Title: R Interface to 'Keras'
Description: Interface to 'Keras' <https://keras.io>, a high-level neural
networks API. 'Keras' was developed with a focus on enabling fast experimentation,
supports both convolution based networks and recurrent networks (as well as
combinations of the two), and runs seamlessly on both 'CPU' and 'GPU' devices.
Author: JJ Allaire [aut, cre],
François Chollet [aut, cph],
RStudio [ctb, cph, fnd],
Google [ctb, cph, fnd],
Yuan Tang [ctb, cph],
Daniel Falbel [ctb, cph],
Wouter Van Der Bijl [ctb, cph],
Martin Studer [ctb, cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between keras versions 2.0.8 dated 2017-09-30 and 2.0.9 dated 2017-11-16
keras-2.0.8/keras/man/evaluate.Rd |only keras-2.0.9/keras/DESCRIPTION | 10 keras-2.0.9/keras/MD5 | 228 +++++----- keras-2.0.9/keras/NAMESPACE | 26 + keras-2.0.9/keras/NEWS.md | 62 ++ keras-2.0.9/keras/R/applications.R | 83 ++- keras-2.0.9/keras/R/callbacks.R | 13 keras-2.0.9/keras/R/datasets.R | 94 +++- keras-2.0.9/keras/R/freeze.R |only keras-2.0.9/keras/R/history.R | 2 keras-2.0.9/keras/R/install.R | 4 keras-2.0.9/keras/R/layer-custom.R | 8 keras-2.0.9/keras/R/layer-methods.R | 2 keras-2.0.9/keras/R/layers-convolutional.R | 8 keras-2.0.9/keras/R/layers-core.R | 54 +- keras-2.0.9/keras/R/layers-merge.R | 26 + keras-2.0.9/keras/R/layers-recurrent.R | 120 ++++- keras-2.0.9/keras/R/metrics.R | 35 + keras-2.0.9/keras/R/model-persistence.R | 61 ++ keras-2.0.9/keras/R/model.R | 134 +++++ keras-2.0.9/keras/R/package.R | 25 - keras-2.0.9/keras/R/preprocessing.R | 192 +++++++- keras-2.0.9/keras/R/reexports.R | 19 keras-2.0.9/keras/R/utils.R | 24 - keras-2.0.9/keras/inst/doc/about_keras_models.Rmd | 2 keras-2.0.9/keras/inst/doc/about_keras_models.html | 4 keras-2.0.9/keras/inst/doc/applications.R | 15 keras-2.0.9/keras/inst/doc/applications.Rmd | 16 keras-2.0.9/keras/inst/doc/applications.html | 16 keras-2.0.9/keras/inst/doc/custom_layers.R | 2 keras-2.0.9/keras/inst/doc/custom_layers.Rmd | 2 keras-2.0.9/keras/inst/doc/custom_layers.html | 2 keras-2.0.9/keras/inst/doc/faq.R | 76 +++ keras-2.0.9/keras/inst/doc/faq.Rmd | 164 +++++-- keras-2.0.9/keras/inst/doc/faq.html | 134 ++++- keras-2.0.9/keras/inst/doc/functional_api.Rmd | 4 keras-2.0.9/keras/inst/doc/functional_api.html | 4 keras-2.0.9/keras/inst/doc/getting_started.R | 4 keras-2.0.9/keras/inst/doc/getting_started.Rmd | 6 keras-2.0.9/keras/inst/doc/getting_started.html | 5 keras-2.0.9/keras/inst/doc/sequential_model.Rmd | 4 keras-2.0.9/keras/inst/doc/sequential_model.html | 4 keras-2.0.9/keras/inst/python/kerastools/callback.py | 4 keras-2.0.9/keras/inst/python/kerastools/layer.py | 4 keras-2.0.9/keras/inst/python/kerastools/progbar.py |only keras-2.0.9/keras/man/application_inception_resnet_v2.Rd |only keras-2.0.9/keras/man/application_resnet50.Rd | 2 keras-2.0.9/keras/man/application_vgg.Rd | 2 keras-2.0.9/keras/man/compile.Rd | 11 keras-2.0.9/keras/man/dataset_boston_housing.Rd | 9 keras-2.0.9/keras/man/dataset_cifar10.Rd | 1 keras-2.0.9/keras/man/dataset_cifar100.Rd | 1 keras-2.0.9/keras/man/dataset_fashion_mnist.Rd |only keras-2.0.9/keras/man/dataset_imdb.Rd | 12 keras-2.0.9/keras/man/dataset_mnist.Rd | 1 keras-2.0.9/keras/man/dataset_reuters.Rd | 1 keras-2.0.9/keras/man/evaluate.keras.engine.training.Model.Rd |only keras-2.0.9/keras/man/evaluate_generator.Rd | 9 keras-2.0.9/keras/man/export_savedmodel.keras.engine.training.Model.Rd |only keras-2.0.9/keras/man/fit.Rd | 12 keras-2.0.9/keras/man/fit_generator.Rd | 13 keras-2.0.9/keras/man/fit_image_data_generator.Rd | 4 keras-2.0.9/keras/man/fit_text_tokenizer.Rd | 7 keras-2.0.9/keras/man/freeze_weights.Rd |only keras-2.0.9/keras/man/generator_next.Rd |only keras-2.0.9/keras/man/get_config.Rd | 6 keras-2.0.9/keras/man/get_layer.Rd | 6 keras-2.0.9/keras/man/image_load.Rd | 13 keras-2.0.9/keras/man/image_to_array.Rd | 23 - keras-2.0.9/keras/man/imagenet_preprocess_input.Rd | 13 keras-2.0.9/keras/man/implementation.Rd | 2 keras-2.0.9/keras/man/keras_array.Rd | 9 keras-2.0.9/keras/man/keras_model.Rd | 5 keras-2.0.9/keras/man/keras_model_sequential.Rd | 6 keras-2.0.9/keras/man/layer_add.Rd | 2 keras-2.0.9/keras/man/layer_average.Rd | 2 keras-2.0.9/keras/man/layer_concatenate.Rd | 2 keras-2.0.9/keras/man/layer_cudnn_gru.Rd |only keras-2.0.9/keras/man/layer_cudnn_lstm.Rd |only keras-2.0.9/keras/man/layer_dot.Rd | 2 keras-2.0.9/keras/man/layer_flatten.Rd | 11 keras-2.0.9/keras/man/layer_gru.Rd | 14 keras-2.0.9/keras/man/layer_input.Rd | 13 keras-2.0.9/keras/man/layer_lstm.Rd | 17 keras-2.0.9/keras/man/layer_maximum.Rd | 1 keras-2.0.9/keras/man/layer_minimum.Rd |only keras-2.0.9/keras/man/layer_multiply.Rd | 3 keras-2.0.9/keras/man/layer_separable_conv_2d.Rd | 17 keras-2.0.9/keras/man/layer_simple_rnn.Rd | 14 keras-2.0.9/keras/man/layer_subtract.Rd | 3 keras-2.0.9/keras/man/metric_binary_accuracy.Rd | 40 + keras-2.0.9/keras/man/multi-assign.Rd |only keras-2.0.9/keras/man/multi_gpu_model.Rd |only keras-2.0.9/keras/man/pop_layer.Rd | 5 keras-2.0.9/keras/man/predict.keras.engine.training.Model.Rd | 7 keras-2.0.9/keras/man/predict_generator.Rd | 6 keras-2.0.9/keras/man/predict_on_batch.Rd | 6 keras-2.0.9/keras/man/predict_proba.Rd | 6 keras-2.0.9/keras/man/reexports.Rd | 8 keras-2.0.9/keras/man/save_text_tokenizer.Rd |only keras-2.0.9/keras/man/sequences_to_matrix.Rd | 1 keras-2.0.9/keras/man/summary.keras.engine.training.Model.Rd | 6 keras-2.0.9/keras/man/text_tokenizer.Rd | 1 keras-2.0.9/keras/man/texts_to_matrix.Rd | 1 keras-2.0.9/keras/man/texts_to_sequences.Rd | 1 keras-2.0.9/keras/man/texts_to_sequences_generator.Rd | 1 keras-2.0.9/keras/man/train_on_batch.Rd | 6 keras-2.0.9/keras/tests/testthat/digit2.jpeg |only keras-2.0.9/keras/tests/testthat/digit_resized.jpeg |only keras-2.0.9/keras/tests/testthat/test-custom-layers.R | 3 keras-2.0.9/keras/tests/testthat/test-freeze.R |only keras-2.0.9/keras/tests/testthat/test-generators.R | 9 keras-2.0.9/keras/tests/testthat/test-layer-methods.R | 3 keras-2.0.9/keras/tests/testthat/test-layers.R | 13 keras-2.0.9/keras/tests/testthat/test-metrics.R | 4 keras-2.0.9/keras/tests/testthat/test-model-persistence.R | 12 keras-2.0.9/keras/tests/testthat/test-preprocessing.R | 29 + keras-2.0.9/keras/vignettes/about_keras_models.Rmd | 2 keras-2.0.9/keras/vignettes/applications.Rmd | 16 keras-2.0.9/keras/vignettes/custom_layers.Rmd | 2 keras-2.0.9/keras/vignettes/faq.Rmd | 164 +++++-- keras-2.0.9/keras/vignettes/functional_api.Rmd | 4 keras-2.0.9/keras/vignettes/getting_started.Rmd | 6 keras-2.0.9/keras/vignettes/sequential_model.Rmd | 4 124 files changed, 1749 insertions(+), 588 deletions(-)
Title: Soil Database Interface
Description: A collection of functions for reading data from USDA-NCSS soil databases.
Author: D.E. Beaudette and J. Skovlin, and S.M. Roecker
Maintainer: D.E. Beaudette <dylan.beaudette@ca.usda.gov>
Diff between soilDB versions 1.8-7 dated 2016-11-10 and 1.8.14 dated 2017-11-16
.Rinstignore | 4 DESCRIPTION | 16 MD5 | 77 ++- NAMESPACE | 23 - NEWS | 25 + R/KSSL_VG_model.R |only R/SDA_query.R | 568 ++++++++++++++--------------- R/fetchHenry.R | 34 + R/fetchNASIS.R | 77 ++- R/fetchNASIS_pedons.R |only R/fetchSCAN.R | 90 ++++ R/get_colors_from_NASIS_db.R | 14 R/get_component_from_LIMS.R |only R/get_component_from_SDA.R |only R/get_cosoilmoist_from_LIMS.R |only R/get_cosoilmoist_from_NASIS.R |only R/get_cosoilmoist_from_SDA.R |only R/get_extended_data_from_NASIS_db.R | 3 R/get_lablayer_data_from_NASIS_db.R | 39 + R/get_phlabresults_data_from_NASIS_db.R |only R/get_phorizon_from_NASIS_db.R |only R/get_projectmapunit_from_NASIS.R |only R/get_site_data_from_NASIS_db.R | 9 R/mix_and_clean_colors.R | 100 +++-- R/nasis_component_data.R | 286 ++++++++++++-- R/parseWebReport.R |only R/seriesExtent.R | 13 R/simplfyFragmentData.R | 290 +++++++------- R/simplifyColorData.R | 165 ++++---- R/uncode.R |only R/utils.R | 291 ++++++++++++-- data/andic.subset.rda |binary data/cisne.rda |binary data/gSSURGO.chunk.rda |binary data/gopheridge.rda |binary data/loafercreek.rda |binary data/metadata.rda |only man/KSSL_VG_model.Rd |only man/fetchHenry.Rd | 7 man/fetchKSSL.Rd | 2 man/fetchNASIS.Rd | 32 + man/fetchSCAN.Rd | 4 man/fetchSDA_component.Rd |only man/get_colors_from_NASIS_db.Rd | 4 man/get_colors_from_pedon_db.Rd | 2 man/get_phlabresults_data_from_NASIS_db.Rd |only man/loafercreek.Rd | 1 man/parseWebReport.Rd |only man/simplifyColorData.Rd |only man/uncode.Rd |only 50 files changed, 1431 insertions(+), 745 deletions(-)
Title: Construct, Evaluate and Plot Value and Utility Functions
Description: Construct and plot objective hierarchies and associated value and utility functions.
Evaluate the values and utilities and visualize the results as colored objective hierarchies or tables.
Visualize uncertainty by plotting median and quantile intervals within the nodes of objective hierarchies.
Get numerical results of the evaluations in standard R data types for further processing.
Author: Peter Reichert <peter.reichert@eawag.ch>
with contributions by Nele Schuwirth <nele.schuwirth@eawag.ch>
Maintainer: Peter Reichert <peter.reichert@eawag.ch>
Diff between utility versions 1.4.1 dated 2017-05-09 and 1.4.2 dated 2017-11-16
DESCRIPTION | 10 +++---- MD5 | 38 ++++++++++++++-------------- R/utility.plot.r | 25 +++++++++--------- inst/NEWS | 10 +++++++ man/figures/aggregationadd.pdf |binary man/figures/aggregationaddmin.pdf |binary man/figures/aggregationaddpower.pdf |binary man/figures/aggregationaddsplitpower.pdf | 6 ++-- man/figures/aggregationbonusmalus.pdf |binary man/figures/aggregationgeo.pdf | 6 ++-- man/figures/aggregationharmo.pdf | 6 ++-- man/figures/aggregationmax.pdf |binary man/figures/aggregationmin.pdf |binary man/figures/aggregationmix.pdf | 6 ++-- man/figures/aggregationmult.pdf |binary man/figures/aggregationrevaddpower.pdf | 6 ++-- man/figures/aggregationrevaddsplitpower.pdf |binary man/figures/aggregationrevgeo.pdf | 6 ++-- man/figures/aggregationrevharmo.pdf | 6 ++-- man/utility-package.Rd | 4 +- 20 files changed, 70 insertions(+), 59 deletions(-)
Title: Rmetrics - Chronological and Calendar Objects
Description: The 'timeDate' class fulfils the conventions of the ISO 8601
standard as well as of the ANSI C and POSIX standards. Beyond
these standards it provides the "Financial Center" concept
which allows to handle data records collected in different time
zones and mix them up to have always the proper time stamps with
respect to your personal financial center, or alternatively to the GMT
reference time. It can thus also handle time stamps from historical
data records from the same time zone, even if the financial
centers changed day light saving times at different calendar
dates.
Author: Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb],
Martin Maechler [ctb],
Joe W. Byers [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between timeDate versions 3012.100 dated 2015-01-23 and 3042.101 dated 2017-11-16
timeDate |only 1 file changed
Title: R Interface to 'TensorFlow'
Description: Interface to 'TensorFlow' <https://www.tensorflow.org/>,
an open source software library for numerical computation using data
flow graphs. Nodes in the graph represent mathematical operations,
while the graph edges represent the multidimensional data arrays
(tensors) communicated between them. The flexible architecture allows
you to deploy computation to one or more 'CPUs' or 'GPUs' in a desktop,
server, or mobile device with a single 'API'. 'TensorFlow' was originally
developed by researchers and engineers working on the Google Brain Team
within Google's Machine Intelligence research organization for the
purposes of conducting machine learning and deep neural networks research,
but the system is general enough to be applicable in a wide variety
of other domains as well.
Author: JJ Allaire [aut, cre],
RStudio [cph, fnd],
Yuan Tang [aut, cph],
Dirk Eddelbuettel [ctb, cph],
Nick Golding [ctb, cph],
Google Inc. [ctb, cph] (Examples and Tutorials)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between tensorflow versions 1.4 dated 2017-09-27 and 1.4.1 dated 2017-11-16
DESCRIPTION | 10 +- MD5 | 26 ++++-- NAMESPACE | 6 + R/estimator-generics.R |only R/extraction.R |only R/generics.R | 139 ++--------------------------------- R/install.R | 130 +++++++++++++++++++++++++------- R/reexports.R | 3 R/save.R |only R/tensorboard.R | 7 - man/evaluate.Rd |only man/export_savedmodel.Rd |only man/install_tensorflow.Rd | 6 + man/reexports.Rd | 4 - man/train.Rd |only man/train_and_evaluate.Rd |only man/view_savedmodel.Rd |only tests/testthat/test-extract-syntax.R | 123 ++++++++++++++++++++++++++++++ 18 files changed, 271 insertions(+), 183 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Some custom inputs widgets to use in Shiny applications, like a toggle switch to replace checkboxes. And other components to pimp your apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
Silvio Moreto [ctb, cph] (bootstrap-select),
Ana Carolina [ctb, cph] (bootstrap-select),
caseyjhol [ctb, cph] (bootstrap-select),
Matt Bryson [ctb, cph] (bootstrap-select),
t0xicCode [ctb, cph] (bootstrap-select),
Mattia Larentis [ctb, cph] (Bootstrap Switch),
Emanuele Marchi [ctb, cph] (Bootstrap Switch),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Flatlogic [cph] (Awesome Bootstrap Checkbox),
mouse0270 [ctb, cph] (Material Design Switch),
Tristan Edwards [ctb, cph] (SweetAlert),
Fabian Lindfors [ctb, cph] (multi.js),
David Granjon [ctb] (jQuery Knob shiny interface),
Anthony Terrien [ctb, cph] (jQuery Knob),
Daniel Eden [ctb, cph] (animate.css),
Ganapati V S [ctb, cph] (bttn.css),
Brian Grinstead [ctb, cph] (Spectrum),
Lokesh Rajendran [ctb, cph] (pretty-checkbox)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.3.6 dated 2017-10-19 and 0.4.0 dated 2017-11-16
shinyWidgets-0.3.6/shinyWidgets/inst/examples/garbage |only shinyWidgets-0.3.6/shinyWidgets/inst/www/switchInput/css |only shinyWidgets-0.3.6/shinyWidgets/inst/www/switchInput/js |only shinyWidgets-0.4.0/shinyWidgets/DESCRIPTION | 20 shinyWidgets-0.4.0/shinyWidgets/LICENSE | 103 shinyWidgets-0.4.0/shinyWidgets/MD5 | 122 shinyWidgets-0.4.0/shinyWidgets/NAMESPACE | 15 shinyWidgets-0.4.0/shinyWidgets/NEWS.md | 16 shinyWidgets-0.4.0/shinyWidgets/R/attachShinyWidgetsDep.R | 39 shinyWidgets-0.4.0/shinyWidgets/R/input-actiongroupbuttons.R | 143 shinyWidgets-0.4.0/shinyWidgets/R/input-awesomecheckbox.R | 13 shinyWidgets-0.4.0/shinyWidgets/R/input-awesomeradio.R | 11 shinyWidgets-0.4.0/shinyWidgets/R/input-knob.R |only shinyWidgets-0.4.0/shinyWidgets/R/input-pretty.R |only shinyWidgets-0.4.0/shinyWidgets/R/input-radiogroupbuttons.R | 2 shinyWidgets-0.4.0/shinyWidgets/R/input-spectrum.R |only shinyWidgets-0.4.0/shinyWidgets/R/sw-dropdown.R | 3 shinyWidgets-0.4.0/shinyWidgets/R/utils.R | 15 shinyWidgets-0.4.0/shinyWidgets/README.md | 61 shinyWidgets-0.4.0/shinyWidgets/inst/examples/jQueryKnob |only shinyWidgets-0.4.0/shinyWidgets/inst/examples/shinyWidgets/server.R | 6 shinyWidgets-0.4.0/shinyWidgets/inst/examples/shinyWidgets/ui.R | 233 + shinyWidgets-0.4.0/shinyWidgets/inst/images/knobInput.png |only shinyWidgets-0.4.0/shinyWidgets/inst/images/pretty.png |only shinyWidgets-0.4.0/shinyWidgets/inst/www/animate/LICENSE | 42 shinyWidgets-0.4.0/shinyWidgets/inst/www/animate/animate-config.json | 242 - shinyWidgets-0.4.0/shinyWidgets/inst/www/animate/animate.min.css | 20 shinyWidgets-0.4.0/shinyWidgets/inst/www/awesomeRadioCheckbox/LICENSE.txt | 40 shinyWidgets-0.4.0/shinyWidgets/inst/www/bttn/bttn.min.css | 20 shinyWidgets-0.4.0/shinyWidgets/inst/www/favButton/mo.min.js | 26 shinyWidgets-0.4.0/shinyWidgets/inst/www/jquery-knob |only shinyWidgets-0.4.0/shinyWidgets/inst/www/multi/multi.min.js | 2 shinyWidgets-0.4.0/shinyWidgets/inst/www/pretty-checkbox |only shinyWidgets-0.4.0/shinyWidgets/inst/www/selectPicker/LICENSE.txt | 42 shinyWidgets-0.4.0/shinyWidgets/inst/www/selectPicker/js/bootstrap-select.min.js | 16 shinyWidgets-0.4.0/shinyWidgets/inst/www/selectPicker/picker-bindings.js | 3 shinyWidgets-0.4.0/shinyWidgets/inst/www/shinyWidgets-bindings.min.js | 2 shinyWidgets-0.4.0/shinyWidgets/inst/www/spectrum |only shinyWidgets-0.4.0/shinyWidgets/inst/www/sw-dropdown/sw-dropdown.css | 46 shinyWidgets-0.4.0/shinyWidgets/inst/www/sweetAlert/LICENSE.txt | 44 shinyWidgets-0.4.0/shinyWidgets/inst/www/sweetAlert/css/sweetalert.css | 1864 +++++----- shinyWidgets-0.4.0/shinyWidgets/inst/www/switchInput/LICENSE.txt | 42 shinyWidgets-0.4.0/shinyWidgets/inst/www/switchInput/bootstrap-switch-3.3.2 |only shinyWidgets-0.4.0/shinyWidgets/inst/www/switchInput/bootstrap-switch-3.3.4 |only shinyWidgets-0.4.0/shinyWidgets/inst/www/switchInput/switch-bindings.js | 5 shinyWidgets-0.4.0/shinyWidgets/inst/www/uglify.R | 1 shinyWidgets-0.4.0/shinyWidgets/man/actionGroupButtons.Rd | 45 shinyWidgets-0.4.0/shinyWidgets/man/knobInput.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/prettyCheckbox.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/prettyCheckboxGroup.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/prettyRadioButtons.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/prettySwitch.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/prettyToggle.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/spectrumInput.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/updateKnobInput.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/updatePrettyCheckbox.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/updatePrettyCheckboxGroup.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/updatePrettyRadioButtons.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/updatePrettySwitch.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/updatePrettyToggle.Rd |only shinyWidgets-0.4.0/shinyWidgets/man/updateSpectrumInput.Rd |only shinyWidgets-0.4.0/shinyWidgets/tests/testthat/test-updateAwesomeCheckboxGroup.R | 3 shinyWidgets-0.4.0/shinyWidgets/tests/testthat/test-updateAwesomeRadio.R | 1 63 files changed, 1938 insertions(+), 1370 deletions(-)
Title: Regression Estimation and Presentation
Description: A collection of functions for interpretation and presentation
of regression analysis. These functions are used
to produce the statistics lectures in
<http://pj.freefaculty.org/guides>. Includes regression
diagnostics, regression tables, and plots of interactions and
"moderator" variables. The emphasis is on "mean-centered" and
"residual-centered" predictors. The vignette 'rockchalk' offers a
fairly comprehensive overview. The vignette 'Rstyle' has advice
about coding in R. The package title 'rockchalk' refers to our
school motto, 'Rock Chalk Jayhawk, Go K.U.'.
Author: Paul E. Johnson <pauljohn@ku.edu>
Maintainer: Paul E. Johnson <pauljohn@ku.edu>
Diff between rockchalk versions 1.8.101 dated 2016-02-24 and 1.8.109 dated 2017-11-16
DESCRIPTION | 12 MD5 | 196 +++++++-------- NAMESPACE | 3 R/dir.create.unique.R |only R/genCorrelatedData.R | 224 +++++++++++++---- R/mcDiagnose.R | 2 R/outreg.R | 542 +++--------------------------------------- R/pctable.R | 11 R/plotCurves.R | 4 R/plotSlopes.R | 8 R/summarize.R | 396 +++++++++++++++++++++++------- R/utils.R | 66 +---- build/vignette.rds |binary data/cheating.RData |binary data/religioncrime.RData |binary inst/ChangeLog | 37 ++ inst/doc/Rchaeology.R | 74 ++--- inst/doc/Rchaeology.Rnw | 107 -------- inst/doc/Rchaeology.pdf |binary inst/doc/Rstyle.R | 8 inst/doc/Rstyle.Rnw | 70 ----- inst/doc/Rstyle.pdf |binary inst/doc/rockchalk.R | 52 ++-- inst/doc/rockchalk.Rnw | 74 ----- inst/doc/rockchalk.pdf |binary inst/examples/addLines-ex.R | 29 +- inst/examples/summarize-ex.R | 157 +++--------- man/addLines.Rd | 30 +- man/centerNumerics.Rd | 1 man/centralValues.Rd | 1 man/cheating.Rd | 7 man/checkIntFormat.Rd | 4 man/checkPosDef.Rd | 1 man/combineLevels.Rd | 1 man/cutByQuantile.Rd | 1 man/cutBySD.Rd | 1 man/cutByTable.Rd | 1 man/dir.create.unique.Rd | 26 +- man/focalVals.Rd | 7 man/formatNumericSummaries.Rd |only man/formatVC.Rd | 1 man/genCorrelatedData.Rd | 1 man/genCorrelatedData2.Rd | 51 ++- man/genX.Rd |only man/getAuxRsq.Rd | 1 man/getDeltaRsquare.Rd | 1 man/getFocal.Rd | 4 man/getPartialCor.Rd | 1 man/getVIF.Rd | 1 man/kurtosis.Rd | 16 - man/lazyCor.Rd | 1 man/lazyCov.Rd | 1 man/lmAuxiliary.Rd | 1 man/magRange.Rd | 1 man/makeSymmetric.Rd | 1 man/makeVec.Rd | 1 man/mcDiagnose.Rd | 1 man/mcGraph.Rd | 1 man/meanCenter.Rd | 7 man/model.data.Rd | 1 man/model.data.default.Rd | 1 man/mvrnorm.Rd | 7 man/newdata.Rd | 7 man/outreg.Rd | 15 - man/outreg0.Rd | 1 man/outreg2HTML.Rd | 1 man/padW0.Rd | 1 man/pctable.Rd | 19 - man/perspEmpty.Rd | 1 man/plot.testSlopes.Rd | 1 man/plotCurves.Rd | 1 man/plotFancy.Rd | 1 man/plotPlane.Rd | 7 man/plotSeq.Rd | 1 man/plotSlopes.Rd | 7 man/predictCI.Rd | 1 man/predictOMatic.Rd | 1 man/print.factorSummaries.Rd | 10 man/print.pctable.Rd | 1 man/print.summarize.Rd |only man/print.summary.pctable.Rd | 1 man/religioncrime.Rd | 1 man/residualCenter.Rd | 9 man/rockchalk-package.Rd | 9 man/skewness.Rd | 4 man/standardize.Rd | 7 man/summarize.Rd | 221 +++++++---------- man/summarizeFactors.Rd | 17 - man/summarizeNumerics.Rd | 64 ++-- man/summary.factor.Rd | 16 - man/summary.pctable.Rd | 1 man/testSlopes.Rd | 7 man/vech2Corr.Rd | 13 - man/vech2mat.Rd | 1 vignettes/Rchaeology.Rnw | 107 -------- vignettes/Rchaeology.lyx | 27 +- vignettes/Rstyle.Rnw | 70 ----- vignettes/Rstyle.lyx | 2 vignettes/breakurl.sty |only vignettes/plots |only vignettes/rockchalk.Rnw | 74 ----- vignettes/rockchalk.lyx | 99 ++++--- 102 files changed, 1226 insertions(+), 1854 deletions(-)
Title: Quickly Get Datetime Data Ready for Analysis
Description: Transforms datetime data into a format ready for analysis.
It offers two core functionalities; aggregating data to a higher level interval
(thicken) and imputing records where observations were absent (pad).
Author: Edwin Thoen
Maintainer: Edwin Thoen <edwinthoen@gmail.com>
Diff between padr versions 0.3.0 dated 2017-05-15 and 0.4.0 dated 2017-11-16
DESCRIPTION | 18 +-- MD5 | 101 ++++++++++++------- NAMESPACE | 9 + NEWS.md | 50 +++++++++ R/RcppExports.R | 4 R/closest_weekday.R |only R/fill_functions.R | 36 ++---- R/formatting_funcs.R |only R/get_interval.R | 89 ++++++++++++----- R/helpers.R | 11 ++ R/pad.R | 172 +++++++++++++++++++++------------ R/pad_cust.R |only R/pad_int.R | 20 +-- R/span.R | 103 ++++++++++++++++++- R/span_date.R |only R/subset_span.R |only R/thicken.R | 114 +++++++++++++-------- R/thicken_cust.R |only R/thicken_helpers.R | 17 +-- build/vignette.rds |binary inst/doc/padr.R | 62 +++++++---- inst/doc/padr.Rmd | 93 +++++++++++------ inst/doc/padr.html | 159 ++++++++++++++++++------------ inst/doc/padr_custom.R |only inst/doc/padr_custom.Rmd |only inst/doc/padr_custom.html |only inst/doc/padr_implementation.R | 9 - inst/doc/padr_implementation.Rmd | 9 - inst/doc/padr_implementation.html | 13 +- man/center_interval.Rd |only man/closest_weekday.Rd |only man/fill_by_function.Rd | 2 man/fill_by_prevalent.Rd | 2 man/fill_by_value.Rd | 2 man/format_interval.Rd |only man/get_interval.Rd | 4 man/pad.Rd | 44 ++++---- man/pad_cust.Rd |only man/pad_int.Rd | 9 - man/span_around.Rd |only man/span_date.Rd |only man/span_time.Rd |only man/subset_span.Rd |only man/thicken.Rd | 21 ++-- man/thicken_cust.Rd |only src/RcppExports.cpp | 4 src/round_down_core.cpp | 6 - src/round_up_core.cpp | 2 tests/testthat/test_closest_weekday.R |only tests/testthat/test_fill_functions.R | 20 +-- tests/testthat/test_formatting_funcs.R |only tests/testthat/test_get_interval.R | 11 ++ tests/testthat/test_helpers.R | 4 tests/testthat/test_pad.R | 70 ++++++++++++- tests/testthat/test_pad_cust.R |only tests/testthat/test_pad_int.R | 9 + tests/testthat/test_span.R | 45 ++++++++ tests/testthat/test_span_date.R |only tests/testthat/test_subset_span.R |only tests/testthat/test_thicken.R | 19 +++ tests/testthat/test_thicken_cust.R |only vignettes/padr.Rmd | 93 +++++++++++------ vignettes/padr_custom.Rmd |only vignettes/padr_implementation.Rmd | 9 - 64 files changed, 1000 insertions(+), 465 deletions(-)
Title: Model-Based Dose-Escalation Trials
Description: User-friendly Shiny apps for designing and evaluating phase I cancer clinical trials, with the aim to estimate the maximum tolerated dose (MTD) of a novel drug, using a Bayesian decision procedure based on logistic regression.
Author: Philip Pallmann [aut, cre],
Fang Wan [aut]
Maintainer: Philip Pallmann <pallmannp@cardiff.ac.uk>
Diff between modest versions 0.1 dated 2017-06-28 and 0.3-1 dated 2017-11-16
modest-0.1/modest/inst/Conduct/report.Rnw |only modest-0.1/modest/inst/Design/a.Rnw |only modest-0.3-1/modest/DESCRIPTION | 19 modest-0.3-1/modest/MD5 | 31 modest-0.3-1/modest/NAMESPACE | 2 modest-0.3-1/modest/build |only modest-0.3-1/modest/inst/CITATION | 6 modest-0.3-1/modest/inst/Conduct/ConductReport.Rnw |only modest-0.3-1/modest/inst/Conduct/app.R | 795 +++++++---- modest-0.3-1/modest/inst/Conduct/mainDoseEscalation.R | 175 +- modest-0.3-1/modest/inst/Design/DesignReport.Rnw |only modest-0.3-1/modest/inst/Design/app.R | 1285 ++++++++++++------ modest-0.3-1/modest/inst/Design/mainDoseEscalation.R | 175 +- modest-0.3-1/modest/inst/NEWS | 28 modest-0.3-1/modest/inst/doc |only modest-0.3-1/modest/man/apps.Rd | 2 modest-0.3-1/modest/vignettes |only 17 files changed, 1761 insertions(+), 757 deletions(-)
Title: Interactive Tutorials for R
Description: Create interactive tutorials using R Markdown. Use a combination
of narrative, figures, videos, exercises, and quizzes to create self-paced
tutorials for learning about R and R packages.
Author: Barbara Borges [aut, cre],
JJ Allaire [aut],
RStudio, Inc. [cph],
Ajax.org B.V. [ctb, cph] (Ace library),
Zeno Rocha [ctb, cph] (clipboard.js library),
Nick Payne [ctb, cph] (Bootbox library),
Julie Cameron [ctb] (SlickQuiz library),
Quicken Loans [cph] (SlickQuiz library),
Mozilla [ctb, cph] (localforage library)
Maintainer: Barbara Borges <barbara@rstudio.com>
Diff between learnr versions 0.9 dated 2017-06-20 and 0.9.1 dated 2017-11-16
DESCRIPTION | 14 ++++++++------ MD5 | 5 +++-- NEWS.md |only R/tutorial-format.R | 7 ++++--- 4 files changed, 15 insertions(+), 11 deletions(-)
Title: Seamless Integration Between R and 'Julia'
Description: Provides an R interface to 'Julia',
which is a high-level, high-performance dynamic programming language
for numerical computing, see <https://julialang.org/> for more information.
It provides a high-level interface as well as a low-level interface.
Using the high level interface, you could call any 'Julia' function just like
any R function with automatic type conversion. Using the low level interface,
you could deal with C-level SEXP directly while enjoying the convenience of
using a high-level programming language like 'Julia'.
Author: Changcheng Li [aut, cre]
Maintainer: Changcheng Li <cxl508@psu.edu>
Diff between JuliaCall versions 0.9.3 dated 2017-10-12 and 0.11.1 dated 2017-11-16
JuliaCall-0.11.1/JuliaCall/DESCRIPTION | 10 JuliaCall-0.11.1/JuliaCall/MD5 | 80 ++++--- JuliaCall-0.11.1/JuliaCall/NAMESPACE | 33 ++- JuliaCall-0.11.1/JuliaCall/NEWS.md | 51 ++++ JuliaCall-0.11.1/JuliaCall/R/JuliaCall.R | 12 - JuliaCall-0.11.1/JuliaCall/R/JuliaObject.R | 88 +++++++- JuliaCall-0.11.1/JuliaCall/R/RMarkdown.R | 88 +++++--- JuliaCall-0.11.1/JuliaCall/R/deprecated.R | 12 - JuliaCall-0.11.1/JuliaCall/R/dispatch.R |only JuliaCall-0.11.1/JuliaCall/R/interface.R | 16 + JuliaCall-0.11.1/JuliaCall/R/zzz.R | 17 + JuliaCall-0.11.1/JuliaCall/README.md | 14 - JuliaCall-0.11.1/JuliaCall/build/vignette.rds |binary JuliaCall-0.11.1/JuliaCall/inst/doc/JuliaCall_in_Jupyter_R_Notebook.html | 4 JuliaCall-0.11.1/JuliaCall/inst/doc/Julia_in_RMarkdown.R |only JuliaCall-0.11.1/JuliaCall/inst/doc/Julia_in_RMarkdown.Rmd |only JuliaCall-0.11.1/JuliaCall/inst/doc/Julia_in_RMarkdown.html |only JuliaCall-0.11.1/JuliaCall/inst/julia/JuliaArray.jl |only JuliaCall-0.11.1/JuliaCall/inst/julia/JuliaObject.jl | 108 +++++++--- JuliaCall-0.11.1/JuliaCall/inst/julia/RCallprepare.jl | 11 - JuliaCall-0.11.1/JuliaCall/inst/julia/asR.jl |only JuliaCall-0.11.1/JuliaCall/inst/julia/convert.jl | 16 + JuliaCall-0.11.1/JuliaCall/inst/julia/dispatch.jl |only JuliaCall-0.11.1/JuliaCall/inst/julia/display/RmdJulia.jl | 37 ++- JuliaCall-0.11.1/JuliaCall/inst/julia/display/RmdJulia1.jl |only JuliaCall-0.11.1/JuliaCall/inst/julia/setup.jl | 25 +- JuliaCall-0.11.1/JuliaCall/inst/julia/suppress.jl |only JuliaCall-0.11.1/JuliaCall/man/JuliaCall.Rd | 12 - JuliaCall-0.11.1/JuliaCall/man/JuliaObject.Rd | 4 JuliaCall-0.11.1/JuliaCall/man/JuliaObjectFields.Rd |only JuliaCall-0.11.1/JuliaCall/man/call.Rd | 4 JuliaCall-0.11.1/JuliaCall/tests/testthat.R | 9 JuliaCall-0.11.1/JuliaCall/tests/testthat/Rmd_test.Rmd | 30 -- JuliaCall-0.11.1/JuliaCall/tests/testthat/Rmd_test.html | 30 -- JuliaCall-0.11.1/JuliaCall/tests/testthat/test_AD.R |only JuliaCall-0.11.1/JuliaCall/tests/testthat/test_JuliaObject.R |only JuliaCall-0.11.1/JuliaCall/tests/testthat/test_JuliaTuple.R |only JuliaCall-0.11.1/JuliaCall/tests/testthat/test_RCall.R |only JuliaCall-0.11.1/JuliaCall/tests/testthat/test_asR.R |only JuliaCall-0.11.1/JuliaCall/tests/testthat/test_basic.R | 3 JuliaCall-0.11.1/JuliaCall/tests/testthat/test_dispatch.R |only JuliaCall-0.11.1/JuliaCall/tests/testthat/test_error.R | 1 JuliaCall-0.11.1/JuliaCall/tests/testthat/test_rmd.R | 4 JuliaCall-0.11.1/JuliaCall/vignettes/JuliaCall_in_RMarkdown.md |only JuliaCall-0.11.1/JuliaCall/vignettes/JuliaCall_in_RMarkdown_files |only JuliaCall-0.11.1/JuliaCall/vignettes/Julia_in_RMarkdown.Rmd |only JuliaCall-0.11.1/JuliaCall/vignettes/mandelbrot.png |only JuliaCall-0.9.3/JuliaCall/inst/doc/Gallery.Rmd |only JuliaCall-0.9.3/JuliaCall/inst/doc/Gallery.html |only JuliaCall-0.9.3/JuliaCall/man/julia_eval_string.Rd |only JuliaCall-0.9.3/JuliaCall/man/print.JuliaObject.Rd |only JuliaCall-0.9.3/JuliaCall/vignettes/Gallery.Rmd |only JuliaCall-0.9.3/JuliaCall/vignettes/RCall.png |only JuliaCall-0.9.3/JuliaCall/vignettes/parallel.png |only 54 files changed, 485 insertions(+), 234 deletions(-)
Title: Rmetrics - Pricing and Evaluating Basic Options
Description: Provides a collection of functions to
valuate basic options. This includes the generalized
Black-Scholes option, options on futures and options on
commodity futures.
Author: Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between fOptions versions 3022.85 dated 2015-11-09 and 3042.86 dated 2017-11-16
ChangeLog | 1 DESCRIPTION | 23 - MD5 | 14 NAMESPACE | 7 R/zzz.R | 96 ++--- inst/unitTests/runit.MonteCarloOptions.R | 251 ++++++------- man/00fOptions-package.Rd | 354 +++++++++--------- man/MonteCarloOptions.Rd | 586 +++++++++++++++---------------- 8 files changed, 664 insertions(+), 668 deletions(-)
Title: Rmetrics - Nonlinear and Chaotic Time Series Modelling
Description: Provides a collection of functions for testing various aspects of
univariate time series including independence and neglected
nonlinearities. Further provides functions to investigate the chaotic
behavior of time series processes and to simulate different types of chaotic
time series maps.
Author: Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between fNonlinear versions 3010.78 dated 2013-06-23 and 3042.79 dated 2017-11-16
DESCRIPTION | 30 ++++++++-------- MD5 | 16 ++++---- NAMESPACE | 53 ++++++---------------------- R/NonLinModelling.R | 12 ------ R/NonLinStatistics.R | 12 ------ R/NonLinTests.R | 12 ------ R/zzz.R | 89 +++++++++++++++++++----------------------------- inst/unitTests/Makefile | 2 - man/NonLinTests.Rd | 36 +++++++------------ 9 files changed, 88 insertions(+), 174 deletions(-)
Title: Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Description: Provides a collection of functions to
analyze and model heteroskedastic behavior in financial time
series models.
Author: Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb],
Chris Boudt [ctb],
Pierre Chausse [ctb],
Michal Miklovac [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between fGarch versions 3010.82.1 dated 2016-08-15 and 3042.83 dated 2017-11-16
fGarch-3010.82.1/fGarch/data/dem2gbp.csv.gz |only fGarch-3010.82.1/fGarch/data/sp500dge.csv.gz |only fGarch-3010.82.1/fGarch/inst/COPYRIGHT.html |only fGarch-3042.83/fGarch/DESCRIPTION | 35 - fGarch-3042.83/fGarch/MD5 | 67 +- fGarch-3042.83/fGarch/NAMESPACE | 2 fGarch-3042.83/fGarch/R/class-fGARCH.R | 12 fGarch-3042.83/fGarch/R/class-fGARCHSPEC.R | 12 fGarch-3042.83/fGarch/R/dist-absMoments.R | 12 fGarch-3042.83/fGarch/R/dist-sstd.R | 12 fGarch-3042.83/fGarch/R/dist-sstdSlider.R | 12 fGarch-3042.83/fGarch/R/fGarch-package.R | 12 fGarch-3042.83/fGarch/R/garch-FitFromFormula.R | 384 ++++++------ fGarch-3042.83/fGarch/R/garch-Gradient.R | 12 fGarch-3042.83/fGarch/R/garch-Hessian.R | 8 fGarch-3042.83/fGarch/R/garch-Sim.R | 12 fGarch-3042.83/fGarch/R/garch-Solver.R | 12 fGarch-3042.83/fGarch/R/garch-SolverControl.R | 12 fGarch-3042.83/fGarch/R/garch-Spec.R | 12 fGarch-3042.83/fGarch/R/garch-Stats.R | 12 fGarch-3042.83/fGarch/R/methods-coef.R | 12 fGarch-3042.83/fGarch/R/methods-fitted.R | 114 +-- fGarch-3042.83/fGarch/R/methods-formula.R | 12 fGarch-3042.83/fGarch/R/methods-plot.R | 12 fGarch-3042.83/fGarch/R/methods-predict.R | 12 fGarch-3042.83/fGarch/R/methods-residuals.R | 12 fGarch-3042.83/fGarch/R/methods-show.R | 12 fGarch-3042.83/fGarch/R/methods-summary.R | 12 fGarch-3042.83/fGarch/R/methods-update.R | 17 fGarch-3042.83/fGarch/R/methods-volatility.R | 12 fGarch-3042.83/fGarch/R/mgarch-FitFromFormula.R | 10 fGarch-3042.83/fGarch/R/zzz.R | 72 +- fGarch-3042.83/fGarch/data/dem2gbp.csv |only fGarch-3042.83/fGarch/data/sp500dge.csv |only fGarch-3042.83/fGarch/man/00fGarch-package.Rd | 229 +++---- fGarch-3042.83/fGarch/man/garchFit.Rd | 726 ++++++++++++------------ fGarch-3042.83/fGarch/man/methods-predict.Rd | 280 ++++----- 37 files changed, 968 insertions(+), 1216 deletions(-)
Title: Rmetrics - Analysing and Modelling Financial Assets
Description: Provides a collection of functions
to manage, to investigate and to analyze data sets of financial
assets from different points of view.
Author: Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between fAssets versions 3011.83 dated 2014-10-30 and 3042.84 dated 2017-11-16
ChangeLog | 2 DESCRIPTION | 24 - MD5 | 14 NAMESPACE | 9 R/builtin-covRobust.R | 824 ++++++++++++++++++++++----------------------- R/builtin-donostahRobust.R | 548 ++++++++++++++--------------- R/plot-boxplot.R | 308 ++++++++-------- R/zzz.R | 80 ++-- 8 files changed, 907 insertions(+), 902 deletions(-)
Title: Easy Polynomial Regression
Description: Performs analysis of polynomial regression in simple designs with quantitative treatments.
Author: Emmanuel Arnhold
Maintainer: Emmanuel Arnhold <emmanuelarnhold@yahoo.com.br>
Diff between epr versions 2.0 dated 2013-07-30 and 3.0 dated 2017-11-16
DESCRIPTION | 15 - MD5 | 22 + NAMESPACE | 16 + R/bl.R |only R/pr1.R | 266 ++++++++++++++++------ R/pr2.R | 622 ++++++++++++++++++++++++++++++----------------------- R/r.test.R |only R/regplot.R | 140 +---------- man/bl.Rd |only man/epr-package.Rd | 29 -- man/pr1.Rd | 52 +++- man/pr2.Rd | 6 man/r.test.Rd |only man/regplot.Rd | 85 +------ 14 files changed, 678 insertions(+), 575 deletions(-)
Title: Analysis of Variance and Other Important Complementary Analyses
Description: Perform analysis of variance and other important complementary
analyses. The functions are easy to use. Performs analysis in various
designs, with balanced and unbalanced data.
Author: Emmanuel Arnhold
Maintainer: Emmanuel Arnhold <emmanuelarnhold@yahoo.com.br>
Diff between easyanova versions 4.0 dated 2014-09-08 and 5.0 dated 2017-11-16
DESCRIPTION | 14 +- MD5 | 14 +- NAMESPACE | 13 ++ R/ea1.R | 250 ++++++++++++++++++++++++----------------------- R/ea2.R | 123 ++++++++++++----------- man/ea1.Rd | 32 +++--- man/ea2.Rd | 48 ++++----- man/easyanova-package.Rd | 6 - 8 files changed, 262 insertions(+), 238 deletions(-)
Title: Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Description: Some helpful extensions and modifications to the 'ggplot2'
package. In particular, this package makes it easy to combine multiple
'ggplot2' plots into one and label them with letters, e.g. A, B, C, etc.,
as is often required for scientific publications. The package also provides
a streamlined and clean theme that is used in the Wilke lab, hence the
package name, which stands for Claus O. Wilke's plot package.
Author: Claus O. Wilke [aut, cre],
RStudio [cph] (Copyright for ggplot2 code copied to cowplot)
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between cowplot versions 0.9.0 dated 2017-11-16 and 0.9.1 dated 2017-11-16
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS | 4 ++++ R/draw.R | 27 +++++++++++++++------------ R/plot_grid.R | 12 +++++++----- inst/doc/axis_position.html | 4 ++-- inst/doc/introduction.R | 12 ------------ inst/doc/introduction.Rmd | 16 ---------------- inst/doc/introduction.html | 22 ++++++---------------- inst/doc/plot_annotations.html | 4 ++-- inst/doc/plot_grid.html | 4 ++-- inst/doc/shared_legends.html | 12 ++++++------ man/draw_image.Rd | 27 +++++++++++++++------------ man/plot_grid.Rd | 12 +++++++----- vignettes/introduction.Rmd | 16 ---------------- 15 files changed, 83 insertions(+), 123 deletions(-)
Title: Variable Selection for Heterogeneous Populations
Description: Provides variable selection and estimation routines for models
with main effects stratified on multiple binary factors. The 'vennLasso' package
is an implementation of the method introduced in Huling, et al. (2017) <doi:10.1111/biom.12769>.
Author: Jared Huling [aut, cre],
Muxuan Liang [ctb],
Yixuan Qiu [cph],
Gael Guennebaud [cph],
Ray Gardner [cph],
Jitse Niesen [cph]
Maintainer: Jared Huling <jaredhuling@gmail.com>
Diff between vennLasso versions 0.1 dated 2017-07-15 and 0.1.1 dated 2017-11-16
DESCRIPTION | 20 MD5 | 76 - NAMESPACE | 105 - R/cv_vennLasso.R | 1150 ++++++++--------- R/log_lik.R | 132 +- R/oglasso.R | 896 ++++++------- R/plot_cv_vennLasso.R | 132 +- R/plot_vennLasso.R | 194 +-- R/predict_vennLasso.R | 624 ++++----- R/simulate_hierarchically_sparse_data.R | 1285 +++++++++---------- R/treePlot.R | 928 +++++++++----- R/utils.R | 400 +++--- R/vennLasso.R | 1809 ++++++++++++++-------------- R/vennPlot.R | 408 +++--- README.md | 403 +++--- build/vignette.rds |binary inst/doc/using_the_vennLasso_package.R | 138 +- inst/doc/using_the_vennLasso_package.Rmd | 712 +++++------ inst/doc/using_the_vennLasso_package.pdf |binary man/cv.vennLasso.Rd | 222 +-- man/estimate.hier.sparsity.param.Rd | 112 - man/genHierSparseBeta.Rd | 90 - man/genHierSparseData.Rd | 227 +-- man/logLik.Rd | 92 - man/oglasso.Rd | 240 +-- man/plot.Rd | 182 +- man/plotCoefs.Rd |only man/plotSelections.Rd | 62 man/plotVenn.Rd | 108 - man/predict.Rd | 78 - man/predict.cv.vennLasso.Rd | 70 - man/vennLasso.Rd | 332 ++--- src/ADMMogLassoLogisticTall.h | 24 src/ADMMogLassoLogisticWide.h | 24 src/ADMMogLassoTall.h | 28 src/ADMMogLassoWide.h | 24 src/ogLasso.cpp | 18 vignettes/readme_figs/unnamed-chunk-6-1.png |binary vignettes/readme_figs/unnamed-chunk-7-1.png |only vignettes/using_the_vennLasso_package.Rmd | 712 +++++------ 40 files changed, 6211 insertions(+), 5846 deletions(-)
Title: Omnibus Test for Genetic Association Analysis using the Rank
Normal Transformation
Description: Implementation of genetic association tests that utilize the rank based inverse normal transformation (INT). The primary contribution is an omnibus test, which synthesizes two INT-based approaches, termed direct INT (DINT) and partially indirect INT (PIINT). In genome scale simulations, the omnibus test routinely provided valid inference against continuous phenotypes with skewed and heavy tailed residual distributions. Association testing against these same phenotypes via standard linear regression led to an excess of false positive associations. In addition to controlling the type I error, the omnibus approach provided power comparable to the more powerful of the component methods.
Author: Zachary McCaw [aut, cre]
Maintainer: Zachary McCaw <zmccaw@g.harvard.edu>
Diff between RNOmni versions 0.1.3 dated 2017-11-02 and 0.1.4 dated 2017-11-16
DESCRIPTION | 8 ++--- MD5 | 68 ++++++++++++++++++++++++++++++++++++++++++------- R/RankNormal.R | 42 ++++++++++++++++++------------ inst/doc/RNOmni.R | 6 +++- inst/doc/RNOmni.Rmd | 18 ++++++++---- inst/doc/RNOmni.html | 59 ++++++++++++++++++++++++++---------------- man/AvgCorr.Rd | 5 ++- man/RNOmni.Rd | 28 ++++++++++++-------- man/Y.Rd | 10 +++---- vignettes/Figs |only vignettes/RNOmni.Rmd | 18 ++++++++---- vignettes/RNOmni_cache |only vignettes/RNOmni_files |only 13 files changed, 180 insertions(+), 82 deletions(-)
Title: Time Dependent Point Process Modelling
Description: Fits and analyses time dependent marked point process models with an emphasis on earthquake modelling. For a more detailed introduction to the package, see the topic "PtProcess". A list of recent changes can be found in the topic "Change Log".
Author: David Harte
Maintainer: David Harte <d.s.harte@gmail.com>
Diff between PtProcess versions 3.3-12 dated 2016-09-21 and 3.3-13 dated 2017-11-16
DESCRIPTION | 10 ++++----- MD5 | 21 ++++++++++---------- R/simulate.mpp.R | 51 ++++++++++++++++++++++++++----------------------- build |only data/NthChina.rda |binary data/Ogata.rda |binary data/Phuket.rda |binary data/Tangshan.rda |binary inst/doc/index.html | 7 +++++- man/Changes.Rd | 13 ++++++++++-- man/PtProcess.Rd | 43 ++++++++++++++++++++++------------------- man/simple_gif.Rd | 54 ++++++++++++++++++++++++++++++++++++++++++++++++++++ 12 files changed, 138 insertions(+), 61 deletions(-)
Title: Psychometric Meta-Analysis Toolkit
Description: Tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Includes tools for converting effect sizes, computing sporadic artifact corrections, reshaping meta-analytic databases, computing multivariate corrections for range variation, and more.
Author: Jeffrey A. Dahlke [aut, cre],
Brenton M. Wiernik [aut],
Michael T. Brannick [ctb],
Jack Kostal [ctb],
Sean Potter [ctb],
Yuejia (Mandy) Teng [ctb]
Maintainer: Jeffrey A. Dahlke <dahlk068@umn.edu>
Diff between psychmeta versions 0.1.1 dated 2017-10-03 and 0.1.2 dated 2017-11-16
DESCRIPTION | 10 +- MD5 | 68 ++++++++--------- NAMESPACE | 3 R/convert_es.R | 4 - R/correct_d.R | 6 + R/correct_r.R | 175 ++++++++++++++++++++++++++++++++++++++++++-- R/create_ad.R | 2 R/data_wrangling.R | 43 ++++++++-- R/filters.R | 34 ++++++++ R/heterogeneity.R | 101 ++++++++++++++++++++++++- R/impute_artifacts.R | 31 ++++--- R/ma_d_bb.R | 4 - R/ma_d_order2.R | 4 - R/ma_generic.R | 6 - R/ma_r.R | 69 +++++++++++------ R/ma_r_ad.R | 3 R/ma_r_bb.R | 3 R/ma_r_ic.R | 3 R/ma_r_order2.R | 3 R/ma_wrappers.R | 31 ++++++- R/print_methods.R | 2 R/reshape.R | 4 - R/sensitivity.R | 16 +++- R/sensitivity_bootstrap.R | 18 ++-- R/sensitivity_cumulative.R | 30 ++++--- R/sensitivity_leave1out.R | 22 ++--- R/simulate_d.R | 19 ++-- R/simulate_r.R | 51 ++++++++---- R/zzz.R | 5 - README.md | 3 man/clean_warning.Rd |only man/correct_r_coarseness.Rd |only man/heterogeneity.Rd | 8 +- man/ma_r_generic.Rd | 2 man/simulate_d_database.Rd | 6 + man/simulate_d_sample.Rd | 2 36 files changed, 608 insertions(+), 183 deletions(-)
Title: Simultaneous Confidence Intervals for Ranks
Description: Algorithms to construct confidence intervals for the ranks of centers mu_1,...,mu_n based on an independent Gaussian sample using multiple testing techniques.
Author: Diaa Al Mohamad and Erik W. van Zwet and Jelle J. Goeman
Maintainer: Diaa Al Mohamad <diaa.almohamad@gmail.com>
Diff between ICRanks versions 1.1 dated 2017-11-03 and 1.2 dated 2017-11-16
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/ic.ranks.R | 5 +++-- src/PartitionByBlock.cpp | 7 ++++--- 4 files changed, 14 insertions(+), 12 deletions(-)
Title: Rmetrics - Portfolio Selection and Optimization
Description: Provides a collection
of functions to optimize portfolios and to analyze them from
different points of view.
Author: Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb],
William Chen [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between fPortfolio versions 3011.81 dated 2014-10-30 and 3042.83 dated 2017-11-16
ChangeLog | 7 DESCRIPTION | 33 - MD5 | 30 - NAMESPACE | 128 ++++ R/mathprogLP-symphony.R | 5 R/mathprogNLP.R | 4 R/methods-show.R | 5 R/monitor-stability.R | 33 - R/object-portfolioSpec.R | 34 - R/object-setSpec.R | 71 +- R/portfolio-riskPfolio.R | 527 +++++++++--------- R/risk-tailBudgets.R | 1169 ++++++++++++++++++++--------------------- R/zzz.R | 138 ++-- man/00fPortfolio-package.Rd | 92 +-- man/portfolio-portfolioSpec.Rd | 750 +++++++++++++------------- man/portfolio-riskPfolio.Rd | 3 16 files changed, 1614 insertions(+), 1415 deletions(-)
Title: Rmetrics - Analysing and Modeling Multivariate Financial Return
Distributions
Description: Provides a collection of functions
to manage, to investigate and to analyze bivariate and multivariate
data sets of financial returns.
Author: Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between fMultivar versions 3011.78 dated 2014-09-06 and 3042.80 dated 2017-11-16
DESCRIPTION | 29 +-- MD5 | 12 - NAMESPACE | 10 + R/zzz.R | 80 ++++----- inst/unitTests/Makefile | 2 inst/unitTests/runit.BivariateGridding.R | 187 +++++++++++----------- man/utils-adapt.Rd | 258 +++++++++++++++---------------- 7 files changed, 294 insertions(+), 284 deletions(-)
Title: Rmetrics - Importing Economic and Financial Data
Description: Provides a collection of utility functions
to download and manage data sets from the Internet or from other
sources.
Author: Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between fImport versions 3000.82 dated 2013-03-15 and 3042.84 dated 2017-11-16
fImport-3000.82/fImport/R/builtin-xlsGdata.R |only fImport-3000.82/fImport/R/import-oanda.R |only fImport-3000.82/fImport/R/import-yahoo.R |only fImport-3000.82/fImport/R/read-download.R |only fImport-3000.82/fImport/R/read-split.R |only fImport-3000.82/fImport/R/read-xls.R |only fImport-3000.82/fImport/R/utils-yahoo.R |only fImport-3000.82/fImport/data/amexListing.csv.gz |only fImport-3000.82/fImport/data/h15Listing.csv.gz |only fImport-3000.82/fImport/data/nasdaqListing.csv.gz |only fImport-3000.82/fImport/data/nyseListing.csv.gz |only fImport-3000.82/fImport/data/oandaListing.csv.gz |only fImport-3000.82/fImport/data/stoxxListing.csv.gz |only fImport-3000.82/fImport/data/swxListing.csv.gz |only fImport-3000.82/fImport/inst/COPYRIGHT.html |only fImport-3000.82/fImport/inst/THANKS |only fImport-3000.82/fImport/inst/perl |only fImport-3000.82/fImport/man/import-oanda.Rd |only fImport-3000.82/fImport/man/import-yahoo.Rd |only fImport-3000.82/fImport/man/read-download.Rd |only fImport-3000.82/fImport/man/read-split.Rd |only fImport-3000.82/fImport/man/read-xls.Rd |only fImport-3000.82/fImport/man/utils-yahooBriefing.Rd |only fImport-3000.82/fImport/man/utils-yahooKeystats.Rd |only fImport-3042.84/fImport/ChangeLog | 4 fImport-3042.84/fImport/DESCRIPTION | 30 - fImport-3042.84/fImport/MD5 | 106 ++---- fImport-3042.84/fImport/NAMESPACE | 59 --- fImport-3042.84/fImport/NEWS |only fImport-3042.84/fImport/R/class-fWEBDATA.R | 4 fImport-3042.84/fImport/R/import-fred.R | 339 ++++++++++----------- fImport-3042.84/fImport/R/methods-show.R | 4 fImport-3042.84/fImport/R/read-lines.R | 71 ++-- fImport-3042.84/fImport/R/read-links.R | 114 +++---- fImport-3042.84/fImport/R/read-lynx.R | 8 fImport-3042.84/fImport/R/read-w3m.R | 10 fImport-3042.84/fImport/R/utils-download.R |only fImport-3042.84/fImport/R/utils-split.R |only fImport-3042.84/fImport/R/zzz.R | 71 ++-- fImport-3042.84/fImport/data/amexListing.csv |only fImport-3042.84/fImport/data/h15Listing.csv |only fImport-3042.84/fImport/data/nasdaqListing.csv |only fImport-3042.84/fImport/data/nyseListing.csv |only fImport-3042.84/fImport/data/oandaListing.csv |only fImport-3042.84/fImport/data/stoxxListing.csv |only fImport-3042.84/fImport/data/swxListing.csv |only fImport-3042.84/fImport/inst/obsolete |only fImport-3042.84/fImport/man/00fImport-package.Rd | 264 +++++++--------- fImport-3042.84/fImport/man/class-fWEBDATA.Rd | 15 fImport-3042.84/fImport/man/import-fred.Rd | 302 +++++++++--------- fImport-3042.84/fImport/man/provider-listings.Rd | 22 + fImport-3042.84/fImport/man/read-links.Rd | 24 + fImport-3042.84/fImport/man/read-lynx.Rd | 23 + fImport-3042.84/fImport/man/read-w3m.Rd | 23 + fImport-3042.84/fImport/man/utils-download.Rd |only fImport-3042.84/fImport/man/utils-split.Rd |only 56 files changed, 762 insertions(+), 731 deletions(-)
Title: Rmetrics - Bivariate Dependence Structures with Copulae
Description: Provides a collection of functions to
manage, to investigate and to analyze bivariate financial returns by
Copulae. Included are the families of Archemedean, Elliptical,
Extreme Value, and Empirical Copulae.
Author: Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between fCopulae versions 3011.81 dated 2014-09-17 and 3042.82 dated 2017-11-16
DESCRIPTION | 25 ++++++------ MD5 | 8 ++-- NAMESPACE | 5 ++ R/zzz.R | 96 ++++++++++++++++++++++++------------------------ inst/unitTests/Makefile | 2 - 5 files changed, 70 insertions(+), 66 deletions(-)
Title: Stacks, Queues, and 'Deques' for R
Description: Queues, stacks, and 'deques' are list-like, abstract data types.
These are meant to be very cheap to "grow", or insert new objects into.
A typical use case involves storing data in a list in a streaming fashion,
when you do not necessarily know how may elements need to be stored.
Unlike R's lists, the new data structures provided here are not
necessarily stored contiguously, making insertions and deletions at the
front/end of the structure much faster. The underlying implementation
is new and uses a head/tail doubly linked list; thus, we do not rely on R's
environments or hashing. To avoid unnecessary data copying, most operations
on these data structures are performed via side-effects.
Author: Drew Schmidt [aut, cre]
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between dequer versions 2.0-0 dated 2016-09-26 and 2.0-1 dated 2017-11-16
dequer-2.0-0/dequer/tests/dontrun |only dequer-2.0-1/dequer/ChangeLog | 5 +++++ dequer-2.0-1/dequer/DESCRIPTION | 6 +++--- dequer-2.0-1/dequer/LICENSE | 2 +- dequer-2.0-1/dequer/MD5 | 22 +++++++++++----------- dequer-2.0-1/dequer/R/popping.r | 8 ++++---- dequer-2.0-1/dequer/README.md | 7 ++++++- dequer-2.0-1/dequer/src/constructor.c | 10 +++------- dequer-2.0-1/dequer/src/converters.c | 2 +- dequer-2.0-1/dequer/src/deque.c | 30 +++++++++++++++++++----------- dequer-2.0-1/dequer/src/deque.h | 6 +++--- dequer-2.0-1/dequer/src/dequer_native.c |only dequer-2.0-1/dequer/src/utils.c | 29 ++++++++++++++++++++++++----- 13 files changed, 80 insertions(+), 47 deletions(-)
Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006,
2014). Includes a function for conveniently defining differential equation
models, model solution based on eigenvalues if possible or using numerical
solvers and a choice of the optimisation methods made available by the 'FME'
package. If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using compiled C functions. Please note that no
warranty is implied for correctness of results or fitness for a particular
purpose.
Author: Johannes Ranke [aut, cre, cph] (0000-0003-4371-6538),
Katrin Lindenberger [ctb],
René Lehmann [ctb],
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between mkin versions 0.9.46.2 dated 2017-10-10 and 0.9.46.3 dated 2017-11-16
DESCRIPTION | 12 +-- MD5 | 59 ++++++++++---- NEWS.md | 8 +- R/add_err.R | 6 - README.md | 56 +++++++------- inst/doc/FOCUS_D.R | 20 ----- inst/doc/FOCUS_D.Rmd | 4 - inst/doc/FOCUS_D.html | 168 ++++++++++++------------------------------ inst/doc/FOCUS_L.html | 60 +++++++-------- inst/doc/FOCUS_Z.Rmd | 2 inst/doc/FOCUS_Z.html | 6 - inst/doc/compiled_models.html | 16 ++-- inst/doc/mkin.Rmd | 6 - inst/doc/mkin.html | 8 +- inst/doc/twa.html | 4 - man/add_err.Rd | 5 + man/synthetic_data_for_UBA.Rd | 82 +++++++++++++++++++- vignettes/FOCUS_D.Rmd | 4 - vignettes/FOCUS_D_cache |only vignettes/FOCUS_D_files |only vignettes/FOCUS_Z.Rmd | 2 vignettes/mkin.Rmd | 6 - 22 files changed, 275 insertions(+), 259 deletions(-)
Title: A Method to Search for Differentially Expressed Genes and to
Detect Recurrent Chromosomal Copy Number Aberrations
Description: A fold change rank based method is presented to search for genes with changing
expression and to detect recurrent chromosomal copy number aberrations. This
method may be useful for high-throughput biological data (micro-array, sequencing, ...).
Probabilities are associated with genes or probes in the data set and there is no
problem of multiple tests when using this method. For array-based comparative genomic
hybridization data, segmentation results are obtained by merging the significant
probes detected.
Author: Doulaye Dembele
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>
Diff between fcros versions 1.5.4 dated 2017-04-14 and 1.5.5 dated 2017-11-16
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++++--------- NAMESPACE | 5 +++-- R/fcros.R | 2 +- R/fcrosMod.R | 2 +- R/pfco.R | 19 +++++++++---------- R/pfcoMod.R | 19 +++++++++---------- R/rankReads.R |only R/tcnReads.R |only man/fcros-package.Rd | 10 ++++++++-- man/rankReads.Rd |only man/tcnReads.Rd |only src/fcros.c | 3 +-- src/fcros.h | 2 +- 14 files changed, 50 insertions(+), 42 deletions(-)
Title: Collecting Twitter Data
Description: An implementation of calls designed to collect and
organize Twitter data via Twitter's REST and stream Application
Program Interfaces (API), which can be found at the following URL:
<https://developer.twitter.com/en/docs>.
Author: Michael W. Kearney [aut, cre]
Maintainer: Michael W. Kearney <kearneymw@missouri.edu>
Diff between rtweet versions 0.4.0 dated 2017-01-18 and 0.6.0 dated 2017-11-16
rtweet-0.4.0/rtweet/R/TWIT.R |only rtweet-0.4.0/rtweet/R/parse.R |only rtweet-0.4.0/rtweet/R/parse.piper.R |only rtweet-0.4.0/rtweet/R/parse.tweets.R |only rtweet-0.4.0/rtweet/R/parse.users.R |only rtweet-0.4.0/rtweet/R/plot.R |only rtweet-0.4.0/rtweet/R/rate.limit.R |only rtweet-0.4.0/rtweet/R/rtplot.R |only rtweet-0.4.0/rtweet/R/save.csv.R |only rtweet-0.4.0/rtweet/R/scroll.R |only rtweet-0.4.0/rtweet/R/search.R |only rtweet-0.4.0/rtweet/R/text.R |only rtweet-0.4.0/rtweet/R/woeids.R |only rtweet-0.4.0/rtweet/man/find_woeid.Rd |only rtweet-0.4.0/rtweet/man/mutate_coords.Rd |only rtweet-0.4.0/rtweet/man/parse_data.Rd |only rtweet-0.4.0/rtweet/man/parser.Rd |only rtweet-0.4.0/rtweet/man/post_mute.Rd |only rtweet-0.4.0/rtweet/man/post_unfollow_user.Rd |only rtweet-0.4.0/rtweet/man/rtweet.Rd |only rtweet-0.4.0/rtweet/man/ts_filter.Rd |only rtweet-0.6.0/rtweet/DESCRIPTION | 30 rtweet-0.6.0/rtweet/MD5 | 218 ++- rtweet-0.6.0/rtweet/NAMESPACE | 74 - rtweet-0.6.0/rtweet/NEWS.md | 89 + rtweet-0.6.0/rtweet/R/as_screenname.R |only rtweet-0.6.0/rtweet/R/collections.R |only rtweet-0.6.0/rtweet/R/coords.R |only rtweet-0.6.0/rtweet/R/data.R |only rtweet-0.6.0/rtweet/R/direct_messages.R |only rtweet-0.6.0/rtweet/R/do_call_rbind.R |only rtweet-0.6.0/rtweet/R/extractors.R | 157 -- rtweet-0.6.0/rtweet/R/favorites.R | 235 ++- rtweet-0.6.0/rtweet/R/followers.R | 284 +++- rtweet-0.6.0/rtweet/R/friends.R | 466 +++++-- rtweet-0.6.0/rtweet/R/lat_lng.R |only rtweet-0.6.0/rtweet/R/lists_members.R |only rtweet-0.6.0/rtweet/R/lists_memberships.R |only rtweet-0.6.0/rtweet/R/lists_parsing.R |only rtweet-0.6.0/rtweet/R/lists_statuses.R |only rtweet-0.6.0/rtweet/R/lists_subscribers.R |only rtweet-0.6.0/rtweet/R/lists_users.R |only rtweet-0.6.0/rtweet/R/mentions.R |only rtweet-0.6.0/rtweet/R/next_cursor.R |only rtweet-0.6.0/rtweet/R/plain_tweets.R |only rtweet-0.6.0/rtweet/R/post.R | 381 +++--- rtweet-0.6.0/rtweet/R/rate_limit.R |only rtweet-0.6.0/rtweet/R/renv.R |only rtweet-0.6.0/rtweet/R/retweets.R |only rtweet-0.6.0/rtweet/R/rtweet-package.R | 19 rtweet-0.6.0/rtweet/R/save_as_csv.R |only rtweet-0.6.0/rtweet/R/search_tweets.R |only rtweet-0.6.0/rtweet/R/search_users.R |only rtweet-0.6.0/rtweet/R/statuses.R | 168 +- rtweet-0.6.0/rtweet/R/stream.R | 655 ++++++---- rtweet-0.6.0/rtweet/R/suggested.R |only rtweet-0.6.0/rtweet/R/timeline.R | 231 ++- rtweet-0.6.0/rtweet/R/tokens.R | 597 ++++++--- rtweet-0.6.0/rtweet/R/trends.R | 303 +++- rtweet-0.6.0/rtweet/R/ts_plot.R |only rtweet-0.6.0/rtweet/R/tweets_and_users.R |only rtweet-0.6.0/rtweet/R/users.R | 152 +- rtweet-0.6.0/rtweet/R/utils.R | 691 ++++++----- rtweet-0.6.0/rtweet/README.md | 263 +++- rtweet-0.6.0/rtweet/build/vignette.rds |binary rtweet-0.6.0/rtweet/data |only rtweet-0.6.0/rtweet/inst/CITATION | 24 rtweet-0.6.0/rtweet/inst/assets |only rtweet-0.6.0/rtweet/inst/doc/auth.R | 6 rtweet-0.6.0/rtweet/inst/doc/auth.Rmd | 6 rtweet-0.6.0/rtweet/inst/doc/auth.html | 10 rtweet-0.6.0/rtweet/inst/doc/intro.R | 242 ++- rtweet-0.6.0/rtweet/inst/doc/intro.Rmd | 303 ++-- rtweet-0.6.0/rtweet/inst/doc/intro.html | 282 ++-- rtweet-0.6.0/rtweet/inst/doc/stream.R | 80 - rtweet-0.6.0/rtweet/inst/doc/stream.Rmd | 109 - rtweet-0.6.0/rtweet/inst/doc/stream.html | 95 - rtweet-0.6.0/rtweet/man/as_screenname.Rd |only rtweet-0.6.0/rtweet/man/create_token.Rd | 49 rtweet-0.6.0/rtweet/man/direct_messages.Rd |only rtweet-0.6.0/rtweet/man/do_call_rbind.Rd |only rtweet-0.6.0/rtweet/man/emojis.Rd |only rtweet-0.6.0/rtweet/man/figures |only rtweet-0.6.0/rtweet/man/get_collections.Rd |only rtweet-0.6.0/rtweet/man/get_favorites.Rd | 92 - rtweet-0.6.0/rtweet/man/get_followers.Rd | 112 + rtweet-0.6.0/rtweet/man/get_friends.Rd | 101 + rtweet-0.6.0/rtweet/man/get_mentions.Rd |only rtweet-0.6.0/rtweet/man/get_retweeters.Rd |only rtweet-0.6.0/rtweet/man/get_retweets.Rd |only rtweet-0.6.0/rtweet/man/get_timeline.Rd | 95 - rtweet-0.6.0/rtweet/man/get_tokens.Rd | 38 rtweet-0.6.0/rtweet/man/get_trends.Rd | 78 - rtweet-0.6.0/rtweet/man/langs.Rd |only rtweet-0.6.0/rtweet/man/lat_lng.Rd |only rtweet-0.6.0/rtweet/man/lists_members.Rd |only rtweet-0.6.0/rtweet/man/lists_statuses.Rd |only rtweet-0.6.0/rtweet/man/lists_subscribers.Rd |only rtweet-0.6.0/rtweet/man/lists_users.Rd |only rtweet-0.6.0/rtweet/man/lookup_collections.Rd |only rtweet-0.6.0/rtweet/man/lookup_coords.Rd | 47 rtweet-0.6.0/rtweet/man/lookup_friendships.Rd | 19 rtweet-0.6.0/rtweet/man/lookup_statuses.Rd | 66 - 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145 files changed, 5200 insertions(+), 3467 deletions(-)
Title: R Interface to Python
Description: R interface to Python modules, classes, and functions. When calling
into Python R data types are automatically converted to their equivalent Python
types. When values are returned from Python to R they are converted back to R
types. Compatible with all versions of Python >= 2.7.
Author: JJ Allaire [aut, cre],
Kevin Ushey [ctb],
RStudio [cph, fnd],
Yuan Tang [aut, cph],
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between reticulate versions 1.2 dated 2017-09-27 and 1.3 dated 2017-11-16
DESCRIPTION | 6 - MD5 | 86 ++++++++++++------- NAMESPACE | 12 ++ NEWS.md | 50 +++++++++++ R/RcppExports.R | 8 + R/array.R | 78 ++++++++++-------- R/config.R | 78 ++++++++++++++++-- R/generator.R | 17 +++ R/knitr-engine.R |only R/output.R | 14 +-- R/package.R | 12 +- R/pickle.R |only R/python.R | 93 +++++++++++++++++++-- R/use_python.R | 3 R/utils.R | 18 ++++ R/zzz.R |only inst/doc/arrays.R | 23 +++++ inst/doc/arrays.Rmd | 46 ++++++++++ inst/doc/arrays.html | 27 ++++++ inst/doc/introduction.Rmd | 12 ++ inst/doc/introduction.html | 36 +++++++- inst/doc/versions.Rmd | 4 inst/doc/versions.html | 4 inst/python/rpytools/output.py | 14 ++- inst/python/rpytools/output.pyc |binary man/array_reshape.Rd |only man/eng_python.Rd |only man/np_array.Rd | 6 - man/py.Rd |only man/py_id.Rd |only man/py_iterator.Rd | 2 man/py_len.Rd |only man/py_save_object.Rd |only man/py_to_r_wrapper.Rd |only src/RcppExports.cpp | 24 +++++ src/libpython.cpp | 26 +++++- src/libpython.h | 1 src/output.cpp |only src/python.cpp | 130 +++++++++++++++++++----------- tests/testthat/resources |only tests/testthat/test-python-arrays.R |only tests/testthat/test-python-comparisons.R | 10 +- tests/testthat/test-python-engine.R |only tests/testthat/test-python-knitr-engine.R |only tests/testthat/test-python-lists.R | 13 +++ tests/testthat/test-python-numpy.R | 17 --- tests/testthat/test-python-pickle.R |only tests/testthat/test-python-strings.R |only tests/testthat/utils.R | 2 vignettes/arrays.Rmd | 46 ++++++++++ vignettes/introduction.Rmd | 12 ++ vignettes/versions.Rmd | 4 52 files changed, 740 insertions(+), 194 deletions(-)
Title: Statistical Modelling of Extreme Values
Description: Statistical extreme value modelling of threshold excesses,
maxima and multivariate extremes. Univariate models for threshold
excesses and maxima are the Generalised Pareto, and Generalised
Extreme Value model respectively. These models may be fitted by
using maximum (optionally penalised-)likelihood, or Bayesian
estimation, and both classes of models may be fitted with covariates
in any/all model parameters. Model diagnostics support the fitting
process. Graphical output for visualising fitted models and return
level estimates is provided. For serially dependent sequences, the
intervals declustering algorithm of Ferro and Segers
(2003) <doi:10.1111/1467-9868.00401> is provided,
with diagnostic support to aid selection of threshold and declustering
horizon. Multivariate modelling is performed via the conditional
approach of Heffernan and Tawn (2004) <doi:10.1111/j.1467-9868.2004.02050.x>,
with graphical tools for threshold
selection and to diagnose estimation convergence.
Author: Harry Southworth [aut, cre],
Janet E. Heffernan [aut],
Paul D. Metcalfe [aut],
Yiannis Papastathopoulos [ctb],
Alec Stephenson [ctb],
Stuart Coles [ctb]
Maintainer: Harry Southworth <harry.southworth@gmail.com>
Diff between texmex versions 2.3 dated 2016-11-18 and 2.4 dated 2017-11-16
texmex-2.3/texmex/R/internal-roxygen.R |only texmex-2.3/texmex/R/inv_Laplace.R |only texmex-2.4/texmex/DESCRIPTION | 48 ++-- texmex-2.4/texmex/MD5 | 176 +++++++++--------- texmex-2.4/texmex/NAMESPACE | 7 texmex-2.4/texmex/R/AIC.evm.R | 61 +++++- texmex-2.4/texmex/R/bootmex.R | 14 - texmex-2.4/texmex/R/constructObject.R | 2 texmex-2.4/texmex/R/evm.R | 17 + texmex-2.4/texmex/R/evm.simSetSeed.R | 11 - texmex-2.4/texmex/R/evmBoot.R | 20 +- texmex-2.4/texmex/R/evmSim.R | 2 texmex-2.4/texmex/R/extremalIndex.R | 88 ++++----- texmex-2.4/texmex/R/ggplot.predict.R | 4 texmex-2.4/texmex/R/ggplot.thresh.R | 2 texmex-2.4/texmex/R/gumbel.R |only texmex-2.4/texmex/R/jointExceedanceCurves.R | 73 +++---- texmex-2.4/texmex/R/mexMonteCarlo.R | 10 - texmex-2.4/texmex/R/mexRangeFit.R | 11 - texmex-2.4/texmex/R/migpd.R | 26 +- texmex-2.4/texmex/R/mrl.R | 8 texmex-2.4/texmex/R/mspearman.R | 10 - texmex-2.4/texmex/R/predict.evm.R | 21 +- texmex-2.4/texmex/R/print.evm.R | 8 texmex-2.4/texmex/R/special.functions.R | 2 texmex-2.4/texmex/R/summary.evm.R | 7 texmex-2.4/texmex/R/texmex-package.R | 158 ++++++++-------- texmex-2.4/texmex/R/texmexFamily.R | 6 texmex-2.4/texmex/R/texmexWorkers.R | 5 texmex-2.4/texmex/R/weibull.R |only texmex-2.4/texmex/R/weibull.info.R |only texmex-2.4/texmex/README.md | 6 texmex-2.4/texmex/inst/doc/declustering.pdf |binary texmex-2.4/texmex/inst/doc/egp3.pdf |binary texmex-2.4/texmex/inst/doc/test_texmex.pdf |binary texmex-2.4/texmex/inst/doc/texmex1d.pdf |binary texmex-2.4/texmex/inst/doc/texmexMultivariate.pdf |binary texmex-2.4/texmex/man/AIC.evmOpt.Rd | 24 +- texmex-2.4/texmex/man/JointExceedanceCurve.Rd | 5 texmex-2.4/texmex/man/MCS.Rd | 20 +- texmex-2.4/texmex/man/addExcesses.Rd | 1 texmex-2.4/texmex/man/airPollution.Rd | 3 texmex-2.4/texmex/man/bootmex.Rd | 9 texmex-2.4/texmex/man/chi.Rd | 11 - texmex-2.4/texmex/man/copula.Rd | 7 texmex-2.4/texmex/man/degp3.Rd | 7 texmex-2.4/texmex/man/dgev.Rd | 1 texmex-2.4/texmex/man/dgpd.Rd | 1 texmex-2.4/texmex/man/edf.Rd | 7 texmex-2.4/texmex/man/egp3RangeFit.Rd | 11 - texmex-2.4/texmex/man/endPoint.Rd | 3 texmex-2.4/texmex/man/evm.Rd | 11 - texmex-2.4/texmex/man/evmBoot.Rd | 18 - texmex-2.4/texmex/man/evmSim.Rd | 1 texmex-2.4/texmex/man/evmSimSetSeed.Rd | 7 texmex-2.4/texmex/man/extremalIndex.Rd | 25 +- texmex-2.4/texmex/man/ggplot.declustered.Rd | 1 texmex-2.4/texmex/man/ggplot.evmBoot.Rd | 3 texmex-2.4/texmex/man/ggplot.evmOpt.Rd | 5 texmex-2.4/texmex/man/ggplot.evmSim.Rd | 5 texmex-2.4/texmex/man/ggplot.rl.evmOpt.Rd | 3 texmex-2.4/texmex/man/gpdRangeFit.Rd | 13 - texmex-2.4/texmex/man/liver.Rd | 1 texmex-2.4/texmex/man/logLik.evmOpt.Rd | 1 texmex-2.4/texmex/man/mex.Rd | 26 +- texmex-2.4/texmex/man/mexDependence.Rd | 7 texmex-2.4/texmex/man/mexMonteCarlo.Rd | 7 texmex-2.4/texmex/man/mexRangeFit.Rd | 7 texmex-2.4/texmex/man/migpd.Rd | 11 - texmex-2.4/texmex/man/migpdCoefs.Rd | 7 texmex-2.4/texmex/man/mrl.Rd | 21 +- texmex-2.4/texmex/man/plot.evmOpt.Rd | 1 texmex-2.4/texmex/man/plot.evmSim.Rd | 1 texmex-2.4/texmex/man/predict.evmOpt.Rd | 11 - texmex-2.4/texmex/man/print.evmOpt.Rd |only texmex-2.4/texmex/man/rFrechet.Rd | 1 texmex-2.4/texmex/man/rMaxAR.Rd | 1 texmex-2.4/texmex/man/rain.Rd | 7 texmex-2.4/texmex/man/rl.Rd | 7 texmex-2.4/texmex/man/simulate.evmOpt.Rd | 9 texmex-2.4/texmex/man/texmex-package.Rd | 49 ++--- texmex-2.4/texmex/man/texmexFamily.Rd | 23 +- texmex-2.4/texmex/man/thinAndBurn.Rd | 7 texmex-2.4/texmex/src/texmex.c | 1 texmex-2.4/texmex/tests/testthat.R | 3 texmex-2.4/texmex/tests/testthat/test-dgpd.R | 2 texmex-2.4/texmex/tests/testthat/test-evm.R | 18 - texmex-2.4/texmex/tests/testthat/test-extremalIndex.R | 28 +- texmex-2.4/texmex/tests/testthat/test-gumbel.R |only texmex-2.4/texmex/tests/testthat/test-mexDependence.R | 4 texmex-2.4/texmex/tests/testthat/test-pgpd.R | 2 texmex-2.4/texmex/tests/testthat/test-qgpd.R | 2 texmex-2.4/texmex/tests/testthat/test-weibull.R |only 93 files changed, 672 insertions(+), 598 deletions(-)
Title: Test Analysis Modules
Description: Includes marginal maximum likelihood estimation and joint maximum
likelihood estimation for unidimensional and multidimensional
item response models. The package functionality covers the
Rasch model, 2PL model, 3PL model, generalized partial credit model,
multi-faceted Rasch model, nominal item response model,
structured latent class model, mixture distribution IRT models,
and located latent class models. Latent regression models and
plausible value imputation are also supported. For details see
Adams, Wilson and Wang, 1997 <doi:10.1177/0146621697211001>,
Adams, Wilson and Wu, 1997 <doi:10.3102/10769986022001047>,
Formann, 1982 <doi:10.1002/bimj.4710240209>,
Formann, 1992 <doi:10.1080/01621459.1992.10475229>.
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 2.7-56 dated 2017-10-19 and 2.8-21 dated 2017-11-16
DESCRIPTION | 16 MD5 | 915 +++++++++--------- R/DescribeBy.R | 1 R/EAPrel.R | 1 R/IRT.WrightMap.R | 1 R/IRT.data.tam.R | 1 R/IRT.drawPV.R | 1 R/IRT.expectedCounts.tam.R | 1 R/IRT.factor.scores.tam.R | 1 R/IRT.frequencies.tam.R | 1 R/IRT.informationCurve.R | 1 R/IRT.irfprob.tam.R | 1 R/IRT.itemfit.R | 1 R/IRT.likelihood.TAM.R | 1 R/IRT.linearCFA.R | 1 R/IRT.modelfit.tam.R | 1 R/IRT.residuals.R | 1 R/IRT.simulate.R | 1 R/IRT.threshold.R | 1 R/IRT.truescore.R | 1 R/IRTLikelihood.cfa.R | 1 R/IRTLikelihood.ctt.R | 1 R/RcppExports.R | 75 - R/Scale.R | 1 R/TAM_lavaanify.R | 1 R/WLErel.R | 1 R/WLErel_exclude_missings.R | 1 R/add.colnames.resp.R | 1 R/add.lead.R | 1 R/anova.tam.R | 1 R/cfa.extract.itempars.R | 1 R/change.grep.lavpartable.R | 1 R/designMatrices.R | 1 R/designMatrices.mfr.R | 1 R/designMatrices.mfr2.R | 1 R/designMatrices.mfr_aux.R | 1 R/designMatrices.mfr_aux2.R | 1 R/designMatrices_aux.R | 1 R/designMatrices_aux2.R | 1 R/doparse.R | 1 R/extend.label.group.R | 1 R/lavaanify.IRT.R | 1 R/lavaanify.grep.MEASERR.R | 1 R/lavaanify.grep.nonlinear.R | 1 R/lavpartable.grep.underbrace.R | 1 R/lavpartable2lavsyntax.R | 1 R/logLik.tam.jml.R | 1 R/logLik_tam.R | 1 R/msq.itemfit.R | 1 R/msq.itemfitWLE.R | 1 R/plot.IRT.informationCurves.R | 1 R/plot.ctt.R | 1 R/plot.tam.R | 1 R/plot.tam.pv.mcmc.R | 1 R/plotDevianceTAM.R | 1 R/predict.tam.R | 1 R/print.tam.R | 1 R/print.tam.linking.R | 1 R/print.tam.wle.R | 1 R/print.tam_linking_2studies.R | 1 R/prior_list_include.R | 1 R/remove.duplicated.variances.lavsyn.R | 1 R/require_namespace_msg.R | 1 R/split.syn.string.R | 1 R/summary.msq.itemfit.R | 5 R/summary.msq.itemfitWLE.R | 5 R/summary.tam.Q3.R | 1 R/summary.tam.R | 5 R/summary.tam.fit.R | 1 R/summary.tam.jml.R | 1 R/summary.tam.linking.R | 5 R/summary.tam.mml.3pl.R | 5 R/summary.tam.modelfit.R | 1 R/summary.tam.pv.mcmc.R | 5 R/summary.tam.wle.R | 1 R/summary.tam_linking_2studies.R | 5 R/summary.tamaan.R | 1 R/summary_tamaan_3pl_discrete_distribution.R | 1 R/summary_tamaan_3pl_distr_mixture.R | 1 R/summary_tamaan_3pl_intro.R | 5 R/summary_tamaan_3pl_lcaprobs.R | 1 R/summary_tamaan_3pl_loclca.R | 1 R/summary_tamaan_item_parameters.R | 1 R/summary_tamaan_item_parameters_mixture.R | 1 R/summary_tamaan_normal_skillspace.R | 1 R/tam.Q3.R | 1 R/tam.R | 1 R/tam.ctt.R | 1 R/tam.ctt2.R | 1 R/tam.ctt3.R | 1 R/tam.fa.R | 1 R/tam.fit.R | 1 R/tam.jml.R | 1 R/tam.jml.fit.R | 1 R/tam.jml2.R | 1 R/tam.latreg.R | 1 R/tam.linking.R | 1 R/tam.mml.2pl.R | 1 R/tam.mml.3pl.R | 45 R/tam.mml.R | 7 R/tam.mml.mfr.R | 1 R/tam.mml.wle.R | 1 R/tam.mml.wle2.R | 1 R/tam.modelfit.IRT.R | 1 R/tam.modelfit.R | 1 R/tam.modelfit.args.R | 1 R/tam.parameterfix.defaults.R | 1 R/tam.pv.R | 1 R/tam.pv.mcmc.R | 1 R/tam.q3.aux.R | 1 R/tam.se.R | 1 R/tam.wle.R | 1 R/tam_01_pattern.R | 1 R/tam_AXsi_compute.R | 1 R/tam_AXsi_fit.R | 1 R/tam_NA_pattern.R | 1 R/tam_Rhat_3splits.R | 1 R/tam_accelerate_parameters.R | 1 R/tam_acceleration_inits.R | 1 R/tam_acceleration_inits_create_list.R | 1 R/tam_acf_matrix.R | 1 R/tam_aggregate.R | 1 R/tam_anticomb2.R | 1 R/tam_args_CALL_search.R | 1 R/tam_args_replace_value.R | 1 R/tam_assign_list_elements.R | 1 R/tam_bayesian_bootstrap.R | 1 R/tam_calc_counts.R | 1 R/tam_calc_exp.R | 1 R/tam_calc_posterior.R | 1 R/tam_calc_prob_helper_subtract_max.R | 1 R/tam_cor_wt.R | 1 R/tam_cov_wt.R | 1 R/tam_csink.R | 1 R/tam_deviance_history_init.R | 1 R/tam_difference_quotient.R | 1 R/tam_dmvnorm.R | 1 R/tam_dtnorm.R | 1 R/tam_evaluate_prior.R | 1 R/tam_fa_reliability_nonlinearSEM.R | 1 R/tam_ginv.R | 1 R/tam_in_names_list.R | 1 R/tam_interval_index.R | 1 R/tam_irf_3pl.R | 1 R/tam_itempartable.R | 1 R/tam_jml_version1.R | 1 R/tam_jml_version1_calc_xsi.R | 1 R/tam_jml_version2.R | 1 R/tam_jml_version2_calc_xsi.R | 1 R/tam_jml_wle.R | 1 R/tam_latreg_ic.R | 1 R/tam_linking_2studies.R | 1 R/tam_linking_2studies_create_M_SD.R | 1 R/tam_linking_2studies_create_M_SD_rownames.R | 1 R/tam_linking_extract_list.R | 1 R/tam_linking_extract_parameters.R | 1 R/tam_linking_extract_parameters_trait_distribution.R | 1 R/tam_linking_include_list.R | 1 R/tam_linking_output_summary.R | 1 R/tam_linking_parameters_select_common_items.R | 1 R/tam_linking_transform_item_parameters.R | 1 R/tam_matrix2.R | 1 R/tam_mml_2pl_mstep_slope.R | 1 R/tam_mml_2pl_sufficient_statistics_item_slope.R | 1 R/tam_mml_3pl_calc_exp.R | 1 R/tam_mml_3pl_calc_ll.R | 1 R/tam_mml_3pl_calc_ll_est_guessing.R | 1 R/tam_mml_3pl_calc_prob.R | 1 R/tam_mml_3pl_calc_total_ll.R | 1 R/tam_mml_3pl_computeB.R | 1 R/tam_mml_3pl_compute_Fdes.R | 1 R/tam_mml_3pl_create_E.R | 1 R/tam_mml_3pl_create_notA.R | 1 R/tam_mml_3pl_deviance.R | 1 R/tam_mml_3pl_distributionmoments.R | 1 R/tam_mml_3pl_expected_counts.R | 1 R/tam_mml_3pl_ic.R | 1 R/tam_mml_3pl_inits_group.R | 1 R/tam_mml_3pl_itempartable.R | 1 R/tam_mml_3pl_mstep_item_guessing.R | 1 R/tam_mml_3pl_mstep_item_intercepts.R | 1 R/tam_mml_3pl_mstep_item_slopes.R | 1 R/tam_mml_3pl_mstep_item_slopes_gammaslope_center.R | 1 R/tam_mml_3pl_mstep_regression.R | 1 R/tam_mml_3pl_skillspace.R | 1 R/tam_mml_3pl_stud_prior_discrete.R | 1 R/tam_mml_3pl_variance_fixed.R | 1 R/tam_mml_3pl_vec_add_increment.R | 1 R/tam_mml_calc_prob.R | 1 R/tam_mml_compute_AXsi.R | 1 R/tam_mml_compute_deviance.R | 1 R/tam_mml_control_list_define.R | 6 R/tam_mml_create_nodes.R | 21 R/tam_mml_create_nodes_multidim_nodes.R | 1 R/tam_mml_ic.R | 1 R/tam_mml_ic_criteria.R | 1 R/tam_mml_inits_beta.R | 1 R/tam_mml_inits_groups.R | 1 R/tam_mml_inits_variance.R | 1 R/tam_mml_inits_xsi.R | 1 R/tam_mml_mfr_collect_xsi_parameters.R | 1 R/tam_mml_mfr_dataprep.R | 1 R/tam_mml_mfr_inits_beta.R | 1 R/tam_mml_mfr_inits_xsi.R | 1 R/tam_mml_mfr_proc_compute_maxKi.R | 1 R/tam_mml_mfr_proc_create_design_matrices.R | 1 R/tam_mml_mfr_proc_delete_missing_items.R | 1 R/tam_mml_mfr_proc_multiple_person_ids.R | 1 R/tam_mml_mfr_proc_response_indicators.R | 1 R/tam_mml_mfr_proc_xsi_setnull.R | 1 R/tam_mml_mstep_intercept.R | 1 R/tam_mml_mstep_intercept_optim.R | 1 R/tam_mml_mstep_intercept_quasi_newton_R.R | 1 R/tam_mml_mstep_regression.R | 7 R/tam_mml_mstep_xsi.R | 1 R/tam_mml_person_EAP.R | 1 R/tam_mml_person_EAP_rel.R | 1 R/tam_mml_person_SD_EAP.R | 1 R/tam_mml_person_maxscore.R | 1 R/tam_mml_person_posterior.R | 1 R/tam_mml_proc_est_xsi_index.R | 1 R/tam_mml_proc_prior_list_xsi.R | 1 R/tam_mml_proc_response_indicators.R | 1 R/tam_mml_proc_unidim_simplify.R | 1 R/tam_mml_proc_xsi_parameter_index_A.R | 1 R/tam_mml_progress_em.R | 1 R/tam_mml_progress_em0.R | 1 R/tam_mml_progress_proc_nodes.R | 1 R/tam_mml_se_AXsi.R | 1 R/tam_mml_sufficient_statistics.R | 1 R/tam_mml_update_stochastic_nodes.R | 11 R/tam_mml_warning_message_multiple_group_models.R | 1 R/tam_mml_wle_check_identifiability.R | 1 R/tam_mml_wle_postproc.R | 1 R/tam_mml_wle_proc_input_data.R | 1 R/tam_mml_wle_theta_inits.R | 1 R/tam_mml_wle_update_theta.R | 1 R/tam_normalize_matrix_rows.R | 1 R/tam_normalize_vector.R | 1 R/tam_osink.R | 1 R/tam_outer.R | 1 R/tam_packageinfo.R | 1 R/tam_parameter_change.R | 1 R/tam_print_call.R | 1 R/tam_print_computation_time.R | 1 R/tam_print_package_rsession.R | 1 R/tam_prior_eval_log_density_one_parameter.R | 1 R/tam_pv_draw_pv_nonparametric.R | 1 R/tam_pv_draw_pv_normal_approximation_1dim.R | 1 R/tam_pv_draw_pv_normal_approximation_multidim.R | 1 R/tam_pv_mcmc_calc_probs.R | 1 R/tam_pv_mcmc_calc_probs_irf_3pl.R | 1 R/tam_pv_mcmc_compute_marginal_likelihood.R | 1 R/tam_pv_mcmc_evaluate_likelihood.R | 1 R/tam_pv_mcmc_inits_MH_sampling_objects.R | 1 R/tam_pv_mcmc_inits_plausible_values_objects.R | 1 R/tam_pv_mcmc_inits_sampled_parameters_objects.R | 1 R/tam_pv_mcmc_inits_theta.R | 1 R/tam_pv_mcmc_likelihood.R | 1 R/tam_pv_mcmc_likelihood_R.R | 1 R/tam_pv_mcmc_parameter_samples.R | 1 R/tam_pv_mcmc_parameter_samples_correlation.R | 1 R/tam_pv_mcmc_parameter_samples_correlation_index.R | 1 R/tam_pv_mcmc_parameter_summary.R | 1 R/tam_pv_mcmc_person_inits_from_resp.R | 1 R/tam_pv_mcmc_postproc_ic.R | 1 R/tam_pv_mcmc_postproc_theta_acceptance_MH.R | 1 R/tam_pv_mcmc_postproc_theta_posterior.R | 1 R/tam_pv_mcmc_prior_density.R | 1 R/tam_pv_mcmc_proc_input.R | 1 R/tam_pv_mcmc_proc_regressors.R | 1 R/tam_pv_mcmc_proposal_theta.R | 1 R/tam_pv_mcmc_pv_acf.R | 1 R/tam_pv_mcmc_refresh_theta.R | 1 R/tam_pv_mcmc_sample_beta_variance.R | 1 R/tam_pv_mcmc_sample_beta_variance_lm_beta.R | 1 R/tam_pv_mcmc_save_parameters.R | 1 R/tam_pv_mcmc_theta_MH_ratio_accept.R | 1 R/tam_pv_mcmc_update_plausible_values.R | 1 R/tam_pv_recommend_tam_pv_mcmc.R | 1 R/tam_pv_sampling_beta.R | 1 R/tam_pv_sampling_theta.R | 1 R/tam_pv_summary_covariance.R | 1 R/tam_rbind_twomatrices.R | 1 R/tam_remove_missings.R | 1 R/tam_round_data_frame.R | 1 R/tam_round_data_frame_print.R | 1 R/tam_rowCumsums.R | 1 R/tam_rowMaxs.R | 1 R/tam_rowcumsums1.R | 1 R/tam_rsessinfo.R | 1 R/tam_solve_ridge.R | 1 R/tam_stud_prior.R | 1 R/tam_stud_prior_multiple_groups.R | 1 R/tam_summary_print_ic.R | 1 R/tam_summary_print_ic_description.R | 1 R/tam_summary_print_ic_one_ic.R | 1 R/tam_theta_sq.R | 1 R/tam_theta_sq1.R | 1 R/tam_thurstonian_threshold.R | 1 R/tam_trim_increment.R | 1 R/tam_vec2symmmatrix.R | 1 R/tam_weighted_stats_select.R | 1 R/tam_wle_print_WLErel.R | 1 R/tam_wle_print_general.R | 1 R/tamaan.3pl.lca.R | 1 R/tamaan.3pl.loclca.R | 1 R/tamaan.3pl.mixture.R | 215 ++-- R/tamaan.3pl.olca.R | 1 R/tamaan.3pl.trait.R | 1 R/tamaan.R | 40 R/tamaan_3pl_mixture_individual_class_probabilities.R |only R/tamaanify.R | 1 R/tamaanify.create.A.R | 1 R/tamaanify.create.Q.R | 1 R/tamaanify.define.method.R | 1 R/tamaanify.grep.linequations.R | 1 R/tamaanify.modelconstraint.loadings.R | 1 R/tamaanify.modelprior.R | 1 R/tamaanify.proc.analysis.R | 1 R/tamaanify.proc.items.R | 1 R/tamaanify.proc.itemtype.R | 1 R/tamaanify.proc.lavaanmodel.R | 1 R/tamaanify.proc.loadings.B.fixed.R | 1 R/tamaanify.proc.modelconstraint.R | 1 R/tamaanify.tam.mml.3pl.deltadesign.R | 1 R/tamaanify.tam.mml.3pl.designMatrices.LCA.R | 1 R/tamaanify.tam.mml.3pl.designMatrices.LOCLCA.R | 1 R/tamaanify.tam.mml.3pl.designMatrices.MIXTURE.R | 1 R/tamaanify.tam.mml.3pl.designMatrices.OLCA.R | 1 R/tamaanify.tam.mml.3pl.designMatrices.TRAIT.R | 1 R/tamaanify.tam.mml.3pldesignMatrices.R | 1 R/tamaanify.variance.fixed.R | 1 R/tamaanify_tam_mml_3pl_create_delta_design.R | 1 R/tamcat.R | 1 R/tampv2datalist.R | 1 R/weighted_curtosis.R | 1 R/weighted_mean.R | 1 R/weighted_quantile.R | 1 R/weighted_quantile_type_selection.R | 1 R/weighted_sd.R | 1 R/weighted_skewness.R | 1 R/weighted_table.R | 1 R/weighted_var.R | 1 R/zzz.R | 1 README.md | 6 data/data.cqc01.rda |binary data/data.cqc02.rda |binary data/data.cqc03.rda |binary data/data.cqc04.rda |binary data/data.cqc05.rda |binary data/data.ctest1.rda |binary data/data.ctest2.rda |binary data/data.ex08.rda |binary data/data.ex10.rda |binary data/data.ex11.rda |binary data/data.ex12.rda |binary data/data.ex14.rda |binary data/data.ex15.rda |binary data/data.ex16.rda |binary data/data.ex17.rda |binary data/data.exJ03.rda |binary data/data.fims.Aus.Jpn.raw.rda |binary data/data.fims.Aus.Jpn.scored.rda |binary data/data.geiser.rda |binary data/data.gpcm.rda |binary data/data.janssen.rda |binary data/data.janssen2.rda |binary data/data.mc.rda |binary data/data.numeracy.rda |binary data/data.sim.facets.rda |binary data/data.sim.mfr.rda |binary data/data.sim.rasch.missing.rda |binary data/data.sim.rasch.pweights.rda |binary data/data.sim.rasch.rda |binary data/data.timssAusTwn.rda |binary data/data.timssAusTwn.scored.rda |binary inst/NEWS | 35 man/DescribeBy.Rd | 1 man/IRT.WrightMap.Rd | 1 man/IRT.data.tam.Rd | 1 man/IRT.drawPV.Rd | 1 man/IRT.expectedCounts.tam.Rd | 1 man/IRT.factor.scores.tam.Rd | 1 man/IRT.frequencies.tam.Rd | 1 man/IRT.informationCurves.Rd | 1 man/IRT.irfprob.tam.Rd | 1 man/IRT.itemfit.Rd | 1 man/IRT.likelihood.tam.Rd | 1 man/IRT.linearCFA.Rd | 1 man/IRT.residuals.Rd | 1 man/IRT.simulate.Rd | 1 man/IRT.threshold.Rd | 1 man/IRT.truescore.Rd | 1 man/IRTLikelihood.cfa.Rd | 1 man/IRTLikelihood.ctt.Rd | 1 man/Scale.Rd | 1 man/TAM-defunct.Rd | 1 man/TAM-package.Rd | 1 man/TAM-utilities.Rd | 1 man/WLErel.Rd | 1 man/anova.tam.Rd | 1 man/cfa.extract.itempars.Rd | 1 man/data.cqc.Rd | 1 man/data.ctest.Rd | 1 man/data.examples.Rd | 1 man/data.fims.Aus.Jpn.Rd | 1 man/data.geiser.Rd | 1 man/data.gpcm.Rd | 1 man/data.janssen.Rd | 1 man/data.mc.Rd | 1 man/data.numeracy.Rd | 1 man/data.sim.mfr.Rd | 1 man/data.sim.rasch.Rd | 1 man/data.timssAusTwn.Rd | 1 man/designMatrices.Rd | 1 man/doparse.Rd | 1 man/lavaanify.IRT.Rd | 1 man/msq.itemfit.Rd | 1 man/plot.tam.Rd | 1 man/plotDevianceTAM.Rd | 1 man/predict.Rd | 1 man/tam.ctt.Rd | 1 man/tam.fa.Rd | 1 man/tam.fit.Rd | 1 man/tam.jml.Rd | 1 man/tam.latreg.Rd | 1 man/tam.linking.Rd | 1 man/tam.mml.3pl.Rd | 1 man/tam.mml.Rd | 27 man/tam.modelfit.Rd | 1 man/tam.pv.Rd | 1 man/tam.se.Rd | 1 man/tam.threshold.Rd | 1 man/tam.wle.Rd | 1 man/tam_NA_pattern.Rd | 1 man/tam_irf_3pl.Rd | 1 man/tamaan.Rd | 7 man/tamaanify.Rd | 1 man/tampv2datalist.Rd | 1 man/weighted_Stats.Rd | 1 src/RcppExports.cpp | 75 - src/init.c | 149 +- src/irt_likelihood_cfa2.cpp | 88 - src/msq_itemfit.cpp | 14 src/prior_normal_density_c.cpp | 145 +- src/rowcumsums_source.cpp | 1 src/tam_calcexp.cpp | 1 src/tam_caux.c | 1 src/tam_ctt_c.cpp | 1 src/tam_fit_simul.cpp | 1 src/tam_helper_ccode.cpp | 1 src/tam_mml_3pl_helper_functions.cpp | 1 src/tam_mml_mfr_helper.cpp | 165 +-- src/tam_modelfit_aux.cpp | 1 src/tam_pv_mcmc.cpp | 31 src/tam_pv_mcmc_calc_probs_irf_3pl_rcpp.cpp | 117 +- src/tam_pv_multivariate_normal_approximation.cpp | 93 - src/tamwle_helper_ccode.cpp | 1 459 files changed, 1170 insertions(+), 1575 deletions(-)
Title: Environment for Evaluating Recommender Systems
Description: Processes standard recommendation datasets (e.g., a user-item rating matrix) as input and generates rating predictions and lists of recommended items. Standard algorithm implementations which are included in this package are the following: Global/Item/User-Average baselines, Weighted Slope One, Item-Based KNN, User-Based KNN, FunkSVD, BPR and weighted ALS. They can be assessed according to the standard offline evaluation methodology (Shani, et al. (2011) <doi:10.1007/978-0-387-85820-3_8>) for recommender systems using measures such as MAE, RMSE, Precision, Recall, F1, AUC, NDCG, RankScore and coverage measures. The package (Coba, et al.(2017) <doi: 10.1007/978-3-319-60042-0_36>) is intended for rapid prototyping of recommendation algorithms and education purposes.
Author: Ludovik Çoba [aut, cre, cph],
Markus Zanker [ctb],
Panagiotis Symeonidis [ctb]
Maintainer: Ludovik Çoba <Ludovik.Coba@inf.unibz.it>
Diff between rrecsys versions 0.9.7.1 dated 2017-08-18 and 0.9.7.2 dated 2017-11-16
DESCRIPTION | 8 - MD5 | 34 ++--- R/AAA_registry.R | 134 ++++++++++----------- R/ALG_BPR.R | 16 +- R/ALG_slopeOne.R | 198 ++++++++++++++++---------------- R/ALG_wALS.R | 198 ++++++++++++++++---------------- R/ZZZ.R | 4 R/convergence.R | 228 ++++++++++++++++++------------------- R/evalRec.R | 13 -- R/rrecsys.R | 22 +-- build/vignette.rds |binary inst/doc/c1_dispacherregistry.html | 16 +- src/FSVDupdater.cpp | 8 - src/FSVDupdaterSparseMat.cpp | 8 - src/ItemSimilSparse.cpp | 9 - src/UserSimilSparseMat.cpp | 6 src/predictIB.cpp | 1 src/predictUBSparse.cpp | 10 - 18 files changed, 451 insertions(+), 462 deletions(-)
Title: R/Myrrix Interface Jars
Description: External jars required for package 'Myrrix'. 'Myrrix' is a recommendation engine.
Author: Jan Wijffels [aut, cre]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between Myrrixjars versions 1.0-1 dated 2013-07-26 and 1.0-2 dated 2017-11-16
DESCRIPTION | 15 +++++++-------- MD5 | 5 +++-- NEWS | 11 +++++++---- java |only 4 files changed, 17 insertions(+), 14 deletions(-)
Title: The Faster Hash Map
Description: Provides a hash table class for fast
key-value storage of atomic vector types.
Author: Nathan Russell [aut, cre]
Maintainer: Nathan Russell <russell.nr2012@gmail.com>
Diff between hashmap versions 0.2.1 dated 2017-11-15 and 0.2.2 dated 2017-11-16
DESCRIPTION | 8 +++---- MD5 | 4 +-- inst/include/hashmap/sparsepp/spp_utils.h | 34 ++++++++++++++++-------------- 3 files changed, 25 insertions(+), 21 deletions(-)
Title: Interface to Myrrix. Myrrix is a Complete, Real-Time, Scalable
Clustering and Recommender System, Evolved from Apache Mahout
Description: Recommendation engine based on 'Myrrix'. 'Myrrix' is a complete,
real-time, scalable clustering and recommender system, evolved from 'Apache Mahout'.
It uses Alternating Least Squares to build a recommendation engine.
Author: Jan Wijffels [aut, cre]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between Myrrix versions 1.1 dated 2013-12-12 and 1.2 dated 2017-11-16
DESCRIPTION | 18 +++++----- MD5 | 13 ++++--- NEWS | 18 ++++++---- R/HyperParameters.R | 73 +++++++++++++++++++++---------------------- build/vignette.rds |binary inst/dev |only inst/doc/packageShowCase.R | 20 +++++------ inst/doc/packageShowCase.pdf |binary 8 files changed, 74 insertions(+), 68 deletions(-)
Title: Feature Selection (Including Multiple Solutions) and Bayesian
Networks
Description: Feature selection methods for identifying minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin. Reference: Feature Selection with the R Package MXM: Discovering Statistically Equivalent Feature Subsets, Lagani, V. and Athineou, G. and Farcomeni, A. and Tsagris, M. and Tsamardinos, I. (2017). Journal of Statistical Software, 80(7). <doi:10.18637/jss.v080.i07>.
Author: Michail Tsagris [aut, cre], Ioannis Tsamardinos [aut, cph], Vincenzo Lagani [aut, cph], Giorgos Athineou [aut], Giorgos Borboudakis [ctb], Anna Roumpelaki [ctb]
Maintainer: Michail Tsagris <mtsagris@csd.uoc.gr>
Diff between MXM versions 1.2.5 dated 2017-11-15 and 1.3.0 dated 2017-11-16
DESCRIPTION | 16 ++++---- MD5 | 84 ++++++++++++++++++++++----------------------- R/beta.mod.R | 4 +- R/ebic.fbed.clogit.R | 42 +++++++++++++++------- R/permClogit.R | 2 - R/zip.mod.R | 2 - build/vignette.rds |binary inst/doc/article.ltx | 2 - inst/doc/article.pdf |binary inst/doc/guide.ltx | 2 - inst/doc/guide.pdf |binary man/MXM-package.Rd | 7 +-- man/SES.Rd | 7 +-- man/SES.temporal.Rd | 14 ++++--- man/auc.Rd | 2 - man/beta.mod.Rd | 12 +++--- man/bic.fsreg.Rd | 11 +---- man/bic.glm.fsreg.Rd | 5 -- man/bn.skel.utils.Rd | 4 -- man/bs.reg.Rd | 4 -- man/censIndCR.Rd | 18 +++------ man/ci.mm.Rd | 5 -- man/condis.Rd | 2 - man/ebic.glmm.bsreg.Rd | 14 ++++--- man/fbed.glmm.reg.Rd | 14 ++++--- man/fs.reg.Rd | 4 -- man/gSquare.Rd | 2 - man/glmm.bsreg.Rd | 14 ++++--- man/iamb.Rd | 7 --- man/mmmb.Rd | 2 - man/mmpc.or.Rd | 2 - man/mmpc.temporal.model.Rd | 18 +++++---- man/tc.plot.Rd | 10 ++--- man/testIndBeta.Rd | 2 - man/testIndClogit.Rd | 2 - man/testIndFisher.Rd | 3 - man/testIndGLMM.Rd | 9 ++-- man/testIndLogistic.Rd | 2 - man/testIndPois.Rd | 4 -- man/testIndReg.Rd | 3 - man/zip.mod.Rd | 6 +-- vignettes/article.ltx | 2 - vignettes/guide.ltx | 2 - 43 files changed, 165 insertions(+), 202 deletions(-)
Title: Markov-Switching GARCH Models
Description: Fit (by Maximum Likelihood or MCMC/Bayesian), simulate, and forecast various Markov-Switching GARCH models as described in Ardia et al. (2017) <https://ssrn.com/abstract=2845809>.
Author: David Ardia [aut],
Keven Bluteau [aut, cre],
Kris Boudt [ctb],
Leopoldo Catania [aut],
Brian Peterson [ctb],
Denis-Alexandre Trottier [aut]
Maintainer: Keven Bluteau <Keven.Bluteau@unine.ch>
Diff between MSGARCH versions 1.3 dated 2017-10-26 and 2.0 dated 2017-11-16
MSGARCH-1.3/MSGARCH/R/AIC.R |only MSGARCH-1.3/MSGARCH/R/BIC.R |only MSGARCH-1.3/MSGARCH/R/Forecast.R |only MSGARCH-1.3/MSGARCH/R/Pred.R |only MSGARCH-1.3/MSGARCH/R/Sim.R |only MSGARCH-1.3/MSGARCH/man/AIC.Rd |only MSGARCH-1.3/MSGARCH/man/BIC.Rd |only MSGARCH-1.3/MSGARCH/man/Forecast.Rd |only MSGARCH-1.3/MSGARCH/man/Pred.Rd |only MSGARCH-1.3/MSGARCH/man/Sim.Rd |only MSGARCH-2.0/MSGARCH/DESCRIPTION | 8 MSGARCH-2.0/MSGARCH/MD5 | 94 ++++---- MSGARCH-2.0/MSGARCH/NAMESPACE | 34 +-- MSGARCH-2.0/MSGARCH/NEWS | 23 +- MSGARCH-2.0/MSGARCH/R/CondVol.R | 53 +++- MSGARCH-2.0/MSGARCH/R/CreateSpec.R | 6 MSGARCH-2.0/MSGARCH/R/DIC.R | 6 MSGARCH-2.0/MSGARCH/R/FitMCMC.R | 53 ++-- MSGARCH-2.0/MSGARCH/R/FitML.R | 18 - MSGARCH-2.0/MSGARCH/R/Kernel.R | 4 MSGARCH-2.0/MSGARCH/R/Likelihood.R | 7 MSGARCH-2.0/MSGARCH/R/Pit.R | 127 +++++++---- MSGARCH-2.0/MSGARCH/R/Plot.R | 27 +- MSGARCH-2.0/MSGARCH/R/PredPDF.R |only MSGARCH-2.0/MSGARCH/R/Print.R | 55 +++- MSGARCH-2.0/MSGARCH/R/Risk.R | 152 +++++++++---- MSGARCH-2.0/MSGARCH/R/Samplers.R | 2 MSGARCH-2.0/MSGARCH/R/State.R | 37 +-- MSGARCH-2.0/MSGARCH/R/Transmat.R | 14 - MSGARCH-2.0/MSGARCH/R/UncVol.R | 36 +-- MSGARCH-2.0/MSGARCH/R/Utils.R | 13 - MSGARCH-2.0/MSGARCH/R/Volatility.R | 28 +- MSGARCH-2.0/MSGARCH/R/predict.R |only MSGARCH-2.0/MSGARCH/R/simulate.R |only MSGARCH-2.0/MSGARCH/R/zzz.R | 4 MSGARCH-2.0/MSGARCH/man/CreateSpec.Rd | 6 MSGARCH-2.0/MSGARCH/man/DIC.Rd | 2 MSGARCH-2.0/MSGARCH/man/FitMCMC.Rd | 41 ++- MSGARCH-2.0/MSGARCH/man/FitML.Rd | 10 MSGARCH-2.0/MSGARCH/man/PIT.Rd | 36 +-- MSGARCH-2.0/MSGARCH/man/PredPdf.Rd |only MSGARCH-2.0/MSGARCH/man/Risk.Rd | 50 ++-- MSGARCH-2.0/MSGARCH/man/State.Rd | 16 - MSGARCH-2.0/MSGARCH/man/TransMat.Rd | 8 MSGARCH-2.0/MSGARCH/man/UncVol.Rd | 22 - MSGARCH-2.0/MSGARCH/man/Volatility.Rd | 8 MSGARCH-2.0/MSGARCH/man/predict.Rd |only MSGARCH-2.0/MSGARCH/man/simulate.Rd |only MSGARCH-2.0/MSGARCH/src/MSgarch.h | 10 MSGARCH-2.0/MSGARCH/src/SingleRegime.h | 12 - MSGARCH-2.0/MSGARCH/tests/testthat/test_MCMC.R | 56 ++--- MSGARCH-2.0/MSGARCH/tests/testthat/test_MLE.R | 212 +++++++++---------- MSGARCH-2.0/MSGARCH/tests/testthat/test_PRED_PIT.R | 56 ++--- MSGARCH-2.0/MSGARCH/tests/testthat/test_Risk.R | 6 MSGARCH-2.0/MSGARCH/tests/testthat/test_Simulation.R | 76 +++--- MSGARCH-2.0/MSGARCH/tests/testthat/test_Volatility.R | 56 ++--- 56 files changed, 843 insertions(+), 641 deletions(-)
Title: Artificial Neural Networks for Anomaly Detection
Description: Training of general classification and regression neural networks using
gradient descent. Special features include a function for training replicator
neural networks and a function for training autoencoders. Multiple activation and
cost functions (including Huber and pseudo-Huber) are supported, as well as L1
and L2 regularization, momentum, early stopping and the possibility to specify
a learning rate schedule. The package contains a vectorized gradient descent
implementation which facilitates faster training through batch learning.
Author: Bart Lammers
Maintainer: Bart Lammers <bart.f.lammers@gmail.com>
Diff between ANN2 versions 1.2 dated 2017-11-15 and 1.3 dated 2017-11-16
DESCRIPTION | 6 +- MD5 | 8 +-- R/callable.R | 98 +++++++++++++++++++----------------- R/required-functions.R | 130 +++++++++++++++++++------------------------------ src/rcpp-nn.cpp | 4 - 5 files changed, 113 insertions(+), 133 deletions(-)
Title: A Bunch of Structure and Sequence Analysis
Description: Reads and plots phylogenetic placements obtained using the 'pplacer' and 'guppy' softwares <https://matsen.github.io/pplacer/>.
Author: Pierre Lefeuvre
Maintainer: Pierre Lefeuvre <pierre.lefeuvre@cirad.fr>
Diff between BoSSA versions 2.2 dated 2017-11-14 and 2.3 dated 2017-11-16
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/plot.pplace.R | 4 +++- R/print.jplace.R | 1 + R/read_jplace.R | 6 ++++-- build/partial.rdb |binary inst/doc/bossa-analysis.Rmd | 2 +- inst/doc/bossa-analysis.html | 22 +++++++++++----------- inst/doc/bossa-refpkg.html | 14 +++++++------- man/read_jplace.Rd | 5 +++-- vignettes/bossa-analysis.Rmd | 2 +- 11 files changed, 45 insertions(+), 39 deletions(-)
Title: Schedule R Scripts and Processes with the Windows Task Scheduler
Description: Schedule R scripts/processes with the Windows task scheduler. This
allows R users to automate R processes on specific time points from R itself.
Author: c(person("Jan", "Wijffels", role = c("aut", "cre", "cph"), email =
"jwijffels@bnosac.be"), person("BNOSAC", role = "cph"), person("Oliver", "Belmans", role = c("cph", "cre")))
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between taskscheduleR versions 1.0 dated 2017-03-03 and 1.1 dated 2017-11-16
DESCRIPTION | 12 +++++------ MD5 | 30 ++++++++++++++--------------- NAMESPACE | 1 R/pkg.R | 1 R/taskscheduleR.R | 5 +++- build/vignette.rds |binary inst/NEWS | 4 +++ inst/doc/taskscheduleR.html | 8 +++---- man/taskcheduler_runnow.Rd | 1 man/taskcheduler_stop.Rd | 1 man/taskscheduleR-package.Rd | 3 -- man/taskschedulerAddin.Rd | 1 man/taskscheduler_create.Rd | 1 man/taskscheduler_delete.Rd | 1 man/taskscheduler_ls.Rd | 1 tests/testthat/test-taskscheduler_create.R | 7 ++++++ 16 files changed, 43 insertions(+), 34 deletions(-)
Title: Call Google's 'Natural Language' API, 'Cloud Translation' API
and 'Cloud Speech' API
Description: Call 'Google Cloud' machine learning APIs for text and speech tasks.
Call the 'Cloud Translation' API <https://cloud.google.com/translate/> for detection
and translation of text, the 'Natural Language' API <https://cloud.google.com/natural-language/> to
analyse text for sentiment, entities or syntax or the 'Cloud Speech' API
<https://cloud.google.com/speech/> to transcribe sound files to text.
Author: Mark Edmondson [aut, cre],
Neal Richardson [rev] (Neal reviewed the package for ropensci, see
<https://github.com/ropensci/onboarding/issues/127>),
Julia Gustavsen [rev] (Julia reviewed the package for ropensci, see
<https://github.com/ropensci/onboarding/issues/127>)
Maintainer: Mark Edmondson <r@sunholo.com>
Diff between googleLanguageR versions 0.1.0 dated 2017-09-22 and 0.1.1 dated 2017-11-16
googleLanguageR-0.1.0/googleLanguageR/tests/testthat/mock |only googleLanguageR-0.1.1/googleLanguageR/DESCRIPTION | 6 googleLanguageR-0.1.1/googleLanguageR/MD5 | 53 +++--- googleLanguageR-0.1.1/googleLanguageR/NEWS.md | 7 googleLanguageR-0.1.1/googleLanguageR/R/natural-language.R | 7 googleLanguageR-0.1.1/googleLanguageR/R/speech.R | 23 ++ googleLanguageR-0.1.1/googleLanguageR/R/utilities.R | 7 googleLanguageR-0.1.1/googleLanguageR/R/version.R |only googleLanguageR-0.1.1/googleLanguageR/README.md | 12 + googleLanguageR-0.1.1/googleLanguageR/inst/doc/nlp.html | 20 +- googleLanguageR-0.1.1/googleLanguageR/inst/doc/setup.html | 4 googleLanguageR-0.1.1/googleLanguageR/inst/doc/speech.Rmd | 69 +++++--- googleLanguageR-0.1.1/googleLanguageR/inst/doc/speech.html | 78 +++++----- googleLanguageR-0.1.1/googleLanguageR/inst/doc/translation.html | 18 +- googleLanguageR-0.1.1/googleLanguageR/man/gl_nlp.Rd | 4 googleLanguageR-0.1.1/googleLanguageR/man/gl_speech.Rd | 3 googleLanguageR-0.1.1/googleLanguageR/tests/language.googleapis.com/v1/documents-annotateText-45bb10-POST.json | 7 googleLanguageR-0.1.1/googleLanguageR/tests/language.googleapis.com/v1/documents-annotateText-89db45-POST.json | 22 -- googleLanguageR-0.1.1/googleLanguageR/tests/speech.googleapis.com/v1/operations |only googleLanguageR-0.1.1/googleLanguageR/tests/speech.googleapis.com/v1/speech-longrunningrecognize-ae1b66-POST.json |only googleLanguageR-0.1.1/googleLanguageR/tests/speech.googleapis.com/v1/speech-longrunningrecognize-e400d0-POST.json | 2 googleLanguageR-0.1.1/googleLanguageR/tests/speech.googleapis.com/v1/speech-recognize-e400d0-POST.json | 36 ++-- googleLanguageR-0.1.1/googleLanguageR/tests/testthat/test_integration.R | 26 ++- googleLanguageR-0.1.1/googleLanguageR/tests/testthat/test_unit.R | 60 +++++-- googleLanguageR-0.1.1/googleLanguageR/tests/translation.googleapis.com/language/translate/v2-a43ef9-POST.json |only googleLanguageR-0.1.1/googleLanguageR/tests/translation.googleapis.com/language/translate/v2/detect-b110ba-POST.json | 6 googleLanguageR-0.1.1/googleLanguageR/tests/translation.googleapis.com/language/translate/v2/detect-c6a946-POST.json | 4 googleLanguageR-0.1.1/googleLanguageR/vignettes/speech.Rmd | 69 +++++--- 28 files changed, 299 insertions(+), 244 deletions(-)
More information about googleLanguageR at CRAN
Permanent link
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 2.3.0 dated 2017-11-08 and 2.3.1 dated 2017-11-16
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS | 9 +++++++-- R/tweedie.R | 12 ++++++------ build/partial.rdb |binary inst/CITATION | 2 +- man/tweedie-internal.Rd | 4 ++-- man/tweedie-package.Rd | 46 +++++++++++++++++++++++----------------------- 8 files changed, 51 insertions(+), 46 deletions(-)
More information about SequentialDesign at CRAN
Permanent link
Title: Australian Tax Policy Analysis
Description: A series of functions focused on costing and evaluating Australian tax policy in support of the Grattan Institute's Australian Perspectives program. For access to the 'taxstats' package, please run install.packages("taxstats", repos = "https://hughparsonage.github.io/drat/", type = "source"). N.B. The 'taxstats' package is approximately 50 MB.
Author: Hugh Parsonage [aut, cre],
Tim Cameron [aut],
Brendan Coates [aut],
William Young [aut],
Ittima Cherastidtham [dtc],
W. Karsten [ctb],
M. Enrique Garcia [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between grattan versions 1.5.2.4 dated 2017-10-23 and 1.5.2.5 dated 2017-11-16
DESCRIPTION | 8 +- MD5 | 54 +++++++++---------- NEWS.md | 10 +++ R/cpi_inflator.R | 4 + R/cpi_inflator_quarters.R | 7 +- R/sysdata.rda |binary README.md | 70 +++++++++++++++++++++++-- build/vignette.rds |binary data/residential_property_prices.rda |binary inst/doc/Modelling-superannuation-changes.R | 11 ++- inst/doc/Modelling-superannuation-changes.Rmd | 11 ++- inst/doc/Modelling-superannuation-changes.html | 43 ++++++++------- inst/doc/Performance-of-project.R | 9 ++- inst/doc/Performance-of-project.Rmd | 9 ++- inst/doc/Performance-of-project.html | 15 +++-- inst/doc/companion-to-sample-file-1314.R | 9 ++- inst/doc/companion-to-sample-file-1314.Rmd | 9 ++- inst/doc/companion-to-sample-file-1314.html | 50 ++++++++++------- inst/doc/differential-uprating.R | 9 ++- inst/doc/differential-uprating.Rmd | 9 ++- inst/doc/differential-uprating.html | 6 +- man/cpi_inflator.Rd | 4 + man/cpi_inflator_quarters.Rd | 6 +- tests/testthat/test_lf_inflator.R | 15 +++++ vignettes/Modelling-superannuation-changes.Rmd | 11 ++- vignettes/Performance-of-project.Rmd | 9 ++- vignettes/companion-to-sample-file-1314.Rmd | 9 ++- vignettes/differential-uprating.Rmd | 9 ++- 28 files changed, 290 insertions(+), 116 deletions(-)
Title: Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Description: Some helpful extensions and modifications to the 'ggplot2'
package. In particular, this package makes it easy to combine multiple
'ggplot2' plots into one and label them with letters, e.g. A, B, C, etc.,
as is often required for scientific publications. The package also provides
a streamlined and clean theme that is used in the Wilke lab, hence the
package name, which stands for Claus O. Wilke's plot package.
Author: Claus O. Wilke [aut, cre],
RStudio [cph] (Copyright for ggplot2 code copied to cowplot)
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between cowplot versions 0.8.0 dated 2017-07-30 and 0.9.0 dated 2017-11-16
DESCRIPTION | 21 + MD5 | 70 +++--- NAMESPACE | 7 NEWS | 19 + R/axis_canvas.R |only R/draw.R | 224 +++++++++++++------- R/get_panel.R |only R/plot_grid.R | 17 - R/plot_to_gtable.R |only R/themes.R | 23 +- R/utils_ggplot2.R |only README.md | 5 build/vignette.rds |binary inst/doc/axis_position.html | 330 +++++++++++++++++++++++------ inst/doc/introduction.R | 23 ++ inst/doc/introduction.Rmd | 35 +++ inst/doc/introduction.html | 457 ++++++++++++++++++++++++++++++----------- inst/doc/plot_annotations.html | 356 ++++++++++++++++++++++++------- inst/doc/plot_grid.R | 6 inst/doc/plot_grid.Rmd | 6 inst/doc/plot_grid.html | 408 +++++++++++++++++++++++++++--------- inst/doc/shared_legends.html | 440 ++++++++++++++++++++++++++++----------- man/axis_canvas.Rd |only man/draw_figure_label.Rd | 8 man/draw_grob.Rd | 7 man/draw_image.Rd |only man/draw_label.Rd | 38 ++- man/draw_line.Rd | 17 + man/draw_plot.Rd | 10 man/draw_text.Rd | 27 ++ man/get_panel.Rd |only man/ggdraw.Rd | 6 man/insert_xaxis_grob.Rd |only man/plot_grid.Rd | 17 - man/plot_to_gtable.Rd |only man/theme_map.Rd |only tests |only vignettes/introduction.Rmd | 35 +++ vignettes/plot_grid.Rmd | 6 39 files changed, 1960 insertions(+), 658 deletions(-)
Title: Threshold Regression for Interval-Censored Data with a Cure Rate
Option
Description: Fit a threshold regression model for Interval Censored Data based on the first-hitting-time of a boundary by the sample path of a Wiener diffusion process. The threshold regression methodology is well suited to applications involving survival and time-to-event data.
Author: Man-Hua Chen
Maintainer: Man-Hua Chen <mchen@mail.tku.edu.tw>
Diff between thregI versions 1.0.3 dated 2017-05-03 and 1.0.4 dated 2017-11-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/predict.thregIcure.R | 4 ++-- R/thregI.R | 43 ++++++++++++++++++++++--------------------- R/thregIcure.R | 39 ++++++++++++++++++--------------------- 5 files changed, 50 insertions(+), 52 deletions(-)