Title: A Modular Platform for Reproducible Modeling of Species Niches
and Distributions
Description: The 'shiny' application Wallace is a modular platform for reproducible modeling of species niches and distributions. Wallace guides users through a complete analysis, from the acquisition of species occurrence and environmental data to visualizing model predictions on an interactive map, thus bundling complex workflows into a single, streamlined interface.
Author: Jamie M. Kass [aut, cre],
Bruno Vilela [aut],
Matthew E. Aiello-Lammens [aut],
Robert Muscarella [aut],
Cory Merow [aut],
Robert P. Anderson [aut]
Maintainer: Jamie M. Kass <jkass@gradcenter.cuny.edu>
Diff between wallace versions 0.6.4 dated 2017-05-31 and 1.0 dated 2017-11-25
wallace-0.6.4/wallace/inst/Rmd/gtext_comp2_selectLocs.Rmd |only wallace-0.6.4/wallace/inst/shiny/modules/mods_comp1.R |only wallace-0.6.4/wallace/inst/shiny/modules/mods_comp2.R |only wallace-0.6.4/wallace/inst/shiny/modules/mods_comp3.R |only wallace-0.6.4/wallace/inst/shiny/modules/mods_comp4.R |only wallace-0.6.4/wallace/inst/shiny/modules/mods_comp5.R |only wallace-0.6.4/wallace/inst/shiny/modules/mods_comp6.R |only wallace-0.6.4/wallace/inst/shiny/modules/mods_comp7.R |only wallace-0.6.4/wallace/inst/shiny/modules/mods_comp8.R |only wallace-1.0/wallace/DESCRIPTION | 21 wallace-1.0/wallace/MD5 | 102 wallace-1.0/wallace/NEWS.md | 11 wallace-1.0/wallace/R/wallace-package.R | 9 wallace-1.0/wallace/README.md | 6 wallace-1.0/wallace/inst/Rmd/gtext_comp2.Rmd | 2 wallace-1.0/wallace/inst/Rmd/gtext_comp2_removeByID.Rmd |only wallace-1.0/wallace/inst/Rmd/gtext_comp2_selectOccsOnMap.Rmd |only wallace-1.0/wallace/inst/Rmd/gtext_comp3.Rmd | 4 wallace-1.0/wallace/inst/Rmd/gtext_comp3_userEnvs.Rmd |only wallace-1.0/wallace/inst/Rmd/gtext_comp3_worldclim.Rmd | 38 wallace-1.0/wallace/inst/Rmd/gtext_comp4.Rmd | 4 wallace-1.0/wallace/inst/Rmd/gtext_comp4_backg.Rmd | 2 wallace-1.0/wallace/inst/Rmd/gtext_comp4_userBg.Rmd |only wallace-1.0/wallace/inst/Rmd/gtext_comp6.Rmd | 4 wallace-1.0/wallace/inst/Rmd/gtext_comp6_maxent.Rmd | 10 wallace-1.0/wallace/inst/Rmd/gtext_comp7_map.Rmd | 8 wallace-1.0/wallace/inst/Rmd/gtext_comp7_respCurves.Rmd | 4 wallace-1.0/wallace/inst/Rmd/gtext_comp8_pjArea.Rmd | 2 wallace-1.0/wallace/inst/Rmd/gtext_comp8_pjTime.Rmd | 2 wallace-1.0/wallace/inst/Rmd/text_intro.Rmd | 61 wallace-1.0/wallace/inst/Rmd/text_intro_tab.Rmd | 8 wallace-1.0/wallace/inst/Rmd/text_sessionCode.Rmd | 9 wallace-1.0/wallace/inst/Rmd/userReport.Rmd | 470 +- wallace-1.0/wallace/inst/css/styles.css | 13 wallace-1.0/wallace/inst/shiny/funcs/functions.R | 440 +- wallace-1.0/wallace/inst/shiny/modules/mod_c1_queryDB.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c1_userOccs.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c2_removeByID.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c2_selectOccs.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c2_thinOccs.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c3_userEnvs.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c3_worldclim.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c4_bgExtent.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c4_bgMskSamplePts.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c4_userBgExtent.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c5_partitionNonSpat.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c5_partitionSpat.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c6_bioclim.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c6_maxent.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c7_bcPlots.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c7_mapPreds.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c7_mapPredsMaxent.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c7_mxEvalPlots.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c7_respPlots.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c8_envSimilarity.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c8_projectArea.R |only wallace-1.0/wallace/inst/shiny/modules/mod_c8_projectTime.R |only wallace-1.0/wallace/inst/shiny/modules/mod_threshPred.R |only wallace-1.0/wallace/inst/shiny/server.R | 1635 ++++------ wallace-1.0/wallace/inst/shiny/ui.R | 935 ++--- wallace-1.0/wallace/man/run_wallace.Rd | 1 wallace-1.0/wallace/man/wallace-package.Rd | 16 wallace-1.0/wallace/tests |only 63 files changed, 1950 insertions(+), 1867 deletions(-)
Title: Permutation p-Value Estimation for Gene Set Tests
Description: Code for various permutation p-values estimation methods for gene set test. The description of corresponding methods can be found in the dissertation of Yu He(2016) "Efficient permutation P-value estimation for gene set tests" <https://searchworks.stanford.edu/view/11849351>. One of the methods also corresponds to the paper "Permutation p-value approximation via generalized Stolarsky invariance" <arXiv:1603.02757>.
Author: Hera He <njheyu@gmail.com>
Maintainer: Hera He <njheyu@gmail.com>
Diff between pipeGS versions 0.2 dated 2017-08-06 and 0.3 dated 2017-11-25
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/saddlepoint.R | 12 ++++++++++-- 3 files changed, 16 insertions(+), 8 deletions(-)
Title: Read Untidy Excel Files
Description: Imports non-tabular from Excel files into R. Exposes cell content,
position and formatting in a tidy structure for further manipulation.
Tokenizes Excel formulas. Supports '.xlsx' and '.xlsm' via the embedded
'RapidXML' C++ library <http://rapidxml.sourceforge.net>. Does not support
'.xlsb' or '.xls'.
Author: Duncan Garmonsway [aut, cre],
Hadley Wickham [ctb] (Author of included readxl fragments),
RStudio [cph] (Copyright holder of included readxl fragments),
Marcin Kalicinski [ctb, cph] (Author of included RapidXML code)
Maintainer: Duncan Garmonsway <nacnudus@gmail.com>
Diff between tidyxl versions 0.2.3 dated 2017-07-08 and 1.0.0 dated 2017-11-25
tidyxl-0.2.3/tidyxl/src/styles.cpp |only tidyxl-0.2.3/tidyxl/src/styles.h |only tidyxl-0.2.3/tidyxl/src/utils.h |only tidyxl-0.2.3/tidyxl/tests/testthat/jmp-cell.xlsx |only tidyxl-0.2.3/tidyxl/tests/testthat/jmp-row.xlsx |only tidyxl-0.2.3/tidyxl/tests/testthat/libreoffice_bool.xlsx |only tidyxl-1.0.0/tidyxl/DESCRIPTION | 21 tidyxl-1.0.0/tidyxl/MD5 | 178 +- tidyxl-1.0.0/tidyxl/NAMESPACE | 11 tidyxl-1.0.0/tidyxl/NEWS.md | 86 + tidyxl-1.0.0/tidyxl/R/RcppExports.R | 32 tidyxl-1.0.0/tidyxl/R/data.R |only tidyxl-1.0.0/tidyxl/R/is_date_format.R |only tidyxl-1.0.0/tidyxl/R/is_range.R |only tidyxl-1.0.0/tidyxl/R/tidy_xlsx.R | 205 +- tidyxl-1.0.0/tidyxl/R/tidyxl-package.R | 15 tidyxl-1.0.0/tidyxl/R/utils.R | 37 tidyxl-1.0.0/tidyxl/R/xlex.R |only tidyxl-1.0.0/tidyxl/R/xlsx_cells.R |only tidyxl-1.0.0/tidyxl/R/xlsx_color_theme.R |only tidyxl-1.0.0/tidyxl/R/xlsx_formats.R |only tidyxl-1.0.0/tidyxl/R/xlsx_names.R |only tidyxl-1.0.0/tidyxl/R/xlsx_sheet_names.R |only tidyxl-1.0.0/tidyxl/R/xlsx_validation.R |only tidyxl-1.0.0/tidyxl/R/zip.R | 3 tidyxl-1.0.0/tidyxl/README.md | 522 +++++-- tidyxl-1.0.0/tidyxl/build/vignette.rds |binary tidyxl-1.0.0/tidyxl/data |only tidyxl-1.0.0/tidyxl/inst/doc/data-validation-rules.R |only tidyxl-1.0.0/tidyxl/inst/doc/data-validation-rules.Rmd |only tidyxl-1.0.0/tidyxl/inst/doc/data-validation-rules.html |only tidyxl-1.0.0/tidyxl/inst/doc/smells.R |only tidyxl-1.0.0/tidyxl/inst/doc/smells.Rmd |only tidyxl-1.0.0/tidyxl/inst/doc/smells.html |only tidyxl-1.0.0/tidyxl/inst/doc/tidyxl.R | 27 tidyxl-1.0.0/tidyxl/inst/doc/tidyxl.Rmd | 147 +- tidyxl-1.0.0/tidyxl/inst/doc/tidyxl.html | 685 +++++++--- tidyxl-1.0.0/tidyxl/inst/extdata/enron-constants.xlsx |only tidyxl-1.0.0/tidyxl/inst/extdata/enron-nested.xlsx |only tidyxl-1.0.0/tidyxl/inst/extdata/examples.xlsx |binary tidyxl-1.0.0/tidyxl/man/excel_functions.Rd |only tidyxl-1.0.0/tidyxl/man/is_date_format.Rd |only tidyxl-1.0.0/tidyxl/man/is_range.Rd |only tidyxl-1.0.0/tidyxl/man/tidy_xlsx.Rd | 223 +-- tidyxl-1.0.0/tidyxl/man/tidyxl.Rd |only tidyxl-1.0.0/tidyxl/man/xlex.Rd |only tidyxl-1.0.0/tidyxl/man/xlsx_cells.Rd |only tidyxl-1.0.0/tidyxl/man/xlsx_color_standard.Rd |only tidyxl-1.0.0/tidyxl/man/xlsx_color_theme.Rd |only tidyxl-1.0.0/tidyxl/man/xlsx_formats.Rd |only tidyxl-1.0.0/tidyxl/man/xlsx_names.Rd |only tidyxl-1.0.0/tidyxl/man/xlsx_sheet_names.Rd |only tidyxl-1.0.0/tidyxl/man/xlsx_validation.Rd |only tidyxl-1.0.0/tidyxl/src/RcppExports.cpp | 94 + tidyxl-1.0.0/tidyxl/src/border.cpp | 37 tidyxl-1.0.0/tidyxl/src/border.h | 29 tidyxl-1.0.0/tidyxl/src/color.cpp | 26 tidyxl-1.0.0/tidyxl/src/color.h | 14 tidyxl-1.0.0/tidyxl/src/date.h |only tidyxl-1.0.0/tidyxl/src/fill.cpp | 6 tidyxl-1.0.0/tidyxl/src/fill.h | 5 tidyxl-1.0.0/tidyxl/src/font.cpp | 55 tidyxl-1.0.0/tidyxl/src/font.h | 25 tidyxl-1.0.0/tidyxl/src/gradientFill.cpp | 63 tidyxl-1.0.0/tidyxl/src/gradientFill.h | 23 tidyxl-1.0.0/tidyxl/src/gradientStop.cpp |only tidyxl-1.0.0/tidyxl/src/gradientStop.h |only tidyxl-1.0.0/tidyxl/src/paren_type.h |only tidyxl-1.0.0/tidyxl/src/patternFill.cpp | 11 tidyxl-1.0.0/tidyxl/src/patternFill.h | 5 tidyxl-1.0.0/tidyxl/src/rapidxml.h | 420 +++--- tidyxl-1.0.0/tidyxl/src/rapidxml_print.h | 4 tidyxl-1.0.0/tidyxl/src/ref.cpp |only tidyxl-1.0.0/tidyxl/src/ref.h |only tidyxl-1.0.0/tidyxl/src/ref_grammar.h |only tidyxl-1.0.0/tidyxl/src/shared_formula.cpp |only tidyxl-1.0.0/tidyxl/src/shared_formula.h |only tidyxl-1.0.0/tidyxl/src/string.h |only tidyxl-1.0.0/tidyxl/src/stroke.cpp | 6 tidyxl-1.0.0/tidyxl/src/stroke.h | 5 tidyxl-1.0.0/tidyxl/src/tidyxl.cpp | 190 +- tidyxl-1.0.0/tidyxl/src/token_grammar.h |only tidyxl-1.0.0/tidyxl/src/xf.cpp | 100 - tidyxl-1.0.0/tidyxl/src/xf.h | 73 - tidyxl-1.0.0/tidyxl/src/xlex.cpp |only tidyxl-1.0.0/tidyxl/src/xlsxbook.cpp | 183 ++ tidyxl-1.0.0/tidyxl/src/xlsxbook.h | 58 tidyxl-1.0.0/tidyxl/src/xlsxcell.cpp | 145 +- tidyxl-1.0.0/tidyxl/src/xlsxcell.h | 27 tidyxl-1.0.0/tidyxl/src/xlsxnames.cpp |only tidyxl-1.0.0/tidyxl/src/xlsxnames.h |only tidyxl-1.0.0/tidyxl/src/xlsxsheet.cpp | 174 -- tidyxl-1.0.0/tidyxl/src/xlsxsheet.h | 47 tidyxl-1.0.0/tidyxl/src/xlsxstyles.cpp |only tidyxl-1.0.0/tidyxl/src/xlsxstyles.h |only tidyxl-1.0.0/tidyxl/src/xlsxvalidation.cpp |only tidyxl-1.0.0/tidyxl/src/xlsxvalidation.h |only tidyxl-1.0.0/tidyxl/src/zip.cpp | 2 tidyxl-1.0.0/tidyxl/tests/testthat/Ekaterinburg_IP_9.xlsx |only tidyxl-1.0.0/tidyxl/tests/testthat/default.xlsx |only tidyxl-1.0.0/tidyxl/tests/testthat/examples.xlsx |binary tidyxl-1.0.0/tidyxl/tests/testthat/formulas.xlsx |only tidyxl-1.0.0/tidyxl/tests/testthat/is_range.R |only tidyxl-1.0.0/tidyxl/tests/testthat/jmp.xlsx |only tidyxl-1.0.0/tidyxl/tests/testthat/libreoffice-bool.xlsx |only tidyxl-1.0.0/tidyxl/tests/testthat/lu-performance-data-almanac.xlsx |only tidyxl-1.0.0/tidyxl/tests/testthat/rainbow.xlsx |only tidyxl-1.0.0/tidyxl/tests/testthat/test-comments.R | 48 tidyxl-1.0.0/tidyxl/tests/testthat/test-compatibility.R | 27 tidyxl-1.0.0/tidyxl/tests/testthat/test-dates.R | 15 tidyxl-1.0.0/tidyxl/tests/testthat/test-formats.R |only tidyxl-1.0.0/tidyxl/tests/testthat/test-inline-strings.R | 2 tidyxl-1.0.0/tidyxl/tests/testthat/test-is_date_format.R |only tidyxl-1.0.0/tidyxl/tests/testthat/test-names.R |only tidyxl-1.0.0/tidyxl/tests/testthat/test-richtext.R | 14 tidyxl-1.0.0/tidyxl/tests/testthat/test-shared-formula.R |only tidyxl-1.0.0/tidyxl/tests/testthat/test-tidy_xlsx.R | 32 tidyxl-1.0.0/tidyxl/tests/testthat/test-validation.R |only tidyxl-1.0.0/tidyxl/tests/testthat/test-xlex.R |only tidyxl-1.0.0/tidyxl/tests/testthat/test-xlsx_cells.R |only tidyxl-1.0.0/tidyxl/tests/testthat/test-xlsx_color_theme.R |only tidyxl-1.0.0/tidyxl/tests/testthat/test-xlsx_sheet_names.R |only tidyxl-1.0.0/tidyxl/tests/testthat/xfd1048576.xlsx |only tidyxl-1.0.0/tidyxl/vignettes/data-validation-rules.Rmd |only tidyxl-1.0.0/tidyxl/vignettes/enron-constants.png |only tidyxl-1.0.0/tidyxl/vignettes/smells.Rmd |only tidyxl-1.0.0/tidyxl/vignettes/tidyxl.Rmd | 147 +- 127 files changed, 2767 insertions(+), 1537 deletions(-)
Title: Dynamic Hazard Models using State Space Models
Description: Contains functions that lets you fit dynamic hazard models using
state space models. The first implemented model is described in Fahrmeir
(1992) <doi:10.1080/01621459.1992.10475232> and Fahrmeir (1994)
<doi:10.1093/biomet/81.2.317>. Extensions hereof are available where the
Extended Kalman filter is replaced by an unscented Kalman filter and other
options including particle filters.
Author: Benjamin Christoffersen [cre, aut],
Alan Miller [cph],
Anthony Williams [cph],
Boost developers [cph],
R-core [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between dynamichazard versions 0.5.0 dated 2017-11-22 and 0.5.1 dated 2017-11-25
dynamichazard-0.5.0/dynamichazard/src/problem_data.cpp |only dynamichazard-0.5.1/dynamichazard/DESCRIPTION | 6 dynamichazard-0.5.1/dynamichazard/MD5 | 23 - dynamichazard-0.5.1/dynamichazard/R/options.R | 4 dynamichazard-0.5.1/dynamichazard/inst/doc/Bootstrap_illustration.pdf |binary dynamichazard-0.5.1/dynamichazard/inst/doc/Comparing_methods_for_logistic_models.pdf |binary dynamichazard-0.5.1/dynamichazard/inst/doc/Diagnostics.pdf |binary dynamichazard-0.5.1/dynamichazard/inst/doc/Particle_filtering.pdf |binary dynamichazard-0.5.1/dynamichazard/inst/doc/ddhazard.Rmd | 2 dynamichazard-0.5.1/dynamichazard/inst/doc/ddhazard.pdf |binary dynamichazard-0.5.1/dynamichazard/src/ddhazard/GMA_solver.cpp | 2 dynamichazard-0.5.1/dynamichazard/src/problem_data.h | 185 ++++++---- dynamichazard-0.5.1/dynamichazard/vignettes/ddhazard.Rmd | 2 13 files changed, 137 insertions(+), 87 deletions(-)
Title: Data-Limited Methods Toolkit
Description: Development, simulation testing, and implementation of management
procedures for data-limited fisheries
(see Carruthers et al (2014) <doi:10.1016/j.fishres.2013.12.014>).
Author: Tom Carruthers [aut, cre],
Adrian Hordyk [aut]
Maintainer: Tom Carruthers <t.carruthers@fisheries.ubc.ca>
Diff between DLMtool versions 5.0.1 dated 2017-11-24 and 5.0.2 dated 2017-11-25
DESCRIPTION | 8 +- MD5 | 120 +++++++++++++++++++-------------------- R/OMinit_doc.R | 4 - R/SampleFleetPars.r | 27 ++++++-- R/iSCAM2DLM.R | 77 ++++++++++++++++++++++++- R/plotOM.R | 16 ++++- R/plotStock.r | 5 - R/runMSE.r | 1 data/Albacore.RData |binary data/Atlantic_mackerel.RData |binary data/Blue_shark.RData |binary data/Bluefin_tuna.RData |binary data/Bluefin_tuna_WAtl.RData |binary data/Butterfish.RData |binary data/China_rockfish.RData |binary data/Cobia.RData |binary data/DataDescription.RData |binary data/DecE_Dom.RData |binary data/DecE_HDom.RData |binary data/DecE_NDom.RData |binary data/Example_datafile.RData |binary data/Feasibility.RData |binary data/Feasibility2.RData |binary data/FlatE_Dom.RData |binary data/FlatE_HDom.RData |binary data/FlatE_NDom.RData |binary data/FleetDescription.RData |binary data/Generic_DecE.RData |binary data/Generic_FlatE.RData |binary data/Generic_IncE.RData |binary data/Generic_fleet.RData |binary data/Generic_obs.RData |binary data/Gulf_blue_tilefish.RData |binary data/Herring.RData |binary data/ImpDescription.RData |binary data/Imprecise_Biased.RData |binary data/Imprecise_Unbiased.RData |binary data/IncE_HDom.RData |binary data/IncE_NDom.RData |binary data/Low_Effort_Non_Target.RData |binary data/Mackerel.RData |binary data/OMDescription.RData |binary data/ObsDescription.RData |binary data/Overages.RData |binary data/Perfect_Imp.RData |binary data/Perfect_Info.RData |binary data/Porgy.RData |binary data/Precise_Biased.RData |binary data/Precise_Unbiased.RData |binary data/Red_snapper.RData |binary data/Rockfish.RData |binary data/Simulation_1.RData |binary data/Snapper.RData |binary data/Sole.RData |binary data/StockDescription.RData |binary data/Target_All_Fish.RData |binary data/Targeting_Small_Fish.RData |binary data/Toothfish.RData |binary data/ourReefFish.RData |binary data/testOM.RData |binary man/iSCAM2DLM.Rd | 4 - 61 files changed, 181 insertions(+), 81 deletions(-)
Title: Tools for Storing, Restoring and Searching for R Objects
Description: Data exploration and modelling is a process in which a lot of data
artifacts are produced. Artifacts like: subsets, data aggregates, plots,
statistical models, different versions of data sets and different versions
of results. The more projects we work with the more artifacts are produced
and the harder it is to manage these artifacts. Archivist helps to store
and manage artifacts created in R. Archivist allows you to store selected
artifacts as a binary files together with their metadata and relations.
Archivist allows to share artifacts with others, either through shared
folder or github. Archivist allows to look for already created artifacts by
using it's class, name, date of the creation or other properties. Makes it
easy to restore such artifacts. Archivist allows to check if new artifact
is the exact copy that was produced some time ago. That might be useful
either for testing or caching.
Author: Przemyslaw Biecek [aut, cre],
Marcin Kosinski [aut],
Witold Chodor [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between archivist versions 2.1.2 dated 2016-12-31 and 2.2 dated 2017-11-25
DESCRIPTION | 9 MD5 | 169 +++++----- NAMESPACE | 6 NEWS.md | 17 + R/Repository.R | 4 R/Tags.R | 6 R/addArchivistHooks.R | 4 R/addTagsRepo.R | 73 ++++ R/ahistory.R | 3 R/alink.R | 3 R/archivist-package.R | 7 R/archivistOptions.R | 4 R/aread.R | 39 ++ R/asearch.R | 50 ++ R/asession.R | 4 R/atags.R | 4 R/atrace.R | 3 R/cache.R | 4 R/copyToRepo.R | 8 R/createEmptyRepo.R | 101 ++++- R/createMDGallery.R | 4 R/deleteRepo.R | 3 R/getRemoteHook.R | 4 R/getTags.R | 4 R/loadFromRepo.R | 4 R/magrittr.R | 5 R/md5hash.R | 4 R/restoreLibraries.R | 5 R/rmFromRepo.R | 22 - R/saveToRepo.R | 44 +- R/searchInRepo.R | 2 R/setRepo.R | 31 + R/shinySearchInLocalRepo.R | 4 R/showRepo.R | 5 R/splitTags.R | 4 R/summaryRepo.R | 7 R/zipRepo.R | 5 R/zzz.R | 7 build |only inst/CITATION | 31 - inst/doc |only inst/graphGallery/backpack.db |binary inst/graphGallery/gallery/c648ca6d0bb605062f5b9416818262e7.rda |only inst/graphGallery/gallery/ff575c261c949d073b2895b05d1097c3.rda |binary man/Repository.Rd | 29 + man/Tags.Rd | 22 + man/addHooksToPrint.Rd | 26 + man/addTagsRepo.Rd | 28 + man/aformat.Rd | 27 + man/ahistory.Rd | 29 + man/alink.Rd | 22 - man/archivist-package.Rd | 34 +- man/archivistOptions.Rd | 27 + man/aread.Rd | 31 + man/areadLocal.Rd |only man/asearch.Rd | 31 + man/asearchLocal.Rd |only man/asession.Rd | 32 + man/atrace.Rd | 31 + man/cache.Rd | 32 + man/copyToRepo.Rd | 32 + man/createEmptyRepo.Rd | 108 +++++- man/createMDGallery.Rd | 32 + man/deleteLocalRepo.Rd | 44 +- man/getRemoteHook.Rd | 28 + man/getTags.Rd | 44 +- man/loadFromRepo.Rd | 33 + man/magrittr.Rd | 17 - man/md5hash.Rd | 29 + man/pipe.Rd | 1 man/removeTagsRepo.Rd |only man/restoreLibs.Rd | 33 + man/rmFromLocalRepo.Rd | 46 +- man/saveToRepo.Rd | 36 +- man/searchInRepo.Rd | 60 ++- man/setRepo.Rd | 81 +++- man/shinySearchInRepo.Rd | 34 +- man/showRepo.Rd | 32 + man/splitTags.Rd | 32 + man/summaryRepo.Rd | 34 +- man/zipRepo.Rd | 44 +- tests/testthat/test_jss_artilce.R | 3 vignettes |only 83 files changed, 1379 insertions(+), 538 deletions(-)
Title: Execute Native Scripts
Description: Run complex native scripts with a single command, similar to system commands.
Author: Sagie Gur-Ari [aut, cre]
Maintainer: Sagie Gur-Ari <sagiegurari@gmail.com>
Diff between scriptexec versions 0.1.0 dated 2017-11-15 and 0.2.1 dated 2017-11-25
scriptexec-0.1.0/scriptexec/man/create_temp_file.Rd |only scriptexec-0.1.0/scriptexec/man/script_execute.Rd |only scriptexec-0.1.0/scriptexec/tests/testthat/test_script_execute.R |only scriptexec-0.2.1/scriptexec/DESCRIPTION | 6 scriptexec-0.2.1/scriptexec/MD5 | 50 +- scriptexec-0.2.1/scriptexec/NAMESPACE | 8 scriptexec-0.2.1/scriptexec/NEWS.md | 29 + scriptexec-0.2.1/scriptexec/R/scriptexec.R | 199 +++++++--- scriptexec-0.2.1/scriptexec/README.md | 141 +++---- scriptexec-0.2.1/scriptexec/build/vignette.rds |binary scriptexec-0.2.1/scriptexec/demo |only scriptexec-0.2.1/scriptexec/inst/doc/scriptexec.R | 27 + scriptexec-0.2.1/scriptexec/inst/doc/scriptexec.Rmd | 29 + scriptexec-0.2.1/scriptexec/inst/doc/scriptexec.html | 49 +- scriptexec-0.2.1/scriptexec/man/create_script_file.Rd |only scriptexec-0.2.1/scriptexec/man/execute.Rd |only scriptexec-0.2.1/scriptexec/man/generate_env_setup_script.Rd |only scriptexec-0.2.1/scriptexec/man/get_command.Rd | 9 scriptexec-0.2.1/scriptexec/man/get_platform_value.Rd |only scriptexec-0.2.1/scriptexec/man/is_windows.Rd | 3 scriptexec-0.2.1/scriptexec/man/modify_script.Rd | 12 scriptexec-0.2.1/scriptexec/man/scriptexec.Rd | 2 scriptexec-0.2.1/scriptexec/tests/testthat/helper.R |only scriptexec-0.2.1/scriptexec/tests/testthat/test_api_stability.R |only scriptexec-0.2.1/scriptexec/tests/testthat/test_create_script_file.R |only scriptexec-0.2.1/scriptexec/tests/testthat/test_execute.R |only scriptexec-0.2.1/scriptexec/tests/testthat/test_generate_env_setup_script.R |only scriptexec-0.2.1/scriptexec/tests/testthat/test_get_command.R |only scriptexec-0.2.1/scriptexec/tests/testthat/test_get_platform_value.R |only scriptexec-0.2.1/scriptexec/tests/testthat/test_is_windows.R |only scriptexec-0.2.1/scriptexec/tests/testthat/test_modify_script.R |only scriptexec-0.2.1/scriptexec/tools/build.R | 57 ++ scriptexec-0.2.1/scriptexec/tools/build.sh | 7 scriptexec-0.2.1/scriptexec/vignettes/scriptexec.Rmd | 29 + 34 files changed, 471 insertions(+), 186 deletions(-)
Title: Empirical Bayes Estimation and Inference
Description: Kiefer-Wolfowitz maximum likelihood estimation for mixture models
and some other density estimation and regression methods based on convex
optimization. See Koenker and Gu (2017) REBayes: An R Package for Empirical
Bayes Mixture Methods, Journal of Statistical Software, 82, 1--26,
<DOI: 10.18637/jss.v082.i08>.
Author: Roger Koenker [aut, cre],
Jiaying Gu [ctb],
Ivan Mizera [ctb]
Maintainer: Roger Koenker <rkoenker@uiuc.edu>
Diff between REBayes versions 0.85 dated 2017-05-04 and 1.1 dated 2017-11-25
DESCRIPTION | 12 +++++--- MD5 | 70 ++++++++++++++++++++++++++------------------------- R/Bmix.R | 3 ++ R/GLmix.R | 3 ++ R/GVmix.R | 5 ++- R/Gammamix.R | 5 ++- R/KWDual.R | 3 ++ R/Pmix.R | 5 ++- R/TLmix.R | 3 ++ R/Tncpmix.R | 4 ++ R/WGLVmix.R | 5 ++- R/WGVmix.R | 6 +++- R/WLVmix.R | 6 +++- R/WTLVmix.R | 3 +- R/Weibullmix.R | 3 ++ demo/00Index | 1 demo/Coss2.R |only inst/CITATION |only inst/ChangeLog | 5 +++ inst/doc/Bdecon.pdf |binary inst/doc/medde.Rnw | 7 +++-- inst/doc/medde.pdf |binary inst/doc/rebayes.pdf |binary man/Bmix.Rd | 3 ++ man/GLmix.Rd | 3 ++ man/GVmix.Rd | 5 ++- man/Gammamix.Rd | 5 ++- man/KWDual.Rd | 3 ++ man/Pmix.Rd | 5 ++- man/TLmix.Rd | 3 ++ man/Tncpmix.Rd | 3 ++ man/WGLVmix.Rd | 5 ++- man/WGVmix.Rd | 6 +++- man/WLVmix.Rd | 6 +++- man/WTLVmix.Rd | 3 +- man/Weibullmix.Rd | 3 ++ vignettes/medde.Rnw | 7 +++-- 37 files changed, 149 insertions(+), 60 deletions(-)
Title: Genetic Analysis Package
Description: It is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it
contains functions for sample size calculations of both
population-based and family-based designs, probability of
familial disease aggregation, kinship calculation, statistics
in linkage analysis, and association analysis involving genetic
markers including haplotype analysis with or without environmental
covariates.
Author: Jing Hua Zhao and colleagues with inputs from Kurt Hornik and
Brian Ripley
Maintainer: Jing Hua Zhao <jinghua.zhao@mrc-epid.cam.ac.uk>
Diff between gap versions 1.1-17 dated 2017-04-19 and 1.1-20 dated 2017-11-25
gap-1.1-17/gap/data/CDKN.RData |only gap-1.1-17/gap/data/hr1420.rda |only gap-1.1-17/gap/data/mhtdata.RData |only gap-1.1-17/gap/inst/tests/2ld |only gap-1.1-17/gap/inst/tests/chrsim |only gap-1.1-17/gap/inst/tests/comp.score/ibd_dist.out |only gap-1.1-17/gap/inst/tests/ehp |only gap-1.1-17/gap/inst/tests/fehp |only gap-1.1-17/gap/inst/tests/genecounting |only gap-1.1-17/gap/inst/tests/hap |only gap-1.1-17/gap/inst/tests/sas |only gap-1.1-17/gap/inst/tests/sim |only gap-1.1-17/gap/inst/tests/stata |only gap-1.1-17/gap/man/CDKN.Rd |only gap-1.1-17/gap/man/hr1420.Rd |only gap-1.1-17/gap/man/mhtdata.Rd |only gap-1.1-17/gap/vignettes/4w.rda |only gap-1.1-17/gap/vignettes/figures/4w.pdf |only gap-1.1-17/gap/vignettes/gap.enl |only gap-1.1-20/gap/ChangeLog | 11 + gap-1.1-20/gap/DESCRIPTION | 8 gap-1.1-20/gap/MD5 | 195 ++-------------------- gap-1.1-20/gap/R/mhtplot.R | 8 gap-1.1-20/gap/build/vignette.rds |binary gap-1.1-20/gap/inst/doc/gap.R | 99 +++++------ gap-1.1-20/gap/inst/doc/gap.Rnw | 32 +-- gap-1.1-20/gap/inst/doc/gap.pdf |binary gap-1.1-20/gap/inst/doc/h2.pdf |binary gap-1.1-20/gap/inst/doc/jss.pdf |binary gap-1.1-20/gap/inst/doc/pedtodot.pdf |binary gap-1.1-20/gap/inst/doc/rnews.Rnw | 1 gap-1.1-20/gap/inst/doc/rnews.pdf |binary gap-1.1-20/gap/man/comp.score.Rd | 3 gap-1.1-20/gap/man/gap-package.Rd | 2 gap-1.1-20/gap/man/pedtodot.Rd | 2 gap-1.1-20/gap/src/hap_c.c | 2 gap-1.1-20/gap/vignettes/1-1-13.pdf |binary gap-1.1-20/gap/vignettes/figures/ESplot.pdf |binary gap-1.1-20/gap/vignettes/figures/asplot.pdf |binary gap-1.1-20/gap/vignettes/figures/lukas.pdf |binary gap-1.1-20/gap/vignettes/figures/mhtplot.png |binary gap-1.1-20/gap/vignettes/figures/qqunif.pdf |binary gap-1.1-20/gap/vignettes/figures/w4.pdf |only gap-1.1-20/gap/vignettes/gap.Rnw | 32 +-- gap-1.1-20/gap/vignettes/peddraw.pdf |binary gap-1.1-20/gap/vignettes/rnews.Rnw | 1 46 files changed, 129 insertions(+), 267 deletions(-)
Title: Numerical Estimation of Sparse Hessians
Description: Estimates Hessian of a scalar-valued function, and returns it
in a sparse Matrix format. The sparsity pattern must be known in advance. The
algorithm is especially efficient for hierarchical models with a large number of
heterogeneous units. See Braun, M. (2017) <doi:10.18637/jss.v082.i10>.
Author: Michael Braun [aut, cre, cph]
Maintainer: Michael Braun <braunm@smu.edu>
Diff between sparseHessianFD versions 0.3.3.1 dated 2017-10-07 and 0.3.3.2 dated 2017-11-25
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- NEWS | 9 ++++++--- NEWS.md | 4 ++++ R/sparseHessianFD.R | 3 +++ inst/CITATION | 21 +++++++++++++-------- inst/doc/sparseHessianFD.Rnw | 6 +++--- inst/doc/sparseHessianFD.pdf |binary man/sparseHessianFD-package.Rd | 3 +++ man/sparseHessianFD.Rd | 2 +- vignettes/sparseHessianFD.Rnw | 6 +++--- 11 files changed, 52 insertions(+), 34 deletions(-)
More information about sparseHessianFD at CRAN
Permanent link
Title: Standard Evaluation Improved Interfaces for Common Data
Manipulation Tasks
Description: The 'seplyr' (standard evaluation 'dplyr') package supplies improved
standard evaluation adapter methods for important common data manipulation tasks.
In addition the 'seplyr' package supplies several new "key operations
bound together" methods. These include 'group_summarize()' (which
combines grouping, arranging and calculation in an atomic unit),
'add_group_summaries()' (which joins grouped summaries into a 'data.frame'
in a well documented manner), 'add_group_indices()' (which adds
per-group identifiers to a 'data.frame' without depending on row-order),
'partition_mutate_qt()' (which optimizes mutate sequences), and 'if_else_device()'
(which simulates per-row if-else blocks in expression sequences).
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between seplyr versions 0.1.6 dated 2017-11-17 and 0.5.0 dated 2017-11-25
DESCRIPTION | 33 ++++++++----------- MD5 | 68 ++++++++++++++++++++++------------------ NAMESPACE | 6 +++ NEWS.md | 5 ++ R/filter_nse.R | 3 + R/mutate_nse.R | 8 ++++ R/mutate_se.R | 5 ++ R/package.R | 26 ++++++--------- R/rename_se.R | 5 ++ R/stmtPlanner.R |only R/stringAlgebra.R | 3 - R/summarize_nse.R | 3 + R/transmute_nse.R | 3 + README.md | 7 +++- build/vignette.rds |binary inst/doc/MutatePartitioner.R |only inst/doc/MutatePartitioner.Rmd |only inst/doc/MutatePartitioner.html |only inst/doc/StringAlgebra.html | 10 ++--- inst/doc/mutate.html | 4 +- inst/doc/named_map_builder.html | 4 +- inst/doc/rename_se.html | 4 +- inst/doc/seplyr.Rmd | 10 ++--- inst/doc/seplyr.html | 11 +++--- inst/doc/using_seplyr.R | 19 ----------- inst/doc/using_seplyr.Rmd | 24 -------------- inst/doc/using_seplyr.html | 41 +----------------------- man/expand_expr.Rd | 3 - man/if_else_device.Rd |only man/mutate_nse.Rd | 6 +++ man/mutate_se.Rd | 6 +++ man/mutate_seb.Rd |only man/partition_mutate_qt.Rd |only man/partition_mutate_se.Rd |only man/quote_mutate.Rd |only man/rename_se.Rd | 6 +++ man/seplyr.Rd | 20 ++++------- vignettes/MutatePartitioner.Rmd |only vignettes/seplyr.Rmd | 10 ++--- vignettes/using_seplyr.Rmd | 24 -------------- 40 files changed, 165 insertions(+), 212 deletions(-)
Title: Bi-Directional Interface Between 'R' and 'Scala' with Callbacks
Description: The 'Scala' <http://www.scala-lang.org/> interpreter is embedded in 'R' and callbacks to 'R' from the embedded interpreter are supported. Conversely, the 'R' interpreter is embedded in 'Scala'. 'Scala' versions in the 2.11.x and 2.12.x series are supported.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 2.4.0 dated 2017-09-28 and 2.5.0 dated 2017-11-25
rscala-2.4.0/rscala/inst/java/scala-2.10 |only rscala-2.4.0/rscala/inst/java/scala-2.11/rscala_2.11-2.4.0.jar |only rscala-2.4.0/rscala/inst/java/scala-2.12/rscala_2.12-2.4.0.jar |only rscala-2.5.0/rscala/DESCRIPTION | 12 rscala-2.5.0/rscala/MD5 | 46 - rscala-2.5.0/rscala/NAMESPACE | 12 rscala-2.5.0/rscala/NEWS | 18 rscala-2.5.0/rscala/R/common.R | 8 rscala-2.5.0/rscala/R/globals.R | 13 rscala-2.5.0/rscala/R/is.scalaReference.R |only rscala-2.5.0/rscala/R/latest.R |only rscala-2.5.0/rscala/R/protocol.R | 29 rscala-2.5.0/rscala/R/rServer.R | 3 rscala-2.5.0/rscala/R/scala.R | 362 +++++++--- rscala-2.5.0/rscala/R/scalaConvert.R |only rscala-2.5.0/rscala/R/scalaInstall.R | 8 rscala-2.5.0/rscala/R/scalaRequire.R |only rscala-2.5.0/rscala/inst/doc/article.R | 25 rscala-2.5.0/rscala/inst/doc/article.Rnw | 134 ++- rscala-2.5.0/rscala/inst/doc/article.pdf |binary rscala-2.5.0/rscala/inst/doc/bootstrap-coverage.R | 4 rscala-2.5.0/rscala/inst/java/scala-2.11/rscala_2.11-2.5.0.jar |only rscala-2.5.0/rscala/inst/java/scala-2.12/rscala_2.12-2.5.0.jar |only rscala-2.5.0/rscala/java/rscala-sources.jar |binary rscala-2.5.0/rscala/man/constructor.Rd | 62 + rscala-2.5.0/rscala/man/is.scalaReference.Rd |only rscala-2.5.0/rscala/man/scalaConvert.Rd |only rscala-2.5.0/rscala/man/scalaRequire.Rd |only rscala-2.5.0/rscala/man/settings.Rd | 13 rscala-2.5.0/rscala/vignettes/article.Rnw | 134 ++- 30 files changed, 577 insertions(+), 306 deletions(-)
Title: Joint Mean-Covariance Models using 'Armadillo' and S4
Description: Fit joint mean-covariance models for longitudinal data. The models
and their components are represented using S4 classes and methods. The core
computational algorithms are implemented using the 'Armadillo' C++ library
for numerical linear algebra and 'RcppArmadillo' glue.
Author: Jianxin Pan [aut, cre],
Yi Pan [aut]
Maintainer: Jianxin Pan <Jianxin.Pan@manchester.ac.uk>
Diff between jmcm versions 0.1.7.0 dated 2016-10-19 and 0.1.8.0 dated 2017-11-25
jmcm-0.1.7.0/jmcm/man/ACD-class.Rd |only jmcm-0.1.7.0/jmcm/man/HPC-class.Rd |only jmcm-0.1.7.0/jmcm/man/MCD-class.Rd |only jmcm-0.1.7.0/jmcm/man/cash-ACD-method.Rd |only jmcm-0.1.7.0/jmcm/man/cash-HPC-method.Rd |only jmcm-0.1.7.0/jmcm/man/cash-MCD-method.Rd |only jmcm-0.1.8.0/jmcm/DESCRIPTION | 9 - jmcm-0.1.8.0/jmcm/MD5 | 50 ++---- jmcm-0.1.8.0/jmcm/NAMESPACE | 3 jmcm-0.1.8.0/jmcm/R/AllClass.R | 216 +++++++++++++-------------- jmcm-0.1.8.0/jmcm/R/RcppExports.R | 6 jmcm-0.1.8.0/jmcm/R/jmcm.R | 1 jmcm-0.1.8.0/jmcm/R/utilities.R | 60 +++++-- jmcm-0.1.8.0/jmcm/inst |only jmcm-0.1.8.0/jmcm/man/acd_estimation.Rd | 1 jmcm-0.1.8.0/jmcm/man/aids.Rd | 1 jmcm-0.1.8.0/jmcm/man/bootcurve.Rd | 1 jmcm-0.1.8.0/jmcm/man/cattle.Rd | 1 jmcm-0.1.8.0/jmcm/man/getJMCM.Rd | 2 jmcm-0.1.8.0/jmcm/man/hpc_estimation.Rd | 1 jmcm-0.1.8.0/jmcm/man/jmcm.Rd | 4 jmcm-0.1.8.0/jmcm/man/jmcmControl.Rd | 1 jmcm-0.1.8.0/jmcm/man/mcd_estimation.Rd | 1 jmcm-0.1.8.0/jmcm/man/meanplot.Rd | 1 jmcm-0.1.8.0/jmcm/man/modular.Rd | 5 jmcm-0.1.8.0/jmcm/man/regressogram.Rd | 1 jmcm-0.1.8.0/jmcm/man/show-jmcmMod-method.Rd | 1 jmcm-0.1.8.0/jmcm/src/RcppExports.cpp | 6 jmcm-0.1.8.0/jmcm/src/external.cpp | 20 +- jmcm-0.1.8.0/jmcm/src/init.c |only 30 files changed, 208 insertions(+), 184 deletions(-)
Title: Tools for Earth Meteorological Analysis
Description: Contains many functions useful for managing 'NetCDF' files (see <http://en.wikipedia.org/wiki/NetCDF>), get tide levels on any point of the globe, get moon phase and time for sun rise and fall, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between HelpersMG versions 2.0 dated 2017-09-24 and 3.0.0 dated 2017-11-25
DESCRIPTION | 11 ++-- MD5 | 28 +++++++--- NAMESPACE | 21 ++++++-- NEWS | 8 ++- R/HelpersMG-package.R | 4 - R/IC_clean_data.R |only R/IC_correlation_simplify.R |only R/IC_threshold_matrix.R |only R/ind_long_lat.R | 105 +++++++++++++++++------------------------ R/plot.IconoCorel.R |only R/sun.info.R | 2 inst/shiny/ui.R | 3 - man/HelpersMG-package.Rd | 4 - man/IC_clean_data.Rd |only man/IC_correlation_simplify.Rd |only man/IC_threshold_matrix.Rd |only man/ind_long_lat.Rd | 4 - man/plot.IconoCorel.Rd |only man/sun.info.Rd | 4 + 19 files changed, 105 insertions(+), 89 deletions(-)
Title: JAR Files of the Apache Commons Mathematics Library
Description: Java JAR files for the Apache Commons Mathematics Library for use by users and other packages.
Author: David B. Dahl [cre],
The Apache Software Foundation [aut, cph]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between commonsMath versions 1.0.0 dated 2017-05-24 and 1.1 dated 2017-11-25
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++++------ NAMESPACE | 2 +- NEWS | 3 +++ R/latest.R |only build/partial.rdb |binary inst/java/scala-2.11 |only inst/java/scala-2.12 |only java/README | 1 + java/commonsmath-sources.jar |only man/commonsMath-package.Rd | 4 ++-- 11 files changed, 22 insertions(+), 14 deletions(-)
Title: Protein Secondary Structure Prediction Using the Bamboo Method
Description: Implementation of the Bamboo methods described in Li, Dahl, Vannucci, Joo, and Tsai (2014) <DOI:10.1371/journal.pone.0109832>.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between bamboo versions 0.9.18 dated 2017-05-25 and 0.9.19 dated 2017-11-25
bamboo-0.9.18/bamboo/inst/java/scala-2.10 |only bamboo-0.9.18/bamboo/inst/java/scala-2.11/bamboo_2.11-0.9.18.jar |only bamboo-0.9.18/bamboo/inst/java/scala-2.12/bamboo_2.12-0.9.18.jar |only bamboo-0.9.19/bamboo/DESCRIPTION | 10 +++---- bamboo-0.9.19/bamboo/MD5 | 13 ++++------ bamboo-0.9.19/bamboo/NEWS | 9 ++++++ bamboo-0.9.19/bamboo/R/onLoad.R | 3 -- bamboo-0.9.19/bamboo/inst/java/scala-2.11/bamboo_2.11-0.9.19.jar |only bamboo-0.9.19/bamboo/inst/java/scala-2.12/bamboo_2.12-0.9.19.jar |only bamboo-0.9.19/bamboo/java/bamboo-sources.jar |binary 10 files changed, 21 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-13 0.1.0
Title: Some Functions to be Used as Shortcuts in 'RStudio'
Description: 'RStudio' as of recently offers the option to define addins and assign shortcuts to them. This package contains addins for a few most frequently used functions in a data scientist's (at least mine) daily work (like str(), example(), plot(), head(), view(), Desc()). Most of these functions will use the current selection in the editor window and send the specific command to the console while instantly executing it. Assigning shortcuts to these addins will save you quite a few keystrokes.
Author: Andri Signorell
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescToolsAddIns versions 0.9.1 dated 2017-06-29 and 0.9.2 dated 2017-11-25
DESCRIPTION | 10 +++---- MD5 | 12 ++++---- NAMESPACE | 2 - NEWS | 13 +++++++++ R/AddIns.R | 68 ++++++++++++++++++++++++++++++++++-------------- inst/rstudio/addins.dcf | 20 +++++++++----- man/DescToolsAddIns.Rd | 42 ++++++++++++++++------------- 7 files changed, 111 insertions(+), 56 deletions(-)
More information about DescToolsAddIns at CRAN
Permanent link
Title: Tools to Manage a Parametric Function that Describes Phenology
Description: Functions used to fit and test the phenology of species based on counts.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between phenology versions 6.0 dated 2017-09-24 and 6.0.3 dated 2017-11-25
DESCRIPTION | 8 +-- MD5 | 116 ++++++++++++++++++++++---------------------- NAMESPACE | 1 NEWS | 5 + R/Tagloss_L.R | 20 ++++++- R/Tagloss_fit.R | 8 +-- R/add_phenology.R | 2 R/extract_result.R | 2 R/fit_phenology.R | 6 +- R/logLik.Tagloss.R |only R/map_phenology.R | 5 + R/par_init.R | 5 + R/phenology-package.R | 6 +- R/phenology_MHmcmc.R | 2 R/phenology_MHmcmc_p.R | 2 R/plot.phenology.R | 2 R/plot.phenologymap.R | 2 R/plot_delta.R | 2 R/plot_phi.R | 2 R/print.phenology.R | 2 R/print.phenologymap.R | 2 R/print.phenologyout.R | 2 R/remove_site.R | 2 R/result_Gratiot.R | 2 R/result_Gratiot_mcmc.R | 2 R/shift_sinusoid.R | 6 +- R/summary.phenology.R | 2 R/summary.phenologymap.R | 2 R/summary.phenologyout.R | 2 man/Tagloss_L.Rd | 2 man/Tagloss_LengthObs.Rd | 2 man/Tagloss_daymax.Rd | 2 man/Tagloss_fit.Rd | 10 +-- man/Tagloss_format.Rd | 2 man/Tagloss_model.Rd | 2 man/Tagloss_simulate.Rd | 3 - man/add_phenology.Rd | 2 man/extract_result.Rd | 2 man/fit_phenology.Rd | 6 +- man/logLik.Tagloss.Rd |only man/map_phenology.Rd | 5 + man/par_init.Rd | 5 + man/phenology-package.Rd | 6 +- man/phenology_MHmcmc.Rd | 2 man/phenology_MHmcmc_p.Rd | 2 man/plot.Tagloss.Rd | 3 - man/plot.phenology.Rd | 2 man/plot.phenologymap.Rd | 2 man/plot_delta.Rd | 2 man/plot_phi.Rd | 2 man/print.phenology.Rd | 2 man/print.phenologymap.Rd | 2 man/print.phenologyout.Rd | 2 man/remove_site.Rd | 2 man/result_Gratiot.Rd | 2 man/result_Gratiot_mcmc.Rd | 2 man/shift_sinusoid.Rd | 6 +- man/summary.phenology.Rd | 2 man/summary.phenologymap.Rd | 2 man/summary.phenologyout.Rd | 2 60 files changed, 169 insertions(+), 139 deletions(-)