Title: Parses LaTeX Documents for Errors
Description: Checks LaTeX documents and .bib files for typing errors, such as spelling errors, incorrect quotation marks. Also provides useful functions for parsing and linting bibliography files.
Author: Hugh Parsonage
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between TeXCheckR versions 0.2.0 dated 2017-06-17 and 0.4.1 dated 2017-10-22
TeXCheckR-0.2.0/TeXCheckR/R/replace_LaTeX_argument.R |only TeXCheckR-0.2.0/TeXCheckR/man/TexCheckR-package.Rd |only TeXCheckR-0.2.0/TeXCheckR/man/replace_LaTeX_argument.Rd |only TeXCheckR-0.4.1/TeXCheckR/DESCRIPTION | 14 TeXCheckR-0.4.1/TeXCheckR/MD5 | 163 ++++-- TeXCheckR-0.4.1/TeXCheckR/NAMESPACE | 25 - TeXCheckR-0.4.1/TeXCheckR/NEWS.md |only TeXCheckR-0.4.1/TeXCheckR/R/TexCheckR-package.R | 34 - TeXCheckR-0.4.1/TeXCheckR/R/any_bib_duplicates.R | 93 +++ TeXCheckR-0.4.1/TeXCheckR/R/bib_parser.R | 57 +- TeXCheckR-0.4.1/TeXCheckR/R/check_all_figs_tbls_refd.R | 250 ++++++---- TeXCheckR-0.4.1/TeXCheckR/R/check_biber.R | 39 + TeXCheckR-0.4.1/TeXCheckR/R/check_consecutive_words.R | 6 TeXCheckR-0.4.1/TeXCheckR/R/check_dashes.R | 28 - TeXCheckR-0.4.1/TeXCheckR/R/check_escapes.R | 2 TeXCheckR-0.4.1/TeXCheckR/R/check_footnote_typography.R | 132 +++-- TeXCheckR-0.4.1/TeXCheckR/R/check_labels.R | 9 TeXCheckR-0.4.1/TeXCheckR/R/check_quote_marks.R | 14 TeXCheckR-0.4.1/TeXCheckR/R/check_sentence_ending_periods.R | 2 TeXCheckR-0.4.1/TeXCheckR/R/check_spelling.R | 151 ++---- TeXCheckR-0.4.1/TeXCheckR/R/check_unclosed_parentheses.R |only TeXCheckR-0.4.1/TeXCheckR/R/combine_bib_fields.R |only TeXCheckR-0.4.1/TeXCheckR/R/commands_used.R |only TeXCheckR-0.4.1/TeXCheckR/R/extract_LaTeX_argument.R |only TeXCheckR-0.4.1/TeXCheckR/R/extract_mandatory_LaTeX_argument.R |only TeXCheckR-0.4.1/TeXCheckR/R/extract_optional_LaTeX_argument.R |only TeXCheckR-0.4.1/TeXCheckR/R/extract_valid_abbreviations.R | 25 - TeXCheckR-0.4.1/TeXCheckR/R/inputs_of.R | 8 TeXCheckR-0.4.1/TeXCheckR/R/lint_bib.R | 67 +- TeXCheckR-0.4.1/TeXCheckR/R/nth_arg_positions.R | 141 ++++- TeXCheckR-0.4.1/TeXCheckR/R/parse_tex.R |only TeXCheckR-0.4.1/TeXCheckR/R/positions_of_strings.R | 2 TeXCheckR-0.4.1/TeXCheckR/R/remove_valid_contractions.R | 10 TeXCheckR-0.4.1/TeXCheckR/R/report_error.R | 153 +----- TeXCheckR-0.4.1/TeXCheckR/R/separate_sentences.R | 1 TeXCheckR-0.4.1/TeXCheckR/R/sysdata.rda |binary TeXCheckR-0.4.1/TeXCheckR/R/tex_group_by_char.R |only TeXCheckR-0.4.1/TeXCheckR/R/utils.R | 69 ++ TeXCheckR-0.4.1/TeXCheckR/R/valid_English_contractions.R | 2 TeXCheckR-0.4.1/TeXCheckR/R/validate_bibliography.R | 9 TeXCheckR-0.4.1/TeXCheckR/R/weld_bmillion.R | 1 TeXCheckR-0.4.1/TeXCheckR/R/zzz.R | 8 TeXCheckR-0.4.1/TeXCheckR/man/TeXCheckR-package.Rd |only TeXCheckR-0.4.1/TeXCheckR/man/any_bib_duplicates.Rd | 4 TeXCheckR-0.4.1/TeXCheckR/man/argument_parsing.Rd | 21 TeXCheckR-0.4.1/TeXCheckR/man/bib_parser.Rd | 4 TeXCheckR-0.4.1/TeXCheckR/man/check_biber.Rd | 6 TeXCheckR-0.4.1/TeXCheckR/man/check_consecutive_words.Rd | 6 TeXCheckR-0.4.1/TeXCheckR/man/check_labels.Rd | 5 TeXCheckR-0.4.1/TeXCheckR/man/check_quote_marks.Rd | 4 TeXCheckR-0.4.1/TeXCheckR/man/check_spelling.Rd | 28 - TeXCheckR-0.4.1/TeXCheckR/man/commands_used.Rd |only TeXCheckR-0.4.1/TeXCheckR/man/extract_LaTeX_argument.Rd |only TeXCheckR-0.4.1/TeXCheckR/man/extract_mandatory_LaTeX_argument.Rd |only TeXCheckR-0.4.1/TeXCheckR/man/extract_optional_LaTeX_argument.Rd |only TeXCheckR-0.4.1/TeXCheckR/man/extract_validate_abbreviations.Rd | 6 TeXCheckR-0.4.1/TeXCheckR/man/figs_tbls_unrefd.Rd |only TeXCheckR-0.4.1/TeXCheckR/man/lint_bib.Rd | 2 TeXCheckR-0.4.1/TeXCheckR/man/parse_tex.Rd |only TeXCheckR-0.4.1/TeXCheckR/man/report_error.Rd | 38 - TeXCheckR-0.4.1/TeXCheckR/man/tex_group_by_char.Rd |only TeXCheckR-0.4.1/TeXCheckR/man/valid_English_contractions.Rd | 2 TeXCheckR-0.4.1/TeXCheckR/man/validate_bibliography.Rd | 5 TeXCheckR-0.4.1/TeXCheckR/tests/testthat/check-all-figs-tbls-refd/Vrefrange.tex |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/check-all-figs-tbls-refd/input1.tex |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/check-all-figs-tbls-refd/ok-may-be-left-unrefd.tex |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/check-biber |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/check-escapes/ok-behind-percent.tex |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/extract |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/fnote-typogr/fail-cleanly.tex |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/fnote-typogr/multi-fnotes.tex |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/fnote-typogr/ok-space-b4-punct.tex |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/lint-bib |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/sort-bib/ice-warner-out.bib |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/sort-bib/ice-warner.bib |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/spelling/Govt/ok-as-adj.tex |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/spelling/includepdf-ok.tex |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/spelling/typo-suggest.tex |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test-zzz-check-pkgs-spelling.R |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_check_all_figs_tbls_refd.R | 18 TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_check_biber.R |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_check_escapes.R | 4 TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_check_labels.R | 2 TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_check_unclosed_parentheses.R |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_commands_used.R |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_extract_LaTeX_argument.R |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_footnote_typography.R | 1 TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_inputs_of.R |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_nth_closing_brace.R | 20 TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_parse_tex.R |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_replace_LaTeX_argument.R | 2 TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_spellcheck.R | 35 + TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_tex_group.R |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/test_validate_bibliography.R | 12 TeXCheckR-0.4.1/TeXCheckR/tests/testthat/validate-bib/dup-key.bib |only TeXCheckR-0.4.1/TeXCheckR/tests/testthat/validate-bib/near-dup-authors.bib |only 96 files changed, 1129 insertions(+), 611 deletions(-)
Title: The Pharmacokinetics (PK) of Multi-Component Drugs Using a
Metabolomics Approach
Description: Poly-PK strategy is a new strategy of pharmacokinetic analysis of multi-component drugs (Guoxiang Xie, Tianlu Chen, Wei Jia, et al. (2012)<doi:10.1021/pr300318m>; Ke Lan, Guoxiang Xie and Wei Jia. (2013)<doi:10.1155/2013/819147>). This package is the first implementation of the Poly-PK strategy with 10 easy-to-use functions.
Author: Mengci Li, Shouli Wang, Guoxiang Xie, Tianlu Chen and Wei Jia
Maintainer: Tianlu Chen <chentianlu@sjtu.edu.cn>
Diff between polyPK versions 1.0.0 dated 2017-07-04 and 2.0.0 dated 2017-10-22
DESCRIPTION | 10 MD5 | 51 NEWS |only R/CorrPlot.R | 6 R/DataPre.R | 155 -- R/GetDiffData.R | 304 ++--- R/ScatPlot.R | 146 ++ data/A.rda |binary data/B.rda |binary data/C.rda |binary data/drugData.rda |binary data/postData.rda |binary data/preData.rda |binary data/simidata.rda |binary inst/doc/my-vignette.R | 8 inst/doc/my-vignette.Rmd | 10 inst/doc/my-vignette.html | 2609 ++++++++++++++++++++++++++++------------------ man/CorrPlot.Rd | 16 man/DataPre.Rd | 24 man/GetAbso.Rd | 18 man/GetDiffData.Rd | 43 man/GetEndo.Rd | 18 man/GetSecdAbso.Rd | 18 man/HeatMap.Rd | 8 man/PKs.Rd | 17 man/ScatPlot.Rd | 21 vignettes/my-vignette.Rmd | 10 27 files changed, 2060 insertions(+), 1432 deletions(-)
Title: Downloading, Reading and Analysing PNADc Microdata
Description: Provides tools for download, read, and analyse the PNADc
household survey from Brazilian Institute of Geography and Statistics.
The data must be downloaded from the official website <https://www.ibge.gov.br/>.
Further analyses must be made using package 'survey'.
Author: Douglas Braga [aut, cre]
Maintainer: Douglas Braga <douglas.braga@ibge.gov.br>
Diff between PNADcIBGE versions 0.2.1 dated 2017-10-13 and 0.3.0 dated 2017-10-22
DESCRIPTION | 6 +- MD5 | 10 +-- R/get_pnadc.R | 141 +++++++++++++++++++++++++++++++++++++++++++------------ R/pnadc_design.R | 33 ++++++++++-- R/read_pnadc.R | 2 man/get_pnadc.Rd | 25 ++++++--- 6 files changed, 163 insertions(+), 54 deletions(-)
Title: Analysis of Metabolomics Data
Description: Metabolomics data are inevitably subject to a component of unwanted
variation, due to factors such as batch effects, matrix effects, and confounding
biological variation. This package is a collection of functions designed to
implement, assess, and choose a suitable normalization method
for a given metabolomics study (De Livera et al (2015) <doi:10.1021/ac502439y>).
Author: Alysha M De Livera, Gavriel Olshansky
Maintainer: Alysha M De Livera <alyshad@unimelb.edu.au>
Diff between NormalizeMets versions 0.21 dated 2017-10-18 and 0.22 dated 2017-10-22
DESCRIPTION | 12 +++++++----- MD5 | 12 +++++++++--- R/ComparePcaPlots.R | 4 ++-- build |only inst |only man/ComparePcaPlots.Rd | 4 ++-- vignettes |only 7 files changed, 20 insertions(+), 12 deletions(-)
Title: Create a Mini Version of CRAN Containing Only Selected Packages
Description: Makes it possible to create an internally consistent
repository consisting of selected packages from CRAN-like repositories.
The user specifies a set of desired packages, and 'miniCRAN' recursively
reads the dependency tree for these packages, then downloads only this
subset. The user can then install packages from this repository directly,
rather than from CRAN. This is useful in production settings, e.g. server
behind a firewall, or remote locations with slow (or zero) Internet access.
Author: Microsoft Corporation [cph],
Andrie de Vries [aut, cre],
Alex Chubaty [ctb]
Maintainer: Andrie de
Vries <apdevries@gmail.com>
Diff between miniCRAN versions 0.2.9 dated 2017-07-21 and 0.2.10 dated 2017-10-22
DESCRIPTION | 21 +- MD5 | 80 ++++---- NEWS | 16 + R/MRAN.R | 10 - R/addPackages.R | 44 +++- R/getCranDescription.R | 22 +- R/helpers.R | 2 R/minicran-package.R | 61 +++--- R/updatePackages.R | 7 R/zzz.R | 18 ++ build/vignette.rds |binary inst/doc/miniCRAN-dependency-graph.html | 204 ++++++++++++++++++++-- inst/doc/miniCRAN-dependency-graph.rmd | 2 inst/doc/miniCRAN-introduction.html | 214 +++++++++++++++++++++--- inst/doc/miniCRAN-non-CRAN-repos.html | 208 +++++++++++++++++++++-- inst/doc/miniCRAN-non-CRAN-repos.rmd | 2 inst/examples/example_addPackageListingGithub.R | 8 inst/examples/example_checkVersions.R | 2 inst/examples/example_getCranDescription.R | 4 inst/examples/example_makeDepGraph.R | 10 - inst/examples/example_makeRepo.R | 4 inst/examples/example_pkgDep.R | 6 inst/examples/example_plot.pkgDepGraph.R | 10 - inst/examples/example_rsynctools.R | 2 inst/examples/example_updatePackages.R | 2 man/addOldPackage.Rd | 2 man/addPackage.Rd | 2 man/addPackageListingGithub.Rd | 8 man/checkVersions.Rd | 2 man/getCranDescription.Rd | 4 man/makeDepGraph.Rd | 10 - man/makeRepo.Rd | 4 man/miniCRAN-package.Rd | 11 + man/pkgDep.Rd | 6 man/plot.pkgDepGraph.Rd | 10 - man/updatePackages.Rd | 2 tests/testthat/test-5-updateRepo.R | 40 ++-- tests/testthat/test-6-getCranDescription.R | 8 tests/testthat/test-7-addGithubPackage.R | 11 - vignettes/miniCRAN-dependency-graph.rmd | 2 vignettes/miniCRAN-non-CRAN-repos.rmd | 2 41 files changed, 833 insertions(+), 250 deletions(-)
Title: Estimate Growth Rates from Experimental Data
Description: A collection of methods to determine growth rates from
experimental data, in particular from batch experiments and
plate reader trials.
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between growthrates versions 0.7.0 dated 2017-09-25 and 0.7.1 dated 2017-10-22
DESCRIPTION | 8 MD5 | 44 - R/all_splines.R | 2 R/fit_growthmodel.R | 4 R/fit_spline.R | 2 R/growthrates-package.R | 6 R/predict.R | 14 build/vignette.rds |binary data/antibiotic.txt.gz |binary data/bactgrowth.txt.gz |binary inst/doc/Introduction.R | 286 +++++------ inst/doc/Introduction.Rmd | 2 inst/doc/Introduction.html | 1112 +++++++++++++++------------------------------ inst/doc/User_models.R | 250 +++++----- inst/doc/User_models.Rmd | 2 inst/doc/User_models.html | 883 +++++++++++++---------------------- man/all_splines.Rd | 2 man/fit_spline.Rd | 2 man/growthrates-package.Rd | 6 man/predict.Rd | 14 vignettes/Introduction.Rmd | 2 vignettes/User_models.Rmd | 2 vignettes/growthrates.bib | 21 23 files changed, 1059 insertions(+), 1605 deletions(-)
Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests. Developed at Cito, The Netherlands, with subsidy from the Dutch Ministry of Education, Culture, and Science.
Author: Gunter Maris, Timo Bechger, Jesse Koops, Ivailo Partchev
Maintainer: Ivailo Partchev <Ivailo.Partchev@cito.nl>
Diff between dexter versions 0.4.4 dated 2017-08-22 and 0.5.1 dated 2017-10-22
dexter-0.4.4/dexter/build/partial.rdb |only dexter-0.4.4/dexter/man/show_booklets.Rd |only dexter-0.4.4/dexter/man/show_design.Rd |only dexter-0.4.4/dexter/man/show_item_properties.Rd |only dexter-0.4.4/dexter/man/show_items.Rd |only dexter-0.4.4/dexter/man/show_person_properties.Rd |only dexter-0.4.4/dexter/man/show_persons.Rd |only dexter-0.5.1/dexter/DESCRIPTION | 13 dexter-0.5.1/dexter/MD5 | 173 - dexter-0.5.1/dexter/NAMESPACE | 39 dexter-0.5.1/dexter/NEWS | 14 dexter-0.5.1/dexter/R/anon.R | 1101 +++--- dexter-0.5.1/dexter/R/d3c.R | 13 dexter-0.5.1/dexter/R/data_selection.R |only dexter-0.5.1/dexter/R/database.R | 320 -- dexter-0.5.1/dexter/R/dexter.R | 1578 ++-------- dexter-0.5.1/dexter/R/dif.R |only dexter-0.5.1/dexter/R/enorm.R |only dexter-0.5.1/dexter/R/individual_differences.R | 46 dexter-0.5.1/dexter/R/interaction_model.R |only dexter-0.5.1/dexter/R/misc.R |only dexter-0.5.1/dexter/R/oplike.R | 208 + dexter-0.5.1/dexter/R/plausible_values.R |only dexter-0.5.1/dexter/R/plots.R |only dexter-0.5.1/dexter/R/predicates.R |only dexter-0.5.1/dexter/R/shine.R |only dexter-0.5.1/dexter/R/tia.R |only dexter-0.5.1/dexter/build/vignette.rds |binary dexter-0.5.1/dexter/data/verbAggrProperties.rda |binary dexter-0.5.1/dexter/data/verbAggrRules.rda |binary dexter-0.5.1/dexter/inst/doc/DIF_vignette.R |only dexter-0.5.1/dexter/inst/doc/DIF_vignette.Rmd |only dexter-0.5.1/dexter/inst/doc/DIF_vignette.html |only dexter-0.5.1/dexter/inst/doc/Plausible_Values.R | 34 dexter-0.5.1/dexter/inst/doc/Plausible_Values.Rmd | 50 dexter-0.5.1/dexter/inst/doc/Plausible_Values.html | 75 dexter-0.5.1/dexter/inst/doc/Test_Individual_differences.R | 24 dexter-0.5.1/dexter/inst/doc/Test_Individual_differences.Rmd | 41 dexter-0.5.1/dexter/inst/doc/Test_Individual_differences.html | 44 dexter-0.5.1/dexter/inst/doc/data_management.R | 4 dexter-0.5.1/dexter/inst/doc/data_management.Rmd | 18 dexter-0.5.1/dexter/inst/doc/data_management.html | 21 dexter-0.5.1/dexter/inst/doc/dexter.R | 108 dexter-0.5.1/dexter/inst/doc/dexter.Rmd | 144 dexter-0.5.1/dexter/inst/doc/dexter.html | 298 - dexter-0.5.1/dexter/inst/doc/profile-plots.R | 26 dexter-0.5.1/dexter/inst/doc/profile-plots.Rmd | 38 dexter-0.5.1/dexter/inst/doc/profile-plots.html | 29 dexter-0.5.1/dexter/man/DIF.Rd | 13 dexter-0.5.1/dexter/man/PISA_item_class.Rd | 2 dexter-0.5.1/dexter/man/ability.Rd | 22 dexter-0.5.1/dexter/man/add_booklet.Rd | 24 dexter-0.5.1/dexter/man/add_item_properties.Rd | 7 dexter-0.5.1/dexter/man/add_test3DC.Rd | 3 dexter-0.5.1/dexter/man/as.data.frame.prms.Rd | 15 dexter-0.5.1/dexter/man/close_project.Rd |only dexter-0.5.1/dexter/man/create3DC.Rd | 12 dexter-0.5.1/dexter/man/design_as_network.Rd | 6 dexter-0.5.1/dexter/man/design_is_connected.Rd | 2 dexter-0.5.1/dexter/man/distractor_plot.Rd | 19 dexter-0.5.1/dexter/man/fit_domains.Rd | 6 dexter-0.5.1/dexter/man/fit_enorm.Rd | 17 dexter-0.5.1/dexter/man/fit_inter.Rd | 12 dexter-0.5.1/dexter/man/get_booklets.Rd |only dexter-0.5.1/dexter/man/get_design.Rd |only dexter-0.5.1/dexter/man/get_item_properties.Rd |only dexter-0.5.1/dexter/man/get_items.Rd |only dexter-0.5.1/dexter/man/get_person_properties.Rd |only dexter-0.5.1/dexter/man/get_persons.Rd |only dexter-0.5.1/dexter/man/get_responses.Rd | 9 dexter-0.5.1/dexter/man/get_rules.Rd |only dexter-0.5.1/dexter/man/get_testscores.Rd | 4 dexter-0.5.1/dexter/man/get_variables.Rd |only dexter-0.5.1/dexter/man/iModels.Rd | 7 dexter-0.5.1/dexter/man/iTIA.Rd | 7 dexter-0.5.1/dexter/man/individual_differences.Rd | 8 dexter-0.5.1/dexter/man/keys_to_rules.Rd | 6 dexter-0.5.1/dexter/man/plausible_values.Rd | 37 dexter-0.5.1/dexter/man/plot.rim.Rd | 14 dexter-0.5.1/dexter/man/predicate_variables.Rd | 13 dexter-0.5.1/dexter/man/print.prms.Rd | 6 dexter-0.5.1/dexter/man/print.rim.Rd | 4 dexter-0.5.1/dexter/man/profile_plot.Rd | 22 dexter-0.5.1/dexter/man/read_oplm_par.Rd |only dexter-0.5.1/dexter/man/show_rules.Rd | 30 dexter-0.5.1/dexter/man/start_new_project.Rd | 10 dexter-0.5.1/dexter/man/start_new_project_from_oplm.Rd | 20 dexter-0.5.1/dexter/man/tia_tables.Rd | 9 dexter-0.5.1/dexter/man/touch_rules.Rd | 11 dexter-0.5.1/dexter/man/verbAggrData.Rd | 2 dexter-0.5.1/dexter/man/verbAggrProperties.Rd | 2 dexter-0.5.1/dexter/man/verbAggrRules.Rd | 4 dexter-0.5.1/dexter/src/elsymean.c | 230 - dexter-0.5.1/dexter/src/elsymean.h | 2 dexter-0.5.1/dexter/src/packagename_init.c | 10 dexter-0.5.1/dexter/src/roger.c | 80 dexter-0.5.1/dexter/src/roger.h | 1 dexter-0.5.1/dexter/vignettes/DIF_vignette.Rmd |only dexter-0.5.1/dexter/vignettes/Plausible_Values.Rmd | 50 dexter-0.5.1/dexter/vignettes/Test_Individual_differences.Rmd | 41 dexter-0.5.1/dexter/vignettes/data_management.Rmd | 18 dexter-0.5.1/dexter/vignettes/dexter.Rmd | 144 dexter-0.5.1/dexter/vignettes/profile-plots.Rmd | 38 103 files changed, 2293 insertions(+), 3165 deletions(-)
Title: Crosstab and Statistical Tests for OII MSc Stats Course
Description: Provides simple crosstab output with optional statistics (e.g., Goodman-Kruskal Gamma, Somers' d, and Kendall's tau-b) as well as two-way and one-way tables. The package is used within the statistics component of the Masters of Science (MSc) in Social Science of the Internet at the Oxford Internet Institute (OII), University of Oxford, but the functions should be useful for general data analysis and especially for analysis of categorical and ordinal data.
Author: Scott Hale [aut, cre], Jon Bright [aut], Grant Blank [aut]
Maintainer: Scott Hale <scott.hale@oii.ox.ac.uk>
Diff between oii versions 1.0.2 dated 2017-09-29 and 1.0.2.1 dated 2017-10-22
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/oii_freq.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Simulation of Ecological (and Other) Dynamic Systems
Description: An object oriented framework to simulate
ecological (and other) dynamic systems. It can be used for
differential equations, individual-based (or agent-based) and other
models as well. The package helps to organize scenarios (to avoid copy
and paste) and aims to improve readability and usability of code.
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between simecol versions 0.8-9 dated 2017-06-12 and 0.8-10 dated 2017-10-22
simecol-0.8-10/simecol/DESCRIPTION | 8 simecol-0.8-10/simecol/MD5 | 15 simecol-0.8-10/simecol/build/vignette.rds |binary simecol-0.8-10/simecol/inst/NEWS | 431 - simecol-0.8-10/simecol/inst/doc/a-simecol-introduction.Rnw | 3105 ++++++------ simecol-0.8-10/simecol/inst/doc/a-simecol-introduction.pdf |binary simecol-0.8-10/simecol/inst/doc/b-simecol-howtos.pdf |binary simecol-0.8-10/simecol/vignettes/a-simecol-introduction.Rnw | 3105 ++++++------ simecol-0.8-9/simecol/vignettes/a4wide.sty |only 9 files changed, 3338 insertions(+), 3326 deletions(-)
Title: Web Crawler and Scraper
Description: Performs parallel web crawling and web scraping. It is designed to crawl, parse and store web pages to produce data that can be directly used for analysis application. For details see Khalil and Fakir (2017) <DOI:10.1016/j.softx.2017.04.004>.
Author: Salim Khalil [aut, cre]
Maintainer: Salim Khalil <khalilsalim1@gmail.com>
Diff between Rcrawler versions 0.1.3 dated 2017-10-12 and 0.1.4 dated 2017-10-22
DESCRIPTION | 6 - MD5 | 14 +-- R/LinkExtractor.R | 19 +---- R/Rcrawlerp.R | 183 +++++++++++++++++++++++++++++++++++--------------- R/contentscraper.R | 41 ++++++----- R/tools.R | 15 ++++ man/ContentScraper.Rd | 5 + man/Rcrawler.Rd | 27 ++++++- 8 files changed, 210 insertions(+), 100 deletions(-)
Title: Scoring Modeling and Optimal Binning
Description: A set of functions to build a scoring model from beginning to end, leading the user
to follow an efficient and organized development process, reducing significantly the time
spent on data exploration, variable selection, feature engineering and binning, among other
recurrent tasks.
The package also incorporates scaling capabilities that transforms logistic coefficients
into points for a better business understanding and calculates classic performance metrics
of a classification model.
Author: Herman Jopia
Maintainer: Herman Jopia <hjopia@gmail.com>
Diff between smbinning versions 0.3 dated 2016-06-20 and 0.4 dated 2017-10-22
DESCRIPTION | 26 MD5 | 33 R/smbinning.R | 1888 +++++++++++++++++++++++++++++++---------- data/chileancredit.RData |binary man/chileancredit.Rd | 46 man/smbinning.Rd | 25 man/smbinning.custom.Rd | 38 man/smbinning.eda.Rd | 41 man/smbinning.factor.Rd | 35 man/smbinning.factor.custom.Rd |only man/smbinning.factor.gen.Rd | 32 man/smbinning.gen.Rd | 34 man/smbinning.metrics.Rd |only man/smbinning.plot.Rd | 24 man/smbinning.scaling.Rd |only man/smbinning.scoring.gen.Rd |only man/smbinning.scoring.sql.Rd |only man/smbinning.sql.Rd | 27 man/smbinning.sumiv.Rd | 21 man/smbinning.sumiv.plot.Rd | 24 20 files changed, 1656 insertions(+), 638 deletions(-)
Title: Bayesian Variable Selection and Model Averaging using Bayesian
Adaptive Sampling
Description: Package for Bayesian Variable Selection and Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<DOI:10.1198/016214507000001337>
for linear models or mixtures of g-priors in GLMs of Li and Clyde (2015)
<arXiv:1503.06913>. Other model
selection criteria include AIC, BIC and Empirical Bayes estimates of g.
Sampling probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an efficient MCMC algorithm
samples models using the BAS tree structure as an efficient hash table.
Uniform priors over all models or beta-binomial prior distributions on
model size are allowed, and for large p truncated priors on the model
space may be used. The user may force variables to always be included.
Details behind the sampling algorithm are provided in
Clyde, Ghosh and Littman (2010) <DOI:10.1198/jcgs.2010.09049>.
This material is based upon work supported by the National Science
Foundation under Grant DMS-1106891. Any opinions, findings, and
conclusions or recommendations expressed in this material are those of
the author(s) and do not necessarily reflect the views of the
National Science Foundation.
Author: Merlise Clyde [aut, cre, cph],
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>
Diff between BAS versions 1.4.6 dated 2017-05-26 and 1.4.7 dated 2017-10-22
BAS-1.4.6/BAS/inst/doc/BAS.R |only BAS-1.4.6/BAS/inst/doc/BAS.Rmd |only BAS-1.4.6/BAS/inst/doc/BAS.html |only BAS-1.4.6/BAS/src/bas-glm.h |only BAS-1.4.6/BAS/src/betapriorfamily.h |only BAS-1.4.6/BAS/src/family.h |only BAS-1.4.6/BAS/src/isnan.c |only BAS-1.4.6/BAS/src/posisearch.c |only BAS-1.4.6/BAS/src/powi.c |only BAS-1.4.6/BAS/src/round.c |only BAS-1.4.6/BAS/src/sampling.h |only BAS-1.4.7/BAS/DESCRIPTION | 11 - BAS-1.4.7/BAS/MD5 | 118 +++++------ BAS-1.4.7/BAS/NEWS.md | 12 + BAS-1.4.7/BAS/R/CholRegPSD.R |only BAS-1.4.7/BAS/R/ZS-lik.R |only BAS-1.4.7/BAS/R/bas.R | 177 +++++++++++++---- BAS-1.4.7/BAS/R/diagnostics.R | 18 - BAS-1.4.7/BAS/R/interactions.R | 14 + BAS-1.4.7/BAS/build/vignette.rds |binary BAS-1.4.7/BAS/inst/doc/BAS-vignette.R | 2 BAS-1.4.7/BAS/inst/doc/BAS-vignette.Rmd | 15 - BAS-1.4.7/BAS/inst/doc/BAS-vignette.html | 305 ++++++++++++++++++----------- BAS-1.4.7/BAS/man/BAS.Rd | 3 BAS-1.4.7/BAS/man/bas.lm.Rd | 166 ++++++++++++---- BAS-1.4.7/BAS/man/coef.Rd | 3 BAS-1.4.7/BAS/man/confint.coef.Rd | 2 BAS-1.4.7/BAS/man/confint.pred.Rd | 2 BAS-1.4.7/BAS/man/diagnostics.Rd | 12 - BAS-1.4.7/BAS/man/fitted.Rd | 1 BAS-1.4.7/BAS/man/force.heredity.bas.Rd | 14 + BAS-1.4.7/BAS/man/image.Rd | 3 BAS-1.4.7/BAS/man/predict.Rd | 3 BAS-1.4.7/BAS/man/predict.basglm.Rd | 3 BAS-1.4.7/BAS/man/summary.Rd | 3 BAS-1.4.7/BAS/man/update.Rd | 3 BAS-1.4.7/BAS/src/ZS.approx.null.np.c | 271 +++++++++++++++++++++++++- BAS-1.4.7/BAS/src/amcmc.c | 288 +++++++++++++-------------- BAS-1.4.7/BAS/src/bas.h |only BAS-1.4.7/BAS/src/bayesglm.c | 72 +++--- BAS-1.4.7/BAS/src/bayesreg.c | 321 +++++++++++++++++++------------ BAS-1.4.7/BAS/src/betapriorfamily.c | 131 ++++++------ BAS-1.4.7/BAS/src/cch.c | 12 - BAS-1.4.7/BAS/src/deterministic.c | 90 ++++---- BAS-1.4.7/BAS/src/family.c | 81 +++---- BAS-1.4.7/BAS/src/gamma.c | 19 + BAS-1.4.7/BAS/src/gglm.h | 25 -- BAS-1.4.7/BAS/src/glm_deterministic.c | 35 +-- BAS-1.4.7/BAS/src/glm_fit.c | 39 +-- BAS-1.4.7/BAS/src/glm_lpy.c | 65 ++---- BAS-1.4.7/BAS/src/glm_mcmc.c | 5 BAS-1.4.7/BAS/src/glm_mcmcbas.c | 85 +++----- BAS-1.4.7/BAS/src/glm_sampleworep.c | 64 ++---- BAS-1.4.7/BAS/src/hg.approx.null.np.c | 13 - BAS-1.4.7/BAS/src/hyp2f1.c | 34 +-- BAS-1.4.7/BAS/src/hypergeometric1F1.c | 58 +---- BAS-1.4.7/BAS/src/mcmc.c | 158 +++++++-------- BAS-1.4.7/BAS/src/mcmc_new.c | 2 BAS-1.4.7/BAS/src/mcmcbas.c | 182 ++++++++--------- BAS-1.4.7/BAS/src/mem.c | 10 BAS-1.4.7/BAS/src/probabilities.c | 35 +-- BAS-1.4.7/BAS/src/r_multi_norm.c | 29 +- BAS-1.4.7/BAS/src/r_trunc_gamma.c | 20 - BAS-1.4.7/BAS/src/sampleworep.c | 2 BAS-1.4.7/BAS/src/sampleworep_new.c | 2 BAS-1.4.7/BAS/src/tree-structures.c | 18 - BAS-1.4.7/BAS/vignettes/BAS-vignette.Rmd | 15 - 67 files changed, 1822 insertions(+), 1249 deletions(-)
Title: Manage Sub-Processes in R
Description: Create and handle multiple sub-processes in R, exchange
data over standard input and output streams, control their life cycle.
Author: Lukasz Bartnik [aut, cre]
Maintainer: Lukasz Bartnik <l.bartnik@gmail.com>
Diff between subprocess versions 0.8.1 dated 2017-10-06 and 0.8.2 dated 2017-10-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test-package.R | 5 ++--- 4 files changed, 12 insertions(+), 9 deletions(-)
Title: Succinct and Correct Statistical Summaries for Reports
Description: Succinctly and correctly format statistical summaries of
various models and tests (F-test, Chi-Sq-test, Fisher-test, T-test, and rank-significance). The main purpose is unified reporting and planning
of experimental results, working around issue such as the difficulty of
extracting model summary facts (such as with 'lm'/'glm'). This package also
includes empirical tests, such as bootstrap estimates.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between sigr versions 0.2.1 dated 2017-10-15 and 0.2.2 dated 2017-10-22
DESCRIPTION | 12 +++---- MD5 | 17 +++++------ NAMESPACE | 1 NEWS.md | 5 +++ R/FisherTest.R | 55 +++++++++++++++++++++++++++++++++++ R/TTest.R | 12 +++---- inst/doc/lmExample.html | 14 ++++----- inst/doc/sigrFormatting.html | 60 +++++++++++++++++++-------------------- man/wrapFisherTest.data.frame.Rd | 2 - man/wrapFisherTest.table.Rd |only 10 files changed, 119 insertions(+), 59 deletions(-)
Title: Illustrate the Flow of Information or Material
Description: Plots that illustrate the flow of information or material.
Author: Gábor Csárdi, January Weiner
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between sankey versions 1.0.0 dated 2015-12-18 and 1.0.2 dated 2017-10-22
sankey-1.0.0/sankey/README.md |only sankey-1.0.0/sankey/inst/README.md |only sankey-1.0.2/sankey/DESCRIPTION | 23 ++++++----- sankey-1.0.2/sankey/MD5 | 17 ++++---- sankey-1.0.2/sankey/R/make.R | 41 +++++++++++++++++++-- sankey-1.0.2/sankey/inst/NEWS.md | 4 ++ sankey-1.0.2/sankey/inst/README.Rmd | 12 +++--- sankey-1.0.2/sankey/inst/README.markdown |only sankey-1.0.2/sankey/man/make_sankey.Rd | 35 +++++++++++++++++ sankey-1.0.2/sankey/man/sankey.Rd | 4 +- sankey-1.0.2/sankey/tests/testthat/test-curveseg.R | 16 +++----- 11 files changed, 112 insertions(+), 40 deletions(-)
Title: 'ECOS' Plugin for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the Embedded Conic Solver ('ECOS') for solving conic optimization problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.ecos versions 0.2-5 dated 2017-05-17 and 0.3-0 dated 2017-10-22
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/plugin.R | 2 +- tests/test_ecos.R | 1 + 4 files changed, 9 insertions(+), 8 deletions(-)
More information about ROI.plugin.ecos at CRAN
Permanent link
Title: Reading Financial Reports from Bovespa's ITR System
Description: Reads quarterly and annual financial reports including assets, liabilities, income and cash flow statements from Bovespa's ITR (informacoes trimestrais) system <http://www.bmfbovespa.com.br/en_us/products/listed-equities-and-derivatives/equities/listed-companies.htm>.
The ITR/DFP system is a web based interface for all financial reports of companies traded at Bovespa. The package is especially designed for large scale data importation, keeping a tabular (long) structure for easier processing.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetITRData versions 0.5 dated 2017-09-30 and 0.6 dated 2017-10-22
DESCRIPTION | 14 MD5 | 49 - NAMESPACE | 1 NEWS.md | 12 R/gitrd_Bovespa_Data.R |only R/gitrd_GetITRData.R | 123 ++-- R/gitrd_export_ITR_Data.R | 66 +- R/gitrd_get_info_companies.R | 51 + R/gitrd_read_zip_file.R | 114 ++-- R/gitrd_utils.R | 90 ++- README.md | 2 build/vignette.rds |binary inst/doc/gitrd-vignette-introduction.R | 37 - inst/doc/gitrd-vignette-introduction.Rmd | 54 + inst/doc/gitrd-vignette-introduction.html | 824 ++++++++++------------------- inst/extdata/ExampleReport_Petrobras.RData |binary man/gitrd.GetITRData.Rd | 21 man/gitrd.convert.to.wide.Rd | 6 man/gitrd.fix.dataframes.Rd | 10 man/gitrd.get.bovespa.data.Rd |only man/gitrd.get.info.companies.Rd | 9 man/gitrd.read.fwf.file.Rd | 6 man/gitrd.read.zip.file.Rd | 7 man/gitrd.read.zip.file.type.1.Rd | 5 man/gitrd.read.zip.file.type.2.Rd | 5 vignettes/MyExcelData.xlsx |only vignettes/gitrd-vignette-introduction.Rmd | 54 + 27 files changed, 805 insertions(+), 755 deletions(-)
Title: Debug R Packages
Description: Specify debug messages as special string constants, and
control debugging of packages via environment variables.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between debugme versions 1.0.2 dated 2017-03-01 and 1.1.0 dated 2017-10-22
debugme-1.0.2/debugme/README.md |only debugme-1.1.0/debugme/DESCRIPTION | 14 +- debugme-1.1.0/debugme/MD5 | 29 ++--- debugme-1.1.0/debugme/NEWS.md | 13 ++ debugme-1.1.0/debugme/R/colors.R | 2 debugme-1.1.0/debugme/R/debug.R | 59 ++++++++++ debugme-1.1.0/debugme/R/instrument.R | 52 ++++++--- debugme-1.1.0/debugme/R/package.R | 66 ++++++++++-- debugme-1.1.0/debugme/inst/README.Rmd |only debugme-1.1.0/debugme/inst/README.markdown |only debugme-1.1.0/debugme/man/debug.Rd | 1 debugme-1.1.0/debugme/man/debugme.Rd | 24 ++++ debugme-1.1.0/debugme/man/handle_dynamic_code.Rd | 1 debugme-1.1.0/debugme/tests/testthat/test-colors.R | 2 debugme-1.1.0/debugme/tests/testthat/test-debug.R | 93 ++++++++++++++--- debugme-1.1.0/debugme/tests/testthat/test-instrument.R | 27 ++++ debugme-1.1.0/debugme/tests/testthat/test-package.R | 45 +++++++- 17 files changed, 358 insertions(+), 70 deletions(-)
Title: Automated Cytometry Gating and Annotation
Description: Given the hypothesis of a bimodal distribution of cells for
each marker, the algorithm constructs a binary tree, the nodes of which are
subpopulations of cells. At each node, observed cells and markers are modeled
by both a family of normal distributions and a family of bimodal normal mixture
distributions. Splitting is done according to a normalized difference of AIC
between the two families.
Author: Chariff Alkhassim, Boris Hejblum
Maintainer: Alkhassim Chariff <chariff.alkhassim@gmail.com>
Diff between cytometree versions 1.0.1 dated 2017-07-03 and 1.1.1 dated 2017-10-22
cytometree-1.0.1/cytometree/R/data.r |only cytometree-1.0.1/cytometree/data/DLBCL.rda |only cytometree-1.0.1/cytometree/src/init.cpp |only cytometree-1.1.1/cytometree/DESCRIPTION | 30 - cytometree-1.1.1/cytometree/MD5 | 57 +- cytometree-1.1.1/cytometree/NAMESPACE | 1 cytometree-1.1.1/cytometree/NEWS.md |only cytometree-1.1.1/cytometree/R/Annotation.R | 348 ++++++++++++++---- cytometree-1.1.1/cytometree/R/CytEM.R | 4 cytometree-1.1.1/cytometree/R/CytomeTree.R | 97 +++-- cytometree-1.1.1/cytometree/R/DLBCL.r |only cytometree-1.1.1/cytometree/R/GaussMix2.r |only cytometree-1.1.1/cytometree/R/HIPC.r |only cytometree-1.1.1/cytometree/R/RcppExports.R | 12 cytometree-1.1.1/cytometree/R/RetrievePops.r | 6 cytometree-1.1.1/cytometree/R/TreeAnnot.r | 35 + cytometree-1.1.1/cytometree/R/cytometree-package.R | 10 cytometree-1.1.1/cytometree/R/plot_nodes.R | 6 cytometree-1.1.1/cytometree/README.md |only cytometree-1.1.1/cytometree/build |only cytometree-1.1.1/cytometree/data/DLBCL.RData |only cytometree-1.1.1/cytometree/data/HIPC.RData |only cytometree-1.1.1/cytometree/inst/CITATION | 8 cytometree-1.1.1/cytometree/inst/doc |only cytometree-1.1.1/cytometree/man/Annotation.Rd | 32 + cytometree-1.1.1/cytometree/man/CytomeTree.Rd | 92 +++- cytometree-1.1.1/cytometree/man/DLBCL.Rd | 6 cytometree-1.1.1/cytometree/man/FmeasureC.Rd | 3 cytometree-1.1.1/cytometree/man/FmeasureC_no0.Rd | 5 cytometree-1.1.1/cytometree/man/GaussMix2.Rd |only cytometree-1.1.1/cytometree/man/HIPC.Rd |only cytometree-1.1.1/cytometree/man/RetrievePops.Rd | 8 cytometree-1.1.1/cytometree/man/cytometree-package.Rd | 10 cytometree-1.1.1/cytometree/src/FmeasureC.cpp | 22 - cytometree-1.1.1/cytometree/src/RcppExports.cpp | 33 + cytometree-1.1.1/cytometree/vignettes |only 36 files changed, 589 insertions(+), 236 deletions(-)
Title: Bayesian Spectral Analysis Models using Gaussian Process Priors
Description: Contains functions to perform Bayesian inference
using a spectral analysis of Gaussian process priors.
Gaussian processes are represented with a Fourier series
based on cosine basis functions. Currently the package
includes parametric linear models, partial linear additive
models with/without shape restrictions, generalized linear
additive models with/without shape restrictions, and
density estimation model. To maximize computational
efficiency, the actual Markov chain Monte Carlo sampling
for each model is done using codes written in FORTRAN 90.
This software has been developed using funding supported by
Basic Science Research Program through the National Research
Foundation of Korea (NRF) funded by the Ministry of Education
(no. NRF-2016R1D1A1B03932178 and no. NRF-2017R1D1A3B03035235).
Author: Seongil Jo [aut, cre],
Taeryon Choi [aut],
Beomjo Park [aut, cre],
Peter J. Lenk [ctb]
Maintainer: Beomjo Park <beomjo@korea.ac.kr>
Diff between bsamGP versions 1.0.1 dated 2017-08-06 and 1.1.0 dated 2017-10-22
bsamGP-1.0.1/bsamGP/R/function.shape.R |only bsamGP-1.0.1/bsamGP/man/function.shape.Rd |only bsamGP-1.1.0/bsamGP/DESCRIPTION | 12 bsamGP-1.1.0/bsamGP/MD5 | 87 ++-- bsamGP-1.1.0/bsamGP/NAMESPACE | 24 - bsamGP-1.1.0/bsamGP/R/blq.R | 40 - bsamGP-1.1.0/bsamGP/R/blr.R | 34 - bsamGP-1.1.0/bsamGP/R/bsaq.R | 62 -- bsamGP-1.1.0/bsamGP/R/bsaqdpm.R | 62 -- bsamGP-1.1.0/bsamGP/R/bsar.R | 62 -- bsamGP-1.1.0/bsamGP/R/bsardpm.R | 85 ---- bsamGP-1.1.0/bsamGP/R/fitted.blm.R | 79 ++- bsamGP-1.1.0/bsamGP/R/fs.R |only bsamGP-1.1.0/bsamGP/R/gblr.R | 82 +-- bsamGP-1.1.0/bsamGP/R/gbsar.R | 126 ++---- bsamGP-1.1.0/bsamGP/R/hidden.R |only bsamGP-1.1.0/bsamGP/R/plot.bsad.R |only bsamGP-1.1.0/bsamGP/R/plot.fitted.bsam.R | 346 ++++++++++------ bsamGP-1.1.0/bsamGP/R/plot.fitted.bsamdpm.R | 243 ++++++----- bsamGP-1.1.0/bsamGP/R/predict.blm.R |only bsamGP-1.1.0/bsamGP/R/predict.bsam.R |only bsamGP-1.1.0/bsamGP/R/predict.bsamdpm.R |only bsamGP-1.1.0/bsamGP/R/print.blm.R | 123 +---- bsamGP-1.1.0/bsamGP/R/print.bsad.R | 210 +--------- bsamGP-1.1.0/bsamGP/R/print.bsam.R | 303 ++------------ bsamGP-1.1.0/bsamGP/R/print.bsamdpm.R | 376 +---------------- bsamGP-1.1.0/bsamGP/R/print.summary.blm.R |only bsamGP-1.1.0/bsamGP/R/print.summary.bsad.R |only bsamGP-1.1.0/bsamGP/R/print.summary.bsam.R |only bsamGP-1.1.0/bsamGP/R/print.summary.bsamdpm.R |only bsamGP-1.1.0/bsamGP/R/summary.blm.R |only bsamGP-1.1.0/bsamGP/R/summary.bsad.R |only bsamGP-1.1.0/bsamGP/R/summary.bsam.R |only bsamGP-1.1.0/bsamGP/R/summary.bsamdpm.R |only bsamGP-1.1.0/bsamGP/README.md |only bsamGP-1.1.0/bsamGP/man/blq.Rd | 243 +++++------ bsamGP-1.1.0/bsamGP/man/blr.Rd | 115 ++--- bsamGP-1.1.0/bsamGP/man/bsad.Rd | 70 ++- bsamGP-1.1.0/bsamGP/man/bsaq.Rd | 99 ++-- bsamGP-1.1.0/bsamGP/man/bsaqdpm.Rd | 436 ++++++++++---------- bsamGP-1.1.0/bsamGP/man/bsar.Rd | 185 ++++---- bsamGP-1.1.0/bsamGP/man/bsardpm.Rd | 48 +- bsamGP-1.1.0/bsamGP/man/fitted.blm.Rd | 9 bsamGP-1.1.0/bsamGP/man/fs.Rd |only bsamGP-1.1.0/bsamGP/man/gblr.Rd | 160 +++---- bsamGP-1.1.0/bsamGP/man/gbsar.Rd | 523 +++++++++++++------------ bsamGP-1.1.0/bsamGP/man/plasma.Rd | 6 bsamGP-1.1.0/bsamGP/man/plot.bsad.Rd |only bsamGP-1.1.0/bsamGP/man/plot.fitted.bsam.Rd | 3 bsamGP-1.1.0/bsamGP/man/plot.fitted.bsamdpm.Rd | 3 bsamGP-1.1.0/bsamGP/man/predict.blm.Rd |only bsamGP-1.1.0/bsamGP/man/predict.bsam.Rd |only bsamGP-1.1.0/bsamGP/man/predict.bsamdpm.Rd |only bsamGP-1.1.0/bsamGP/src/Makevars | 17 bsamGP-1.1.0/bsamGP/src/gblogitMH.f90 |only bsamGP-1.1.0/bsamGP/src/gbsarlogitMH.f90 |only bsamGP-1.1.0/bsamGP/src/predictbsam.f90 |only 57 files changed, 1824 insertions(+), 2449 deletions(-)
Title: Bridge Sampling for Marginal Likelihoods and Bayes Factors
Description: Provides functions for estimating marginal likelihoods, Bayes
factors, posterior model probabilities, and normalizing constants in general,
via different versions of bridge sampling (Meng & Wong, 1996, <http://
www3.stat.sinica.edu.tw/statistica/j6n4/j6n43/j6n43.htm>).
Author: Quentin F. Gronau [aut, cre] (<https://orcid.org/0000-0001-5510-6943>),
Henrik Singmann [aut] (<https://orcid.org/0000-0002-4842-3657>),
Jonathan J. Forster [ctb],
Eric-Jan Wagenmakers [ths],
The JASP Team [ctb],
Jiqiang Guo [ctb],
Jonah Gabry [ctb],
Ben Goodrich [ctb]
Maintainer: Quentin F. Gronau <Quentin.F.Gronau@gmail.com>
Diff between bridgesampling versions 0.2-2 dated 2017-06-27 and 0.3-0 dated 2017-10-22
bridgesampling-0.2-2/bridgesampling/tests/testthat/test-bridge_sampler_normal.R |only bridgesampling-0.2-2/bridgesampling/tests/testthat/test-bridge_sampler_normal_Rcpp.R |only bridgesampling-0.2-2/bridgesampling/tests/testthat/test-bridge_sampler_normal_Rcpp_parallel.R |only bridgesampling-0.2-2/bridgesampling/tests/testthat/test-bridge_sampler_normal_parallel.R |only bridgesampling-0.3-0/bridgesampling/DESCRIPTION | 39 - bridgesampling-0.3-0/bridgesampling/MD5 | 73 +- bridgesampling-0.3-0/bridgesampling/NAMESPACE | 7 bridgesampling-0.3-0/bridgesampling/R/bf.R | 43 - bridgesampling-0.3-0/bridgesampling/R/bridge_sampler.R | 355 ++++++++-- bridgesampling-0.3-0/bridgesampling/R/bridge_sampler_internals.R | 29 bridgesampling-0.3-0/bridgesampling/R/bridge_sampler_normal.R | 63 + bridgesampling-0.3-0/bridgesampling/R/bridge_sampler_warp3.R | 63 + bridgesampling-0.3-0/bridgesampling/R/error_measures.R | 6 bridgesampling-0.3-0/bridgesampling/R/ier-data.R |only bridgesampling-0.3-0/bridgesampling/R/post_prob.R | 2 bridgesampling-0.3-0/bridgesampling/R/turtles-data.R |only bridgesampling-0.3-0/bridgesampling/build/vignette.rds |binary bridgesampling-0.3-0/bridgesampling/data |only bridgesampling-0.3-0/bridgesampling/inst/doc/bridgesampling_example_jags.R | 26 bridgesampling-0.3-0/bridgesampling/inst/doc/bridgesampling_example_jags.Rmd | 45 - bridgesampling-0.3-0/bridgesampling/inst/doc/bridgesampling_example_jags.html | 65 - bridgesampling-0.3-0/bridgesampling/inst/doc/bridgesampling_example_stan.html | 20 bridgesampling-0.3-0/bridgesampling/inst/doc/bridgesampling_paper.pdf |only bridgesampling-0.3-0/bridgesampling/inst/doc/bridgesampling_paper.pdf.asis |only bridgesampling-0.3-0/bridgesampling/inst/doc/bridgesampling_stan_ttest.R | 2 bridgesampling-0.3-0/bridgesampling/inst/doc/bridgesampling_stan_ttest.Rmd | 2 bridgesampling-0.3-0/bridgesampling/inst/doc/bridgesampling_stan_ttest.html | 26 bridgesampling-0.3-0/bridgesampling/inst/doc/bridgesampling_tutorial.pdf |binary bridgesampling-0.3-0/bridgesampling/man/bf.Rd | 22 bridgesampling-0.3-0/bridgesampling/man/bridge_sampler.Rd | 151 ++-- bridgesampling-0.3-0/bridgesampling/man/error_measures.Rd | 6 bridgesampling-0.3-0/bridgesampling/man/ier.Rd |only bridgesampling-0.3-0/bridgesampling/man/post_prob.Rd | 2 bridgesampling-0.3-0/bridgesampling/man/turtles.Rd |only bridgesampling-0.3-0/bridgesampling/tests/testthat/test-bf_print_method.R | 7 bridgesampling-0.3-0/bridgesampling/tests/testthat/test-bridge_sampler.R |only bridgesampling-0.3-0/bridgesampling/tests/testthat/test-bridge_sampler_Rcpp.R |only bridgesampling-0.3-0/bridgesampling/tests/testthat/test-bridge_sampler_Rcpp_parallel.R |only bridgesampling-0.3-0/bridgesampling/tests/testthat/test-bridge_sampler_mcmc.list.R |only bridgesampling-0.3-0/bridgesampling/tests/testthat/test-bridge_sampler_parallel.R |only bridgesampling-0.3-0/bridgesampling/tests/testthat/test-stan_bridge_sampler_basic.R | 2 bridgesampling-0.3-0/bridgesampling/tests/testthat/test-stan_bridge_sampler_bugs.R | 85 -- bridgesampling-0.3-0/bridgesampling/tests/testthat/test-stanreg_bridge_sampler_basic.R |only bridgesampling-0.3-0/bridgesampling/vignettes/bridgesampling_example_jags.Rmd | 45 - bridgesampling-0.3-0/bridgesampling/vignettes/bridgesampling_paper.pdf.asis |only bridgesampling-0.3-0/bridgesampling/vignettes/bridgesampling_stan_ttest.Rmd | 2 46 files changed, 777 insertions(+), 411 deletions(-)
More information about bridgesampling at CRAN
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Title: Miscellaneous R Functions and Aliases
Description: Provides utility functions for, and drawing on, the 'data.table' package. The package also collates useful miscellaneous functions extending base R not available elsewhere. The name is a portmanteau of 'utils' and the author.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutils versions 0.8.0 dated 2017-09-12 and 0.9.0 dated 2017-10-22
DESCRIPTION | 12 ++- MD5 | 43 ++++++++------ NAMESPACE | 1 NEWS.md | 7 ++ R/bearing.R |only R/coalesce.R | 10 +-- R/find_pattern.R |only R/if_else.R | 41 +++++++------ R/mutate_other.R | 4 - R/notin.R | 2 R/pin.R | 2 R/print_transpose_data.table.R |only R/set_cols_first.R | 2 build |only inst |only man/find_pattern_in.Rd |only man/grapes-pin-grapes.Rd | 2 man/if_else.Rd | 12 +-- man/set_cols_first.Rd | 2 tests/testthat/test_bearing.R |only tests/testthat/test_coalesce.R | 2 tests/testthat/test_drop_cols.R | 3 tests/testthat/test_if_else.R | 122 +++++++++++++++++++++++++++++++++++++--- tests/testthat/test_notin.R | 4 - vignettes |only 25 files changed, 202 insertions(+), 69 deletions(-)
Title: R Interface to 'Kokudo Suuchi' API
Description: Provides an interface to 'Kokudo Suuchi' API, the GIS data service of the Japanese government.
See <http://nlftp.mlit.go.jp/ksj-e/index.html> for more information.
Author: Hiroaki Yutani [aut, cre]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between kokudosuuchi versions 0.2.0 dated 2016-11-07 and 0.4.0 dated 2017-10-22
DESCRIPTION | 20 - MD5 | 42 ++- NAMESPACE | 2 NEWS.md |only R/data.R |only R/getKSJData.R | 144 +++++++++-- R/getKSJSummary.R | 4 R/getKSJURL.R | 10 R/kokudosuuchi-package.R | 1 R/translateKSJData.R |only R/util.R | 8 README.md | 312 +++++++++++++++--------- data/KSJMetadata_code.rda |only data/KSJMetadata_code_correspondence_tables.rda |only data/KSJMetadata_code_year_cols.rda |only data/KSJMetadata_description_url.rda |only man/KSJMetadata_code.Rd |only man/KSJMetadata_description_url.Rd |only man/KSJPrefCodes.Rd | 9 man/choose_prefecture_code.Rd | 1 man/getKSJData.Rd | 28 +- man/getKSJSummary.Rd | 5 man/getKSJURL.Rd | 9 man/kokudosuuchi.Rd | 1 tests/testthat/test-getData.R | 82 ++++++ tests/testthat/test-is_file.R |only tests/testthat/test-suggest_useful_links.R |only tests/testthat/test-translateData.R |only 28 files changed, 495 insertions(+), 183 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-12 2.1.2
Title: 'SCS' Plug-in for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the 'SCS' solver for solving convex cone problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.scs versions 0.2-5 dated 2017-05-17 and 0.3-0 dated 2017-10-22
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/plugin.R | 5 +++-- tests/test_scs.R | 1 + 4 files changed, 12 insertions(+), 10 deletions(-)
More information about ROI.plugin.scs at CRAN
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Title: 'optimx' Plug-in for the 'R' Optimization Infrastructure
Description: Enhances the R Optimization Infrastructure ('ROI') package
with the 'optimx' package.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.optimx versions 0.2-5 dated 2017-05-17 and 0.3-0 dated 2017-10-22
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/solve.R | 3 +++ man/Example_01.Rd | 4 ++-- tests/test_optimx.R | 3 ++- 5 files changed, 16 insertions(+), 12 deletions(-)
More information about ROI.plugin.optimx at CRAN
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Title: 'nloptr' Plug-in for the 'R' Optimization Infrastructure
Description: Enhances the R Optimization Infrastructure ('ROI') package
with the 'NLopt' solver for solving nonlinear optimization problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.nloptr versions 0.2-5 dated 2017-05-17 and 0.3-0 dated 2017-10-22
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- man/Example_01.Rd | 7 ++++--- tests/test_nloptr.R | 11 ++++++----- 4 files changed, 18 insertions(+), 16 deletions(-)
More information about ROI.plugin.nloptr at CRAN
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Title: 'Multi-Solution' Binary Linear Problem Plug-in for the 'R'
Optimization Interface
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the possibility to obtain multiple solutions for linear
problems with binary variables. The main function is copied
(with small modifications) from the relations package.
Author: Kurt Hornik [aut],
David Meyer [aut],
Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.msbinlp versions 0.2-5 dated 2017-05-17 and 0.3-0 dated 2017-10-22
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NAMESPACE | 2 +- R/plugin.R | 27 ++++++++++++++++++++++++--- R/zzz.R | 1 - tests/test_msbinlp.R | 5 ++++- 6 files changed, 40 insertions(+), 16 deletions(-)
More information about ROI.plugin.msbinlp at CRAN
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Title: 'lp_solve' Plugin for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the 'lp_solve' solver.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.lpsolve versions 0.2-5 dated 2017-05-17 and 0.3-0 dated 2017-10-22
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- R/zzz.R | 6 +++--- tests/test_lp_solve.R | 49 +++++++++++++++++++++++++++++++++++++++++++++++++ 4 files changed, 61 insertions(+), 11 deletions(-)
More information about ROI.plugin.lpsolve at CRAN
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Title: 'alabama' Plug-in for the 'R' Optimization Infrastructure
Description: Enhances the R Optimization Infrastructure ('ROI') package
with the 'alabama' solver for solving nonlinear optimization problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.alabama versions 0.2-5 dated 2017-05-17 and 0.3-0 dated 2017-10-22
DESCRIPTION | 10 ++++----- MD5 | 11 +++++----- R/solve.R | 38 ++++++++++++++++++++---------------- R/status_codes.R | 3 -- R/zzz.R | 53 +++++++++++++++++++++++++++++++++++++-------------- man/Example_03.Rd |only tests/test_alabama.R | 3 +- 7 files changed, 74 insertions(+), 44 deletions(-)
More information about ROI.plugin.alabama at CRAN
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