Title: Create Interactive Trees with the 'jQuery' 'jsTree' Plugin
Description: Create and customize interactive trees using the 'jQuery' 'jsTree' <https://www.jstree.com/>
plugin library and the 'htmlwidgets' package. These trees can be used
directly from the R console, from 'RStudio', in Shiny apps and R Markdown documents.
Author: Jonathan Sidi [aut, cre]
Maintainer: Jonathan Sidi <yonis@metrumrg.com>
Diff between jsTree versions 1.0 dated 2017-10-06 and 1.0.1 dated 2017-10-23
DESCRIPTION | 8 +++--- MD5 | 8 +++--- R/state_bird-data.R | 2 - README.md | 4 ++- inst/htmlwidgets/jsTree.js | 59 +++++++++++++-------------------------------- 5 files changed, 30 insertions(+), 51 deletions(-)
Title: Interface with the United Nations Comtrade API
Description: Interface with and extract data from the United Nations Comtrade API <https://comtrade.un.org/data/>. Comtrade provides country level shipping data for a variety of commodities, these functions allow for easy API query and data returned as a tidy data frame.
Author: Chris Muir [aut, cre]
Maintainer: Chris Muir <chrismuirRVA@gmail.com>
Diff between comtradr versions 0.0.2 dated 2017-07-03 and 0.1.0 dated 2017-10-23
comtradr-0.0.2/comtradr/R/commodity_lookup.R |only comtradr-0.0.2/comtradr/R/country_lookup.R |only comtradr-0.0.2/comtradr/R/ct_commodities_table.R |only comtradr-0.0.2/comtradr/R/ct_countries_table.R |only comtradr-0.0.2/comtradr/R/ct_csv_data.R |only comtradr-0.0.2/comtradr/R/ct_json_data.R |only comtradr-0.0.2/comtradr/man/commodity_lookup.Rd |only comtradr-0.0.2/comtradr/man/country_lookup.Rd |only comtradr-0.0.2/comtradr/man/ct_commodities_table.Rd |only comtradr-0.0.2/comtradr/man/ct_countries_table.Rd |only comtradr-0.0.2/comtradr/man/ct_csv_data.Rd |only comtradr-0.0.2/comtradr/man/ct_json_data.Rd |only comtradr-0.0.2/comtradr/tests/testthat/test-commodity_lookup.R |only comtradr-0.0.2/comtradr/tests/testthat/test-country_lookup.R |only comtradr-0.0.2/comtradr/tests/testthat/test-ct_commodities_table.R |only comtradr-0.0.2/comtradr/tests/testthat/test-ct_countries_table.R |only comtradr-0.1.0/comtradr/DESCRIPTION | 15 comtradr-0.1.0/comtradr/MD5 | 69 comtradr-0.1.0/comtradr/NAMESPACE | 20 comtradr-0.1.0/comtradr/NEWS.md | 64 comtradr-0.1.0/comtradr/R/comtradr.R |only comtradr-0.1.0/comtradr/R/ct_commodity_db_type.R |only comtradr-0.1.0/comtradr/R/ct_commodity_lookup.R |only comtradr-0.1.0/comtradr/R/ct_country_lookup.R |only comtradr-0.1.0/comtradr/R/ct_search.R | 801 +++++----- comtradr-0.1.0/comtradr/R/ct_update_databases.R |only comtradr-0.1.0/comtradr/R/ct_use_pretty_cols.R |only comtradr-0.1.0/comtradr/R/rate_limit.R |only comtradr-0.1.0/comtradr/R/sysdata.rda |only comtradr-0.1.0/comtradr/R/utils.R | 127 + comtradr-0.1.0/comtradr/R/zzz.R |only comtradr-0.1.0/comtradr/README.md | 301 +-- comtradr-0.1.0/comtradr/build |only comtradr-0.1.0/comtradr/data |only comtradr-0.1.0/comtradr/inst |only comtradr-0.1.0/comtradr/man/comtradr.Rd |only comtradr-0.1.0/comtradr/man/ct_commodity_db_type.Rd |only comtradr-0.1.0/comtradr/man/ct_commodity_lookup.Rd |only comtradr-0.1.0/comtradr/man/ct_country_lookup.Rd |only comtradr-0.1.0/comtradr/man/ct_get_remaining_hourly_queries.Rd |only comtradr-0.1.0/comtradr/man/ct_get_reset_time.Rd |only comtradr-0.1.0/comtradr/man/ct_pretty_cols.Rd |only comtradr-0.1.0/comtradr/man/ct_register_token.Rd |only comtradr-0.1.0/comtradr/man/ct_search.Rd | 315 +-- comtradr-0.1.0/comtradr/man/ct_update_databases.Rd |only comtradr-0.1.0/comtradr/man/ct_use_pretty_cols.Rd |only comtradr-0.1.0/comtradr/tests/testthat.R | 8 comtradr-0.1.0/comtradr/tests/testthat/test-ct_commodity_db_type.R |only comtradr-0.1.0/comtradr/tests/testthat/test-ct_commodity_lookup.R |only comtradr-0.1.0/comtradr/tests/testthat/test-ct_country_lookup.R |only comtradr-0.1.0/comtradr/tests/testthat/test-ct_get_remaining_hourly_queries.R |only comtradr-0.1.0/comtradr/tests/testthat/test-ct_get_reset_time.R |only comtradr-0.1.0/comtradr/tests/testthat/test-ct_register_token.R |only comtradr-0.1.0/comtradr/tests/testthat/test-ct_search.R | 346 ++-- comtradr-0.1.0/comtradr/tests/testthat/test-ct_update_databases.R |only comtradr-0.1.0/comtradr/tests/testthat/test-ct_use_pretty_cols.R |only comtradr-0.1.0/comtradr/vignettes |only 57 files changed, 1127 insertions(+), 939 deletions(-)
Title: Headers for the 'xtensor' Library
Description: The 'xtensor' C++ library for numerical analysis with
multi-dimensional array expressions is provided as a header-only
C++14 library. It offers an extensible expression system enabling
lazy broadcasting; an API following the idioms of the C++ standard
library; and tools to manipulate array expressions and build upon 'xtensor'.
Author: Johan Mabille, Sylvain Corlay and Wolf Vollprecht
Maintainer: Sylvain Corlay <sylvain.corlay@gmail.com>
Diff between xtensor versions 0.1.1-0 dated 2017-09-15 and 0.2.0-0 dated 2017-10-23
xtensor-0.1.1-0/xtensor/inst/include/xtensor/xmissing.hpp |only xtensor-0.2.0-0/xtensor/DESCRIPTION | 6 xtensor-0.2.0-0/xtensor/MD5 | 87 xtensor-0.2.0-0/xtensor/inst/include/xtensor-r/rcontainer.hpp | 6 xtensor-0.2.0-0/xtensor/inst/include/xtensor-r/rtensor.hpp | 2 xtensor-0.2.0-0/xtensor/inst/include/xtensor-r/xtensor_r_config.hpp | 4 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xarray.hpp | 4 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xassign.hpp | 177 + xtensor-0.2.0-0/xtensor/inst/include/xtensor/xaxis_iterator.hpp | 11 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xbroadcast.hpp | 29 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xbuilder.hpp | 46 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xcomplex.hpp | 5 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xconcepts.hpp |only xtensor-0.2.0-0/xtensor/inst/include/xtensor/xcontainer.hpp | 79 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xeval.hpp | 1 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xexception.hpp | 56 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xexpression.hpp | 71 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xfunction.hpp | 81 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xfunctorview.hpp | 56 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xgenerator.hpp | 25 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xiterable.hpp | 1 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xiterator.hpp | 14 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xmath.hpp | 374 ++- xtensor-0.2.0-0/xtensor/inst/include/xtensor/xoperation.hpp | 216 +- xtensor-0.2.0-0/xtensor/inst/include/xtensor/xoptional.hpp | 1043 ---------- xtensor-0.2.0-0/xtensor/inst/include/xtensor/xreducer.hpp | 114 - xtensor-0.2.0-0/xtensor/inst/include/xtensor/xscalar.hpp | 85 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xstorage.hpp | 2 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xstridedview.hpp | 49 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xstrides.hpp | 4 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xtensor.hpp | 8 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xtensor_config.hpp | 4 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xtensor_forward.hpp | 10 xtensor-0.2.0-0/xtensor/inst/include/xtensor/xtensor_simd.hpp |only xtensor-0.2.0-0/xtensor/inst/include/xtensor/xutils.hpp | 516 +++- xtensor-0.2.0-0/xtensor/inst/include/xtensor/xview.hpp | 71 xtensor-0.2.0-0/xtensor/inst/include/xtl |only xtensor-0.2.0-0/xtensor/inst/lib/cmake/xtensor-r/xtensor-rConfigVersion.cmake | 2 xtensor-0.2.0-0/xtensor/inst/lib/cmake/xtensor/xtensorConfigVersion.cmake | 2 xtensor-0.2.0-0/xtensor/inst/lib/cmake/xtl |only xtensor-0.2.0-0/xtensor/inst/lib/pkgconfig/xtensor.pc | 2 41 files changed, 1771 insertions(+), 1492 deletions(-)
Title: Deciphering Central Informative Nodes in Network Analysis
Description: Functions for computing, comparing and demonstrating top informative centrality measures within a network.
Author: Minoo Ashtiani,
Mohieddin Jafari
Maintainer: Minoo Ashtiani <m_ashtiani@pasteur.ac.ir>
Diff between CINNA versions 1.1.1 dated 2017-10-08 and 1.1.2 dated 2017-10-23
CINNA-1.1.1/CINNA/man/print.visualize_association.Rd |only CINNA-1.1.1/CINNA/man/print.visualize_correlations.Rd |only CINNA-1.1.1/CINNA/man/print.visualize_dendrogram.Rd |only CINNA-1.1.1/CINNA/man/print.visualize_graph.Rd |only CINNA-1.1.1/CINNA/man/print.visualize_heatmap.Rd |only CINNA-1.1.1/CINNA/man/print.visualize_pair_correlation.Rd |only CINNA-1.1.1/CINNA/man/summary.calculate_centralities.Rd |only CINNA-1.1.1/CINNA/man/summary.graph_extract_components.Rd |only CINNA-1.1.1/CINNA/man/summary.pca_centralities.Rd |only CINNA-1.1.1/CINNA/man/summary.tsne_centralities.Rd |only CINNA-1.1.2/CINNA/DESCRIPTION | 8 - CINNA-1.1.2/CINNA/MD5 | 45 +++++----- CINNA-1.1.2/CINNA/NAMESPACE | 1 CINNA-1.1.2/CINNA/R/CINNA.R | 62 +++++++++----- CINNA-1.1.2/CINNA/inst/doc/CINNA.R | 4 CINNA-1.1.2/CINNA/inst/doc/CINNA.Rmd | 12 +- CINNA-1.1.2/CINNA/inst/doc/CINNA.html | 52 +++++------ CINNA-1.1.2/CINNA/man/print.calculate.centralities.Rd |only CINNA-1.1.2/CINNA/man/print.visualize.association.Rd |only CINNA-1.1.2/CINNA/man/print.visualize.correlations.Rd |only CINNA-1.1.2/CINNA/man/print.visualize.dendrogram.Rd |only CINNA-1.1.2/CINNA/man/print.visualize.graph.Rd |only CINNA-1.1.2/CINNA/man/print.visualize.heatmap.Rd |only CINNA-1.1.2/CINNA/man/print.visualize.pair.correlation.Rd |only CINNA-1.1.2/CINNA/man/summary.calculate.centralities.Rd |only CINNA-1.1.2/CINNA/man/summary.graph.extract.components.Rd |only CINNA-1.1.2/CINNA/man/summary.pca.centralities.Rd |only CINNA-1.1.2/CINNA/man/summary.tsne.centralities.Rd |only CINNA-1.1.2/CINNA/man/visualize_association.Rd | 2 CINNA-1.1.2/CINNA/man/visualize_correlations.Rd | 2 CINNA-1.1.2/CINNA/man/visualize_dendrogram.Rd | 2 CINNA-1.1.2/CINNA/man/visualize_heatmap.Rd | 2 CINNA-1.1.2/CINNA/man/visualize_pair_correlation.Rd | 2 CINNA-1.1.2/CINNA/vignettes/CINNA.Rmd | 12 +- 34 files changed, 115 insertions(+), 91 deletions(-)
Title: Optimized Kernel Regularized Least Squares
Description: Functions for Kernel-Regularized Least Squares optimized for speed and memory usage are provided along with visualization tools. For working papers, sample code, and recent presentations visit <https://sites.google.com/site/petemohanty/software/>. bigKRLS, as well its dependencies, require current versions of R and its compilers (and RStudio if used). For details, see <https://github.com/rdrr1990/bigKRLS/blob/master/INSTALL.md>.
Author: Pete Mohanty [aut, cre], Robert Shaffer [aut]
Maintainer: Pete Mohanty <pete.mohanty@gmail.com>
Diff between bigKRLS versions 2.0.2 dated 2017-09-26 and 2.0.3 dated 2017-10-23
DESCRIPTION | 6 MD5 | 14 - NAMESPACE | 1 R/bigKRLS.R | 366 ++++++++++++++++++++++---------------- R/utils.R | 6 build/vignette.rds |binary inst/doc/bigKRLS_basics.html | 22 +- tests/testthat/test_basic_usage.R | 5 8 files changed, 239 insertions(+), 181 deletions(-)
Title: Zero-Inflated Poisson Hidden (Semi-)Markov Models
Description: Fit zero-inflated Poisson hidden (semi-)Markov models with or without covariates by directly minimizing the negative log likelihood function using the gradient descent algorithm. Multiple starting values should be used to avoid local minima.
Author: Zekun (Jack) Xu, Ye Liu, Ana-Maria Staicu, Eric Laber
Maintainer: Zekun (Jack) Xu <zekunxu@gmail.com>
Diff between ziphsmm versions 1.0.7 dated 2017-09-23 and 1.0.8 dated 2017-10-23
DESCRIPTION | 10 - MD5 | 26 +- NAMESPACE | 8 R/RcppExports.R | 55 +++++ R/dist_learn.R | 341 +++++++++++++++++++++++------------- R/dist_learn2.R |only R/package.R | 7 man/dist_learn.Rd | 82 ++++---- man/dist_learn2.Rd |only man/grad_zipnegloglik_cov_cont.Rd |only man/grad_zipnegloglik_nocov_cont.Rd |only man/package-ziphsmm.Rd | 8 man/retrieve_cov_cont.Rd |only man/retrieve_nocov_cont.Rd |only man/zipnegloglik_cov_cont.Rd |only man/zipnegloglik_nocov_cont.Rd |only src/init.c | 16 + src/rcpparma_hello_world.cpp | 56 +++++ 18 files changed, 425 insertions(+), 184 deletions(-)
Title: Turtle Graphics
Description: An implementation of turtle graphics
<http://en.wikipedia.org/wiki/Turtle_graphics>.
Turtle graphics comes from Papert's language Logo and has
been used to teach concepts of computer programming.
Author: Anna Cena [aut],
Marek Gagolewski [aut],
Marcin Kosinski [aut],
Natalia Potocka [aut],
Barbara Zogala-Siudem [aut, cre]
Maintainer: Barbara Zogala-Siudem <zogala@rexamine.com>
Diff between TurtleGraphics versions 1.0-5 dated 2014-10-07 and 1.0-7 dated 2017-10-23
DESCRIPTION | 19 ++++---- MD5 | 62 ++++++++++++++-------------- NAMESPACE | 3 - NEWS | 5 ++ R/TurtleGraphics-package.R | 9 ++-- R/do.R | 26 +++++------- R/get.R | 16 +++---- R/goto.R | 44 ++++++++++---------- R/init.R | 36 ++++++++-------- R/internal.R | 20 ++++----- R/move.R | 90 +++++++++++++++++++++--------------------- R/param.R | 34 +++++++-------- R/reset.R | 24 +++++------ R/show.R | 20 ++++----- R/status.R | 14 +++--- R/turn.R | 24 +++++------ build/vignette.rds |binary inst/doc/TurtleGraphics.Rnw | 4 - inst/doc/TurtleGraphics.pdf |binary man/TurtleGraphics-package.Rd | 29 +++++-------- man/turtle_do.Rd | 25 ++++------- man/turtle_getpos.Rd | 26 ++++-------- man/turtle_goto.Rd | 26 ++++-------- man/turtle_init.Rd | 25 ++++------- man/turtle_move.Rd | 29 +++++-------- man/turtle_param.Rd | 27 +++++------- man/turtle_reset.Rd | 24 ++++------- man/turtle_show.Rd | 26 ++++-------- man/turtle_status.Rd | 23 +++------- man/turtle_turn.Rd | 27 +++++------- man/turtle_up.Rd | 25 ++++------- vignettes/TurtleGraphics.Rnw | 3 - 32 files changed, 347 insertions(+), 418 deletions(-)
More information about TurtleGraphics at CRAN
Permanent link
Title: Interface with Google BigQuery with Shiny Compatibility
Description: Interface with 'Google BigQuery',
see <https://cloud.google.com/bigquery/> for more information.
This package uses 'googleAuthR' so is compatible with similar packages,
including 'Google Cloud Storage' (<https://cloud.google.com/storage/>) for result extracts.
Author: Mark Edmondson [aut, cre],
Hadley Wickham [ctb]
Maintainer: Mark Edmondson <r@sunholo.com>
Diff between bigQueryR versions 0.3.1 dated 2017-05-20 and 0.3.2 dated 2017-10-23
bigQueryR-0.3.1/bigQueryR/tests |only bigQueryR-0.3.2/bigQueryR/DESCRIPTION | 8 bigQueryR-0.3.2/bigQueryR/MD5 | 13 bigQueryR-0.3.2/bigQueryR/NEWS.md | 6 bigQueryR-0.3.2/bigQueryR/R/auth.R | 4 bigQueryR-0.3.2/bigQueryR/R/options.R | 6 bigQueryR-0.3.2/bigQueryR/inst/doc/bigQueryR.html | 384 +++++++--------------- 7 files changed, 144 insertions(+), 277 deletions(-)
Title: Estimate Procedure in Case of First Order Autocorrelation
Description: Solve first order autocorrelation problems using an iterative method. This procedure estimates both autocorrelation and beta coefficients recursively until we reach the convergence (8th decimal as default). The residuals are computed after estimating Beta using EGLS approach and Rho is estimated using the previous residuals.
Author: Stefano Spada [aut, cre],
Matteo Quartagno [ctb],
Marco Tamburini [ctb],
David Robinson [ctb]
Maintainer: Stefano Spada <lostefanospada@gmail.com>
Diff between orcutt versions 2.1 dated 2017-04-09 and 2.2 dated 2017-10-23
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/cochrane.orcutt.R | 6 +++--- man/cochrane.orcutt.Rd | 5 ++++- man/orcutt-package.Rd | 4 ++-- 5 files changed, 18 insertions(+), 15 deletions(-)
Title: A Solver for 'ompr' that Uses the R Optimization Infrastructure
('ROI')
Description: A solver for 'ompr' based on the R Optimization Infrastructure ('ROI').
The package makes all solvers in 'ROI' available to solve 'ompr' models. Please see the
'ompr' website <https://dirkschumacher.github.io/ompr> and package docs for more information
and examples on how to use it.
Author: Dirk Schumacher [aut, cre]
Maintainer: Dirk Schumacher <mail@dirk-schumacher.net>
Diff between ompr.roi versions 0.6.0 dated 2017-04-19 and 0.6.1 dated 2017-10-23
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 6 ++++++ R/with-roi.R | 6 +++--- 4 files changed, 17 insertions(+), 11 deletions(-)
Title: Regularized Linear Models
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang <zwang@connecticutchildrens.org>
Diff between mpath versions 0.3-3 dated 2017-08-18 and 0.3-4 dated 2017-10-23
DESCRIPTION | 12 ++-- MD5 | 37 ++++++++------- NAMESPACE | 2 NEWS | 11 ++++ R/cv.glmreg.R | 1 R/cv.glmregNegbin.R | 5 +- R/cv.nclreg.R | 1 R/cv.zipath.R | 22 ++++++++- R/nclreg.R | 89 ++++++++++++++++++++++++++++++++----- build/vignette.rds |binary inst/doc/german.Rnw | 2 inst/doc/german.pdf |binary inst/doc/static_brcancer.pdf |only inst/doc/static_brcancer.pdf.asis |only inst/doc/static_german.pdf.asis | 2 man/cv.glmreg.Rd | 3 - man/cv.zipath.Rd | 2 man/nclreg_fit.Rd | 7 +- vignettes/german.Rnw | 2 vignettes/static_brcancer.pdf.asis |only vignettes/static_german.pdf.asis | 2 21 files changed, 150 insertions(+), 50 deletions(-)
Title: The Moving Epidemic Method
Description: The Moving Epidemic Method, created by T Vega and JE Lozano (2012, 2015) <doi:10.1111/j.1750-2659.2012.00422.x>, <doi:10.1111/irv.12330>, allows the weekly assessment of the epidemic and intensity status to help in routine respiratory infections surveillance in health systems. Allows the comparison of different epidemic indicators, timing and shape with past epidemics and across different regions or countries with different surveillance systems. Also, it gives a measure of the performance of the method in terms of sensitivity and specificity of the alert week.
Author: Jose E. Lozano [aut, cre]
Maintainer: Jose E. Lozano <lozalojo@gmail.com>
Diff between mem versions 2.10 dated 2017-09-01 and 2.11 dated 2017-10-23
DESCRIPTION | 12 ++++++------ MD5 | 26 +++++++++++++------------- R/memgoodness.R | 2 +- R/optimum.by.inspection.R | 2 +- R/roc.analysis.R | 2 +- R/suavizado.R | 2 +- R/transformdata.back.R | 7 ++++--- R/transformseries.R | 6 +----- R/transformseries.odd.R | 17 ++++++++++++----- README.md | 11 ++++++++++- man/memgoodness.Rd | 2 +- man/optimum.by.inspection.Rd | 6 +++--- man/roc.analysis.Rd | 2 +- man/transformseries.odd.Rd | 2 +- 14 files changed, 56 insertions(+), 43 deletions(-)
Title: Nonlinear Methods for Analyzing Dendroclimatological Data
Description: Provides novel dendroclimatological methods, primarily used by the
Tree-ring research community. There are two core functions. The first one is
daily_response(), which finds the optimal sequence of days that are related
to one or more tree-ring proxy records. The second one is compare_methods(),
which effectively compares linear and several nonlinear regression algorithms.
Author: Jernej Jevsenak [aut, cre], Tom Levanic [ctb]
Maintainer: Jernej Jevsenak <jernej.jevsenak@gmail.com>
Diff between dendroTools versions 0.0.3 dated 2017-09-28 and 0.0.4 dated 2017-10-23
dendroTools-0.0.3/dendroTools/R/daily_temperatures_example.R |only dendroTools-0.0.3/dendroTools/R/iter.R |only dendroTools-0.0.3/dendroTools/data/daily_temperatures_example.rda |only dendroTools-0.0.3/dendroTools/man/daily_temperatures_example.Rd |only dendroTools-0.0.3/dendroTools/man/iter.Rd |only dendroTools-0.0.4/dendroTools/DESCRIPTION | 16 dendroTools-0.0.4/dendroTools/MD5 | 71 - dendroTools-0.0.4/dendroTools/NAMESPACE | 24 dendroTools-0.0.4/dendroTools/NEWS.md | 19 dendroTools-0.0.4/dendroTools/R/KRE_daily_temperatures.R |only dendroTools-0.0.4/dendroTools/R/LJ_daily_temperatures.R |only dendroTools-0.0.4/dendroTools/R/calculate_measures.R | 6 dendroTools-0.0.4/dendroTools/R/compare_methods.R | 616 +++++---- dendroTools-0.0.4/dendroTools/R/count_ones.R | 6 dendroTools-0.0.4/dendroTools/R/daily_response.R | 347 ++++- dendroTools-0.0.4/dendroTools/R/example_MVA.R |only dendroTools-0.0.4/dendroTools/R/example_TRW.R |only dendroTools-0.0.4/dendroTools/R/example_dataset_1.R | 8 dendroTools-0.0.4/dendroTools/R/example_proxies_1.R | 6 dendroTools-0.0.4/dendroTools/R/plot_extreme.R | 665 ++++++++- dendroTools-0.0.4/dendroTools/R/plot_heatmap.R | 82 + dendroTools-0.0.4/dendroTools/R/plot_specific.R | 674 ++++++++-- dendroTools-0.0.4/dendroTools/R/round_df.R |only dendroTools-0.0.4/dendroTools/R/smooth_matrix.R |only dendroTools-0.0.4/dendroTools/R/years_to_rownames.R | 2 dendroTools-0.0.4/dendroTools/data/KRE_daily_temperatures.rda |only dendroTools-0.0.4/dendroTools/data/LJ_daily_temperatures.rda |only dendroTools-0.0.4/dendroTools/data/example_MVA.rda |only dendroTools-0.0.4/dendroTools/data/example_TRW.rda |only dendroTools-0.0.4/dendroTools/data/example_dataset_1.rda |binary dendroTools-0.0.4/dendroTools/data/example_proxies_1.rda |binary dendroTools-0.0.4/dendroTools/man/KRE_daily_temperatures.Rd |only dendroTools-0.0.4/dendroTools/man/LJ_daily_temperatures.Rd |only dendroTools-0.0.4/dendroTools/man/calculate_measures.Rd | 4 dendroTools-0.0.4/dendroTools/man/compare_methods.Rd | 75 - dendroTools-0.0.4/dendroTools/man/count_ones.Rd | 4 dendroTools-0.0.4/dendroTools/man/daily_response.Rd | 105 + dendroTools-0.0.4/dendroTools/man/example_MVA.Rd |only dendroTools-0.0.4/dendroTools/man/example_TRW.Rd |only dendroTools-0.0.4/dendroTools/man/example_dataset_1.Rd | 8 dendroTools-0.0.4/dendroTools/man/example_proxies_1.Rd | 6 dendroTools-0.0.4/dendroTools/man/plot_extreme.Rd | 15 dendroTools-0.0.4/dendroTools/man/plot_heatmap.Rd | 13 dendroTools-0.0.4/dendroTools/man/plot_specific.Rd | 14 dendroTools-0.0.4/dendroTools/man/round_df.Rd |only dendroTools-0.0.4/dendroTools/man/smooth_matrix.Rd |only dendroTools-0.0.4/dendroTools/tests/testthat/test_general.R | 72 - 47 files changed, 2160 insertions(+), 698 deletions(-)
Title: Models for Continuous Traits Evolving in Macroevolutionary
Landscapes of any Shape
Description: Provides a set of functions to fit general macroevolutionary models for continuous traits evolving in adaptive landscapes of any shape. This package implements the Fokker-Planck-Kolmogorov model (FPK), in which the trait evolves under random diffusion but is also subject to a force that pulls it towards specific values - this force can be of any shape. FPK has a version in which hard reflective bounds exist at the extremes of the trait interval: this second model is called BBMV.
Author: Florian C. Boucher
Maintainer: Florian C. Boucher <flofloboucher@gmail.com>
Diff between BBMV versions 1.0 dated 2017-05-02 and 2.0 dated 2017-10-23
BBMV-1.0/BBMV/R/LogLik_bounds_est.R |only BBMV-1.0/BBMV/R/MH_MCMC_V_ax4bx2cx_root_bounds.R |only BBMV-1.0/BBMV/R/Optim_bBM_0_flex_pts_multiple_starts.R |only BBMV-1.0/BBMV/R/Optim_bBM_0_flex_pts_start.R |only BBMV-1.0/BBMV/R/Optim_bBM_bounds_fixed_potential.R |only BBMV-1.0/BBMV/R/Optim_bBM_linear.R |only BBMV-1.0/BBMV/R/Optim_bBM_quadratic.R |only BBMV-1.0/BBMV/R/Optim_bBM_x2x_flex_pts_multiple_starts.R |only BBMV-1.0/BBMV/R/Optim_bBM_x2x_flex_pts_start.R |only BBMV-1.0/BBMV/R/Optim_bBM_x4x2x.R |only BBMV-1.0/BBMV/R/Optim_bBM_x4x2x_flex_pts_multiple_starts.R |only BBMV-1.0/BBMV/R/Optim_bBM_x4x2x_flex_pts_start.R |only BBMV-1.0/BBMV/R/Optim_bBM_x_flex_pts_multiple_starts.R |only BBMV-1.0/BBMV/R/Optim_bBM_x_flex_pts_start.R |only BBMV-1.0/BBMV/R/Sim_BBMV.R |only BBMV-1.0/BBMV/R/Uncertainty_BBMV.R |only BBMV-1.0/BBMV/R/bBM_loglik_0_flex_points.R |only BBMV-1.0/BBMV/R/bBM_loglik_bounds.R |only BBMV-1.0/BBMV/R/bBM_loglik_linear_bounds.R |only BBMV-1.0/BBMV/R/bBM_loglik_quadra_bounds.R |only BBMV-1.0/BBMV/R/bBM_loglik_x2x_flex_points.R |only BBMV-1.0/BBMV/R/bBM_loglik_x4x2x_bounds.R |only BBMV-1.0/BBMV/R/bBM_loglik_x4x2x_flex_pts.R |only BBMV-1.0/BBMV/R/bBM_loglik_x_flex_points.R |only BBMV-1.0/BBMV/R/fit_BBMV.R |only BBMV-1.0/BBMV/R/get.landscape.BBMV.R |only BBMV-1.0/BBMV/R/get.multiple.landscapes.BBMV.R |only BBMV-1.0/BBMV/R/log_prior_7pars_root_bounds.R |only BBMV-1.0/BBMV/R/proposal_7pars_root_bounds.R |only BBMV-1.0/BBMV/man/MH_MCMC_V_ax4bx2cx_root_bounds.Rd |only BBMV-1.0/BBMV/man/Optim_bBM_0_flex_pts_multiple_starts.Rd |only BBMV-1.0/BBMV/man/Sim_BBMV.Rd |only BBMV-1.0/BBMV/man/Uncertainty_BBMV.Rd |only BBMV-1.0/BBMV/man/fit_BBMV.Rd |only BBMV-1.0/BBMV/man/get.landscape.BBMV.Rd |only BBMV-1.0/BBMV/man/log_prior_7pars_root_bounds.Rd |only BBMV-1.0/BBMV/man/proposal_7pars_root_bounds.Rd |only BBMV-2.0/BBMV/DESCRIPTION | 10 BBMV-2.0/BBMV/MD5 | 116 +++++----- BBMV-2.0/BBMV/NAMESPACE | 5 BBMV-2.0/BBMV/R/ACE_FPK.R |only BBMV-2.0/BBMV/R/DiffMat_backwards.R | 6 BBMV-2.0/BBMV/R/DiffMat_forward.R | 4 BBMV-2.0/BBMV/R/FPK_sim_traitgram.R |only BBMV-2.0/BBMV/R/FormatTree_bounds.R | 3 BBMV-2.0/BBMV/R/LogLik_bounds_est_root.R | 4 BBMV-2.0/BBMV/R/MH_MCMC_FPK.R |only BBMV-2.0/BBMV/R/MH_MCMC_FPK_multiclades.R |only BBMV-2.0/BBMV/R/Sim_FPK.R |only BBMV-2.0/BBMV/R/Uncertainty_FPK.R |only BBMV-2.0/BBMV/R/VectorPos_bounds.R | 33 ++ BBMV-2.0/BBMV/R/charac_time.R | 16 - BBMV-2.0/BBMV/R/find.mle_FPK.R |only BBMV-2.0/BBMV/R/find.mle_FPK_multiple_clades_same_V_different_sig2.R |only BBMV-2.0/BBMV/R/find.mle_FPK_multiple_clades_same_V_same_sig2.R |only BBMV-2.0/BBMV/R/fit_BBMV_multiple_clades_different_V_different_sig2.R |only BBMV-2.0/BBMV/R/fit_FPK_multiple_clades_different_V_different_sig2.R |only BBMV-2.0/BBMV/R/get.landscape.FPK.MCMC.R |only BBMV-2.0/BBMV/R/get.landscape.FPK.R |only BBMV-2.0/BBMV/R/lnL_BBMV.R |only BBMV-2.0/BBMV/R/lnL_FPK.R |only BBMV-2.0/BBMV/R/lnl_BBMV_multiclades_same_V_different_sig2.R |only BBMV-2.0/BBMV/R/lnl_BBMV_multiclades_same_V_same_sig2.R |only BBMV-2.0/BBMV/R/lnl_FPK_multiclades_same_V_different_sig2.R |only BBMV-2.0/BBMV/R/lnl_FPK_multiclades_same_V_same_sig2.R |only BBMV-2.0/BBMV/R/log_prior_5pars_root_bounds.R |only BBMV-2.0/BBMV/R/log_prior_nclades_plus_3_pars.R |only BBMV-2.0/BBMV/R/proposal_5pars_root_bounds.R |only BBMV-2.0/BBMV/R/proposal_nclades_plus_3_pars.R |only BBMV-2.0/BBMV/R/reformat_multiclade_results.R |only BBMV-2.0/BBMV/R/trans_from_fixed.R |only BBMV-2.0/BBMV/R/trans_to_fixed.R |only BBMV-2.0/BBMV/build/partial.rdb |binary BBMV-2.0/BBMV/man/ACE_FPK.Rd |only BBMV-2.0/BBMV/man/BBMV-package.Rd | 4 BBMV-2.0/BBMV/man/DiffMat_backwards.Rd | 2 BBMV-2.0/BBMV/man/DiffMat_forward.Rd | 2 BBMV-2.0/BBMV/man/FPK_sim_traitgram.Rd |only BBMV-2.0/BBMV/man/FormatTree_bounds.Rd | 2 BBMV-2.0/BBMV/man/LogLik_bounds.Rd | 29 -- BBMV-2.0/BBMV/man/MH_MCMC_FPK.Rd |only BBMV-2.0/BBMV/man/MH_MCMC_FPK_multiclades.Rd |only BBMV-2.0/BBMV/man/Sim_FPK.Rd |only BBMV-2.0/BBMV/man/Uncertainty_FPK.Rd |only BBMV-2.0/BBMV/man/VectorPos_bounds.Rd | 2 BBMV-2.0/BBMV/man/charac_time.Rd | 22 - BBMV-2.0/BBMV/man/find.mle_FPK.Rd |only BBMV-2.0/BBMV/man/find.mle_FPK_multiple_clades_same_V_different_sig2.Rd |only BBMV-2.0/BBMV/man/fit_FPK_multiple_clades_different_V_different_sig2.Rd |only BBMV-2.0/BBMV/man/get.landscape.FPK.MCMC.Rd |only BBMV-2.0/BBMV/man/get.landscape.FPK.Rd |only BBMV-2.0/BBMV/man/lnL_FPK.Rd |only BBMV-2.0/BBMV/man/lnl_FPK_multiclades_same_V_different_sig2.Rd |only BBMV-2.0/BBMV/man/log_prior_5pars_root_bounds.Rd |only BBMV-2.0/BBMV/man/log_prior_nclades_plus_3_pars.Rd |only BBMV-2.0/BBMV/man/prep_mat_exp.Rd | 2 BBMV-2.0/BBMV/man/proposal_5pars_root_bounds.Rd |only BBMV-2.0/BBMV/man/proposal_nclades_plus_3_pars.Rd |only BBMV-2.0/BBMV/man/reformat_multiclade_results.Rd |only BBMV-2.0/BBMV/man/trans_from_fixed.Rd |only 100 files changed, 127 insertions(+), 135 deletions(-)
Title: Interface with Azure Machine Learning Datasets, Experiments and
Web Services
Description: Functions and datasets to support Azure Machine Learning. This
allows you to interact with datasets, as well as publish and consume R functions
as API services.
Author: Rich Calaway [cre],
Andrie de Vries [aut],
Microsoft Corporation [cph],
Revolution Analytics [cph] (Code adapted from the foreach package)
Maintainer: Rich Calaway <richcala@microsoft.com>
Diff between AzureML versions 0.2.13 dated 2016-08-21 and 0.2.14 dated 2017-10-23
DESCRIPTION | 20 - MD5 | 66 +-- NAMESPACE | 2 R/workspace.R | 2 build/vignette.rds |binary inst/doc/getting_started.html | 277 +++++++++++++--- man/AzureML-deprecated.Rd | 3 man/AzureML-package.Rd | 6 man/consume.Rd | 3 man/datasets.Rd | 9 man/delete.datasets.Rd | 9 man/deleteWebService.Rd | 5 man/discoverSchema.Rd | 8 man/download.datasets.Rd | 3 man/download.intermediate.dataset.Rd | 11 man/endpointHelp.Rd | 8 man/endpoints.Rd | 9 man/experiments.Rd | 7 man/getDetailsFromUrl.Rd | 3 man/is.Dataset.Rd | 3 man/is.Endpoint.Rd | 3 man/is.Service.Rd | 3 man/is.Workspace.Rd | 3 man/publishWebService.Rd | 5 man/read.AzureML.config.Rd | 3 man/refresh.Rd | 3 man/services.Rd | 11 man/upload.dataset.Rd | 9 man/workspace.Rd | 28 - tests/testthat/config.json | 15 tests/testthat/test-1-workspace.R | 2 tests/testthat/test-2-datasets-upload-download-delete.R | 11 tests/testthat/test-2-download-each-dataset-type.R | 1 tests/testthat/test-5-try_fetch.R | 23 - 34 files changed, 366 insertions(+), 208 deletions(-)
Title: Artificial Neural Networks for Anomaly Detection
Description: Training of general classification and regression neural networks using
gradient descent. Special features include a function for training replicator
neural networks and a function for training autoencoders. Multiple activation and
cost functions (including Huber and pseudo-Huber) are supported, as well as L1
and L2 regularization, momentum, early stopping and the possibility to specify
a learning rate schedule. The package contains a vectorized gradient descent
implementation which facilitates faster training through batch learning.
Author: Bart Lammers
Maintainer: Bart Lammers <bart.f.lammers@gmail.com>
Diff between ANN2 versions 1.0 dated 2017-10-14 and 1.1 dated 2017-10-23
DESCRIPTION | 16 ++++++++-------- MD5 | 6 +++--- R/namespace.R | 2 +- src/rcpp-nn.cpp | 3 ++- 4 files changed, 14 insertions(+), 13 deletions(-)
Title: Web Crawler and Scraper
Description: Performs parallel web crawling and web scraping. It is designed to crawl, parse and store web pages to produce data that can be directly used for analysis application. For details see Khalil and Fakir (2017) <DOI:10.1016/j.softx.2017.04.004>.
Author: Salim Khalil [aut, cre]
Maintainer: Salim Khalil <khalilsalim1@gmail.com>
Diff between Rcrawler versions 0.1.4 dated 2017-10-22 and 0.1.5 dated 2017-10-23
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/LinkExtractor.R | 9 +++++++-- R/Rcrawlerp.R | 3 ++- R/contentscraper.R | 4 ++-- man/ContentScraper.Rd | 4 ++-- man/LinkExtractor.Rd | 3 +++ 7 files changed, 26 insertions(+), 17 deletions(-)
Title: Australian Tax Policy Analysis
Description: A series of functions focused on costing and evaluating Australian tax policy in support of the Grattan Institute's Australian Perspectives program. For access to the 'taxstats' package, please run install.packages("taxstats", repos = "https://hughparsonage.github.io/drat/", type = "source"). N.B. The 'taxstats' package is approximately 50 MB.
Author: Hugh Parsonage [aut, cre],
Tim Cameron [aut],
Brendan Coates [aut],
William Young [aut],
Ittima Cherastidtham [dtc],
W. Karsten [ctb],
M. Enrique Garcia [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between grattan versions 1.5.1.2 dated 2017-08-30 and 1.5.2.4 dated 2017-10-23
DESCRIPTION | 32 MD5 | 124 ++- NAMESPACE | 16 NEWS.md | 17 R/RcppExports.R | 91 ++ R/aus_pop_qtr_age.R | 21 R/bto.R | 73 +- R/cpi_inflator.R | 20 R/financialfunctions.R | 4 R/fy.year.R | 6 R/generic_inflator.R | 61 + R/grattan-package.R | 20 R/income_tax.R | 355 ++++++++-- R/income_tax_sapto.R | 2 R/inflator.R | 30 R/inverse_income.R | 14 R/lf_inflator.R | 50 + R/medicare_levy.R | 28 R/mutate_super_vars.R | 2 R/project.R | 40 - R/rebate_income.R | 15 R/sapto.R | 87 +- R/student_repayment.R | 8 R/sysdata.rda |binary R/utils.R | 41 - R/wage_inflator.R | 47 + README.md | 2 build/vignette.rds |binary data/residential_property_prices.rda |binary inst/doc/Modelling-superannuation-changes.R | 20 inst/doc/Modelling-superannuation-changes.Rmd | 20 inst/doc/Modelling-superannuation-changes.html | 81 +- inst/doc/Performance-of-project.R | 62 + inst/doc/Performance-of-project.Rmd | 66 + inst/doc/Performance-of-project.html | 84 +- inst/doc/companion-to-sample-file-1314.html | 831 ++++++++++++------------- inst/doc/differential-uprating.html | 16 man/IncomeTax.Rd |only man/MedicareLevy.Rd |only man/Offset.Rd |only man/bto.Rd | 15 man/grattan-package.Rd |only man/income_tax.Rd | 18 man/income_tax_sapto.Rd | 2 man/lf_inflator.Rd | 8 man/sapto.Rd | 5 man/sapto_rcpp.Rd |only man/sapto_rcpp_singleton.Rd |only man/sapto_rcpp_yr.Rd |only man/student_repayment.Rd | 6 man/wage_inflator.Rd | 11 src/IncomeTax.cpp |only src/Makevars |only src/Makevars.win |only src/MedicareLevySingle.cpp |only src/Offset.cpp |only src/RcppExports.cpp | 164 ++++ src/grattan.h |only src/init.c | 40 - src/pmaxC.cpp | 72 +- src/pminC.cpp | 54 + src/sapto_rcpp.cpp |only src/sapto_rcpp_singleton.cpp |only src/sapto_rcpp_yr.cpp |only tests/testthat/test_LITO.R | 5 tests/testthat/test_Offset.R |only tests/testthat/test_bto.R | 11 tests/testthat/test_income_tax_cpp.R |only tests/testthat/test_incometax_single.R | 11 tests/testthat/test_medicare_levy.R | 1 vignettes/Modelling-superannuation-changes.Rmd | 20 vignettes/Performance-of-project.Rmd | 66 + 72 files changed, 1918 insertions(+), 977 deletions(-)
Title: Detecting Breakpoints and Estimating Segments in Trend
Description: A program for analyzing vegetation time series, with two algorithms: 1) change detection algorithm that detects trend changes, determines their type (abrupt or non-abrupt), and estimates their timing, magnitude, number, and direction; 2) generalization algorithm that simplifies the temporal trend into main features. The user can set the number of major breakpoints or magnitude of greatest changes of interest for detection, and can control the generalization process by setting an additional parameter of generalization-percentage.
Author: Sadegh Jamali, Hristo Tomov
Maintainer: Hristo Tomov <tomov.hristo@gmail.com>
Diff between DBEST versions 1.7 dated 2017-05-31 and 1.8 dated 2017-10-23
DESCRIPTION | 8 +-- MD5 | 4 - R/plot.DBEST.R | 128 ++++++++++++++++++++++++++++----------------------------- 3 files changed, 70 insertions(+), 70 deletions(-)
More information about ROI.plugin.deoptim at CRAN
Permanent link
Title: Analysis of MHC Data in Non-Model Species
Description: Ten tools for analysis of major histocompatibility complex (MHC) data in non-
model species. The functions are tailored for amplicon data sets that have been
filtered using the 'dada2' method (for more information visit
<https://benjjneb.github.io/dada2>), but even other data sets can be analysed,
if the data tables are formatted according to the description in each function.
The ReplMatch() function matches replicates in data sets in order to evaluate
genotyping success.
The GetReplTable() and GetReplStats() functions perform such an evaluation.
The HpltFind() function infers putative haplotypes from families in the data
set.
The GetHpltTable() and GetHpltStats() functions evaluate the accuracy of
the haplotype inference.
The PapaDiv() function compares parent pairs in the data set and calculate their
joint MHC diversity, taking into account sequence variants that occur in both
parents.
The MeanPdist() function calculates the mean p-distance from pairwise
comparisons sequences in each sample in a data set. The function includes the
option to specify which codons to compare.
The CreateFas() function creates a fasta file with all the sequences in the data
set.
The CreateSamplesFas() function creates a fasta file for each sample in the data
set.
Author: Jacob Roved [aut, cre]
Maintainer: Jacob Roved <jacob.roved@biol.lu.se>
Diff between MHCtools versions 1.0.0 dated 2017-09-29 and 1.1.0 dated 2017-10-23
DESCRIPTION | 16 ++++++++++------ MD5 | 10 ++++++---- NAMESPACE | 2 ++ NEWS.md | 7 +++++++ R/MeanPdist_func_20171023.R |only README.md | 8 +++++++- man/MeanPdist.Rd |only 7 files changed, 32 insertions(+), 11 deletions(-)
Title: Efficient Initials for Computing the Maximal Eigenpair
Description: An implementation for using efficient initials to compute the
maximal eigenpair in R. It provides three algorithms to find the efficient
initials under two cases: the tridiagonal matrix case and the general matrix
case. Besides, it also provides two algorithms for the next to the maximal eigenpair under
these two cases.
Author: Mu-Fa Chen <mfchen@bnu.edu.cn>
Maintainer: Xiao-Jun Mao <maoxj.ki@gmail.com>
Diff between EfficientMaxEigenpair versions 0.1.3 dated 2017-08-03 and 0.1.4 dated 2017-10-23
EfficientMaxEigenpair-0.1.3/EfficientMaxEigenpair/R/ray.quot.R |only EfficientMaxEigenpair-0.1.3/EfficientMaxEigenpair/inst/doc/EfficientMaxEigenpair.html |only EfficientMaxEigenpair-0.1.3/EfficientMaxEigenpair/man/ray.quot.Rd |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/DESCRIPTION | 12 EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/MD5 | 59 ++- EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/NAMESPACE | 11 EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/EfficientMaxEigenpair.R | 45 ++ EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/eff.ini.maxeig.general.R | 88 ++--- EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/eff.ini.maxeig.shift.inv.tri.R |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/eff.ini.maxeig.tri.R | 131 +++----- EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/eff.ini.seceig.general.R | 33 -- EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/eff.ini.seceig.tri.R | 36 +- EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/find_deltak.R |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/ray.quot.general.R |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/ray.quot.seceig.general.R |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/ray.quot.seceig.tri.R |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/ray.quot.tri.R |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/shift.inv.tri.R |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/tri.sol.R |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/R/tridiag.R | 1 EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/README.md | 6 EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/build/vignette.rds |binary EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/inst/doc/EfficientMaxEigenpair.R | 119 +++++-- EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/inst/doc/EfficientMaxEigenpair.Rmd | 162 +++++++--- EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/inst/doc/EfficientMaxEigenpair.pdf |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/EfficientMaxEigenpair.Rd | 45 ++ EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/eff.ini.maxeig.general.Rd | 16 EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/eff.ini.maxeig.shift.inv.tri.Rd |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/eff.ini.maxeig.tri.Rd | 13 EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/eff.ini.seceig.general.Rd | 2 EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/eff.ini.seceig.tri.Rd | 2 EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/find_deltak.Rd |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/ray.quot.general.Rd |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/ray.quot.seceig.general.Rd |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/ray.quot.seceig.tri.Rd |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/ray.quot.tri.Rd |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/shift.inv.tri.Rd |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/man/tri.sol.Rd |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/vignettes/EfficientMaxEigenpair.Rmd | 162 +++++++--- EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/vignettes/EfficientMaxEigenpair.html |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/vignettes/v012.pdf |only EfficientMaxEigenpair-0.1.4/EfficientMaxEigenpair/vignettes/v12.pdf |only 42 files changed, 613 insertions(+), 330 deletions(-)
More information about EfficientMaxEigenpair at CRAN
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Title: Estimating Long Memory Parameter using Wavelet
Description: Estimation of the long memory parameter using wavelets. Other estimation techniques like
GPH (Geweke and Porter-Hudak,1983, <DOI:10.1111/j.1467-9892.1983.tb00371.x>)
and Semiparametric methods(Robinson, P. M.,1995, <DOI:10.1214/aos/1176324317>) also have included.
Author: Sandipan Samanta and Dr. Ranjit Kumar Paul
Maintainer: Dr. Ranjit Kumar Paul <ranjitstat@gmail.com>
Diff between WaveLetLongMemory versions 0.1.1 dated 2017-05-11 and 0.1.2 dated 2017-10-23
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/WaveLetLongMemory.R | 7 ++----- 3 files changed, 7 insertions(+), 10 deletions(-)
More information about WaveLetLongMemory at CRAN
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Title: Model and Analyse Interval Data
Description: Implements methodologies for modelling interval data by Normal
and Skew-Normal distributions, considering appropriate parameterizations of
the variance-covariance matrix that takes into account the intrinsic nature of
interval data, and lead to four different possible configuration structures.
The Skew-Normal parameters can be estimated by maximum likelihood, while Normal
parameters may be estimated by maximum likelihood or robust trimmed maximum
likelihood methods.
Author: Pedro Duarte Silva <psilva@porto.ucp.pt>, Paula Brito
<mpbrito.fep.up.pt>
Maintainer: Pedro Duarte Silva <psilva@porto.ucp.pt>
Diff between MAINT.Data versions 1.1.3 dated 2017-10-19 and 1.1.4 dated 2017-10-23
MAINT.Data-1.1.3/MAINT.Data/R/MxtDist.fit.R |only MAINT.Data-1.1.4/MAINT.Data/CHANGELOG | 16 + MAINT.Data-1.1.4/MAINT.Data/DESCRIPTION | 8 MAINT.Data-1.1.4/MAINT.Data/MD5 | 35 +- MAINT.Data-1.1.4/MAINT.Data/R/ClasGenMetDef.R | 288 +++++++++--------- MAINT.Data-1.1.4/MAINT.Data/R/Rfasttle.R | 28 - MAINT.Data-1.1.4/MAINT.Data/R/RobMxtDEst.R | 93 ++++- MAINT.Data-1.1.4/MAINT.Data/R/fasttle.R | 66 ++-- MAINT.Data-1.1.4/MAINT.Data/R/fulltle.R | 40 +- MAINT.Data-1.1.4/MAINT.Data/R/mle.R | 3 MAINT.Data-1.1.4/MAINT.Data/man/IdtMxNDRE-class.Rd | 16 - MAINT.Data-1.1.4/MAINT.Data/man/IdtSngNDRE-class.Rd | 13 MAINT.Data-1.1.4/MAINT.Data/man/MAINT.Data-package.Rd | 4 MAINT.Data-1.1.4/MAINT.Data/man/RobEstControl.Rd | 7 MAINT.Data-1.1.4/MAINT.Data/man/fasttle-methods.Rd | 54 --- MAINT.Data-1.1.4/MAINT.Data/man/fulltle-methods.Rd | 5 MAINT.Data-1.1.4/MAINT.Data/src/Makevars | 2 MAINT.Data-1.1.4/MAINT.Data/src/msnCP_dev.cpp | 16 - MAINT.Data-1.1.4/MAINT.Data/src/tle.h | 2 19 files changed, 386 insertions(+), 310 deletions(-)
Title: Synergy/Antagonism Analyses of Drug Combinations
Description: A comprehensive synergy/antagonism analyses of drug combinations with
quality graphics and data. The analyses can be performed by Bliss
independence and Loewe additivity models. 'COMBIA' provides improved
statistical analysis and makes only very weak assumption of data
variability while calculating bootstrap intervals (BIs). It is based
on heteroscedasticity controlled resampling (bootstrapping) and includes
a global (omnibus) test. Finally, package saves analyzed data, 2D and 3D
plots ready to use in research publications. 'COMBIA' does not require manual
data entry. Data can be directly input from wetlab experimental platforms for
example fluostar, automated robots etc. One only needs to call a single function,
analyzeCOMBO(), to perform all analysis (examples are provided with sample data).
Author: Muhammad Kashif
Maintainer: Muhammad Kashif <Muhammad.Kashif@medsci.uu.se>
Diff between COMBIA versions 1.0-4 dated 2015-07-26 and 1.0.5 dated 2017-10-23
COMBIA-1.0-4/COMBIA/inst/raw |only COMBIA-1.0-4/COMBIA/man/calculateSynergy.Rd |only COMBIA-1.0.5/COMBIA/DESCRIPTION | 33 COMBIA-1.0.5/COMBIA/MD5 | 60 COMBIA-1.0.5/COMBIA/NAMESPACE | 26 COMBIA-1.0.5/COMBIA/R/COMBIA.R | 2087 ++++++++-------- COMBIA-1.0.5/COMBIA/inst/CITATION |only COMBIA-1.0.5/COMBIA/inst/extdata |only COMBIA-1.0.5/COMBIA/man/analyzeCOMBO.Rd |only COMBIA-1.0.5/COMBIA/man/applyBliss.Rd | 23 COMBIA-1.0.5/COMBIA/man/applyLoewe.Rd | 30 COMBIA-1.0.5/COMBIA/man/cVCal.Rd | 15 COMBIA-1.0.5/COMBIA/man/calculateSi.Rd |only COMBIA-1.0.5/COMBIA/man/combineDataFromMultipleFiles.Rd | 33 COMBIA-1.0.5/COMBIA/man/createUniquePertbs.Rd | 13 COMBIA-1.0.5/COMBIA/man/extractKey.Rd | 31 COMBIA-1.0.5/COMBIA/man/extractReplicateValues.Rd | 25 COMBIA-1.0.5/COMBIA/man/extractValuesFromRange.Rd | 18 COMBIA-1.0.5/COMBIA/man/loeweModel.Rd | 19 COMBIA-1.0.5/COMBIA/man/readFMCAValues.Rd | 39 COMBIA-1.0.5/COMBIA/man/readFile.Rd | 25 COMBIA-1.0.5/COMBIA/man/readFluostarPlates.Rd | 86 COMBIA-1.0.5/COMBIA/man/readMacSynergyValues.Rd | 34 COMBIA-1.0.5/COMBIA/man/readOtherValues.Rd | 47 COMBIA-1.0.5/COMBIA/man/removeOutliers.Rd | 25 COMBIA-1.0.5/COMBIA/man/selectPlate.Rd | 47 COMBIA-1.0.5/COMBIA/man/synAntPlot.Rd | 27 COMBIA-1.0.5/COMBIA/man/synergySignificant.Rd | 25 28 files changed, 1456 insertions(+), 1312 deletions(-)
Title: The Moving Epidemic Method Web Application
Description: Web application created in the Shiny framework for the 'mem' R package.
Author: Jose E. Lozano [aut, cre]
Maintainer: Jose E. Lozano <lozalojo@gmail.com>
Diff between memapp versions 2.5 dated 2017-09-21 and 2.6 dated 2017-10-23
DESCRIPTION | 8 MD5 | 22 R/build.languages.R |only R/get.languages.R |only R/read.language.R |only R/runmemapp.R | 1 README.md | 41 inst/shinyapp/helpers.R | 859 -------------------- inst/shinyapp/lang |only inst/shinyapp/server.R | 2016 +++++++++++++++++++++++++++++++++--------------- inst/shinyapp/ui.R | 343 ++------ man/build.languages.Rd |only man/get.languages.Rd |only man/read.language.Rd |only 14 files changed, 1600 insertions(+), 1690 deletions(-)
Title: Calculate the Compressibility Factor 'z' for Hydrocarbon Gases
Description: Computational algorithms to solve equations and find the
compressibility factor `z` of hydrocarbon gases. Correlations available:
Hall-Yarborough, Dranchuk-AbuKassem, Dranchuk-Purvis-Robinson, Beggs-Brill,
Papp, Shell and an Artificial Neural Network correlation (Ann10) by Kamyab
et al. The package uses the original Standing-Katz chart for statistical
comparison and plotting. Applicable to sweet hydrocarbon gases for now.
Author: Alfonso R. Reyes [aut, cre]
Maintainer: Alfonso R. Reyes <alfonso.reyes@oilgainsanalytics.com>
Diff between zFactor versions 0.1.6 dated 2017-07-03 and 0.1.7 dated 2017-10-23
zFactor-0.1.6/zFactor/data/z_dpvr_7p4t.rda |only zFactor-0.1.6/zFactor/data/z_sk_chart_7p4t.rda |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-4-1.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-4-2.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-4-3.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-4-4.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-4-5.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-4-6.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-4-7.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-6-3.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-6-4.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-6-5.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-6-6.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-6-7.png |only zFactor-0.1.6/zFactor/man/figures/README-unnamed-chunk-7-2.png |only zFactor-0.1.6/zFactor/man/figures/logo.png |only zFactor-0.1.7/zFactor/DESCRIPTION | 20 zFactor-0.1.7/zFactor/MD5 | 197 ++++-- zFactor-0.1.7/zFactor/NAMESPACE | 4 zFactor-0.1.7/zFactor/R/Beggs-Brill.R | 35 - zFactor-0.1.7/zFactor/R/Dranchuk-AbouKassem.R | 24 zFactor-0.1.7/zFactor/R/Papp.R |only zFactor-0.1.7/zFactor/R/Standing-Katz.R | 80 ++ zFactor-0.1.7/zFactor/R/gen_tables.R | 64 +- zFactor-0.1.7/zFactor/R/stats.R | 118 +++- zFactor-0.1.7/zFactor/R/utils.R | 121 +--- zFactor-0.1.7/zFactor/README.md | 126 +++- zFactor-0.1.7/zFactor/build/vignette.rds |binary zFactor-0.1.7/zFactor/data/z_dpr_7p4t.rda |only zFactor-0.1.7/zFactor/data/z_hy_7p4t.rda |binary zFactor-0.1.7/zFactor/data/z_sk_short_7p4t.rda |only zFactor-0.1.7/zFactor/inst/doc/Ann10.R | 5 zFactor-0.1.7/zFactor/inst/doc/Ann10.Rmd | 6 zFactor-0.1.7/zFactor/inst/doc/Ann10.html | 87 +-- zFactor-0.1.7/zFactor/inst/doc/Beggs-Brill.R | 30 - zFactor-0.1.7/zFactor/inst/doc/Beggs-Brill.Rmd | 37 + zFactor-0.1.7/zFactor/inst/doc/Beggs-Brill.html | 282 +++++++--- zFactor-0.1.7/zFactor/inst/doc/Dranchuk-AbouKassem.html | 82 +- zFactor-0.1.7/zFactor/inst/doc/Dranchuk-Purvis-Robinson.Rmd | 5 zFactor-0.1.7/zFactor/inst/doc/Dranchuk-Purvis-Robinson.html | 88 +-- zFactor-0.1.7/zFactor/inst/doc/Hall-Yarborough.html | 74 +- zFactor-0.1.7/zFactor/inst/doc/Papp.R |only zFactor-0.1.7/zFactor/inst/doc/Papp.Rmd |only zFactor-0.1.7/zFactor/inst/doc/Papp.html |only zFactor-0.1.7/zFactor/inst/doc/Plot_StandingKatz_lp.Rmd | 13 zFactor-0.1.7/zFactor/inst/doc/Plot_StandingKatz_lp.html | 52 - zFactor-0.1.7/zFactor/inst/doc/Shell.R | 4 zFactor-0.1.7/zFactor/inst/doc/Shell.Rmd | 5 zFactor-0.1.7/zFactor/inst/doc/Shell.html | 88 +-- zFactor-0.1.7/zFactor/inst/doc/StandingKatz_chart.R | 7 zFactor-0.1.7/zFactor/inst/doc/StandingKatz_chart.Rmd | 19 zFactor-0.1.7/zFactor/inst/doc/StandingKatz_chart.html | 18 zFactor-0.1.7/zFactor/inst/doc/bibliography.bib | 20 zFactor-0.1.7/zFactor/inst/doc/correlation_selection.R |only zFactor-0.1.7/zFactor/inst/doc/correlation_selection.Rmd |only zFactor-0.1.7/zFactor/inst/doc/correlation_selection.html |only zFactor-0.1.7/zFactor/inst/doc/statistics.R |only zFactor-0.1.7/zFactor/inst/doc/statistics.Rmd |only zFactor-0.1.7/zFactor/inst/doc/statistics.html |only zFactor-0.1.7/zFactor/inst/tmp/was_on_data |only zFactor-0.1.7/zFactor/man/DAK.genDataset7p4t.Rd | 5 zFactor-0.1.7/zFactor/man/DPR.genDataset7p4t.Rd | 5 zFactor-0.1.7/zFactor/man/Dranchuk-AbouKassem.Rd | 4 zFactor-0.1.7/zFactor/man/HY.genDataset7p4t.Rd | 5 zFactor-0.1.7/zFactor/man/Papp.Rd |only zFactor-0.1.7/zFactor/man/SK.genDataset7p4t.Rd | 5 zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-10-1.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-11-1.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-12-1.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-12-2.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-13-1.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-13-2.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-14-1.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-5-1.png |binary zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-5-8.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-6-1.png |binary zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-6-2.png |binary zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-7-1.png |binary zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-8-1.png |binary zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-8-2.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-8-3.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-8-4.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-9-1.png |only zFactor-0.1.7/zFactor/man/figures/README-unnamed-chunk-9-2.png |only zFactor-0.1.7/zFactor/man/getStandingKatzCurve.Rd | 10 zFactor-0.1.7/zFactor/man/getStandingKatzData.Rd | 7 zFactor-0.1.7/zFactor/man/getStandingKatzMatrix.Rd | 11 zFactor-0.1.7/zFactor/man/getStandingKatzTpr.Rd | 8 zFactor-0.1.7/zFactor/man/get_z_correlations.Rd | 3 zFactor-0.1.7/zFactor/man/listStandingKatzCurves.Rd | 7 zFactor-0.1.7/zFactor/man/multiplotStandingKatz.Rd | 13 zFactor-0.1.7/zFactor/man/stats_of_z.stats.Rd |only zFactor-0.1.7/zFactor/man/z.plot.range.Rd | 6 zFactor-0.1.7/zFactor/man/z.stats.Rd | 18 zFactor-0.1.7/zFactor/man/z.stats_quantile.Rd |only zFactor-0.1.7/zFactor/tests/testthat/Rplots.pdf |only zFactor-0.1.7/zFactor/tests/testthat/data |only zFactor-0.1.7/zFactor/tests/testthat/sh_16x7.rda |binary zFactor-0.1.7/zFactor/tests/testthat/sh_2x6.rda |binary zFactor-0.1.7/zFactor/tests/testthat/sh_4x13.rda |binary zFactor-0.1.7/zFactor/tests/testthat/sh_4x7.rda |binary zFactor-0.1.7/zFactor/tests/testthat/test-gen_tables.R |only zFactor-0.1.7/zFactor/tests/testthat/test_Ann10.R | 3 zFactor-0.1.7/zFactor/tests/testthat/test_BeggsBrill.R | 4 zFactor-0.1.7/zFactor/tests/testthat/test_DranchukAbuKassem.R | 4 zFactor-0.1.7/zFactor/tests/testthat/test_DranchukPurvisRobinson.R | 5 zFactor-0.1.7/zFactor/tests/testthat/test_HallYarborough.R | 4 zFactor-0.1.7/zFactor/tests/testthat/test_Shell.R | 12 zFactor-0.1.7/zFactor/tests/testthat/test_convertStringToVector.R |only zFactor-0.1.7/zFactor/tests/testthat/test_getStandingKatzCurve.R | 82 ++ zFactor-0.1.7/zFactor/tests/testthat/test_stats.R |only zFactor-0.1.7/zFactor/tests/testthat/test_utils.R |only zFactor-0.1.7/zFactor/vignettes/Ann10.Rmd | 6 zFactor-0.1.7/zFactor/vignettes/Beggs-Brill.Rmd | 37 + zFactor-0.1.7/zFactor/vignettes/Dranchuk-Purvis-Robinson.Rmd | 5 zFactor-0.1.7/zFactor/vignettes/Papay.R |only zFactor-0.1.7/zFactor/vignettes/Papay.html |only zFactor-0.1.7/zFactor/vignettes/Papp.Rmd |only zFactor-0.1.7/zFactor/vignettes/Plot_StandingKatz_lp.Rmd | 13 zFactor-0.1.7/zFactor/vignettes/Shell.Rmd | 5 zFactor-0.1.7/zFactor/vignettes/StandingKatz_chart.Rmd | 19 zFactor-0.1.7/zFactor/vignettes/bibliography.bib | 20 zFactor-0.1.7/zFactor/vignettes/correlation_selection.Rmd |only zFactor-0.1.7/zFactor/vignettes/statistics.Rmd |only 124 files changed, 1227 insertions(+), 810 deletions(-)
Title: R Version of GENetic Optimization Using Derivatives
Description: A genetic algorithm plus derivative optimizer.
Author: Walter R. Mebane, Jr. <wmebane@umich.edu>,
Jasjeet Singh Sekhon <sekhon@berkeley.edu>
Maintainer: Jasjeet Singh Sekhon <sekhon@berkeley.edu>
Diff between rgenoud versions 5.7-12.4 dated 2015-07-20 and 5.8-1.0 dated 2017-10-23
rgenoud-5.7-12.4/rgenoud/src/urans.h |only rgenoud-5.8-1.0/rgenoud/ChangeLog | 6 ++ rgenoud-5.8-1.0/rgenoud/DESCRIPTION | 10 ++-- rgenoud-5.8-1.0/rgenoud/MD5 | 26 +++++++----- rgenoud-5.8-1.0/rgenoud/NAMESPACE | 1 rgenoud-5.8-1.0/rgenoud/R/rgenoud.R | 10 +--- rgenoud-5.8-1.0/rgenoud/THANKS | 2 rgenoud-5.8-1.0/rgenoud/build/vignette.rds |binary rgenoud-5.8-1.0/rgenoud/inst/doc/rgenoud.pdf |binary rgenoud-5.8-1.0/rgenoud/man/genoud.Rd | 56 ++++++++------------------- rgenoud-5.8-1.0/rgenoud/src/frange_ran.cpp | 2 rgenoud-5.8-1.0/rgenoud/src/genoud.cpp | 22 +++++----- rgenoud-5.8-1.0/rgenoud/src/init.c |only rgenoud-5.8-1.0/rgenoud/tests/testthat |only rgenoud-5.8-1.0/rgenoud/tests/testthat.R |only 15 files changed, 62 insertions(+), 73 deletions(-)
Title: Multivariate Analysis of Mixed Data
Description: Implements principal component analysis, orthogonal rotation and multiple
factor analysis for a mixture of quantitative and qualitative variables.
Author: Marie Chavent [aut, cre],
Vanessa Kuentz [aut],
Amaury Labenne [aut],
Benoit Liquet [aut],
Jerome Saracco [aut]
Maintainer: Marie Chavent <Marie.Chavent@u-bordeaux.fr>
Diff between PCAmixdata versions 3.0 dated 2017-07-08 and 3.1 dated 2017-10-23
PCAmixdata-3.0/PCAmixdata/R/nb.level.R |only PCAmixdata-3.0/PCAmixdata/R/svd.triplet.R |only PCAmixdata-3.0/PCAmixdata/README.md |only PCAmixdata-3.0/PCAmixdata/man/Lg.Rd |only PCAmixdata-3.0/PCAmixdata/man/Lg.pond.Rd |only PCAmixdata-3.0/PCAmixdata/man/RV.Rd |only PCAmixdata-3.0/PCAmixdata/man/RV.pond.Rd |only PCAmixdata-3.0/PCAmixdata/man/nb.level.Rd |only PCAmixdata-3.0/PCAmixdata/man/sol.2dim.Rd |only PCAmixdata-3.0/PCAmixdata/man/svd.triplet.Rd |only PCAmixdata-3.1/PCAmixdata/DESCRIPTION | 18 ++-- PCAmixdata-3.1/PCAmixdata/MD5 | 72 +++++++++---------- PCAmixdata-3.1/PCAmixdata/NAMESPACE | 8 -- PCAmixdata-3.1/PCAmixdata/R/Lg.R | 23 +++++- PCAmixdata-3.1/PCAmixdata/R/Lg.pond.R | 23 +++++- PCAmixdata-3.1/PCAmixdata/R/MFAmix.R | 6 + PCAmixdata-3.1/PCAmixdata/R/PCAmix.R | 1 PCAmixdata-3.1/PCAmixdata/R/PCArot.R | 2 PCAmixdata-3.1/PCAmixdata/R/RV.R | 20 +++++ PCAmixdata-3.1/PCAmixdata/R/RV.pond.R | 22 +++++- PCAmixdata-3.1/PCAmixdata/R/plot.MFAmix.R | 63 +++++++++-------- PCAmixdata-3.1/PCAmixdata/R/plot.PCAmix.R | 1 PCAmixdata-3.1/PCAmixdata/R/predict.MFAmix.R | 27 ------- PCAmixdata-3.1/PCAmixdata/R/predict.PCAmix.R | 1 PCAmixdata-3.1/PCAmixdata/R/print.MFAmix.R | 4 - PCAmixdata-3.1/PCAmixdata/R/print.PCAmix.R | 4 - PCAmixdata-3.1/PCAmixdata/R/recodqual.R | 13 ++- PCAmixdata-3.1/PCAmixdata/R/recodquant.R | 24 ++++-- PCAmixdata-3.1/PCAmixdata/R/sol.2dim.R | 12 ++- PCAmixdata-3.1/PCAmixdata/R/summary.MFAmix.R | 1 PCAmixdata-3.1/PCAmixdata/R/summary.PCAmix.R | 1 PCAmixdata-3.1/PCAmixdata/R/supvar.MFAmix.R | 1 PCAmixdata-3.1/PCAmixdata/R/supvar.PCAmix.R | 1 PCAmixdata-3.1/PCAmixdata/R/tab.disjonctif.NA.R | 77 ++++++++++++--------- PCAmixdata-3.1/PCAmixdata/R/utils.R |only PCAmixdata-3.1/PCAmixdata/build |only PCAmixdata-3.1/PCAmixdata/inst/doc |only PCAmixdata-3.1/PCAmixdata/inst/test_package.R | 5 + PCAmixdata-3.1/PCAmixdata/man/plot.MFAmix.Rd | 2 PCAmixdata-3.1/PCAmixdata/man/tab.disjonctif.NA.Rd | 31 ++++---- PCAmixdata-3.1/PCAmixdata/vignettes |only 41 files changed, 279 insertions(+), 184 deletions(-)
Title: Solving Least Squares or Quadratic Programming Problems under
Equality/Inequality Constraints
Description: It contains functions that solve least squares linear
regression problems under linear equality/inequality
constraints. Functions for solving quadratic programming
problems are also available, which transform such problems
into least squares ones first. It is developed based on the
'Fortran' program of Lawson and Hanson (1974, 1995), which is
public domain and available at
<http://www.netlib.org/lawson-hanson>.
Author: Yong Wang [aut, cre],
Charles L. Lawson [aut],
Richard J. Hanson [aut]
Maintainer: Yong Wang <yongwang@auckland.ac.nz>
Diff between lsei versions 1.1-1 dated 2015-10-07 and 1.2-0 dated 2017-10-23
lsei-1.1-1/lsei/Changes |only lsei-1.2-0/lsei/DESCRIPTION | 21 ++++++---- lsei-1.2-0/lsei/MD5 | 16 +++++--- lsei-1.2-0/lsei/NAMESPACE | 8 +++- lsei-1.2-0/lsei/R/lsei.R | 78 ++++++++++++++-------------------------- lsei-1.2-0/lsei/R/utils.R |only lsei-1.2-0/lsei/man/indx.Rd |only lsei-1.2-0/lsei/man/lsei.Rd | 4 +- lsei-1.2-0/lsei/man/matMaxs.Rd |only lsei-1.2-0/lsei/man/nnls.Rd | 79 +++++++++++++++++++++-------------------- lsei-1.2-0/lsei/src/init.c |only lsei-1.2-0/lsei/src/utils.c |only 12 files changed, 99 insertions(+), 107 deletions(-)
Title: Probabilistic Population Projection
Description: Generating population projections for all countries of the world using several probabilistic components, such as total fertility rate and life expectancy.
Author: Hana Sevcikova, Adrian Raftery, Thomas Buettner
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesPop versions 6.2-2 dated 2017-10-11 and 6.2-3 dated 2017-10-23
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/plot_functions.R | 2 +- R/predict.pop.R | 1 + man/bayesPop-package.Rd | 4 ++-- 6 files changed, 18 insertions(+), 12 deletions(-)