Title: The Mittag-Leffler Distribution
Description: Calculates Mittag-Leffler probabilities and the Mittag-Leffler
function, generates Mittag-Leffler random variables,
and fits the Mittag-Leffler distribution to data. Based on the algorithm
by Garrappa, R. (2015) <doi:10.1137/140971191>.
Author: Gurtek Gill [aut], Peter Straka [aut, cre]
Maintainer: Peter Straka <p.straka@unsw.edu.au>
Diff between MittagLeffleR versions 0.1.0 dated 2017-06-15 and 0.2.0 dated 2017-11-07
MittagLeffleR-0.1.0/MittagLeffleR/inst/README.Rmd |only MittagLeffleR-0.1.0/MittagLeffleR/inst/doc/parametrisation.html |only MittagLeffleR-0.1.0/MittagLeffleR/inst/doc/probsNquantiles.html |only MittagLeffleR-0.2.0/MittagLeffleR/DESCRIPTION | 16 MittagLeffleR-0.2.0/MittagLeffleR/MD5 | 42 - MittagLeffleR-0.2.0/MittagLeffleR/NAMESPACE | 1 MittagLeffleR-0.2.0/MittagLeffleR/R/MittagLeffleR.R |only MittagLeffleR-0.2.0/MittagLeffleR/R/MittagLefflerDist.R | 61 - MittagLeffleR-0.2.0/MittagLeffleR/R/MittagLefflerFunc.R | 22 MittagLeffleR-0.2.0/MittagLeffleR/R/logMoments.R |only MittagLeffleR-0.2.0/MittagLeffleR/README.md |only MittagLeffleR-0.2.0/MittagLeffleR/build/vignette.rds |binary MittagLeffleR-0.2.0/MittagLeffleR/inst/doc/MLdist.R | 10 MittagLeffleR-0.2.0/MittagLeffleR/inst/doc/MLdist.Rmd | 14 MittagLeffleR-0.2.0/MittagLeffleR/inst/doc/MLdist.html | 349 +++------- MittagLeffleR-0.2.0/MittagLeffleR/inst/doc/parametrisation.R | 6 MittagLeffleR-0.2.0/MittagLeffleR/inst/doc/parametrisation.Rmd | 44 - MittagLeffleR-0.2.0/MittagLeffleR/inst/doc/parametrisation.pdf |only MittagLeffleR-0.2.0/MittagLeffleR/inst/doc/probsNquantiles.Rmd | 8 MittagLeffleR-0.2.0/MittagLeffleR/inst/doc/probsNquantiles.pdf |only MittagLeffleR-0.2.0/MittagLeffleR/inst/extdata |only MittagLeffleR-0.2.0/MittagLeffleR/man/MittagLeffleR-package.Rd |only MittagLeffleR-0.2.0/MittagLeffleR/man/MittagLeffleR.Rd | 41 - MittagLeffleR-0.2.0/MittagLeffleR/man/logMomentEstimator.Rd |only MittagLeffleR-0.2.0/MittagLeffleR/man/mlf.Rd |only MittagLeffleR-0.2.0/MittagLeffleR/vignettes/MLdist.Rmd | 14 MittagLeffleR-0.2.0/MittagLeffleR/vignettes/parametrisation.Rmd | 44 - MittagLeffleR-0.2.0/MittagLeffleR/vignettes/probsNquantiles.Rmd | 8 28 files changed, 307 insertions(+), 373 deletions(-)
Title: Easily Install and Load the 'Tidyverse'
Description: The 'tidyverse' is a set of packages that work in harmony
because they share common data representations and 'API' design. This
package is designed to make it easy to install and load multiple
'tidyverse' packages in a single step. Learn more about the 'tidyverse'
at <https://tidyverse.org>.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between tidyverse versions 1.1.1 dated 2017-01-27 and 1.2.0 dated 2017-11-07
DESCRIPTION | 32 +++++++++-------- MD5 | 32 ++++++++++------- NAMESPACE | 5 ++ NEWS.md | 31 +++++++++++++++++ R/attach.R |only R/conflicts.R | 54 +++++++++++++++++++----------- R/logo.R |only R/tidyverse.R | 2 - R/update.R | 24 +++++-------- R/utils.R | 38 +++++++++++++-------- R/zzz.R | 14 ++----- README.md | 84 +++++++++++++++++++++++------------------------ build/vignette.rds |binary inst/doc/manifesto.Rmd | 2 - inst/doc/manifesto.html | 10 ++--- man/figures |only man/tidyverse-package.Rd | 8 ++-- man/tidyverse_logo.Rd |only vignettes/manifesto.Rmd | 2 - 19 files changed, 197 insertions(+), 141 deletions(-)
Title: Applications of Empirical Dynamic Modeling from Time Series
Description: A new implementation of EDM algorithms based on research software previously developed for internal use in the Sugihara Lab (UCSD/SIO). Contains C++ compiled objects that use time delay embedding to perform state-space reconstruction and nonlinear forecasting and an R interface to those objects using 'Rcpp'. It supports both the simplex projection method from Sugihara & May (1990) <DOI:10.1038/344734a0> and the S-map algorithm in Sugihara (1994) <DOI:10.1098/rsta.1994.0106>. In addition, this package implements convergent cross mapping as described in Sugihara et al. (2012) <DOI:10.1126/science.1227079> and multiview embedding as described in Ye & Sugihara (2016) <DOI:10.1126/science.aag0863>.
Author: Hao Ye [aut, cre],
Adam Clark [aut],
Ethan Deyle [aut],
Steve Munch [aut],
Oliver Keyes [ctb],
Jun Cai [ctb],
Ethan White [ctb],
Jane Cowles [ctb],
James Stagge [ctb],
Yair Daon [ctb],
George Sugihara [ctb, ccp]
Maintainer: Hao Ye <hao.ye@weecology.org>
Diff between rEDM versions 0.5.4 dated 2016-11-15 and 0.6.5 dated 2017-11-07
rEDM-0.5.4/rEDM/inst/doc/rEDM_tutorial.R |only rEDM-0.5.4/rEDM/inst/doc/rEDM_tutorial.Rmd |only rEDM-0.5.4/rEDM/inst/doc/rEDM_tutorial.html |only rEDM-0.5.4/rEDM/vignettes/figure_1.pdf |only rEDM-0.5.4/rEDM/vignettes/figure_2.pdf |only rEDM-0.5.4/rEDM/vignettes/rEDM_refs.bib |only rEDM-0.5.4/rEDM/vignettes/rEDM_tutorial.Rmd |only rEDM-0.6.5/rEDM/DESCRIPTION | 24 ++- rEDM-0.6.5/rEDM/MD5 | 103 ++++++++------- rEDM-0.6.5/rEDM/NAMESPACE | 7 - rEDM-0.6.5/rEDM/R/RcppExports.R | 2 rEDM-0.6.5/rEDM/R/block_GP.R |only rEDM-0.6.5/rEDM/R/block_lnlp_interface.R | 141 ++++++++------------- rEDM-0.6.5/rEDM/R/ccm_interface.R | 4 rEDM-0.6.5/rEDM/R/lnlp_interface.R | 84 ++++-------- rEDM-0.6.5/rEDM/R/multiview_interface.R | 27 +--- rEDM-0.6.5/rEDM/R/tde_gp.R |only rEDM-0.6.5/rEDM/R/zzz.R | 2 rEDM-0.6.5/rEDM/build/vignette.rds |binary rEDM-0.6.5/rEDM/inst/doc/rEDM-algorithms.ltx |only rEDM-0.6.5/rEDM/inst/doc/rEDM-algorithms.pdf |only rEDM-0.6.5/rEDM/inst/doc/rEDM-coprediction.R |only rEDM-0.6.5/rEDM/inst/doc/rEDM-coprediction.Rmd |only rEDM-0.6.5/rEDM/inst/doc/rEDM-coprediction.html |only rEDM-0.6.5/rEDM/inst/doc/rEDM-tutorial.R |only rEDM-0.6.5/rEDM/inst/doc/rEDM-tutorial.Rmd |only rEDM-0.6.5/rEDM/inst/doc/rEDM-tutorial.html |only rEDM-0.6.5/rEDM/inst/tests/Rplots.pdf |binary rEDM-0.6.5/rEDM/inst/tests/test_block_gp.R |only rEDM-0.6.5/rEDM/inst/tests/test_block_lnlp.R | 2 rEDM-0.6.5/rEDM/inst/tests/test_lnlp.R | 4 rEDM-0.6.5/rEDM/inst/tests/test_tde_gp.R |only rEDM-0.6.5/rEDM/man/block_3sp.Rd | 1 rEDM-0.6.5/rEDM/man/block_gp.Rd |only rEDM-0.6.5/rEDM/man/block_lnlp.Rd | 41 ++---- rEDM-0.6.5/rEDM/man/ccm.Rd | 1 rEDM-0.6.5/rEDM/man/ccm_means.Rd | 1 rEDM-0.6.5/rEDM/man/compute_stats.Rd | 1 rEDM-0.6.5/rEDM/man/e054_succession.Rd | 1 rEDM-0.6.5/rEDM/man/e120_biodiversity.Rd | 1 rEDM-0.6.5/rEDM/man/make_block.Rd | 1 rEDM-0.6.5/rEDM/man/make_surrogate_data.Rd | 1 rEDM-0.6.5/rEDM/man/multiview.Rd | 19 -- rEDM-0.6.5/rEDM/man/paramecium_didinium.Rd | 1 rEDM-0.6.5/rEDM/man/rEDM.Rd | 1 rEDM-0.6.5/rEDM/man/sardine_anchovy_sst.Rd | 1 rEDM-0.6.5/rEDM/man/simplex.Rd | 27 +--- rEDM-0.6.5/rEDM/man/sockeye_returns.Rd | 1 rEDM-0.6.5/rEDM/man/tde_gp.Rd |only rEDM-0.6.5/rEDM/man/tentmap_del.Rd | 1 rEDM-0.6.5/rEDM/man/test_nonlinearity.Rd | 1 rEDM-0.6.5/rEDM/man/thrips_block.Rd | 1 rEDM-0.6.5/rEDM/man/two_species_model.Rd | 1 rEDM-0.6.5/rEDM/src/RcppExports.cpp | 19 ++ rEDM-0.6.5/rEDM/src/block_lnlp.cpp | 37 ++--- rEDM-0.6.5/rEDM/src/block_lnlp.h | 4 rEDM-0.6.5/rEDM/src/forecast_machine.cpp | 158 +++++++++++++++--------- rEDM-0.6.5/rEDM/src/lnlp.cpp | 41 +++--- rEDM-0.6.5/rEDM/src/lnlp.h | 3 rEDM-0.6.5/rEDM/src/xmap.cpp | 12 + rEDM-0.6.5/rEDM/vignettes/figure_1.svg |only rEDM-0.6.5/rEDM/vignettes/figure_2.svg |only rEDM-0.6.5/rEDM/vignettes/rEDM-algorithms.ltx |only rEDM-0.6.5/rEDM/vignettes/rEDM-coprediction.Rmd |only rEDM-0.6.5/rEDM/vignettes/rEDM-tutorial.Rmd |only rEDM-0.6.5/rEDM/vignettes/refs.bib |only 66 files changed, 386 insertions(+), 391 deletions(-)
Title: Patient-Centered Network Meta-Analysis
Description: Performs arm-based network meta-analysis for datasets with binary, continuous, and count outcomes using the Bayesian methods of Zhang et al (2014) <doi:10.1177/1740774513498322> and Lin et al (2017) <doi:10.18637/jss.v080.i05>.
Author: Lifeng Lin, Jing Zhang, and Haitao Chu
Maintainer: Lifeng Lin <linl@stat.fsu.edu>
Diff between pcnetmeta versions 2.5 dated 2017-08-13 and 2.6 dated 2017-11-07
pcnetmeta-2.5/pcnetmeta/R/tryCatch.W.E.R |only pcnetmeta-2.6/pcnetmeta/DESCRIPTION | 8 ++-- pcnetmeta-2.6/pcnetmeta/MD5 | 37 +++++++++---------- pcnetmeta-2.6/pcnetmeta/NAMESPACE | 2 - pcnetmeta-2.6/pcnetmeta/R/model.binary.het.cor.R | 8 ++-- pcnetmeta-2.6/pcnetmeta/R/model.binary.het.eqcor.R | 12 +++--- pcnetmeta-2.6/pcnetmeta/R/model.binary.hom.eqcor.R | 12 +++--- pcnetmeta-2.6/pcnetmeta/R/model.cont.het.cor.R | 8 ++-- pcnetmeta-2.6/pcnetmeta/R/model.cont.het.eqcor.R | 12 +++--- pcnetmeta-2.6/pcnetmeta/R/model.cont.hom.eqcor.R | 12 +++--- pcnetmeta-2.6/pcnetmeta/R/model.followup.het.cor.R | 8 ++-- pcnetmeta-2.6/pcnetmeta/R/model.followup.het.eqcor.R | 12 +++--- pcnetmeta-2.6/pcnetmeta/R/model.followup.hom.eqcor.R | 12 +++--- pcnetmeta-2.6/pcnetmeta/R/model.py.het.cor.R | 8 ++-- pcnetmeta-2.6/pcnetmeta/R/model.py.het.eqcor.R | 12 +++--- pcnetmeta-2.6/pcnetmeta/R/model.py.hom.eqcor.R | 12 +++--- pcnetmeta-2.6/pcnetmeta/R/nma.ab.bin.R | 5 -- pcnetmeta-2.6/pcnetmeta/R/nma.ab.cont.R | 5 -- pcnetmeta-2.6/pcnetmeta/R/nma.ab.followup.R | 5 -- pcnetmeta-2.6/pcnetmeta/R/nma.ab.py.R | 5 -- 20 files changed, 91 insertions(+), 104 deletions(-)
Title: Test Coverage for Packages
Description: Track and report code coverage for your package and (optionally)
upload the results to a coverage service like 'Codecov' <http://codecov.io> or
'Coveralls' <http://coveralls.io>. Code coverage is a measure of the amount of
code being exercised by a set of tests. It is an indirect measure of test
quality and completeness. This package is compatible with any testing
methodology or framework and tracks coverage of both R code and compiled
C/C++/FORTRAN code.
Author: Jim Hester [aut, cre],
Willem Ligtenberg [ctb],
Kirill Müller [ctb],
Henrik Bengtsson [ctb],
Steve Peak [ctb],
Kirill Sevastyanenko [ctb],
Jon Clayden [ctb],
Robert Flight [ctb],
Eric Brown [ctb],
Brodie Gaslam [ctb],
Will Beasley [ctb],
Robert Krzyzanowski [ctb],
Markus Wamser [ctb],
Karl Forner [ctb],
Gergely Daróczi [ctb],
Jouni Helske [ctb],
Kun Ren [ctb],
Jeroen Ooms [ctb],
Ken Williams [ctb],
Chris Campbell [ctb],
David Hugh-Jones [ctb],
Qin Wang [ctb]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between covr versions 3.0.0 dated 2017-06-26 and 3.0.1 dated 2017-11-07
DESCRIPTION | 12 ++-- MD5 | 40 ++++++++------- NAMESPACE | 3 + NEWS.md | 17 ++++++ R/compiled.R | 2 R/covr.R | 1 R/parallel.R | 8 ++- R/parse_data.R | 36 +++++++++++--- R/report.R | 25 +++++++-- R/utils.R | 14 +++++ README.md | 101 +++++++++++++++++++++++----------------- build/vignette.rds |binary inst/doc/how_it_works.Rmd | 2 inst/doc/how_it_works.html | 6 +- inst/rstudio |only man/covr-deprecated.Rd |only man/report.Rd | 11 +--- tests/testthat/test-braceless.R | 18 +++++++ tests/testthat/test-gcov.R | 70 +++++++++++---------------- tests/testthat/test-parallel.R | 1 tests/testthat/test-report.R | 36 +++++++------- vignettes/how_it_works.Rmd | 2 22 files changed, 252 insertions(+), 153 deletions(-)
Title: Find, Map, and Gather Environmental Data and Metadata
Description: A tool for locating, mapping, and gathering environmental data and metadata, worldwide. Users can search for and filter metadata from > 107,000 environmental monitoring stations among 219 countries/territories and >20 networks/organizations via elevation, location, active dates, elements measured (e.g., temperature, precipitation), country, network, and/or known identifier. Future updates to the package will allow the user to obtain datasets from stations within the database.
Author: Josh Roberti [aut, cre],
Cody Flagg [aut],
Lee Stanish [aut],
Robert Lee [aut],
Sam Weintraub [ctb],
Derek Smith [ctb]
Maintainer: Josh Roberti <jaroberti87@gmail.com>
Diff between metScanR versions 1.1.0 dated 2017-10-31 and 1.1.1 dated 2017-11-07
metScanR-1.1.0/metScanR/data/datalist |only metScanR-1.1.1/metScanR/DESCRIPTION | 9 +++--- metScanR-1.1.1/metScanR/MD5 | 23 ++++++++------- metScanR-1.1.1/metScanR/NEWS.md | 6 ++++ metScanR-1.1.1/metScanR/R/getCountry.R | 4 ++ metScanR-1.1.1/metScanR/R/getDates.R | 17 ++++++++++- metScanR-1.1.1/metScanR/R/getID.R | 3 ++ metScanR-1.1.1/metScanR/R/getNetwork.R | 3 ++ metScanR-1.1.1/metScanR/R/mapSiteFinder.R | 30 ++++++++++++++++---- metScanR-1.1.1/metScanR/R/zzz.R | 45 ++++++++++++++++-------------- metScanR-1.1.1/metScanR/man/getId.Rd | 3 ++ metScanR-1.1.1/metScanR/man/getNetwork.Rd | 3 ++ metScanR-1.1.1/metScanR/tests |only 13 files changed, 103 insertions(+), 43 deletions(-)
More information about UniIsoRegression at CRAN
Permanent link
More information about changepointsHD at CRAN
Permanent link
Title: Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Description: Provides an abstraction for managing, installing,
and switching between sets of installed R packages. This allows users to
maintain multiple package libraries simultaneously, e.g. to maintain
strict, package-version-specific reproducibility of many analyses, or
work within a development/production release paradigm. Introduces a
generalized package installation process which supports multiple repository
and non-repository sources and tracks package provenance.
Author: Gabriel Becker[aut, cre]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between switchr versions 0.12.5 dated 2017-11-06 and 0.12.6 dated 2017-11-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/biocversion.R | 4 +++- inst/doc/switchrvign.pdf |binary 4 files changed, 9 insertions(+), 7 deletions(-)
Title: Analytical Tools for Radiation Oncology
Description: Designed for the import, analysis, and visualization of dosimetric and volumetric data in Radiation Oncology, the tools herein enable import of dose-volume histogram information from multiple treatment planning system platforms and 3D structural representations and dosimetric information from 'DICOM-RT' files. These tools also enable subsequent visualization and statistical analysis of these data.
Author: Reid F. Thompson <reid.thompson@gmail.com>
Maintainer: Reid F. Thompson <reid.thompson@gmail.com>
Diff between RadOnc versions 1.1.3 dated 2017-03-28 and 1.1.4 dated 2017-11-07
RadOnc-1.1.3/RadOnc/build |only RadOnc-1.1.4/RadOnc/DESCRIPTION | 8 - RadOnc-1.1.4/RadOnc/MD5 | 13 +- RadOnc-1.1.4/RadOnc/R/DVH.list.R | 2 RadOnc-1.1.4/RadOnc/R/read.DVH.R | 150 +++++++++++++++++++++++++++++++- RadOnc-1.1.4/RadOnc/inst/NEWS.Rd | 16 +++ RadOnc-1.1.4/RadOnc/inst/doc/RadOnc.pdf |binary RadOnc-1.1.4/RadOnc/man/read.DVH.Rd | 4 8 files changed, 178 insertions(+), 15 deletions(-)
Title: Linear Models for Panel Data
Description: A set of estimators and tests for panel data econometrics.
Author: Yves Croissant [aut, cre],
Giovanni Millo [aut],
Kevin Tappe [aut],
Ott Toomet [ctb],
Christian Kleiber [ctb],
Achim Zeileis [ctb],
Arne Henningsen [ctb],
Liviu Andronic [ctb],
Nina Schoenfelder [ctb]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between plm versions 1.6-5 dated 2016-12-02 and 1.6-6 dated 2017-11-07
plm-1.6-5/plm/R/dynformula.R |only plm-1.6-5/plm/R/pgmm.methods.R |only plm-1.6-5/plm/R/pht.R |only plm-1.6-5/plm/R/plm.data.R |only plm-1.6-5/plm/R/plm.list.R |only plm-1.6-5/plm/R/plm.methods.R |only plm-1.6-5/plm/tests/testErrors.R |only plm-1.6-5/plm/tests/testErrors.Rout.save |only plm-1.6-5/plm/tests/testEvaluation.R |only plm-1.6-5/plm/tests/testEvaluation.Rout.save |only plm-1.6-5/plm/tests/testpgmm.R |only plm-1.6-6/plm/DESCRIPTION | 21 plm-1.6-6/plm/MD5 | 309 +- plm-1.6-6/plm/NAMESPACE | 70 plm-1.6-6/plm/NEWS | 373 ++- plm-1.6-6/plm/R/attributes.R | 75 plm-1.6-6/plm/R/cipstest.R | 106 plm-1.6-6/plm/R/deprecated.R |only plm-1.6-6/plm/R/detect_lin_dep_alias.R | 24 plm-1.6-6/plm/R/divers.R | 159 + plm-1.6-6/plm/R/ercomp.R | 718 ++++-- plm-1.6-6/plm/R/fixef.R | 93 plm-1.6-6/plm/R/index.R | 50 plm-1.6-6/plm/R/is.pconsecutive_pbalanced.R | 6 plm-1.6-6/plm/R/lagt.R | 86 plm-1.6-6/plm/R/make.pconsecutive_pbalanced.R | 220 + plm-1.6-6/plm/R/options.R | 6 plm-1.6-6/plm/R/pFormula.R | 343 +- plm-1.6-6/plm/R/panelmodel.R | 31 plm-1.6-6/plm/R/pcce.R | 191 - plm-1.6-6/plm/R/pcdtest.R | 129 - plm-1.6-6/plm/R/pdata.frame.R |only plm-1.6-6/plm/R/pfunctions.R | 1101 ++------- plm-1.6-6/plm/R/pggls.R | 408 +-- plm-1.6-6/plm/R/pgmm.R | 229 + plm-1.6-6/plm/R/pgrangertest.R |only plm-1.6-6/plm/R/piest.R | 404 +-- plm-1.6-6/plm/R/pldv.R |only plm-1.6-6/plm/R/plm.R | 1163 ++++++++-- plm-1.6-6/plm/R/pmg.R | 105 plm-1.6-6/plm/R/pserial.R | 549 ++-- plm-1.6-6/plm/R/ptest.R | 93 plm-1.6-6/plm/R/purtest.R | 269 +- plm-1.6-6/plm/R/pvcm.R | 595 ++--- plm-1.6-6/plm/R/ranef.R |only plm-1.6-6/plm/R/vcovG.R | 217 - plm-1.6-6/plm/R/within_intercept.R | 25 plm-1.6-6/plm/build/vignette.rds |binary plm-1.6-6/plm/data/Cigar.rda |binary plm-1.6-6/plm/data/Crime.rda |binary plm-1.6-6/plm/data/EmplUK.rda |binary plm-1.6-6/plm/data/Gasoline.rda |binary plm-1.6-6/plm/data/Grunfeld.rda |binary plm-1.6-6/plm/data/Hedonic.rda |binary plm-1.6-6/plm/data/LaborSupply.rda |binary plm-1.6-6/plm/data/Males.rda |binary plm-1.6-6/plm/data/Parity.rda |binary plm-1.6-6/plm/data/Produc.rda |binary plm-1.6-6/plm/data/RiceFarms.rda |binary plm-1.6-6/plm/data/Snmesp.rda |binary plm-1.6-6/plm/data/SumHes.rda |binary plm-1.6-6/plm/data/Wages.rda |binary plm-1.6-6/plm/inst/CITATION | 50 plm-1.6-6/plm/inst/doc/plm.R | 64 plm-1.6-6/plm/inst/doc/plm.pdf |binary plm-1.6-6/plm/inst/doc/plm.rnw | 138 - plm-1.6-6/plm/man/Crime.Rd | 37 plm-1.6-6/plm/man/EmplUK.Rd | 3 plm-1.6-6/plm/man/Gasoline.Rd | 4 plm-1.6-6/plm/man/Grunfeld.Rd | 2 plm-1.6-6/plm/man/RiceFarms.Rd | 2 plm-1.6-6/plm/man/cipstest.Rd | 6 plm-1.6-6/plm/man/cortab.Rd |only plm-1.6-6/plm/man/detect_lin_dep_alias.Rd | 15 plm-1.6-6/plm/man/dynformula.Rd | 96 plm-1.6-6/plm/man/ercomp.Rd | 30 plm-1.6-6/plm/man/fixef.plm.Rd | 20 plm-1.6-6/plm/man/index.Rd | 44 plm-1.6-6/plm/man/is.pbalanced.Rd | 2 plm-1.6-6/plm/man/lag_lead_diff.Rd | 14 plm-1.6-6/plm/man/make.pbalanced.Rd | 39 plm-1.6-6/plm/man/model.frame_model.matrix.Rd | 23 plm-1.6-6/plm/man/mtest.Rd | 13 plm-1.6-6/plm/man/nobs.Rd | 2 plm-1.6-6/plm/man/pFormula.Rd | 2 plm-1.6-6/plm/man/pFtest.Rd | 2 plm-1.6-6/plm/man/pbgtest.Rd | 19 plm-1.6-6/plm/man/pbltest.Rd | 2 plm-1.6-6/plm/man/pbsytest.Rd | 113 plm-1.6-6/plm/man/pcce.Rd | 16 plm-1.6-6/plm/man/pcdtest.Rd | 37 plm-1.6-6/plm/man/pdata.frame.Rd | 50 plm-1.6-6/plm/man/pdwtest.Rd | 24 plm-1.6-6/plm/man/pggls.Rd | 36 plm-1.6-6/plm/man/pgmm.Rd | 24 plm-1.6-6/plm/man/pgrangertest.Rd |only plm-1.6-6/plm/man/pht.Rd | 2 plm-1.6-6/plm/man/phtest.Rd | 4 plm-1.6-6/plm/man/pldv.Rd |only plm-1.6-6/plm/man/plm.Rd | 111 plm-1.6-6/plm/man/plm.data.Rd | 12 plm-1.6-6/plm/man/plmtest.Rd | 6 plm-1.6-6/plm/man/pmg.Rd | 16 plm-1.6-6/plm/man/pmodel.response.Rd | 32 plm-1.6-6/plm/man/pooltest.Rd | 10 plm-1.6-6/plm/man/pseries.Rd | 6 plm-1.6-6/plm/man/punbalancedness.Rd | 73 plm-1.6-6/plm/man/purtest.Rd | 67 plm-1.6-6/plm/man/pvcm.Rd | 26 plm-1.6-6/plm/man/pwaldtest.Rd | 37 plm-1.6-6/plm/man/pwartest.Rd | 34 plm-1.6-6/plm/man/pwfdtest.Rd | 57 plm-1.6-6/plm/man/pwtest.Rd | 4 plm-1.6-6/plm/man/ranef.plm.Rd |only plm-1.6-6/plm/man/reexports.Rd |only plm-1.6-6/plm/man/vcovBK.Rd | 11 plm-1.6-6/plm/man/vcovDC.Rd | 11 plm-1.6-6/plm/man/vcovG.Rd | 2 plm-1.6-6/plm/man/vcovHC.Rd | 13 plm-1.6-6/plm/man/vcovNW.Rd | 21 plm-1.6-6/plm/man/vcovSCC.Rd | 11 plm-1.6-6/plm/man/within_intercept.Rd | 7 plm-1.6-6/plm/tests/test_Chow.Rout.save |only plm-1.6-6/plm/tests/test_Errors.R |only plm-1.6-6/plm/tests/test_Errors.Rout.save |only plm-1.6-6/plm/tests/test_Estimators.R | 184 + plm-1.6-6/plm/tests/test_Estimators.Rout.save |only plm-1.6-6/plm/tests/test_Evaluation.R |only plm-1.6-6/plm/tests/test_Evaluation.Rout.save |only plm-1.6-6/plm/tests/test_IV.R |only plm-1.6-6/plm/tests/test_IV.Rout.save |only plm-1.6-6/plm/tests/test_R2_adj_R2.R | 6 plm-1.6-6/plm/tests/test_clubSandwich_interoperability.R |only plm-1.6-6/plm/tests/test_clubSandwich_interoperability.Rout.save |only plm-1.6-6/plm/tests/test_detect_lin_dep_alias.R | 10 plm-1.6-6/plm/tests/test_fitted.plm.R | 58 plm-1.6-6/plm/tests/test_fixef.R | 11 plm-1.6-6/plm/tests/test_fixef_comp_lm_plm.R | 62 plm-1.6-6/plm/tests/test_make.pconsecutive_pbalanced.R | 36 plm-1.6-6/plm/tests/test_misc.R |only plm-1.6-6/plm/tests/test_model.frame.R | 42 plm-1.6-6/plm/tests/test_model.matrix_effects.R | 2 plm-1.6-6/plm/tests/test_model.matrix_pmodel.response.R | 12 plm-1.6-6/plm/tests/test_model.matrix_pmodel.response_NA.R | 34 plm-1.6-6/plm/tests/test_nested.R |only plm-1.6-6/plm/tests/test_nested.Rout.save |only plm-1.6-6/plm/tests/test_pbgtest.R | 16 plm-1.6-6/plm/tests/test_pbsytest_unbalanced.R |only plm-1.6-6/plm/tests/test_pbsytest_unbalanced.Rout.save |only plm-1.6-6/plm/tests/test_pdata.frame_assign_storage_mode.R |only plm-1.6-6/plm/tests/test_pdata.frame_const_allNA_nonfinite.R |only plm-1.6-6/plm/tests/test_pdata.frame_extract_class_est_mod.R | 8 plm-1.6-6/plm/tests/test_pdata.frame_id_index_more.R | 10 plm-1.6-6/plm/tests/test_pdata.frame_subsetting.R | 45 plm-1.6-6/plm/tests/test_pdata.frame_subsetting.Rout.save |only plm-1.6-6/plm/tests/test_pdata.frame_unused_levels.R | 39 plm-1.6-6/plm/tests/test_pdiff_fd.R | 20 plm-1.6-6/plm/tests/test_pdwtest.R |only plm-1.6-6/plm/tests/test_pgmm.R |only plm-1.6-6/plm/tests/test_pgrangertest.R |only plm-1.6-6/plm/tests/test_pgrangertest.Rout.save |only plm-1.6-6/plm/tests/test_phtest_Hausman_regression.R | 26 plm-1.6-6/plm/tests/test_plm.data.R |only plm-1.6-6/plm/tests/test_plmtest_unbalanced.R | 14 plm-1.6-6/plm/tests/test_plmtest_unbalanced.Rout.save | 14 plm-1.6-6/plm/tests/test_preserve_rownames.R | 41 plm-1.6-6/plm/tests/test_punbalancedness.R | 69 plm-1.6-6/plm/tests/test_purtest.R |only plm-1.6-6/plm/tests/test_purtest.Rout.save |only plm-1.6-6/plm/tests/test_pwaldtest.R | 4 plm-1.6-6/plm/tests/test_pwaldtest.Rout.save |only plm-1.6-6/plm/tests/test_pwaldtest_vcovG_attr_cluster.Rout.save |only plm-1.6-6/plm/tests/test_pwfdtest_pwartest.R | 4 plm-1.6-6/plm/tests/test_ranef.R |only plm-1.6-6/plm/tests/test_ranef.Rout.save |only plm-1.6-6/plm/tests/test_residuals_overall_fitted_exp.R |only plm-1.6-6/plm/tests/test_summary.pseries_character_logical_factor.R |only plm-1.6-6/plm/tests/test_vcovG_lin_dep.R | 2 plm-1.6-6/plm/tests/test_within_intercept.R | 23 plm-1.6-6/plm/tests/test_within_intercept.Rout.save |only plm-1.6-6/plm/vignettes/bibliojss.bib | 73 plm-1.6-6/plm/vignettes/plm.rnw | 138 - 182 files changed, 6271 insertions(+), 4402 deletions(-)
More information about ClinicalTrialSummary at CRAN
Permanent link
Title: An Individual-Based Population Genetic Simulation Environment
Description: An interface between R and the metasim simulation engine.
The simulation environment is documented in: "Strand, A.(2002) <DOI:10.1046/j.1471-8286.2002.00208.x> Metasim 1.0: an individual-based environment for simulating population genetics of
complex population dynamics. Mol. Ecol. Notes.
Please see the vignettes CreatingLandscapes and Simulating to get some ideas on how to use the packages.
See the rmetasim vignette to get an overview and to see important changes to the
code in the most recent version.
Author: Allan Strand <stranda@cofc.edu>,
James Niehaus
Maintainer: Allan Strand <stranda@cofc.edu>
Diff between rmetasim versions 3.1.3 dated 2017-09-19 and 3.1.5 dated 2017-11-07
DESCRIPTION | 9 +++++---- MD5 | 18 +++++++++--------- inst/doc/ApplyCarryToStage.html | 4 ++-- inst/doc/CreatingLandscapes.html | 8 ++++---- inst/doc/Simulating.html | 12 ++++++------ src/AlleleObj.cc | 2 +- src/Landscape.cc | 2 +- src/RandLib.cc | 1 - src/const.h | 2 +- src/rmetasim.cc | 2 +- 10 files changed, 30 insertions(+), 30 deletions(-)
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org'
as well as tools to visualize and statistically analyze animal movement data,
among others functions to calculate dynamic Brownian Bridge Movement Models.
Move helps addressing movement ecology questions.
Author: Bart Kranstauber [aut, cre],
Marco Smolla [aut],
Anne K Scharf [aut]
Maintainer: Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>
Diff between move versions 3.0.1 dated 2017-08-23 and 3.0.2 dated 2017-11-07
ChangeLog | 12 +++++++----- DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- build/vignette.rds |binary inst/doc/browseMovebank.pdf |binary inst/doc/move.pdf |binary tests/testthat/Rplots.pdf |only tests/testthat/test.brownian.bridge.dyn.R | 9 ++++++++- tests/testthat/test.dBGB.R | 7 +++++++ tests/testthat/test.emd.R | 3 +-- tests/testthat/test.move.R | 8 +++++--- tests/testthat/test.web.R | 3 ++- 12 files changed, 45 insertions(+), 26 deletions(-)
Title: Generalized Linear Mixed Models via Monte Carlo Likelihood
Approximation
Description: Approximates the likelihood of a generalized linear mixed model using Monte Carlo likelihood approximation. Then maximizes the likelihood approximation to return maximum likelihood estimates, observed Fisher information, and other model information.
Author: Christina Knudson
Maintainer: Christina Knudson <christina@umn.edu>
Diff between glmm versions 1.2.1 dated 2017-08-15 and 1.2.2 dated 2017-11-07
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- R/objfun.R | 1 + build/vignette.rds |binary data/radish2.rda |only inst/doc/intro.pdf |binary man/radish2.Rd |only 7 files changed, 11 insertions(+), 8 deletions(-)
Title: Import 'Epidata' XML Files '.epx'
Description: Import data from 'Epidata' XML files '.epx' and convert it to R data structures.
Author: Jean Pierre Decorps [aut, cre],
David Whiting [aut],
Bruno Granouillac [ctb],
Laura March [ctb]
Maintainer: Jean Pierre Decorps <jp.decorps@epiconcept.fr>
Diff between epxToR versions 0.2-0 dated 2017-03-07 and 0.3-0 dated 2017-11-07
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NAMESPACE | 4 +++- R/read-epx.R | 50 +++++++++++++++++++++++++++++++++++++++++++++----- README.md | 12 ++++++++++++ man/abstract.Rd |only man/read.epx.Rd | 18 +++++------------- 7 files changed, 75 insertions(+), 28 deletions(-)
Title: Routines for Performing Empirical Calibration of Observational
Study Estimates
Description: Routines for performing empirical calibration of observational
study estimates. By using a set of negative control hypotheses we can
estimate the empirical null distribution of a particular observational
study setup. This empirical null distribution can be used to compute a
calibrated p-value, which reflects the probability of observing an
estimated effect size when the null hypothesis is true taking both random
and systematic error into account.
Author: Martijn Schuemie, Marc Suchard
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between EmpiricalCalibration versions 1.3.1 dated 2017-05-16 and 1.3.6 dated 2017-11-07
DESCRIPTION | 10 MD5 | 23 + NAMESPACE | 1 NEWS | 13 + R/ConfidenceIntervalCalibration.R | 75 ++++-- R/EmpiricalCalibrationUsingMcmc.R | 3 R/Plots.R | 331 ++++++++++++++++++++++------ inst/doc/EmpiricalCiCalibrationVignette.pdf |binary inst/doc/EmpiricalPCalibrationVignette.pdf |binary man/fitMcmcNull.Rd | 3 man/plotCalibrationEffect.Rd | 12 - man/plotExpectedType1Error.Rd |only man/plotMcmcTrace.Rd | 3 13 files changed, 363 insertions(+), 111 deletions(-)
More information about EmpiricalCalibration at CRAN
Permanent link
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearization of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow,Theory, vol. I: Methods and Applications; vol. II: Theory. 1953, New York: John Wiley and Sons), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y. G., 2015, <doi:10.1111/rssa.12116>). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.9.10 dated 2017-09-25 and 0.9.11 dated 2017-11-07
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/domain.R | 2 +- R/vardom_othstr.R | 1 + inst/NEWS | 3 +++ man/vardom_othstr.Rd | 6 ++++-- man/vardpoor-package.Rd | 4 ++-- 7 files changed, 21 insertions(+), 15 deletions(-)
Title: Mocking Library for R
Description: The two main functionalities of this package are creating mock
objects (functions) and selectively intercepting calls to a given
function that originate in some other function. It can be used
with any testing framework available for R. Mock objects can
be injected with either this package's own stub() function or a
similar with_mock() facility present in the testthat package.
Author: Noam Finkelstein [aut, cre],
Lukasz Bartnik [aut]
Maintainer: Noam Finkelstein <noam.finkelstein@jhu.edu>
Diff between mockery versions 0.3.0 dated 2016-12-16 and 0.4.0 dated 2017-11-07
mockery-0.3.0/mockery/TODO |only mockery-0.4.0/mockery/DESCRIPTION | 10 - mockery-0.4.0/mockery/MD5 | 23 ++-- mockery-0.4.0/mockery/R/stub.R | 88 ++++++++++++---- mockery-0.4.0/mockery/README.md | 37 ++++++ mockery-0.4.0/mockery/build/vignette.rds |binary mockery-0.4.0/mockery/inst/doc/mocks-and-testthat.html | 1 mockery-0.4.0/mockery/man/call-expectations.Rd | 3 mockery-0.4.0/mockery/man/mock.Rd | 4 mockery-0.4.0/mockery/man/mockery.Rd | 1 mockery-0.4.0/mockery/man/stub.Rd | 6 - mockery-0.4.0/mockery/tests/testthat/test-mock-object.R | 5 mockery-0.4.0/mockery/tests/testthat/test_stub.R | 83 ++++++++++++++- 13 files changed, 215 insertions(+), 46 deletions(-)
Title: Simulating Multistate Movements in River/Heterogeneous
Landscapes
Description: Provides functions to generate and analyze spatially-explicit individual-based multistate movements in rivers,
heterogeneous and homogeneous spaces. This is done by incorporating landscape bias on local behaviour, based on
resistance rasters. Although originally conceived and designed to simulate trajectories of species constrained to
linear habitats/dendritic ecological networks (e.g. river networks), the simulation algorithm is built to be
highly flexible and can be applied to any (aquatic, semi-aquatic or terrestrial) organism, independently on the
landscape in which it moves. Thus, the user will be able to use the package to simulate movements either in
homogeneous landscapes, heterogeneous landscapes (e.g. semi-aquatic animal moving mainly along rivers but also using
the matrix), or even in highly contrasted landscapes (e.g. fish in a river network). The algorithm and its input
parameters are the same for all cases, so that results are comparable. Simulated trajectories can then be used as
mechanistic null models (Potts & Lewis 2014, <DOI:10.1098/rspb.2014.0231>) to test a variety of 'Movement Ecology'
hypotheses (Nathan et al. 2008, <DOI:10.1073/pnas.0800375105>), including landscape effects (e.g. resources,
infrastructures) on animal movement and species site fidelity, or for predictive purposes (e.g. road mortality risk,
dispersal/connectivity). The package should be relevant to explore a broad spectrum of ecological phenomena, such as
those at the interface of animal behaviour, management, landscape and movement ecology, disease and invasive species
spread, and population dynamics.
Author: Lorenzo Quaglietta [aut],
Miguel Porto [aut, cre],
Erida Gjini [ctb]
Maintainer: Miguel Porto <mpbertolo@gmail.com>
Diff between SiMRiv versions 1.0.1 dated 2017-08-17 and 1.0.2 dated 2017-11-07
DESCRIPTION | 44 ++-- MD5 | 34 +-- NAMESPACE | 14 - R/Ops.r | 16 - R/SiMRiv.r | 129 ++++++------ R/estimation.r | 315 ++++++++++++++++++----------- R/internal.r | 133 ++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/SiMRiv.Rnw | 12 - inst/doc/SiMRiv.pdf |binary man/adjustModel.Rd | 6 src/SiMRiv.h | 70 ++++-- src/misc.c | 4 src/raster-fn.c | 66 +++--- src/simulate.c | 541 ++++++++++++++++++++++++++------------------------- tests |only vignettes/SiMRiv.Rnw | 12 - 18 files changed, 774 insertions(+), 622 deletions(-)
Title: SYMPHONY in R
Description: An R interface to the SYMPHONY solver for mixed-integer linear programs.
Author: Reinhard Harter [aut],
Kurt Hornik [aut, cre],
Stefan Theussl [aut],
Cyrille Szymanski [ctb],
Florian Schwendinger [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Rsymphony versions 0.1-27 dated 2017-07-15 and 0.1-28 dated 2017-11-07
DESCRIPTION | 14 ++++++++------ MD5 | 8 ++++---- NAMESPACE | 6 ++++++ R/sparse.R | 45 ++++++++++++++++++++++++++++++++++++++++++++- R/symphony.R | 12 ++++++++---- 5 files changed, 70 insertions(+), 15 deletions(-)
Title: R-Friendly Threading in C++
Description: Provides a C++11-style thread class and thread pool that can safely
be interrupted from R.
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between RcppThread versions 0.1.0 dated 2017-10-27 and 0.1.1 dated 2017-11-07
DESCRIPTION | 6 MD5 | 11 NEWS.md |only README.md | 9 build/vignette.rds |binary inst/doc/RcppThread.html | 472 ++++++++++++-------------------------- inst/include/RcppThread/Rcout.hpp | 2 7 files changed, 168 insertions(+), 332 deletions(-)
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include Sql Server, Oracle,
PostgreSql, Amazon RedShift, Impala, IBM Netezza, Google BigQuery, and Microsoft PDW.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.4.3 dated 2017-09-15 and 1.4.6 dated 2017-11-07
DESCRIPTION | 8 MD5 | 14 NEWS | 11 build/vignette.rds |binary inst/csv/replacementPatterns.csv | 19 inst/doc/UsingSqlRender.pdf |binary inst/java/SqlRender.jar |binary tests/testthat/test-translateSql.R | 1202 ++++++++++++++++++++----------------- 8 files changed, 721 insertions(+), 533 deletions(-)