix.R | 48 R/parameterpower.R | 52 R/plot_correlations.R | 194 - R/plot_fds.R | 212 - R/priorlevels.R | 34 R/quad.R | 44 R/reduceRunMatrix.R | 50 R/skpRcpp.R | 6 R/skprGUI.R | 4035 ++++++++++++++++----------------- R/skprGUIbrowser.R | 38 R/startupmessage.R | 20 README.md | 330 +- inst/COPYRIGHTS |only inst/shiny/skprGUI/server.R | 2582 ++++++++++----------- inst/shiny/skprGUI/ui.R | 1434 +++++------ man/aliasmodel.Rd | 36 man/anticoef_from_delta.Rd | 48 man/anticoef_from_delta_surv.Rd | 48 man/blockingstructure.Rd | 36 man/calcblocksizes.Rd | 40 man/calcnoncentralparam.Rd | 44 man/calculatepower.Rd | 48 man/constructRunMatrix.Rd | 38 man/contr.simplex.Rd | 44 man/disallowed_combinations.Rd | 36 man/effectpower.Rd | 52 man/eval_design.Rd | 334 +- man/eval_design_custom_mc.Rd | 216 - man/eval_design_mc.Rd | 458 +-- man/eval_design_survival_mc.Rd | 286 +- man/extractPvalues.Rd | 42 man/gen_anticoef.Rd | 36 man/gen_binomial_anticoef.Rd | 68 man/gen_design.Rd | 418 +-- man/gen_exponential_anticoef.Rd | 56 man/gen_momentsmatrix.Rd | 38 man/gen_poisson_anticoef.Rd | 56 man/genhypmatrix.Rd | 44 man/genparammatrix.Rd | 46 man/parameterpower.Rd | 48 man/plot_correlations.Rd | 86 man/plot_fds.Rd | 68 man/priorlevels.Rd | 38 man/quad.Rd | 36 man/reduceRunMatrix.Rd | 40 man/skprGUI.Rd | 42 man/skprGUIbrowser.Rd | 32 src/AOptimality.cpp | 1 src/DOptimality.cpp | 1 src/DOptimalityBlocked.cpp | 1 src/IOptimality.cpp | 1 src/calcAliasTrace.cpp | 1 src/calculateAOptimalityPseudo.cpp | 1 src/calculateDEfficiency.cpp | 1 src/covarianceMatrix.cpp | 1 src/covarianceMatrixPseudo.cpp | 1 src/genOptimalDesign.cpp | 12 src/genPseudoInverse.cpp | 2 tests/testthat.R | 6 tests/testthat/Rplots.pdf |only tests/testthat/testDeltaProcessing.R | 430 +-- tests/testthat/testExampleCode.R | 648 ++--- tests/testthat/testExtractPvalues.R | 64 tests/testthat/testPlottingFunctions.R |only 91 files changed, 9875 insertions(+), 9845 deletions(-)
Title: Metagenomics Longitudinal Differential Abundance Method
Description: Identify time intervals of differentially abundant metagenomic features in longitudinal studies <doi:10.1145/3107411.3107429>.
Author: Ahmed Metwally, Patricia Finn, Yang Dai, David Perkins
Maintainer: Ahmed Metwally <ametwa2@uic.edu>
Diff between MetaLonDA versions 1.0.4 dated 2017-07-28 and 1.0.5 dated 2017-10-20
MetaLonDA-1.0.4/MetaLonDA/build |only MetaLonDA-1.0.4/MetaLonDA/inst |only MetaLonDA-1.0.4/MetaLonDA/vignettes |only MetaLonDA-1.0.5/MetaLonDA/DESCRIPTION | 21 MetaLonDA-1.0.5/MetaLonDA/MD5 | 44 - MetaLonDA-1.0.5/MetaLonDA/NAMESPACE | 48 - MetaLonDA-1.0.5/MetaLonDA/R/CurveFitting.R | 556 ++++++++-------- MetaLonDA-1.0.5/MetaLonDA/R/Metalonda.R | 469 +++++++------ MetaLonDA-1.0.5/MetaLonDA/R/Normalization.R |only MetaLonDA-1.0.5/MetaLonDA/R/Permutation.R | 145 ++-- MetaLonDA-1.0.5/MetaLonDA/R/Visualization.R | 422 ++++++------ MetaLonDA-1.0.5/MetaLonDA/man/areaPermutation.Rd | 69 + MetaLonDA-1.0.5/MetaLonDA/man/curveFitting.Rd | 77 +- MetaLonDA-1.0.5/MetaLonDA/man/findSigInterval.Rd | 56 - MetaLonDA-1.0.5/MetaLonDA/man/intervalArea.Rd | 67 - MetaLonDA-1.0.5/MetaLonDA/man/metalonda.Rd | 115 +-- MetaLonDA-1.0.5/MetaLonDA/man/metalondaAll.Rd | 90 +- MetaLonDA-1.0.5/MetaLonDA/man/metalonda_test_data.Rd | 29 MetaLonDA-1.0.5/MetaLonDA/man/normalize.Rd |only MetaLonDA-1.0.5/MetaLonDA/man/permutation.Rd | 81 +- MetaLonDA-1.0.5/MetaLonDA/man/visualizeARHistogram.Rd | 41 - MetaLonDA-1.0.5/MetaLonDA/man/visualizeArea.Rd | 62 - MetaLonDA-1.0.5/MetaLonDA/man/visualizeFeature.Rd | 69 + MetaLonDA-1.0.5/MetaLonDA/man/visualizeFeatureSpline.Rd | 53 - MetaLonDA-1.0.5/MetaLonDA/man/visualizeTimeIntervals.Rd |only 25 files changed, 1329 insertions(+), 1185 deletions(-)
Title: Google Analytics API into R
Description: R library for interacting with the Google Analytics
Reporting API v3 and v4.
Author: Mark Edmondson [aut, cre],
Artem Klevtsov [ctb],
Johann deBoer [ctb],
David Watkins [ctb],
Olivia Brode-Roger [ctb],
Jas Sohi [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAnalyticsR versions 0.4.1 dated 2017-06-19 and 0.4.2 dated 2017-10-20
googleAnalyticsR-0.4.1/googleAnalyticsR/man/hourly_anti_sample.Rd |only googleAnalyticsR-0.4.2/googleAnalyticsR/DESCRIPTION | 28 - googleAnalyticsR-0.4.2/googleAnalyticsR/MD5 | 53 +-- googleAnalyticsR-0.4.2/googleAnalyticsR/NAMESPACE | 10 googleAnalyticsR-0.4.2/googleAnalyticsR/NEWS.md | 27 + googleAnalyticsR-0.4.2/googleAnalyticsR/R/aggregate.R | 13 googleAnalyticsR-0.4.2/googleAnalyticsR/R/anti_sample.R | 167 +--------- googleAnalyticsR-0.4.2/googleAnalyticsR/R/auth.R | 33 + googleAnalyticsR-0.4.2/googleAnalyticsR/R/bigQuery.R | 16 googleAnalyticsR-0.4.2/googleAnalyticsR/R/cache.R |only googleAnalyticsR-0.4.2/googleAnalyticsR/R/ga_v4_get.R | 7 googleAnalyticsR-0.4.2/googleAnalyticsR/R/googleAnalyticsR.R | 10 googleAnalyticsR-0.4.2/googleAnalyticsR/R/options.R | 44 ++ googleAnalyticsR-0.4.2/googleAnalyticsR/R/parse_functions.R | 47 +- googleAnalyticsR-0.4.2/googleAnalyticsR/R/pivots.R | 4 googleAnalyticsR-0.4.2/googleAnalyticsR/R/segments.R | 4 googleAnalyticsR-0.4.2/googleAnalyticsR/R/shiny-modules.R | 2 googleAnalyticsR-0.4.2/googleAnalyticsR/R/utilities.R | 3 googleAnalyticsR-0.4.2/googleAnalyticsR/data/meta.rda |binary googleAnalyticsR-0.4.2/googleAnalyticsR/inst/doc/googleAnalyticsR.Rmd | 1 googleAnalyticsR-0.4.2/googleAnalyticsR/inst/doc/googleAnalyticsR.html | 61 +-- googleAnalyticsR-0.4.2/googleAnalyticsR/inst/shiny/ga4-example/ga4_demo/ui.R | 1 googleAnalyticsR-0.4.2/googleAnalyticsR/man/expect_null_or_s3_class.Rd | 2 googleAnalyticsR-0.4.2/googleAnalyticsR/man/ga_auth.Rd | 24 + googleAnalyticsR-0.4.2/googleAnalyticsR/man/ga_cache_call.Rd |only googleAnalyticsR-0.4.2/googleAnalyticsR/man/googleAnalyticsR.Rd | 10 googleAnalyticsR-0.4.2/googleAnalyticsR/man/google_analytics_4.Rd | 2 googleAnalyticsR-0.4.2/googleAnalyticsR/man/multi_select.Rd | 2 googleAnalyticsR-0.4.2/googleAnalyticsR/vignettes/googleAnalyticsR.Rmd | 1 29 files changed, 284 insertions(+), 288 deletions(-)
More information about googleAnalyticsR at CRAN
Permanent link
Title: Create Muller Plots of Evolutionary Dynamics
Description: Create plots that combine a phylogeny and frequency dynamics.
Phylogenetic input can be a generic adjacency matrix or a tree of class "phylo".
Inspired by similar plots in publications of the labs of RE Lenski and JE
Barrick. Named for HJ Muller (who popularised such plots) and H Wickham (whose
code this package exploits).
Author: Robert Noble [aut, cre] (0000-0002-8057-4252)
Maintainer: Robert Noble <robjohnnoble@gmail.com>
Diff between ggmuller versions 0.2.2 dated 2017-09-11 and 0.3 dated 2017-10-20
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- R/MullerPlot.R | 26 ++++++++++++++++---------- README.md | 18 ++++++++++-------- inst/doc/ggmuller.R | 2 +- inst/doc/ggmuller.Rmd | 4 ++-- inst/doc/ggmuller.html | 4 ++-- man/Muller_plot.Rd | 2 +- man/get_Muller_df.Rd | 14 ++++++++------ vignettes/ggmuller.Rmd | 4 ++-- 10 files changed, 57 insertions(+), 47 deletions(-)
Title: Bayesian Regression Models using Stan
Description: Fit Bayesian generalized (non-)linear multilevel models
using Stan for full Bayesian inference. A wide range of distributions
and link functions are supported, allowing users to fit -- among others --
linear, robust linear, count data, survival, response times, ordinal,
zero-inflated, hurdle, and even self-defined mixture models all in a
multilevel context. Further modeling options include non-linear and
smooth terms, auto-correlation structures, censored data, meta-analytic
standard errors, and quite a few more. In addition, all parameters of the
response distribution can be predicted in order to perform distributional
regression. Prior specifications are flexible and explicitly encourage
users to apply prior distributions that actually reflect their beliefs.
Model fit can easily be assessed and compared with posterior predictive
checks and leave-one-out cross-validation.
Author: Paul-Christian Bürkner [aut, cre]
Maintainer: Paul-Christian Bürkner <paul.buerkner@gmail.com>
Diff between brms versions 1.10.0 dated 2017-09-09 and 1.10.2 dated 2017-10-20
DESCRIPTION | 8 MD5 | 61 +++--- R/brmsfit-helpers.R | 135 +------------- R/brmsfit-methods.R | 32 +-- R/data-predictor.R | 2 R/extract_draws.R | 4 R/families.R | 4 R/generics.R | 22 ++ R/linear_predictor.R | 5 R/loo-helpers.R | 98 ++++++++-- R/make_stancode.R | 2 R/marginal_effects-helpers.R | 12 + R/priors.R | 32 +++ R/rename.R | 333 +---------------------------------- R/restructure.R |only R/stan-helpers.R | 24 +- R/sysdata.rda |binary R/validate.R | 27 ++ inst/NEWS.Rd | 31 +++ inst/doc/brms_distreg.html | 28 +- inst/doc/brms_families.html | 4 inst/doc/brms_monotonic.html | 4 inst/doc/brms_multilevel.pdf |binary inst/doc/brms_nonlinear.html | 4 inst/doc/brms_overview.pdf |binary inst/doc/brms_phylogenetics.html | 4 man/kfold.Rd | 30 ++- man/restructure.Rd | 2 tests/testthat/tests.brm.R | 2 tests/testthat/tests.make_stancode.R | 27 ++ tests/testthat/tests.plots.R | 4 tests/testthat/tests.rename.R | 7 32 files changed, 373 insertions(+), 575 deletions(-)
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College
Scorecard data using the public API
<https://collegescorecard.ed.gov/data/documentation/>. It is based on
the 'dplyr' model of piped commands to select and filter data in a
single chained function call. An API key from the U.S. Department of
Education is required.
Author: Benjamin Skinner [aut, cre]
Maintainer: Benjamin Skinner <btskinner@virginia.edu>
Diff between rscorecard versions 0.4.0 dated 2017-09-28 and 0.5.0 dated 2017-10-20
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 5 ++--- NEWS.md | 7 +++++++ R/get.R | 37 +++++++++++++++++++++++++++++++++---- R/utility_functions.R | 7 ++----- build/vignette.rds |binary inst/doc/introduction.html | 36 ++++++++++++++++++------------------ man/reexports.Rd | 8 -------- man/sc_get.Rd | 10 +++++++++- 10 files changed, 84 insertions(+), 52 deletions(-)
Title: Lightweight Portable Message Queue Using 'SQLite'
Description: Temporary and permanent message queues for R. Built on top of
'SQLite' databases. 'SQLite' provides locking, and makes it possible
to detect crashed consumers. Crashed jobs can be automatically marked
as "failed", or put in the queue again, potentially a limited number of times.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between liteq versions 1.0.0 dated 2017-01-27 and 1.0.1 dated 2017-10-20
DESCRIPTION | 14 +++++++------- MD5 | 23 ++++++++++++----------- NEWS.md | 5 +++++ R/db.R | 34 ++++++++++++++++++++-------------- R/package.R | 4 +++- README.md | 8 ++++---- inst/README.Rmd | 8 ++++---- inst/README.md | 8 ++++---- inst/examples |only man/liteq.Rd | 4 +++- tests/testthat.R | 9 ++++++++- tests/testthat/test-crashes.R | 2 +- tests/testthat/test-db.R | 6 +++--- 13 files changed, 74 insertions(+), 51 deletions(-)
Title: Simply Create LaTeX and HTML Tables
Description: Creates HTML and LaTeX tables. Provides similar
functionality to 'xtable', but does more, with a simpler interface.
Author: David Hugh-Jones
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between huxtable versions 1.0.0 dated 2017-10-07 and 1.1.0 dated 2017-10-20
DESCRIPTION | 6 MD5 | 53 +++--- NEWS.md | 12 + R/LaTeX.R | 114 ++++++------- R/attributes.R | 43 +++-- R/dplyr.R | 5 R/flextable.R | 6 R/huxreg.R | 32 +-- R/huxtable.R | 4 R/screen.R | 9 - R/utils.R | 54 ++---- inst/doc/design-principles.html | 6 inst/doc/huxreg.html | 250 +++++++++++++++--------------- inst/doc/huxtable.R | 10 - inst/doc/huxtable.Rmd | 25 +-- inst/doc/huxtable.html | 107 ++++++------ man/dplyr-verbs.Rd | 7 man/huxreg.Rd | 11 - man/pad_decimal.Rd | 2 man/set_outer_borders.Rd | 13 - tests/testthat/table-tester-2.Rmd |only tests/testthat/test-attributes.R | 17 +- tests/testthat/test-dplyr.R | 13 + tests/testthat/test-huxreg.R | 9 + tests/testthat/test-object-manipulation.R | 2 tests/testthat/test-set-interface.R | 29 +++ tests/testthat/test-with-pandoc.R | 17 +- vignettes/huxtable.Rmd | 25 +-- 28 files changed, 476 insertions(+), 405 deletions(-)
Title: Robust Geostatistical Analysis of Spatial Data
Description: Provides functions for efficiently fitting linear models with
spatially correlated errors by robust and Gaussian (Restricted)
Maximum Likelihood and for computing robust and customary point
and block external-drift Kriging predictions, along with utility
functions for variogram modelling in ad hoc geostatistical analyses,
model building, model evaluation by cross-validation and for
unbiased back-transformation of Kriging predictions of
log-transformed data.
Author: Andreas Papritz [cre, aut],
Cornelia Schwierz [ctb]
Maintainer: Andreas Papritz <andreas.papritz@env.ethz.ch>
Diff between georob versions 0.3-4 dated 2017-05-09 and 0.3-5 dated 2017-10-20
ChangeLog | 8 ++++ DESCRIPTION | 8 ++-- MD5 | 32 ++++++++--------- NAMESPACE | 6 ++- NEWS | 5 +- R/georob.S3methods.R | 78 +++++++++++++++++++++++++++++++++++++++++- R/georob.private.functions.R | 8 ++-- build/vignette.rds |binary inst/doc/georob_vignette.R | 2 - inst/doc/georob_vignette.Rnw | 14 ++++--- inst/doc/georob_vignette.pdf |binary man/S3methods.georob.Rd | 25 ++++++++----- man/georob-package.Rd | 2 - man/georob.Rd | 6 +-- man/lgnpp.Rd | 2 - man/predict.georob.Rd | 2 - vignettes/georob_vignette.Rnw | 14 ++++--- 17 files changed, 157 insertions(+), 55 deletions(-)
Title: Statistical Disclosure Control Methods for Anonymization of
Microdata and Risk Estimation
Description: Data from statistical agencies and other institutions are mostly
confidential. This package can be used for the generation of anonymized
(micro)data, i.e. for the creation of public- and scientific-use files. In
addition, various risk estimation methods are included. Note that the package
includes a graphical user interface that allows to use various methods of this
package.
Author: Matthias Templ, Alexander Kowarik, Bernhard Meindl
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between sdcMicro versions 5.0.3 dated 2017-08-10 and 5.0.4 dated 2017-10-20
sdcMicro-5.0.3/sdcMicro/inst/shiny/sdcApp/www/bootstrap.css |only sdcMicro-5.0.4/sdcMicro/DESCRIPTION | 17 sdcMicro-5.0.4/sdcMicro/MD5 | 126 - sdcMicro-5.0.4/sdcMicro/NAMESPACE | 3 sdcMicro-5.0.4/sdcMicro/NEWS | 9 sdcMicro-5.0.4/sdcMicro/R/RcppExports.R | 8 sdcMicro-5.0.4/sdcMicro/R/dUtility.R | 6 sdcMicro-5.0.4/sdcMicro/R/measure_risk.R | 18 sdcMicro-5.0.4/sdcMicro/R/muargus_compatibility_functions.R |only sdcMicro-5.0.4/sdcMicro/R/report.R | 13 sdcMicro-5.0.4/sdcMicro/R/riskyCells.R |only sdcMicro-5.0.4/sdcMicro/R/sdcApp.R | 20 sdcMicro-5.0.4/sdcMicro/build/partial.rdb |binary sdcMicro-5.0.4/sdcMicro/build/vignette.rds |binary sdcMicro-5.0.4/sdcMicro/data/CASCrefmicrodata.rda |binary sdcMicro-5.0.4/sdcMicro/data/EIA.rda |binary sdcMicro-5.0.4/sdcMicro/data/Tarragona.rda |binary sdcMicro-5.0.4/sdcMicro/data/casc1.rda |binary sdcMicro-5.0.4/sdcMicro/data/francdat.rda |binary sdcMicro-5.0.4/sdcMicro/data/free1.rda |binary sdcMicro-5.0.4/sdcMicro/data/microData.rda |binary sdcMicro-5.0.4/sdcMicro/data/testdata.RData |binary sdcMicro-5.0.4/sdcMicro/data/testdata2.RData |binary sdcMicro-5.0.4/sdcMicro/inst/doc/sdcApp.html | 886 ++++++---- sdcMicro-5.0.4/sdcMicro/inst/doc/sdc_guidelines.pdf |binary sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_about.R | 86 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_anonymize.R | 74 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_categorical.R | 147 - sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_continuous.R | 124 - sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_export_data.R | 48 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_import_data.R | 75 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_modify_data.R | 226 +- sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_results.R | 60 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_results_categorical.R | 201 +- sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_results_numerical.R | 55 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_script.R | 50 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_setup_sdc.R | 261 +- sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_sidebar_problemInfo.R | 14 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/controllers/ui_undo.R | 42 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/global.R | 13 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/server.R | 39 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/ui.R | 21 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/bootswatch_flatly.css | 41 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/bootswatch_journal.css | 41 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/bootswatch_yeti.css | 45 sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-color-vars.scss |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-blocks.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-bootstrap.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-charts.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-fixednavigation.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-fontsizes.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-grid-pagination.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-grid.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-header.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-maincolumn.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-misc.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-shell.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-sidebar.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-sidebar.scss |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-tables.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-extra-toast.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-root.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn-screen-anonymize.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn.css |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn.css.map |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/ihsn.scss |only sdcMicro-5.0.4/sdcMicro/inst/shiny/sdcApp/www/js/ihsn-style.js |only sdcMicro-5.0.4/sdcMicro/man/argus_microaggregation.Rd |only sdcMicro-5.0.4/sdcMicro/man/argus_rankswap.Rd |only sdcMicro-5.0.4/sdcMicro/man/dUtility.Rd | 4 sdcMicro-5.0.4/sdcMicro/man/measure_risk.Rd | 16 sdcMicro-5.0.4/sdcMicro/man/riskyCells.Rd |only sdcMicro-5.0.4/sdcMicro/man/sdcApp.Rd | 6 sdcMicro-5.0.4/sdcMicro/src/RankSwap.h |only sdcMicro-5.0.4/sdcMicro/src/RcppExports.cpp | 25 sdcMicro-5.0.4/sdcMicro/src/init.c | 4 sdcMicro-5.0.4/sdcMicro/src/microAggregation.cpp |only sdcMicro-5.0.4/sdcMicro/src/microAggregation.h |only sdcMicro-5.0.4/sdcMicro/src/muargus_microaggregation.cpp |only sdcMicro-5.0.4/sdcMicro/src/muargus_rankswap.cpp |only sdcMicro-5.0.4/sdcMicro/src/rankSwap.cpp |only 81 files changed, 1798 insertions(+), 1026 deletions(-)
Title: Ordinal Forests: Prediction and Variable Ranking with Ordinal
Target Variables
Description: The ordinal forest (OF) method allows ordinal regression with high-dimensional
and low-dimensional data. After having constructed an OF prediction rule using a training dataset,
it can be used to predict the values of the ordinal target variable for new observations.
Moreover, by means of the (permutation-based) variable importance measure of OF, it is also
possible to rank the covariates with respect to their importances in the prediction of the
values of the ordinal target variable.
OF is presented in Hornung (2017).
The main functions of the package are: ordfor() (construction of OF) and predict.ordfor()
(prediction of the target variable values of new observations).
References:
Hornung R. (2017) Ordinal Forests. Tech. Rep. 212, Department of Statistics,
University of Munich.
Author: Roman Hornung
Maintainer: Roman Hornung <hornung@ibe.med.uni-muenchen.de>
Diff between ordinalForest versions 2.0 dated 2017-07-26 and 2.1 dated 2017-10-20
ordinalForest-2.0/ordinalForest/R/perfm.R |only ordinalForest-2.0/ordinalForest/man/perfm.Rd |only ordinalForest-2.1/ordinalForest/DESCRIPTION | 24 ordinalForest-2.1/ordinalForest/MD5 | 24 ordinalForest-2.1/ordinalForest/NAMESPACE | 8 ordinalForest-2.1/ordinalForest/R/ordfor.R | 265 +++++------ ordinalForest-2.1/ordinalForest/R/ordinalForest-package.R | 26 - ordinalForest-2.1/ordinalForest/R/perff.R |only ordinalForest-2.1/ordinalForest/R/predict.ordfor.R | 13 ordinalForest-2.1/ordinalForest/R/print.ordfor.R | 12 ordinalForest-2.1/ordinalForest/R/simulateborders.R | 4 ordinalForest-2.1/ordinalForest/man/ordfor.Rd | 210 ++++---- ordinalForest-2.1/ordinalForest/man/ordinalForest-package.Rd | 26 - ordinalForest-2.1/ordinalForest/man/perff.Rd |only ordinalForest-2.1/ordinalForest/man/predict.ordfor.Rd | 7 15 files changed, 314 insertions(+), 305 deletions(-)
Title: Hierarchical Non-Negative Matrix Factorization
Description: Hierarchical and single-level non-negative matrix factorization. Several NMF algorithms are available.
Author: Nicolas Sauwen
Maintainer: Nicolas Sauwen <nicolas.sauwen@openanalytics.eu>
Diff between hNMF versions 0.3 dated 2017-06-07 and 0.4 dated 2017-10-20
DESCRIPTION | 12 +++++------- MD5 | 17 +++++++++++------ NAMESPACE | 10 ++++++++++ R/HALSacc.R | 10 +++++----- R/PGNMF.R | 14 ++++++++------ R/hNMF.R | 16 ++++++++-------- R/imoverlay.R | 45 +++++++++++++++++++++++++++++++++++++-------- R/oneLevelNMF.R |only man/initializeNMFModel.Rd |only man/oneLevelNMF.Rd |only man/preProcesInputData.Rd |only man/scaleNMFResult.Rd |only 12 files changed, 84 insertions(+), 40 deletions(-)
Title: Create Interactive Chart with the JavaScript 'Billboard' Library
Description: Provides an 'htmlwidgets' interface to 'billboard.js',
a re-usable easy interface JavaScript chart library, based on D3 v4+.
Chart types include line charts, scatterplots, bar/lollipop charts, histogram/density plots, pie/donut charts and gauge charts.
All charts are interactive, and a proxy method is implemented to smoothly update a chart without rendering it again in 'shiny' apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
NAVER Corp [cph] (billboard library)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between billboarder versions 0.0.3 dated 2017-08-29 and 0.1.0 dated 2017-10-20
billboarder-0.0.3/billboarder/man/bb_axis_labels.Rd |only billboarder-0.0.3/billboarder/man/bb_focus.Rd |only billboarder-0.0.3/billboarder/man/bb_transform.Rd |only billboarder-0.0.3/billboarder/man/bb_xs.Rd |only billboarder-0.1.0/billboarder/DESCRIPTION | 13 billboarder-0.1.0/billboarder/LICENSE | 2 billboarder-0.1.0/billboarder/MD5 | 103 - billboarder-0.1.0/billboarder/NAMESPACE | 30 billboarder-0.1.0/billboarder/NEWS.md |only billboarder-0.1.0/billboarder/R/bb_helpers.R | 934 +++++++++- billboarder-0.1.0/billboarder/R/bb_utils.R | 33 billboarder-0.1.0/billboarder/R/billboard-mapping.R |only billboarder-0.1.0/billboarder/R/billboarder-data.R | 15 billboarder-0.1.0/billboarder/R/billboarder-shiny.R | 201 ++ billboarder-0.1.0/billboarder/R/proxy_example.R | 44 billboarder-0.1.0/billboarder/README.md | 56 billboarder-0.1.0/billboarder/build/vignette.rds |binary billboarder-0.1.0/billboarder/data/prod_filiere_long.rda |only billboarder-0.1.0/billboarder/inst/doc/billboarder-intro.R | 13 billboarder-0.1.0/billboarder/inst/doc/billboarder-intro.Rmd | 22 billboarder-0.1.0/billboarder/inst/doc/billboarder-intro.html | 104 - billboarder-0.1.0/billboarder/inst/doc/billboarder-mapping.R |only billboarder-0.1.0/billboarder/inst/doc/billboarder-mapping.Rmd |only billboarder-0.1.0/billboarder/inst/doc/billboarder-mapping.html |only billboarder-0.1.0/billboarder/inst/doc/billboarder-options.html | 84 billboarder-0.1.0/billboarder/inst/htmlwidgets/billboarder.js | 74 billboarder-0.1.0/billboarder/inst/htmlwidgets/billboarder.yaml | 4 billboarder-0.1.0/billboarder/inst/htmlwidgets/lib/billboard-1.1.0 |only billboarder-0.1.0/billboarder/inst/htmlwidgets/lib/billboard-1.1.1 |only billboarder-0.1.0/billboarder/inst/img/density.png |only billboarder-0.1.0/billboarder/inst/img/histogram.png |only billboarder-0.1.0/billboarder/inst/img/histogram2.png |only billboarder-0.1.0/billboarder/inst/proxy_examples/bar/app.R | 10 billboarder-0.1.0/billboarder/inst/proxy_examples/bar2/app.R | 1 billboarder-0.1.0/billboarder/inst/proxy_examples/density |only billboarder-0.1.0/billboarder/inst/proxy_examples/gauge/app.R | 1 billboarder-0.1.0/billboarder/inst/proxy_examples/histogram |only billboarder-0.1.0/billboarder/inst/proxy_examples/line/app.R | 2 billboarder-0.1.0/billboarder/inst/proxy_examples/line2/app.R | 1 billboarder-0.1.0/billboarder/inst/proxy_examples/lollipop |only billboarder-0.1.0/billboarder/inst/proxy_examples/pie/app.R | 2 billboarder-0.1.0/billboarder/inst/proxy_examples/stacked_bar |only billboarder-0.1.0/billboarder/inst/proxy_examples/transform/app.R | 3 billboarder-0.1.0/billboarder/man/bb_barchart.Rd | 76 billboarder-0.1.0/billboarder/man/bb_data.Rd | 4 billboarder-0.1.0/billboarder/man/bb_densityplot.Rd |only billboarder-0.1.0/billboarder/man/bb_donutchart.Rd | 4 billboarder-0.1.0/billboarder/man/bb_gaugechart.Rd | 16 billboarder-0.1.0/billboarder/man/bb_histogram.Rd | 82 billboarder-0.1.0/billboarder/man/bb_linechart.Rd | 36 billboarder-0.1.0/billboarder/man/bb_lollipop.Rd |only billboarder-0.1.0/billboarder/man/bb_piechart.Rd | 20 billboarder-0.1.0/billboarder/man/bb_proxy_axis_labels.Rd |only billboarder-0.1.0/billboarder/man/bb_proxy_focus.Rd |only billboarder-0.1.0/billboarder/man/bb_proxy_groups.Rd |only billboarder-0.1.0/billboarder/man/bb_proxy_hide.Rd |only billboarder-0.1.0/billboarder/man/bb_proxy_legend.Rd |only billboarder-0.1.0/billboarder/man/bb_proxy_show.Rd |only billboarder-0.1.0/billboarder/man/bb_proxy_tooltip.Rd |only billboarder-0.1.0/billboarder/man/bb_proxy_transform.Rd |only billboarder-0.1.0/billboarder/man/bb_proxy_xs.Rd |only billboarder-0.1.0/billboarder/man/bb_scatterplot.Rd | 31 billboarder-0.1.0/billboarder/man/billboard-aes.Rd |only billboarder-0.1.0/billboarder/man/billboarder-shiny.Rd | 5 billboarder-0.1.0/billboarder/man/prod_filiere_long.Rd |only billboarder-0.1.0/billboarder/man/proxy_example.Rd | 35 billboarder-0.1.0/billboarder/vignettes/billboarder-intro.Rmd | 22 billboarder-0.1.0/billboarder/vignettes/billboarder-mapping.Rmd |only 68 files changed, 1777 insertions(+), 306 deletions(-)
Title: Numerical Methods and Optimization in Finance
Description: Functions, examples and data from the book
"Numerical Methods and Optimization in Finance" by M.
'Gilli', D. 'Maringer' and E. Schumann (2011), ISBN
978-0123756626. The package provides implementations of
several optimisation heuristics, such as Differential
Evolution, Genetic Algorithms and Threshold Accepting.
There are also functions for the valuation of financial
instruments, such as bonds and options, and functions that
help with stochastic simulations.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between NMOF versions 0.40-0 dated 2016-10-20 and 1.2-2 dated 2017-10-20
DESCRIPTION | 13 MD5 | 172 +++-- NAMESPACE | 117 ++- NEWS | 84 +- R/CPPIgap.R |only R/DEopt.R | 15 R/EuropeanCall.R | 1 R/EuropeanCallBE.R | 7 R/LSopt.R | 13 R/SAopt.R |only R/TAopt.R | 66 +- R/bonds.R | 21 R/bracket.R | 2 R/bundFuture.R |only R/callMerton.R | 29 R/colSubset.R | 5 R/divRatio.R |only R/drawdown.R | 5 R/mc.R | 4 R/options.R | 35 - R/pm.R | 18 R/portfolio.R | 60 + R/qTable.R | 11 R/repairMatrix.R | 9 R/resampleC.R | 53 - R/restartOpt.R | 8 R/testFun.R | 2 build/vignette.rds |binary inst/NMOFex/NMOFman.R | 1093 ++++++++++++++++++++++------------- inst/doc/An_overview.R | 14 inst/doc/An_overview.Rnw | 19 inst/doc/An_overview.pdf |binary inst/doc/DEnss.pdf |binary inst/doc/LSselect.pdf |binary inst/doc/PSlms.pdf |binary inst/doc/TAportfolio.pdf |binary inst/doc/local_search.R |only inst/doc/local_search.Rnw |only inst/doc/local_search.pdf |only inst/doc/qTableEx.R | 2 inst/doc/qTableEx.Rnw | 2 inst/doc/qTableEx.pdf |binary inst/doc/repair.R | 2 inst/doc/repair.Rnw | 4 inst/doc/repair.pdf |binary inst/doc/vectorise.pdf |binary inst/unitTests/test_results.txt | 84 +- inst/unitTests/unitTestsRestartOpt.R | 22 inst/unitTests/unitTestsSAopt.R |only inst/unitTests/unitTests_portfolio.R |only man/CPPI.Rd |only man/DEopt.Rd | 12 man/EuropeanCall.Rd | 4 man/GAopt.Rd | 7 man/LS.info.Rd | 9 man/LSopt.Rd | 11 man/MA.Rd | 3 man/NMOF-internal.Rd | 10 man/NMOF-package.Rd | 52 + man/NS.Rd | 5 man/NSf.Rd | 3 man/PSopt.Rd | 7 man/SA.info.Rd |only man/SAopt.Rd |only man/TA.info.Rd | 32 - man/TAopt.Rd | 11 man/bracketing.Rd | 4 man/bundData.Rd | 5 man/bundFuture.Rd |only man/callCF.Rd | 4 man/callHestoncf.Rd | 4 man/callMerton.Rd | 3 man/colSubset.Rd | 7 man/divRatio.Rd |only man/drawdown.Rd | 3 man/fundData.Rd | 4 man/gridSearch.Rd | 4 man/mc.Rd | 3 man/minvar.Rd |only man/optionData.Rd | 3 man/options.Rd | 6 man/pm.Rd | 9 man/putCallParity.Rd | 3 man/qTable.Rd | 3 man/repairMatrix.Rd | 3 man/resampleC.Rd | 3 man/restartOpt.Rd | 4 man/showExample.Rd | 4 man/testFunctions.Rd | 3 man/xtContractValue.Rd | 6 man/xwGauss.Rd | 4 vignettes/An_overview.Rnw | 19 vignettes/local_search.Rnw |only vignettes/qTableEx.Rnw | 2 vignettes/repair.Rnw | 4 95 files changed, 1413 insertions(+), 862 deletions(-)
Title: Easy Authentication with Google OAuth2 API
Description: Create R functions that interact with OAuth2 Google APIs easily,
with auto-refresh and Shiny compatibility.
Author: Mark Edmondson [aut, cre] (0000-0002-8434-3881),
Jennifer Bryan [ctb],
Johann deBoer [ctb],
Neal Richardson [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAuthR versions 0.5.1 dated 2017-03-31 and 0.6.0 dated 2017-10-20
googleAuthR-0.5.1/googleAuthR/R/googleAuthR_auth.R |only googleAuthR-0.5.1/googleAuthR/R/googleAuthR_auto_auth.R |only googleAuthR-0.5.1/googleAuthR/R/googleAuthR_batch.R |only googleAuthR-0.5.1/googleAuthR/R/googleAuthR_discovery.R |only googleAuthR-0.5.1/googleAuthR/R/googleAuthR_discovery_build.R |only googleAuthR-0.5.1/googleAuthR/R/googleAuthR_discovery_utilities.R |only googleAuthR-0.5.1/googleAuthR/R/googleAuthR_gadget.R |only googleAuthR-0.5.1/googleAuthR/R/googleAuthR_generator.R |only googleAuthR-0.5.1/googleAuthR/R/googleAuthR_options.R |only googleAuthR-0.5.1/googleAuthR/R/googleAuthR_shiny.R |only googleAuthR-0.5.1/googleAuthR/R/googleAuthR_utility.R |only googleAuthR-0.5.1/googleAuthR/man/RFC_convert.Rd |only googleAuthR-0.5.1/googleAuthR/man/check.Url.Rd |only googleAuthR-0.5.1/googleAuthR/man/check_cached_scopes.Rd |only googleAuthR-0.5.1/googleAuthR/man/error.message.Rd |only googleAuthR-0.5.1/googleAuthR/man/gar_gadget.Rd |only 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googleAuthR-0.6.0/googleAuthR/NEWS.md | 40 googleAuthR-0.6.0/googleAuthR/R/auth.R |only googleAuthR-0.6.0/googleAuthR/R/auto_auth.R |only googleAuthR-0.6.0/googleAuthR/R/batch.R |only googleAuthR-0.6.0/googleAuthR/R/checks.R |only googleAuthR-0.6.0/googleAuthR/R/deprecated.R |only googleAuthR-0.6.0/googleAuthR/R/discovery.R |only googleAuthR-0.6.0/googleAuthR/R/discovery_build.R |only googleAuthR-0.6.0/googleAuthR/R/discovery_utilities.R |only googleAuthR-0.6.0/googleAuthR/R/gadget.R |only googleAuthR-0.6.0/googleAuthR/R/gce.R |only googleAuthR-0.6.0/googleAuthR/R/generator.R |only googleAuthR-0.6.0/googleAuthR/R/googleAuthR.R | 46 googleAuthR-0.6.0/googleAuthR/R/memoise.R |only googleAuthR-0.6.0/googleAuthR/R/options.R |only googleAuthR-0.6.0/googleAuthR/R/shiny.R |only googleAuthR-0.6.0/googleAuthR/R/test-helpers.R |only googleAuthR-0.6.0/googleAuthR/R/utility.R |only googleAuthR-0.6.0/googleAuthR/README.md | 677 ---------- googleAuthR-0.6.0/googleAuthR/build/vignette.rds |binary googleAuthR-0.6.0/googleAuthR/inst/doc/advanced-building.Rmd |only googleAuthR-0.6.0/googleAuthR/inst/doc/advanced-building.html |only googleAuthR-0.6.0/googleAuthR/inst/doc/building.Rmd | 146 -- googleAuthR-0.6.0/googleAuthR/inst/doc/building.html | 233 +-- googleAuthR-0.6.0/googleAuthR/inst/doc/google-authentication-types.Rmd | 13 googleAuthR-0.6.0/googleAuthR/inst/doc/google-authentication-types.html | 46 googleAuthR-0.6.0/googleAuthR/inst/doc/setup.Rmd | 20 googleAuthR-0.6.0/googleAuthR/inst/doc/setup.html | 27 googleAuthR-0.6.0/googleAuthR/inst/doc/troubleshooting.Rmd |only googleAuthR-0.6.0/googleAuthR/inst/doc/troubleshooting.html |only googleAuthR-0.6.0/googleAuthR/man/Authentication.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/applyDataParseFunction.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/authReturnCode.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/checkGoogleAPIError.Rd | 10 googleAuthR-0.6.0/googleAuthR/man/checkTokenAPI.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/createCode.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/doBatchRequest.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/doHttrRequest.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/gar_api_generator.Rd | 13 googleAuthR-0.6.0/googleAuthR/man/gar_attach_auto_auth.Rd | 23 googleAuthR-0.6.0/googleAuthR/man/gar_auth.Rd | 4 googleAuthR-0.6.0/googleAuthR/man/gar_auth_js.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/gar_auth_jsUI.Rd | 9 googleAuthR-0.6.0/googleAuthR/man/gar_auth_service.Rd | 4 googleAuthR-0.6.0/googleAuthR/man/gar_auto_auth.Rd | 22 googleAuthR-0.6.0/googleAuthR/man/gar_batch.Rd | 4 googleAuthR-0.6.0/googleAuthR/man/gar_batch_walk.Rd | 4 googleAuthR-0.6.0/googleAuthR/man/gar_cache_setup.Rd |only googleAuthR-0.6.0/googleAuthR/man/gar_check_existing_token.Rd |only googleAuthR-0.6.0/googleAuthR/man/gar_create_api_objects.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/gar_create_api_skeleton.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/gar_create_package.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/gar_discovery_api.Rd | 4 googleAuthR-0.6.0/googleAuthR/man/gar_discovery_apis_list.Rd | 4 googleAuthR-0.6.0/googleAuthR/man/gar_gce_auth.Rd | 6 googleAuthR-0.6.0/googleAuthR/man/gar_gce_auth_email.Rd |only googleAuthR-0.6.0/googleAuthR/man/gar_shiny_getAuthUrl.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/gar_shiny_getToken.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/gar_shiny_getUrl.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/gar_token_info.Rd | 7 googleAuthR-0.6.0/googleAuthR/man/get_google_token.Rd | 4 googleAuthR-0.6.0/googleAuthR/man/googleAuth.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/googleAuthR.Rd | 51 googleAuthR-0.6.0/googleAuthR/man/googleAuthUI.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/loginOutput.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/makeBatchRequest.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/parseBatchResponse.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/reactiveAccessToken.Rd | 3 googleAuthR-0.6.0/googleAuthR/man/renderLogin.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/retryRequest.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/revokeEventObserver.Rd | 2 googleAuthR-0.6.0/googleAuthR/man/skip_if_no_env_auth.Rd |only googleAuthR-0.6.0/googleAuthR/man/token_exists.Rd | 5 googleAuthR-0.6.0/googleAuthR/man/with_shiny.Rd | 2 googleAuthR-0.6.0/googleAuthR/tests/testthat/googleAuthR_tests.httr-oauth |only googleAuthR-0.6.0/googleAuthR/tests/testthat/mock |only googleAuthR-0.6.0/googleAuthR/tests/testthat/test-batch.R | 210 +-- googleAuthR-0.6.0/googleAuthR/tests/testthat/test-discovery.R | 179 +- googleAuthR-0.6.0/googleAuthR/tests/testthat/test-integration.R |only googleAuthR-0.6.0/googleAuthR/tests/testthat/test-unit.R |only googleAuthR-0.6.0/googleAuthR/tests/www.googleapis.com |only googleAuthR-0.6.0/googleAuthR/vignettes/advanced-building.Rmd |only googleAuthR-0.6.0/googleAuthR/vignettes/building.Rmd | 146 -- googleAuthR-0.6.0/googleAuthR/vignettes/google-authentication-types.Rmd | 13 googleAuthR-0.6.0/googleAuthR/vignettes/setup.Rmd | 20 googleAuthR-0.6.0/googleAuthR/vignettes/troubleshooting.Rmd |only 120 files changed, 759 insertions(+), 1516 deletions(-)
More information about epanet2toolkit at CRAN
Permanent link
Title: Kernel Hazard Estimation with Best One-Sided and Double
One-Sided Cross-Validation
Description: Local linear hazard estimator and its multiplicatively bias correction, including three bandwidth selection methods: best one-sided cross-validation, double one-sided cross-validation, and standard cross-validation.
Author: M.L. Gamiz, E. Mammen, M.D. Martinez-Miranda and J.P. Nielsen
Maintainer: Maria Dolores Martinez-Miranda <mmiranda@ugr.es>
Diff between DOvalidation versions 0.1.0 dated 2014-11-09 and 1.1.0 dated 2017-10-20
DOvalidation-0.1.0/DOvalidation/R/FunctionsDoHazard_JRSSB.R |only DOvalidation-1.1.0/DOvalidation/DESCRIPTION | 14 +- DOvalidation-1.1.0/DOvalidation/MD5 | 36 ++++-- DOvalidation-1.1.0/DOvalidation/NAMESPACE | 2 DOvalidation-1.1.0/DOvalidation/R/FunctionsBOandMBChazard.R |only DOvalidation-1.1.0/DOvalidation/R/FunctionsDoHazard_JRSSB_updated.R |only DOvalidation-1.1.0/DOvalidation/R/Functiontoaggregate.R |only DOvalidation-1.1.0/DOvalidation/man/DK.rd | 3 DOvalidation-1.1.0/DOvalidation/man/DOvalidation-package.Rd | 55 ++++------ DOvalidation-1.1.0/DOvalidation/man/Iceland.rd | 3 DOvalidation-1.1.0/DOvalidation/man/K.epa.Rd | 5 DOvalidation-1.1.0/DOvalidation/man/K.sextic.Rd | 5 DOvalidation-1.1.0/DOvalidation/man/UK.rd | 3 DOvalidation-1.1.0/DOvalidation/man/US.rd | 3 DOvalidation-1.1.0/DOvalidation/man/b.BO.MBC.Rd |only DOvalidation-1.1.0/DOvalidation/man/b.BO.Rd |only DOvalidation-1.1.0/DOvalidation/man/b.CV.MBC.Rd |only DOvalidation-1.1.0/DOvalidation/man/b.CV.Rd | 39 +++---- DOvalidation-1.1.0/DOvalidation/man/b.OSCV.MBC.Rd |only DOvalidation-1.1.0/DOvalidation/man/b.OSCV.Rd | 48 ++++---- DOvalidation-1.1.0/DOvalidation/man/discretise.data.Rd |only DOvalidation-1.1.0/DOvalidation/man/hazard.LL.RH.Rd | 13 +- DOvalidation-1.1.0/DOvalidation/man/hazard.LL.Rd | 29 ++--- DOvalidation-1.1.0/DOvalidation/man/hazard.MBC.Rd |only 24 files changed, 129 insertions(+), 129 deletions(-)
Title: A Universal Foreach Parallel Adaptor using the Future API of the
'future' Package
Description: Provides a '%dopar%' adaptor such that any type of futures can
be used as backends for the 'foreach' framework.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between doFuture versions 0.5.1 dated 2017-09-12 and 0.6.0 dated 2017-10-20
doFuture-0.5.1/doFuture/tests/zzz_other_packages,foreach.R |only doFuture-0.5.1/doFuture/tests/zzz_other_packages,plyr.R |only doFuture-0.6.0/doFuture/DESCRIPTION | 8 - doFuture-0.6.0/doFuture/MD5 | 38 ++++-- doFuture-0.6.0/doFuture/NEWS | 33 +++++ doFuture-0.6.0/doFuture/R/doFuture.R | 74 ++++++++++--- doFuture-0.6.0/doFuture/R/options.R |only doFuture-0.6.0/doFuture/build/vignette.rds |binary doFuture-0.6.0/doFuture/inst/doc/doFuture.html | 35 +++++- doFuture-0.6.0/doFuture/inst/doc/doFuture.md.rsp | 33 +++++ doFuture-0.6.0/doFuture/inst/tests2/NMF |only doFuture-0.6.0/doFuture/inst/tests2/TSP |only doFuture-0.6.0/doFuture/inst/tests2/caret |only doFuture-0.6.0/doFuture/inst/tests2/foreach/examples.R | 62 +--------- doFuture-0.6.0/doFuture/inst/tests2/glmnet |only doFuture-0.6.0/doFuture/inst/tests2/incl |only doFuture-0.6.0/doFuture/inst/tests2/plyr/examples.R | 72 +----------- doFuture-0.6.0/doFuture/man/doFuture.options.Rd |only doFuture-0.6.0/doFuture/tests/DEPRECATED.R |only doFuture-0.6.0/doFuture/tests/foreach,globals.R |only doFuture-0.6.0/doFuture/tests/incl/start,load-only.R | 11 - doFuture-0.6.0/doFuture/tests/options.R |only doFuture-0.6.0/doFuture/tests/zzz_opt-in,NMF.R |only doFuture-0.6.0/doFuture/tests/zzz_opt-in,TSP.R |only doFuture-0.6.0/doFuture/tests/zzz_opt-in,caret.R |only doFuture-0.6.0/doFuture/tests/zzz_opt-in,foreach.R |only doFuture-0.6.0/doFuture/tests/zzz_opt-in,glmnet.R |only doFuture-0.6.0/doFuture/tests/zzz_opt-in,plyr.R |only doFuture-0.6.0/doFuture/vignettes/doFuture.md.rsp | 33 +++++ 29 files changed, 238 insertions(+), 161 deletions(-)
Title: Maximum Likelihood Analysis of Animal Movement Behavior Using
Multivariate Hidden Markov Models
Description: Extended tools for analyzing telemetry data using (multivariate) hidden Markov models. These include processing of tracking data, fitting HMMs to location and auxiliary biotelemetry or environmental data, multiple imputation for incorporating location measurement error and missing data, visualization of data and fitted model, decoding of the state process...
Author: Brett McClintock, Theo Michelot
Maintainer: Brett McClintock <brett.mcclintock@noaa.gov>
Diff between momentuHMM versions 1.1.1 dated 2017-09-20 and 1.2.0 dated 2017-10-20
DESCRIPTION | 8 +- MD5 | 125 +++++++++++++++++----------------- NEWS | 19 +++++ R/CIbeta.R | 37 +++++++++- R/CIreal.R | 51 ++++++++------ R/MIfitHMM.R | 7 + R/MIpool.R | 54 ++++++++------ R/RcppExports.R | 2 R/allProbs.R | 5 + R/distAngle.R | 5 - R/fitHMM.R | 149 +++++++++++++++++++++++++++++++---------- R/getPar.R | 17 +++- R/getPar0.R | 36 ++++++++- R/getParDM.R | 44 ++++++------ R/getSplineDM.R | 4 + R/getXB.R | 2 R/logAlpha.R | 4 - R/momentuHMM_utils.R | 22 +++++- R/moveHMMwrap.R | 3 R/n2w.R | 11 +-- R/nLogLike.R | 23 +++--- R/plot_crwData.R | 51 ++++++++------ R/plot_momentuHMM.R | 22 +++--- R/print_miSum.R | 60 +++++++++------- R/print_momentuHMM.R | 7 + R/pseudoRes.R | 42 ++++++----- R/simData.R | 137 +++++++++++++++++++++++++++++++------ R/turnAngle.R | 7 + R/viterbi.R | 4 - R/w2n.R | 34 +++++---- README.md | 9 ++ data/example.RData |binary inst/CITATION | 19 ++--- inst/doc/momentuHMM.Rnw | 18 ++-- inst/doc/momentuHMM.pdf |binary man/MIfitHMM.Rd | 18 ++-- man/distAngle.Rd | 4 - man/fitHMM.Rd | 47 ++++++++++-- man/getPar.Rd | 3 man/getPar0.Rd | 10 +- man/getParDM.Rd | 2 man/n2w.Rd | 9 +- man/nLogLike.Rd | 18 ++-- man/nLogLike_rcpp.Rd | 2 man/plot.crwData.Rd | 4 - man/simData.Rd | 48 ++++++++++--- man/turnAngle.Rd | 4 - man/w2n.Rd | 14 ++- src/momentuHMM_init.c | 34 ++++----- src/nLogLike.cpp | 85 ++++++++++++++++------- tests/testthat/Rplots.pdf |binary tests/testthat/test_CIbeta.R | 2 tests/testthat/test_fitHMM.R | 1 tests/testthat/test_getDM.R | 6 - tests/testthat/test_n2w.R | 2 tests/testthat/test_nLogLike.R | 16 ++-- tests/testthat/test_w2n.R | 12 +-- vignettes/elephant_plotSat.png |binary vignettes/harbourSealExample.R | 14 ++- vignettes/master.bib | 14 ++- vignettes/momentuHMM.Rnw | 18 ++-- vignettes/nfsExample.R | 2 vignettes/trimclip.sty |only vignettes/vignette_examples.R | 2 64 files changed, 960 insertions(+), 469 deletions(-)
More information about genomic.autocorr at CRAN
Permanent link
Title: Analysis of Incubation Data
Description: Suite of functions to study animal incubation.
At the core of incR
lays an algorithm that allows for the scoring of
incubation behaviour. Additionally, several functions
extract biologically relevant metrics of incubation such as off-bout number
and off-bout duration - for a review of avian incubation studies,
see Nests, Eggs, and Incubation: New ideas about avian reproduction (2015)
edited by D. Charles Deeming and S. James Reynolds <doi:10.1093/acprof:oso/9780198718666.001.0001>.
Author: Pablo Capilla-Lasheras [aut, cre]
Maintainer: Pablo Capilla-Lasheras <pacapilla@gmail.com>
Diff between incR versions 0.3.1 dated 2017-07-20 and 1.0.1 dated 2017-10-20
incR-0.3.1/incR/R/incRactivity.R |only incR-0.3.1/incR/R/incRconstancy.R |only incR-0.3.1/incR/man/incRactivity.Rd |only incR-0.3.1/incR/man/incRconstancy.Rd |only incR-1.0.1/incR/DESCRIPTION | 8 ++--- incR-1.0.1/incR/MD5 | 34 ++++++++++++------------- incR-1.0.1/incR/NAMESPACE | 4 +- incR-1.0.1/incR/NEWS.md | 12 ++++++++ incR-1.0.1/incR/R/inRt.R | 20 +++++++------- incR-1.0.1/incR/R/incR.R | 4 +- incR-1.0.1/incR/R/incRact.R |only incR-1.0.1/incR/R/incRatt.R |only incR-1.0.1/incR/R/incRbouts.R | 27 +++++++------------ incR-1.0.1/incR/inst/doc/incR_pipeline.R | 14 +++++----- incR-1.0.1/incR/inst/doc/incR_pipeline.Rmd | 38 +++++++++++++++------------- incR-1.0.1/incR/inst/doc/incR_pipeline.html | 34 +++++++++++++------------ incR-1.0.1/incR/man/incR.Rd | 4 +- incR-1.0.1/incR/man/incRact.Rd |only incR-1.0.1/incR/man/incRatt.Rd |only incR-1.0.1/incR/man/incRbouts.Rd | 4 +- incR-1.0.1/incR/man/incRt.Rd | 14 +++++----- incR-1.0.1/incR/vignettes/incR_pipeline.Rmd | 38 +++++++++++++++------------- 22 files changed, 135 insertions(+), 120 deletions(-)
Title: Robust Sparse PCA using the ROSPCA Algorithm
Description: Implementation of robust sparse PCA using the ROSPCA algorithm
of Hubert et al. (2016) <DOI:10.1080/00401706.2015.1093962>.
Author: Tom Reynkens [aut, cre],
Valentin Todorov [ctb] (Original R code for PcaHubert and diagnostic
plot in rrcov package),
Mia Hubert [ctb],
Eric Schmitt [ctb],
Tim Verdonck [ctb]
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>
Diff between rospca versions 1.0.2 dated 2017-04-03 and 1.0.3 dated 2017-10-20
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- inst/NEWS.Rd | 8 ++++++++ 3 files changed, 16 insertions(+), 7 deletions(-)
Title: Estimating Finite State Machine Models from Data
Description: Our method automatically generates models of dynamic decision-
making that both have strong predictive power and are interpretable in human
terms. We use an efficient model representation and a genetic algorithm-based
estimation process to generate simple deterministic approximations that explain
most of the structure of complex stochastic processes. We have applied the
software to empirical data, and demonstrated it's ability to recover known data-
generating processes by simulating data with agent-based models and correctly
deriving the underlying decision models for multiple agent models and degrees of
stochasticity.
Author: Nay John J. [aut],
Gilligan Jonathan M. [cre, aut]
Maintainer: Gilligan Jonathan M. <jonathan.gilligan@vanderbilt.edu>
Diff between datafsm versions 0.2.0 dated 2017-06-17 and 0.2.1 dated 2017-10-20
datafsm-0.2.0/datafsm/README.md |only datafsm-0.2.1/datafsm/DESCRIPTION | 10 ++-- datafsm-0.2.1/datafsm/MD5 | 23 ++++----- datafsm-0.2.1/datafsm/NEWS.md | 4 + datafsm-0.2.1/datafsm/R/RcppExports.R | 4 - datafsm-0.2.1/datafsm/build/vignette.rds |binary datafsm-0.2.1/datafsm/inst/doc/datafsmVignette.html | 44 ++++++++++--------- datafsm-0.2.1/datafsm/man/evolve_model.Rd | 8 +-- datafsm-0.2.1/datafsm/man/evolve_model_cv.Rd | 5 -- datafsm-0.2.1/datafsm/man/evolve_model_ntimes.Rd | 8 +-- datafsm-0.2.1/datafsm/man/ga_fsm-class.Rd | 4 - datafsm-0.2.1/datafsm/src/RcppExports.cpp | 8 +-- datafsm-0.2.1/datafsm/tests/testthat/test_mainfunc.R | 4 - 13 files changed, 65 insertions(+), 57 deletions(-)
Title: Understanding Nonlinear Mixed Effects Modeling for Population
Pharmacokinetics
Description: This shows how NONMEM(R) <http://www.iconplc.com/innovation/nonmem/> software works. NONMEM's classical estimation methods like 'First Order(FO) approximation', 'First Order Conditional Estimation(FOCE)', and 'Laplacian approximation' are explained.
Author: Kyun-Seop Bae
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between nmw versions 0.1.1 dated 2017-03-14 and 0.1.2 dated 2017-10-20
nmw-0.1.1/nmw/inst/doc/nmw-vignette-out.txt |only nmw-0.1.2/nmw/DESCRIPTION | 12 +- nmw-0.1.2/nmw/MD5 | 36 ++++---- nmw-0.1.2/nmw/NAMESPACE | 1 nmw-0.1.2/nmw/R/CovStep.R | 5 - nmw-0.1.2/nmw/R/EstStep.R | 6 - nmw-0.1.2/nmw/R/InitStep.R | 44 +++++----- nmw-0.1.2/nmw/R/MinUtil.R | 99 ----------------------- nmw-0.1.2/nmw/R/Objs.R | 67 ++++++++------- nmw-0.1.2/nmw/inst/NEWS.Rd | 9 ++ nmw-0.1.2/nmw/inst/doc/THEO-FO.CTL |only nmw-0.1.2/nmw/inst/doc/THEO-FO.OUT.txt |only nmw-0.1.2/nmw/inst/doc/THEO-FOCEI.CTL |only nmw-0.1.2/nmw/inst/doc/THEO-FOCEI.OUT.txt |only nmw-0.1.2/nmw/inst/doc/THEO-LAPLI.CTL |only nmw-0.1.2/nmw/inst/doc/THEO-LAPLI.OUT.txt |only nmw-0.1.2/nmw/inst/doc/nmw-manual.pdf |binary nmw-0.1.2/nmw/inst/doc/nmw-vignette.R | 115 ++++++++------------------- nmw-0.1.2/nmw/inst/doc/nmw-vignette.Rout.txt |only nmw-0.1.2/nmw/man/CovStep.Rd | 2 nmw-0.1.2/nmw/man/InitStep.Rd | 87 ++++++-------------- nmw-0.1.2/nmw/man/MinUtil.Rd | 2 nmw-0.1.2/nmw/man/nmw-package.Rd | 112 +++++++++----------------- 23 files changed, 209 insertions(+), 388 deletions(-)
Title: A Test Environment for HTTP Requests
Description: Testing code and packages that communicate with remote servers can
be painful. Dealing with authentication, bootstrapping server state,
cleaning up objects that may get created during the test run, network
flakiness, and other complications can make testing seem too costly to
bother with. But it doesn't need to be that hard. This package enables one
to test all of the logic on the R sides of the API in your package without
requiring access to the remote service. Importantly, it provides three test
contexts that mock the network connection in different ways, and it offers
additional expectations to assert that HTTP requests were--or were
not--made. It also allows you to record real API responses to use as mocks
in tests. With these tools, one can test that code is making the intended
requests and that it handles the expected responses correctly, all without
depending on a connection to a remote API.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal.p.richardson@gmail.com>
Diff between httptest versions 2.1.2 dated 2017-08-04 and 2.3.2 dated 2017-10-20
DESCRIPTION | 16 - MD5 | 55 ++-- NAMESPACE | 9 NEWS.md | 46 ++- R/capture-requests.R | 65 ++--- R/fake-http.R | 44 +-- R/mock-api.R | 24 - R/offline.R | 3 R/redact.R |only R/without-internet.R | 9 README.md | 91 +++++-- build/vignette.rds |binary inst/doc/httptest.Rmd | 325 +++++++++++++------------ inst/doc/httptest.html | 79 ++++-- inst/doc/httptest.md | 2 inst/doc/redacting.Rmd |only inst/doc/redacting.html |only inst/doc/redacting.md |only man/capture_requests.Rd | 14 - man/fakeResponse.Rd | 24 - man/redact.Rd |only man/without_internet.Rd | 4 tests/testthat/example.com/login-712027-POST.R |only tests/testthat/httpbin.org |only tests/testthat/test-capture-requests.R | 42 ++- tests/testthat/test-fake-http.R | 11 tests/testthat/test-mock-api.R | 22 - tests/testthat/test-mock-paths.R | 12 tests/testthat/test-redact.R |only tests/testthat/test-without-internet.R | 5 vignettes/httptest.Rmd | 325 +++++++++++++------------ vignettes/redacting.Rmd |only 32 files changed, 694 insertions(+), 533 deletions(-)
Title: Bayesian Accrual Prediction
Description: Subject recruitment for medical research is challenging. Slow patient accrual leads to delay in research. Accrual monitoring during the process of recruitment is critical. Researchers need reliable tools to manage the accrual rate. We developed a Bayesian method that integrates researcher's experience on previous trials and data from the current study, providing reliable prediction on accrual rate for clinical studies. In this R package, we present functions for Bayesian accrual prediction which can be easily used by statisticians and clinical researchers.
Author: Junhao Liu, Yu Jiang, Cen Wu, Steve Simon, Matthew S. Mayo, Rama Raghavan, Byron J. Gajewski
Maintainer: Junhao Liu <jliu4@kumc.edu>
Diff between accrual versions 1.2 dated 2016-07-17 and 1.3 dated 2017-10-20
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++++---- R/accrual.T.plot.R | 6 +++--- R/accrual.gui.R | 31 ++++++++++++++++++++++++------- R/accrual.multi.n.R |only R/accrual.plot.multicenter.R |only R/accrual.plots.R | 4 ++-- man/accrual.multi.n.Rd |only man/accrual.plot.multicenter.Rd |only 9 files changed, 41 insertions(+), 20 deletions(-)