Fri, 17 Nov 2017

Package protr updated to version 1.5-0 with previous version 1.4-2 dated 2017-09-28

Title: Generating Various Numerical Representation Schemes for Protein Sequences
Description: Comprehensive toolkit for generating various numerical features of protein sequences described in Xiao et al. (2015) <DOI:10.1093/bioinformatics/btv042>. For full functionality, the software 'ncbi-blast+' is needed, see <https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download> for more information.
Author: Nan Xiao [aut, cre] (0000-0002-0250-5673), Qing-Song Xu [aut], Dong-Sheng Cao [aut]
Maintainer: Nan Xiao <me@nanx.me>

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Package ompr updated to version 0.7.0 with previous version 0.6.0 dated 2017-04-17

Title: Model and Solve Mixed Integer Linear Programs
Description: Model mixed integer linear programs in an algebraic way directly in R. The model is solver-independent and thus offers the possibility to solve a model with different solvers. It currently only supports linear constraints and objective functions. See the 'ompr' website <https://dirkschumacher.github.io/ompr> for more information, documentation and examples.
Author: Dirk Schumacher [aut, cre]
Maintainer: Dirk Schumacher <mail@dirk-schumacher.net>

Diff between ompr versions 0.6.0 dated 2017-04-17 and 0.7.0 dated 2017-11-17

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Package wrapr updated to version 1.0.1 with previous version 1.0.0 dated 2017-10-04

Title: Wrap R Functions for Debugging and Parametric Programming
Description: Powerful tools for writing and debugging R code. Provides: 'let()' which converts non-standard evaluation interfaces to parametric standard evaluation interface, 'DebugFnW()' to capture function context on error for debugging, and ':=' named map builder, and lambda-abstraction.
Author: John Mount [aut, cre], Nina Zumel [aut], Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>

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Package usethis updated to version 1.1.0 with previous version 1.0.0 dated 2017-10-22

Title: Automate Package and Project Setup
Description: Automate package and project setup tasks that are otherwise performed manually. This includes setting up unit testing, test coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio' projects, and more.
Author: Hadley Wickham [aut, cre] (0000-0003-4757-117X), RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package RLT updated to version 3.2.0 with previous version 3.1.0 dated 2017-04-09

Title: Reinforcement Learning Trees
Description: Random forest with a variety of additional features for regression, classification and survival analysis. The features include: parallel computing with OpenMP, embedded model for selecting the splitting variable (based on Zhu, Zeng & Kosorok, 2015), subject weight, variable weight, tracking subjects used in each tree, etc.
Author: Ruoqing Zhu <teazrq@gmail.com>
Maintainer: Ruoqing Zhu <teazrq@gmail.com>

Diff between RLT versions 3.1.0 dated 2017-04-09 and 3.2.0 dated 2017-11-17

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Package seplyr updated to version 0.1.6 with previous version 0.1.5 dated 2017-08-28

Title: Standard Evaluation Interfaces for Common 'dplyr' Tasks
Description: The 'seplyr' (standard evaluation data.frame 'dplyr') package supplies standard evaluation adapter methods for important common 'dplyr' methods that currently have a non-standard programming interface. This allows the analyst to use 'dplyr' to perform fundamental data transformation steps such as arranging rows, grouping rows, aggregating selecting columns without having to use learn the details of 'rlang'/'tidyeval' non-standard evaluation and without continuing to rely on now deprecated 'dplyr' "underscore verbs." In addition the 'seplyr' package supplies several new "key operations bound together" methods. These include 'group_summarize()' (which combines grouping, arranging and calculation in an atomic unit), 'add_group_summaries()' (which joins grouped summaries into a 'data.frame' in a well documented manner), and 'add_group_indices()' (which adds per-group identifies to a 'data.frame' without depending on row-order).
Author: John Mount [aut, cre], Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>

Diff between seplyr versions 0.1.5 dated 2017-08-28 and 0.1.6 dated 2017-11-17

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Package jagsUI updated to version 1.4.8 with previous version 1.4.4 dated 2016-12-03

Title: A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
Description: A set of wrappers around 'rjags' functions to run Bayesian analyses in 'JAGS' (specifically, via 'libjags'). A single function call can control adaptive, burn-in, and sampling MCMC phases, with MCMC chains run in sequence or in parallel. Posterior distributions are automatically summarized (with the ability to exclude some monitored nodes if desired) and functions are available to generate figures based on the posteriors (e.g., predictive check plots, traceplots). Function inputs, argument syntax, and output format are nearly identical to the 'R2WinBUGS'/'R2OpenBUGS' packages to allow easy switching between MCMC samplers.
Author: Ken Kellner <contact@kenkellner.com>
Maintainer: Ken Kellner <contact@kenkellner.com>

Diff between jagsUI versions 1.4.4 dated 2016-12-03 and 1.4.8 dated 2017-11-17

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Package ores updated to version 0.3.1 with previous version 0.3.0 dated 2017-08-02

Title: Connector to the Objective Revision Evaluation Service (ORES)
Description: A connector to ORES (<http://ores.wmflabs.org/>), an AI project to provide edit scoring for content on Wikipedia and other Wikimedia projects. This lets a researcher identify if edits are likely to be reverted, damaging, or made in good faith.
Author: Oliver Keyes [aut, cre], Aaron Halfaker [ctb], Yuvi Panda [ctb]
Maintainer: Oliver Keyes <ironholds@gmail.com>

Diff between ores versions 0.3.0 dated 2017-08-02 and 0.3.1 dated 2017-11-17

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New package YPInterimTesting with initial version 0.1.0
Package: YPInterimTesting
Type: Package
Title: Interim Monitoring Using Adaptively Weighted Log-Rank Test in Clinical Trials
Version: 0.1.0
Author: Daewoo Pak and Song Yang
Maintainer: Daewoo Pak <heavyrain.pak@gmail.com>
Description: Provide monitoring boundaries for interim testing using the adaptively weighted log-rank test developed by Yang and Prentice (2010 <doi:10.1111/j.1541-0420.2009.01243.x>). The package use a re-sampling method to obtain stopping boundaries in sequential designs. The output consists of stopping boundaries at the interim looks along with nominal p-values defined as the probability of the test exceeding the specific observed value or critical value, regardless of the test behavior at other looks. The asymptotic distribution of the test statistics of the adaptively weighted log-rank test at the interim looks is examined in Yang (2017, pre-print).
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Imports: Rcpp
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2017-11-17 18:54:40 UTC; daewoo
Repository: CRAN
Date/Publication: 2017-11-17 19:05:19 UTC

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New package spotifyr with initial version 1.0.0
Package: spotifyr
Title: Pull Track Audio Features from the 'Spotify' Web API
Version: 1.0.0
Authors@R: person("Charlie", "Thompson", email = "charles.thompson@barcelonagse.eu", role = c("aut", "cre"))
Description: A wrapper for pulling track audio features from the 'Spotify' Web API <http://developer.spotify.com/web-api> in bulk. By automatically batching API requests, it allows you to enter an artist's name and retrieve their entire discography in seconds, along with audio features and track/album popularity metrics. You can also pull song and playlist information for a given 'Spotify' user (including yourself!).
Depends: R (>= 3.3.3)
Imports: dplyr, purrr, tidyr, httr, lubridate
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: testthat
URL: http://github.com/charlie86/spotifyr
BugReports: http://github.com/charlie86/spotifyr/issues
NeedsCompilation: no
Packaged: 2017-11-17 15:28:19 UTC; chuck
Author: Charlie Thompson [aut, cre]
Maintainer: Charlie Thompson <charles.thompson@barcelonagse.eu>
Repository: CRAN
Date/Publication: 2017-11-17 18:24:19 UTC

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Package spectrolab updated to version 0.0.3 with previous version 0.0.2 dated 2017-09-14

Title: Class and Methods for Hyperspectral Data
Description: Input/Output, processing and visualization of spectra from field spectrometer vendors, including SVC (Spectra Vista), ASD and PSR (Spectral Evolution). Implements an S3 class 'spectra' that other packages can build on. Provides methods to access, plot, manipulate, splice sensor overlap, vector normalize and smooth spectra.
Author: Jose Eduardo Meireles [aut, cre], Anna K. Schweiger [aut], Jeannine Cavender-Bares [aut]
Maintainer: Jose Eduardo Meireles <meireles@umn.edu>

Diff between spectrolab versions 0.0.2 dated 2017-09-14 and 0.0.3 dated 2017-11-17

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New package ordinalClust with initial version 1.1
Package: ordinalClust
Type: Package
Title: Ordinal Data Clustering, Co-Clustering and Classification
Version: 1.1
Date: 2017-11-16
Author: Margot Selosse, Julien Jacques, Christophe Biernacki
Maintainer: Margot Selosse <margot.selosse@gmail.com>
Description: Ordinal data classification, clustering and co-clustering using model-based approach with the Bos distribution for ordinal data (Christophe Biernacki and Julien Jacques (2016) <doi:10.1007/s11222-015-9585-2>).
Imports: Rcpp (>= 0.12.10)
LinkingTo: Rcpp, RcppArmadillo
Depends: stats (>= 3.3.2), progress (>= 1.1.2)
License: GPL (>= 3)
Suggests: knitr, rmarkdown, caret, ggplot2
VignetteBuilder: knitr
LazyData: true
SystemRequirements: C++11
NeedsCompilation: yes
Packaged: 2017-11-17 17:45:46 UTC; Admin
Repository: CRAN
Date/Publication: 2017-11-17 18:48:08 UTC

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Package scorecard updated to version 0.1.3 with previous version 0.1.2 dated 2017-10-19

Title: Credit Risk Scorecard
Description: Makes the development of credit risk scorecard easily and efficiently by providing functions such as information value, variable filter, optimal woe binning, scorecard scaling and performance evaluation etc. The references including: 1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard: Development and Implementation Using SAS. 2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards. Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie
Maintainer: Shichen Xie <xie@shichen.name>

Diff between scorecard versions 0.1.2 dated 2017-10-19 and 0.1.3 dated 2017-11-17

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Package Rgretl updated to version 0.1.6 with previous version 0.1.5 dated 2017-11-14

Title: Interface to 'gretlcli'
Description: An interface to 'GNU gretl': running 'gretl' scripts from, estimating econometric models with backward passing of model results, opening 'gretl' data files (.gdt). 'gretl' can be downloaded from <http://gretl.sourceforge.net>. This package could make life on introductory/intermediate econometrics courses much easier: full battery of the required regression diagnostics, including White's heteroskedasticity test, restricted ols estimation, advanced weak instrument test after iv estimation, very convenient dealing with lagged variables in models, standard case treatment in unit root tests, vector auto- regressions, and vector error correction models. Datasets for 8 popular econometrics textbooks can be installed into 'gretl' from its server. All datasets can be easily imported using this package.
Author: Oleh Komashko
Maintainer: Oleh Komashko <oleg_komashko@ukr.net>

Diff between Rgretl versions 0.1.5 dated 2017-11-14 and 0.1.6 dated 2017-11-17

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Package imfr updated to version 0.1.5 with previous version 0.1.4 dated 2017-03-21

Title: Download Data from the International Monetary Fund's Data API
Description: Explore and download data from the International Monetary Fund's data API <http://data.imf.org/>.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>

Diff between imfr versions 0.1.4 dated 2017-03-21 and 0.1.5 dated 2017-11-17

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Package userfriendlyscience updated to version 0.7.0 with previous version 0.6-1 dated 2017-05-09

Title: Quantitative Analysis Made Accessible
Description: Contains a number of functions that serve two goals. First, to make R more accessible to people migrating from SPSS by adding a number of functions that behave roughly like their SPSS equivalents (also see <http://rosettastats.com>). Second, to make a number of slightly more advanced functions more user friendly to relatively novice users. The package also conveniently houses a number of additional functions that are intended to increase the quality of methodology and statistics in psychology, not by offering technical solutions, but by shifting perspectives, for example towards reasoning based on sampling distributions as opposed to on point estimates.
Author: Gjalt-Jorn Peters [aut, cre], Verboon Peter [ctb], Green James [ctb]
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@userfriendlyscience.com>

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Package mldr.datasets updated to version 0.4.0 with previous version 0.3.15 dated 2016-01-16

Title: R Ultimate Multilabel Dataset Repository
Description: Large collection of multilabel datasets along with the functions needed to export them to several formats, to make partitions, and to obtain bibliographic information.
Author: David Charte [cre], Francisco Charte [aut]
Maintainer: David Charte <fdavidcl@outlook.com>

Diff between mldr.datasets versions 0.3.15 dated 2016-01-16 and 0.4.0 dated 2017-11-17

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More information about mldr.datasets at CRAN
Permanent link

New package sparkavro with initial version 0.1.0
Package: sparkavro
Type: Package
Title: Load Avro File into 'Apache Spark'
Version: 0.1.0
Author: Aki Ariga
Maintainer: Aki Ariga <chezou@gmail.com>
Description: Load Avro Files into 'Apache Spark' using 'sparklyr'. This allows to read files from 'Apache Avro' <https://avro.apache.org/>.
License: Apache License 2.0 | file LICENSE
BugReports: https://github.com/chezou/sparkavro
Encoding: UTF-8
LazyData: true
Imports: sparklyr, dplyr, DBI
RoxygenNote: 6.0.1
Suggests: testthat
NeedsCompilation: no
Packaged: 2017-11-17 13:53:06 UTC; aki
Repository: CRAN
Date/Publication: 2017-11-17 14:45:51 UTC

More information about sparkavro at CRAN
Permanent link

Package ProjectionBasedClustering updated to version 1.0.5 with previous version 1.0.4 dated 2017-08-21

Title: Projection Based Clustering
Description: A clustering approach for every projection method based on the generalized U*-matrix visualization of a topographic map is made available here [Thrun/Ultsch,2017] <DOI:10.13140/RG.2.2.13124.53124>. The number of clusters and the cluster structure can be estimated by counting the valleys in a topographic map. If the number of clusters and the clustering method are chosen correctly, then the clusters will be well separated by mountains in the visualization. Most projection methods are wrappers for already available methods in R. However, the neighbor retrieval visualizer (NeRV) is based on C++ source code of the 'dredviz' software package and the Curvilinear Component Analysis (CCA) is translated from 'MATLAB' ('SOM Toolbox' 2.0) to R.
Author: Michael Thrun [aut, cre], Florian Lerch [aut], Felix Pape [aut], Kristian Nybo [cph], Jarkko Venna [cph]
Maintainer: Michael Thrun <m.thrun@gmx.net>

Diff between ProjectionBasedClustering versions 1.0.4 dated 2017-08-21 and 1.0.5 dated 2017-11-17

 DESCRIPTION              |    8 ++++----
 MD5                      |   11 ++++++-----
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 7 files changed, 24 insertions(+), 23 deletions(-)

More information about ProjectionBasedClustering at CRAN
Permanent link

Package mpmcorrelogram updated to version 0.1-4 with previous version 0.1-3 dated 2013-03-13

Title: Multivariate Partial Mantel Correlogram
Description: Functions to compute and plot multivariate (partial) Mantel correlograms.
Author: Marcelino de la Cruz
Maintainer: Marcelino de la Cruz <marcelino.delacruz@urjc.es>

Diff between mpmcorrelogram versions 0.1-3 dated 2013-03-13 and 0.1-4 dated 2017-11-17

 DESCRIPTION        |   13 ++++++-------
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 NAMESPACE          |    2 +-
 R/mpmcorrelogram.R |    2 +-
 4 files changed, 11 insertions(+), 12 deletions(-)

More information about mpmcorrelogram at CRAN
Permanent link

New package xpose with initial version 0.4.0
Package: xpose
Type: Package
Title: Diagnostics for Pharmacometric Models
Version: 0.4.0
Authors@R: c( person('Benjamin', 'Guiastrennec', role = c('aut', 'cre', 'cph'), email = 'guiastrennec@gmail.com'), person('Andrew C.', 'Hooker', role = c('aut', 'cph'), email = 'andrew.hooker@farmbio.uu.se'), person('Anna', 'Olofsson', role = c('aut', 'cph'), email = 'anna.olofsson@pharmetheus.com'), person('Sebastian', 'Ueckert', role = c('aut', 'cph'), email = 'sebastian.ueckert@farmbio.uu.se'), person('Ron', 'Keizer', role = 'aut', email = 'ronkeizer@gmail.com'), person('Nick', 'Solomon', role = 'ctb', comment = 'Wrote the geom_qq_line function', email = 'nick@nicksolomon.me'), person('Kajsa', 'Harling', role = 'ctb', email = 'kajsa.harling@pharmetheus.com'), person('Mike K.', 'Smith', role = 'ctb', email = 'mike.k.smith@pfizer.com'), person('Elodie', 'Plan', role = 'ctb', email = 'elodie.plan@pharmetheus.com'), person('Mats O.', 'Karlsson', role = c('aut', 'cph'), email = 'mats.karlsson@farmbio.uu.se'), person('Pharmetheus', role = 'ctb', email = 'info@pharmetheus.com'), person('Pfizer', role = 'ctb'))
Description: Diagnostics for non-linear mixed-effects (population) models from 'NONMEM' <http://www.iconplc.com/innovation/nonmem/>. 'xpose' facilitates data import, creation of numerical run summary and provide 'ggplot2'-based graphics for data exploration and model diagnostics.
Depends: R (>= 3.1.2), ggplot2 (>= 2.2.1)
Imports: dplyr (>= 0.7.0), ggforce, grDevices, gridExtra, purrr (>= 0.2.0), readr, rlang (>= 0.1.2), stringr, tibble (>= 1.3.1), tidyr (>= 0.6), utils, stats, vpc (>= 1.0.0)
Suggests: rmarkdown, knitr, testthat, plotly, webshot, mvtnorm
License: LGPL-3
URL: https://github.com/UUPharmacometrics/xpose
BugReports: https://github.com/UUPharmacometrics/xpose/issues
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-11-14 14:55:53 UTC; bengu839
Author: Benjamin Guiastrennec [aut, cre, cph], Andrew C. Hooker [aut, cph], Anna Olofsson [aut, cph], Sebastian Ueckert [aut, cph], Ron Keizer [aut], Nick Solomon [ctb] (Wrote the geom_qq_line function), Kajsa Harling [ctb], Mike K. Smith [ctb], Elodie Plan [ctb], Mats O. Karlsson [aut, cph], Pharmetheus [ctb], Pfizer [ctb]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>
Repository: CRAN
Date/Publication: 2017-11-17 12:33:43 UTC

More information about xpose at CRAN
Permanent link

Package timeSeries updated to version 3042.102 with previous version 3022.101.2 dated 2015-12-14

Title: Rmetrics - Financial Time Series Objects
Description: Provides a class and various tools for financial time series. This includes basic functions such as scaling and sorting, subsetting, mathematical operations and statistical functions.
Author: Diethelm Wuertz [aut], Tobias Setz [cre], Yohan Chalabi [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>

Diff between timeSeries versions 3022.101.2 dated 2015-12-14 and 3042.102 dated 2017-11-17

 DESCRIPTION                 |   22 -
 MD5                         |   20 -
 NAMESPACE                   |    1 
 R/base-sort.R               |  111 +++----
 R/methods-is.R              |  177 ++++++-----
 R/methods-mathOps.R         |  411 ++++++++++++---------------
 R/methods-plot.R            |  462 +++++++++++++++---------------
 R/methods-plot2.R           |  666 +++++++++++++++++++++++---------------------
 build/vignette.rds          |binary
 inst/doc/timeSeriesPlot.pdf |binary
 man/methods-mathOps.Rd      |  303 +++++++++-----------
 11 files changed, 1093 insertions(+), 1080 deletions(-)

More information about timeSeries at CRAN
Permanent link

Package stringi updated to version 1.1.6 with previous version 1.1.5 dated 2017-04-07

Title: Character String Processing Facilities
Description: Allows for fast, correct, consistent, portable, as well as convenient character string/text processing in every locale and any native encoding. Owing to the use of the ICU library, the package provides R users with platform-independent functions known to Java, Perl, Python, PHP, and Ruby programmers. Available features include: pattern searching (e.g., with ICU Java-like regular expressions or the Unicode Collation Algorithm), random string generation, case mapping, string transliteration, concatenation, Unicode normalization, date-time formatting and parsing, etc.
Author: Marek Gagolewski [aut, cre], Bartek Tartanus [ctb], and other contributors (stringi source code); IBM and other contributors (ICU4C 55.1 source code); Unicode, Inc. (Unicode Character Database)
Maintainer: Marek Gagolewski <gagolews@rexamine.com>

Diff between stringi versions 1.1.5 dated 2017-04-07 and 1.1.6 dated 2017-11-17

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 src/stri_brkiter.cpp                   |   53 +++++---
 src/stri_brkiter.h                     |   38 ++++--
 src/stri_collator.cpp                  |    5 
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 39 files changed, 438 insertions(+), 138 deletions(-)

More information about stringi at CRAN
Permanent link

New package spMaps with initial version 0.1
Package: spMaps
Type: Package
Title: Europe SpatialPolygonsDataFrame Builder
Version: 0.1
Date: 2017-11-15
Authors@R: c( person("Jalal-Edine", "ZAWAM", email = "jalal-edine.zawam@rte-france.com", role = c("aut", "cre")), person("Benoit", "Thieurmel", email = "benoit.thieurmel@datastorm.fr", role = "aut"), person("RTE", role = "cph") )
Maintainer: Jalal-Edine ZAWAM <jalal-edine.zawam@rte-france.com>
Description: Build custom Europe SpatialPolygonsDataFrame, if you don't know what is a SpatialPolygonsDataFrame see SpatialPolygons() in 'sp', by example for mapLayout() in 'antaresViz'. Antares is a powerful software developed by RTE to simulate and study electric power systems (more information about 'Antares' here: <https://antares.rte-france.com>).
URL: https://github.com/rte-antares-rpackage/antaresMaps
BugReports: https://github.com/rte-antares-rpackage/antaresMaps/issues
License: GPL (>= 2) | file LICENSE
LazyData: TRUE
Encoding: UTF-8
Depends: R (>= 2.10), sp
RoxygenNote: 6.0.1
Suggests: testthat, covr
NeedsCompilation: no
Packaged: 2017-11-16 07:47:02 UTC; jalazawa
Author: Jalal-Edine ZAWAM [aut, cre], Benoit Thieurmel [aut], RTE [cph]
Repository: CRAN
Date/Publication: 2017-11-17 12:38:17 UTC

More information about spMaps at CRAN
Permanent link

Package spiderbar updated to version 0.2.1 with previous version 0.2.0 dated 2017-09-25

Title: Parse and Test Robots Exclusion Protocol Files and Rules
Description: The 'Robots Exclusion Protocol' <http://www.robotstxt.org/orig.html> documents a set of standards for allowing or excluding robot/spider crawling of different areas of site content. Tools are provided which wrap The 'rep-cpp' <https://github.com/seomoz/rep-cpp> C++ library for processing these 'robots.txt' files.
Author: Bob Rudis (bob@rud.is) [aut, cre], SEOmoz, Inc [aut]
Maintainer: Bob Rudis <bob@rud.is>

Diff between spiderbar versions 0.2.0 dated 2017-09-25 and 0.2.1 dated 2017-11-17

 DESCRIPTION                     |    8 ++++----
 MD5                             |    4 ++--
 tests/testthat/test-spiderbar.R |    2 +-
 3 files changed, 7 insertions(+), 7 deletions(-)

More information about spiderbar at CRAN
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Package RNeXML updated to version 2.0.8 with previous version 2.0.7 dated 2016-06-28

Title: Semantically Rich I/O for the 'NeXML' Format
Description: Provides access to phyloinformatic data in 'NeXML' format. The package should add new functionality to R such as the possibility to manipulate 'NeXML' objects in more various and refined way and compatibility with 'ape' objects.
Author: Carl Boettiger [cre, aut] (0000-0002-1642-628X), Scott Chamberlain [aut] (0000-0003-1444-9135), Hilmar Lapp [aut] (0000-0001-9107-0714), Kseniia Shumelchyk [aut], Rutger Vos [aut] (0000-0001-9254-7318)
Maintainer: Carl Boettiger <cboettig@gmail.com>

Diff between RNeXML versions 2.0.7 dated 2016-06-28 and 2.0.8 dated 2017-11-17

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 MD5                               |  106 +-
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 tests/testthat/test_concatenate.R |   16 
 tests/testthat/test_zzz_cleanup.R |only
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 55 files changed, 1746 insertions(+), 357 deletions(-)

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Permanent link

Package Rfast updated to version 1.8.6 with previous version 1.8.5 dated 2017-11-13

Title: A Collection of Efficient and Extremely Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), are some of the many fast functions.
Author: Manos Papadakis, Michail Tsagris, Marios Dimitriadis, Stefanos Fafalios, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis, John Burkardt, Changliang Zou and Kleanthi Lakiotaki
Maintainer: Manos Papadakis <papadakm95@gmail.com>

Diff between Rfast versions 1.8.5 dated 2017-11-13 and 1.8.6 dated 2017-11-17

 Rfast-1.8.5/Rfast/src/kron.cpp              |only
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 Rfast-1.8.6/Rfast/man/sort_unique.Rd        |    5 --
 Rfast-1.8.6/Rfast/man/weib.reg.Rd           |   10 +---
 Rfast-1.8.6/Rfast/src/Round.cpp             |   28 +++++++++--
 Rfast-1.8.6/Rfast/src/Sort.cpp              |   11 ++--
 Rfast-1.8.6/Rfast/src/cholesky.cpp          |    2 
 Rfast-1.8.6/Rfast/src/col_row_meds.cpp      |    2 
 Rfast-1.8.6/Rfast/src/count_value.cpp       |    2 
 Rfast-1.8.6/Rfast/src/frame_to_matrix.cpp   |   14 +++--
 Rfast-1.8.6/Rfast/src/group_sum.cpp         |    8 +--
 Rfast-1.8.6/Rfast/src/init.c                |   10 +---
 Rfast-1.8.6/Rfast/src/mn.cpp                |   46 ++++++------------
 Rfast-1.8.6/Rfast/src/mn.h                  |   11 +---
 Rfast-1.8.6/Rfast/src/partial_sort.cpp      |    8 +--
 Rfast-1.8.6/Rfast/src/reg_lib.cpp           |   16 +-----
 Rfast-1.8.6/Rfast/src/sort_mat.cpp          |   12 +++-
 Rfast-1.8.6/Rfast/src/sort_mat_p.cpp        |    6 +-
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 Rfast-1.8.6/Rfast/src/sort_mat_stable_p.cpp |    6 +-
 Rfast-1.8.6/Rfast/src/sort_unique.cpp       |    5 --
 Rfast-1.8.6/Rfast/src/stable_sort.cpp       |   10 ----
 Rfast-1.8.6/Rfast/src/which_isFactor.cpp    |    4 -
 36 files changed, 253 insertions(+), 226 deletions(-)

More information about Rfast at CRAN
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Package googleCloudStorageR updated to version 0.4.0 with previous version 0.3.0 dated 2017-05-27

Title: Interface with Google Cloud Storage API
Description: Interact with Google Cloud Storage <https://cloud.google.com/storage/> API in R. Part of the 'cloudyr' <https://cloudyr.github.io/> project.
Author: Mark Edmondson [aut, cre] (0000-0002-8434-3881)
Maintainer: Mark Edmondson <r@sunholo.com>

Diff between googleCloudStorageR versions 0.3.0 dated 2017-05-27 and 0.4.0 dated 2017-11-17

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 googleCloudStorageR-0.4.0/googleCloudStorageR/NAMESPACE                         |   33 ++
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More information about googleCloudStorageR at CRAN
Permanent link

New package available with initial version 1.0.0
Package: available
Title: Check if the Title of a Package is Available, Appropriate and Interesting
Version: 1.0.0
Authors@R: c( person("Carl", "Ganz", role = c("aut")), person("Gábor", "Csárdi", , "csardi.gabor@gmail.com", role = c("aut")), person("Jim", "Hester", email = "james.f.hester@gmail.com", role = c("aut", "cre")), person("Molly", "Lewis", role = c("aut")), person("Rachael", "Tatman", role = c("aut")) )
Description: Check if a given package name is available to use. It checks the name's validity. Checks if it is used on 'GitHub', 'CRAN' and 'Bioconductor'. Checks for unintended meanings by querying Urban Dictionary, 'Wiktionary' and Wikipedia.
Depends: R (>= 3.1.0)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Imports: cli, clisymbols, crayon, tidytext, desc, glue, jsonlite, memoise, purrr, SnowballC, stringdist, tibble, udapi, yesno
Suggests: devtools, BiocInstaller, testthat
URL: https://github.com/ropenscilabs/available
BugReports: https://github.com/ropenscilabs/available/issues
NeedsCompilation: no
Packaged: 2017-11-14 15:32:46 UTC; jhester
Author: Carl Ganz [aut], Gábor Csárdi [aut], Jim Hester [aut, cre], Molly Lewis [aut], Rachael Tatman [aut]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Repository: CRAN
Date/Publication: 2017-11-17 12:35:17 UTC

More information about available at CRAN
Permanent link

Package survminer updated to version 0.4.1 with previous version 0.4.0 dated 2017-06-07

Title: Drawing Survival Curves using 'ggplot2'
Description: Contains the function 'ggsurvplot()' for drawing easily beautiful and 'ready-to-publish' survival curves with the 'number at risk' table and 'censoring count plot'. Other functions are also available to plot adjusted curves for `Cox` model and to visually examine 'Cox' model assumptions.
Author: Alboukadel Kassambara [aut, cre], Marcin Kosinski [aut], Przemyslaw Biecek [ctb], Scheipl Fabian [ctb]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>

Diff between survminer versions 0.4.0 dated 2017-06-07 and 0.4.1 dated 2017-11-17

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 survminer-0.4.1/survminer/NAMESPACE                                                 |    6 
 survminer-0.4.1/survminer/NEWS.md                                                   |   28 +
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 survminer-0.4.1/survminer/R/ggforest.R                                              |  160 ++++++----
 survminer-0.4.1/survminer/R/ggsurvplot.R                                            |    7 
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 survminer-0.4.1/survminer/R/ggsurvtable.R                                           |   14 
 survminer-0.4.1/survminer/R/utilities.R                                             |    2 
 survminer-0.4.1/survminer/README.md                                                 |    8 
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 27 files changed, 293 insertions(+), 177 deletions(-)

More information about survminer at CRAN
Permanent link

New package proPubBills with initial version 0.1
Package: proPubBills
Version: 0.1
Date: 2017-11-15
Title: 'ProPublica' U.S. Congress Bills API Wrapper
Description: An API wrapper around the 'ProPublica' API <https://projects.propublica.org/api-docs/congress-api/> for U.S. Congressional Bills. Users can include their API key, U.S. Congress, branch, and offset ranges, to return a dataframe of all results within those parameters. This package is different from the 'RPublica' package because it is for the 'ProPublica' U.S. Congress data API, and the 'RPublica' package is for the Nonprofit Explorer, Forensics, and Free the Files data APIs.
Imports: httr, dplyr, stringr
Author: Nadine Fischoff <nadine.khattak@gmail.com>
Maintainer: Nadine Fischoff <nadine.khattak@gmail.com>
License: MIT + file LICENSE
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 6.0.1.9000
NeedsCompilation: no
Packaged: 2017-11-17 12:08:16 UTC; nadinekhattak
Repository: CRAN
Date/Publication: 2017-11-17 12:26:11 UTC

More information about proPubBills at CRAN
Permanent link

New package logihist with initial version 1.0
Package: logihist
Type: Package
Title: Combined Graphs for Logistic Regression
Version: 1.0
Date: 2017-11-16
Author: Marcelino de la Cruz
Depends: ggplot2
Suggests: popbio
Maintainer: Marcelino de la Cruz <marcelino.delacruz@urjc.es>
Description: Provides histograms, boxplots and dotplots as alternatives to scatterplots of data when plotting fitted logistic regressions.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2017-11-16 20:29:41 UTC; marcelino
Repository: CRAN
Date/Publication: 2017-11-17 12:05:51 UTC

More information about logihist at CRAN
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Package fBasics updated to version 3042.89 with previous version 3011.87 dated 2014-10-29

Title: Rmetrics - Markets and Basic Statistics
Description: Provides a collection of functions to explore and to investigate basic properties of financial returns and related quantities. The covered fields include techniques of explorative data analysis and the investigation of distributional properties, including parameter estimation and hypothesis testing. Even more there are several utility functions for data handling and management.
Author: Diethelm Wuertz [aut], Tobias Setz [cre], Yohan Chalabi [ctb] Martin Maechler [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>

Diff between fBasics versions 3011.87 dated 2014-10-29 and 3042.89 dated 2017-11-17

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New package fAsianOptions with initial version 3042.82
Package: fAsianOptions
Title: Rmetrics - EBM and Asian Option Valuation
Date: 2017-11-12
Version: 3042.82
Author: Diethelm Wuertz [aut], Tobias Setz [cre]
Maintainer: Tobias Setz <tobias.setz@live.com>
Description: Provides functions for pricing and valuating Asian Options together with tools for analyzing and modeling Exponential Brownian Motion (EBM).
Depends: R (>= 2.15.1), timeDate, timeSeries, fBasics, fOptions
Imports: stats
Suggests: methods, RUnit
LazyData: yes
License: GPL (>= 2)
URL: http://www.rmetrics.org
NeedsCompilation: yes
Packaged: 2017-11-17 07:23:59 UTC; Tobias Setz
Repository: CRAN
Date/Publication: 2017-11-17 12:09:14 UTC

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Package covatest updated to version 0.3.0 with previous version 0.2.1 dated 2017-04-27

Title: Tests on Properties of Space-Time Covariance Functions
Description: Tests on properties of space-time covariance functions. Tests on symmetry, separability and for assessing different forms of non-separability are available. Moreover tests on some classes of covariance functions, such that the classes of product-sum models, Gneiting models and integrated product models have been provided.
Author: Sandra De Iaco [aut, cre], Claudia Cappello [aut], Donato Posa [aut], Sabrina Maggio [ctb]
Maintainer: Sandra De Iaco <sandra.deiaco@unisalento.it>

Diff between covatest versions 0.2.1 dated 2017-04-27 and 0.3.0 dated 2017-11-17

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New package ArchaeoChron with initial version 0.1
Package: ArchaeoChron
Type: Package
Title: Bayesian Modeling of Archaeological Chronologies
Version: 0.1
Date: 2017-11-16
Author: Anne Philippe [aut, cre], Marie-Anne Vibet [aut]
Authors@R: c( person("Anne", "Philippe", role = c("aut", "cre"), email = "anne.philippe@univ-nantes.fr"), person("Marie-Anne", "Vibet", role = c("aut")) )
Maintainer: Anne Philippe <anne.philippe@univ-nantes.fr>
Description: Provides a list of functions for the Bayesian modeling of archaeological chronologies. The Bayesian models are implemented in 'JAGS' ('JAGS' stands for Just Another Gibbs Sampler. It is a program for the analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. See <http://mcmc-jags.sourceforge.net/> and "JAGS Version 4.3.0 user manual", Martin Plummer (2017) <https://sourceforge.net/projects/mcmc-jags/files/Manuals/>.). The inputs are measurements with their associated standard deviations and the study period. The output is the MCMC sample of the posterior distribution of the event date with or without radiocarbon calibration.
License: GPL-3
Depends: R (>= 2.10), coda, rjags, ArchaeoPhases
Imports: stats, utils, graphics, grDevices, Bchron
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-11-17 09:20:44 UTC; vibet
Repository: CRAN
Date/Publication: 2017-11-17 12:15:57 UTC

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New package RHawkes with initial version 0.0
Package: RHawkes
Type: Package
Title: Renewal Hawkes Process
Version: 0.0
Date: 2017-11-16
Author: Feng Chen <feng.chen@unsw.edu.au> Thomas Stindl <t.stindl@unsw.edu.au>
Maintainer: Feng Chen <feng.chen@unsw.edu.au>
Description: Simulate a renewal Hawkes (RHawkes) self-exciting process, with a given immigrant hazard rate function and offspring density function. Calculate the likelihood of a RHawkes process with given hazard rate function and offspring density function for an (increasing) sequence of event times. Calculate the Rosenblatt residuals of the event times. Predict future event times based on observed event times up to a given time. For details see Chen and Stindl (2017) <doi:10.1080/10618600.2017.1341324>.
License: GPL (>= 2)
Depends: R (>= 2.10), IHSEP
NeedsCompilation: no
Packaged: 2017-11-17 02:05:35 UTC; z3243864
Repository: CRAN
Date/Publication: 2017-11-17 11:48:19 UTC

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Package ensembleMOS updated to version 0.8.1 with previous version 0.8 dated 2017-08-08

Title: Ensemble Model Output Statistics
Description: Ensemble Model Output Statistics to create probabilistic forecasts from ensemble forecasts and weather observations.
Author: RA Yuen, Sandor Baran, Chris Fraley, Tilmann Gneiting, Sebastian Lerch, Michael Scheuerer, Thordis Thorarinsdottir
Maintainer: Sandor Baran <baran.sandor@inf.unideb.hu>

Diff between ensembleMOS versions 0.8 dated 2017-08-08 and 0.8.1 dated 2017-11-17

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Package tsBSS updated to version 0.4 with previous version 0.3.1 dated 2017-08-18

Title: Blind Source Separation and Supervised Dimension Reduction for Time Series
Description: Different estimates are provided to solve the blind source separation problem for multivariate time series with stochastic volatility (Matilainen, Nordhausen and Oja (2015) <doi:10.1016/j.spl.2015.04.033>); Matilainen, Miettinen, Nordhausen, Oja and Taskinen (2017) <doi:10.17713/ajs.v46i3-4.671>) and supervised dimension reduction problem for multivariate time series (Matilainen, Croux, Nordhausen and Oja (2017) <doi:10.1016/j.ecosta.2017.04.002>).
Author: Markus Matilainen, Christophe Croux, Jari Miettinen, Klaus Nordhausen, Hannu Oja, Sara Taskinen
Maintainer: Markus Matilainen <markus.matilainen@outlook.com>

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Package revgeo updated to version 0.15 with previous version 0.11 dated 2017-05-03

Title: Reverse Geocoding with the Photon Geocoder for OpenStreetMap, Google Maps, and Bing
Description: Function revgeo() allows you to use the Photon geocoder for OpenStreetMap <http://photon.komoot.de>, Google Maps <http://maps.google.com>, and Bing <https://www.bingmapsportal.com> to reverse geocode coordinate pairs with minimal hassle.
Author: Michael Hudecheck [aut, cre]
Maintainer: Michael Hudecheck <michael.hudecheck@gess.ethz.ch>

Diff between revgeo versions 0.11 dated 2017-05-03 and 0.15 dated 2017-11-17

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Package Relatedness updated to version 2.0 with previous version 1.4 dated 2016-06-03

Title: Maximum Likelihood Estimation of Relatedness using EM Algorithm
Description: Inference of relatedness coefficients from a bi-allelic genotype matrix using a Maximum Likelihood estimation, Laporte, F., Charcosset, A. and Mary-Huard, T. (2017) <doi:10.1111/biom.12634>.
Author: Fabien Laporte, Tristan Mary-Huard
Maintainer: Fabien Laporte <fabien.laporte@inra.fr>

Diff between Relatedness versions 1.4 dated 2016-06-03 and 2.0 dated 2017-11-17

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Package protViz updated to version 0.2.45 with previous version 0.2.37 dated 2017-10-12

Title: Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
Description: Helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.
Author: Christian Panse [aut, cre] (0000-0003-1975-3064), Jonas Grossmann [aut] (0000-0002-6899-9020), Simon Barkow-Oesterreicher [ctb]
Maintainer: Christian Panse <cp@fgcz.ethz.ch>

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New package nmfem with initial version 1.0.0
Package: nmfem
Type: Package
Title: NMF-EM Algorithm
Version: 1.0.0
Authors@R: person("Lena", "Carel", email = "lena.carel@gmail.com", role = c("aut", "cre"))
Depends: R(>= 2.10.0)
Description: Provides a version of the Expectation-Maximization algorithm for mix-models, reducing the numbers of parameters to estimate using Non-negative Matrix Factorization methods. For more explanations, see pre-print of Carel and Alquier (2017) <arXiv:1709.03346>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: plyr, dplyr, d3heatmap, mixtools, tidyr
RoxygenNote: 6.0.1
Suggests: knitr, testthat, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-11-16 15:37:09 UTC; lena.carel
Author: Lena Carel [aut, cre]
Maintainer: Lena Carel <lena.carel@gmail.com>
Repository: CRAN
Date/Publication: 2017-11-17 10:03:52 UTC

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Package KnowBR updated to version 1.5 with previous version 1.3 dated 2017-09-22

Title: Discriminating Well Surveyed Spatial Units from Exhaustive Biodiversity Databases
Description: It uses species accumulation curves and diverse estimators to assess, at the same time, the levels of survey coverage in multiple geographic cells of a size defined by the user or polygons. It also enables the geographical depiction of observed species richness, survey effort and completeness values including a background with administrative areas.
Author: Cstor Guisande Gonzlez and Jorge M. Lobo
Maintainer: Cstor Guisande Gonzlez <castor@uvigo.es>

Diff between KnowBR versions 1.3 dated 2017-09-22 and 1.5 dated 2017-11-17

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Package GJRM updated to version 0.1-3 with previous version 0.1-2 dated 2017-09-22

Title: Generalised Joint Regression Modelling
Description: Routines for fitting various joint regression models, with several types of covariate effects, in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>

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Package extremefit updated to version 0.2.3 with previous version 0.2.2 dated 2017-03-21

Title: Estimation of Extreme Conditional Quantiles and Probabilities
Description: Extreme value theory, nonparametric kernel estimation, tail conditional probabilities, extreme conditional quantile, adaptive estimation, quantile regression, survival probabilities.
Author: Gilles Durrieu, Ion Grama, Kevin Jaunatre, Quang-Khoai Pham, Jean-Marie Tricot
Maintainer: Kevin Jaunatre <kevin.jaunatre@univ-ubs.fr>

Diff between extremefit versions 0.2.2 dated 2017-03-21 and 0.2.3 dated 2017-11-17

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Permanent link

Package sppmix updated to version 1.0.2 with previous version 1.0.1 dated 2017-03-31

Title: Modeling Spatial Poisson and Related Point Processes
Description: Implements classes and methods for modeling spatial point patterns using inhomogeneous Poisson point processes, where the intensity surface is assumed to be analogous to a finite additive mixture of normal components and the number of components is a finite, fixed or random integer. Extensions to the marked inhomogeneous Poisson point processes case are also presented. We provide an extensive suite of R functions that can be used to simulate, visualize and model point patterns, estimate the parameters of the models, assess convergence of the algorithms and perform model selection and checking in the proposed modeling context.
Author: Jiaxun Chen <chenjiaxun9@hotmail.com> and Athanasios (Sakis) Christou Micheas <micheasa@missouri.edu>. Significant contributions on the package skeleton creation, plotting functions and other code by Yuchen Wang <ycwang0712@gmail.com>
Maintainer: Sakis Micheas <micheasa@missouri.edu>

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Permanent link

New package ggfittext with initial version 0.5.0
Package: ggfittext
Title: Fit Text Inside a Box in 'ggplot2'
Version: 0.5.0
Authors@R: person("David", "Wilkins", email = "david@wilkox.org", role = c("aut", "cre"))
Description: Provides 'ggplot2' geoms to fit text into a box by growing, shrinking or wrapping the text.
Depends: R (>= 3.1)
License: GPL-2
LazyData: true
Imports: grid (>= 3.1), stringi (>= 1.1.2), ggplot2 (>= 2.2.1)
RoxygenNote: 6.0.1
URL: https://github.com/wilkox/ggfittext
BugReports: https://github.com/wilkox/ggfittext/issues
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-11-17 00:07:05 UTC; wilkox
Author: David Wilkins [aut, cre]
Maintainer: David Wilkins <david@wilkox.org>
Repository: CRAN
Date/Publication: 2017-11-17 08:35:45 UTC

More information about ggfittext at CRAN
Permanent link

Package GAS updated to version 0.2.5 with previous version 0.2.4 dated 2017-07-23

Title: Generalized Autoregressive Score Models
Description: Simulate, estimate and forecast using univariate and multivariate GAS models as described in Ardia et al. (2016) <https://ssrn.com/abstract=2825380>.
Author: Leopoldo Catania [aut,cre], Kris Boudt [ctb], David Ardia [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@econ.au.dk>

Diff between GAS versions 0.2.4 dated 2017-07-23 and 0.2.5 dated 2017-11-17

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Package fExtremes updated to version 3042.82 with previous version 3010.81 dated 2013-12-17

Title: Rmetrics - Modelling Extreme Events in Finance
Description: Provides functions for analysing and modelling extreme events in financial time Series. The topics include: (i) data pre-processing, (ii) explorative data analysis, (iii) peak over threshold modelling, (iv) block maxima modelling, (v) estimation of VaR and CVaR, and (vi) the computation of the extreme index.
Author: Diethelm Wuertz [aut], Tobias Setz [cre], Yohan Chalabi [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>

Diff between fExtremes versions 3010.81 dated 2013-12-17 and 3042.82 dated 2017-11-17

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Package fExoticOptions updated to version 3042.80 with previous version 2152.78 dated 2012-11-07

Title: Rmetrics - Pricing and Evaluating Exotic Option
Description: Provides a collection of functions to evaluate barrier options, Asian options, binary options, currency translated options, lookback options, multiple asset options and multiple exercise options.
Author: Diethelm Wuertz [aut], Tobias Setz [cre]
Maintainer: Tobias Setz <tobias.setz@live.com>

Diff between fExoticOptions versions 2152.78 dated 2012-11-07 and 3042.80 dated 2017-11-17

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Package bnspatial updated to version 1.0.3 with previous version 1.0.2 dated 2017-07-21

Title: Spatial Implementation of Bayesian Networks and Mapping
Description: Allows spatial implementation of Bayesian networks and mapping in geographical space. It makes maps of expected value (or most likely state) given known and unknown conditions, maps of uncertainty measured as coefficient of variation or Shannon index (entropy), maps of probability associated to any states of any node of the network. Some additional features are provided as well: parallel processing options, data discretization routines and function wrappers designed for users with minimal knowledge of the R language. Outputs can be exported to any common GIS format. Development was funded by the European Union FP7 (2007-2013), under project ROBIN (<http://robinproject.info>).
Author: Dario Masante [aut, cre]
Maintainer: Dario Masante <dario.masante@gmail.com>

Diff between bnspatial versions 1.0.2 dated 2017-07-21 and 1.0.3 dated 2017-11-17

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Package rmarkdown updated to version 1.8 with previous version 1.7 dated 2017-11-10

Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut], Yihui Xie [aut, cre] (0000-0003-0645-5666), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Jeff Allen [ctb], Roy Storey [ctb], Rob Hyndman [ctb], Ruben Arslan [ctb], RStudio, Inc. [cph], jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/rmd/h/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs)
Maintainer: Yihui Xie <xie@yihui.name>

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Package gamreg updated to version 0.3 with previous version 0.2 dated 2016-10-09

Title: Robust and Sparse Regression via Gamma-Divergence
Description: Robust regression via gamma-divergence with L1, elastic net and ridge.
Author: Takayuki Kawashima
Maintainer: Takayuki Kawashima <t-kawa@ism.ac.jp>

Diff between gamreg versions 0.2 dated 2016-10-09 and 0.3 dated 2017-11-17

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Package colorSpec updated to version 0.6-1 with previous version 0.5-3 dated 2016-05-16

Title: Color Calculations with Emphasis on Spectral Data
Description: Calculate with spectral properties of light sources, materials, cameras, eyes, and scanners. Build complex systems from simpler parts using a spectral product algebra. For light sources, compute CCT and CRI. For object colors, compute optimal colors and Logvinenko coordinates. Work with the standard CIE illuminants and color matching functions, and read spectra from text files, including CGATS files. A user guide and 5 vignettes are included.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>

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 colorSpec-0.6-1/colorSpec/man/bind.Rd                                        |    9 
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 colorSpec-0.6-1/colorSpec/man/plotPatchesRGB.Rd                              |    2 
 colorSpec-0.6-1/colorSpec/man/product.Rd                                     |    2 
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 colorSpec-0.6-1/colorSpec/man/readSpectra.Rd                                 |   61 +
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 colorSpec-0.6-1/colorSpec/tests/test-product.R                               |    6 
 colorSpec-0.6-1/colorSpec/tests/test-read.R                                  |   12 
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 62 files changed, 688 insertions(+), 450 deletions(-)

More information about colorSpec at CRAN
Permanent link

Package ggfittext (with last version 0.4.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-08-21 0.4.3

Permanent link
Package queuecomputer updated to version 0.8.2 with previous version 0.8.1 dated 2017-04-11

Title: Computationally Efficient Queue Simulation
Description: Implementation of a computationally efficient method for simulating queues with arbitrary arrival and service times.
Author: Anthony Ebert [aut, cre]
Maintainer: Anthony Ebert <anthonyebert+CRAN@gmail.com>

Diff between queuecomputer versions 0.8.1 dated 2017-04-11 and 0.8.2 dated 2017-11-17

 DESCRIPTION                     |    8 ++--
 MD5                             |   58 +++++++++++++++----------------
 NEWS.md                         |   11 +++++
 R/RcppExports.R                 |    4 +-
 R/core_queuefunctions.R         |    4 +-
 R/dplyr_plugins.R               |   63 ++++++++++++++--------------------
 R/post_analysis.R               |    9 ++++
 R/utils.R                       |   35 ++++++++++--------
 README.md                       |   13 +++----
 build/vignette.rds              |binary
 inst/doc/Howto.html             |   48 ++++++++++++-------------
 inst/doc/MMk_queues.html        |   74 ++++++++++++++++++++--------------------
 man/as.server.list.Rd           |    1 
 man/as.server.stepfun.Rd        |    1 
 man/average_queue.Rd            |    1 
 man/create_batches.Rd           |    1 
 man/depart.Rd                   |    1 
 man/lag_step.Rd                 |    1 
 man/plot.queue_list.Rd          |    1 
 man/print.queue_list.Rd         |    1 
 man/print.summary_queue_list.Rd |    1 
 man/ql_summary.Rd               |    1 
 man/queue.Rd                    |    1 
 man/queue_lengths.Rd            |    5 +-
 man/queue_step.Rd               |    1 
 man/summary.queue_list.Rd       |    1 
 man/wait_step.Rd                |    1 
 src/RcppExports.cpp             |    4 +-
 src/init.c                      |    8 ++--
 src/loops.cpp                   |    4 +-
 30 files changed, 180 insertions(+), 182 deletions(-)

More information about queuecomputer at CRAN
Permanent link


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