Tue, 28 Nov 2017

Package canvasXpress updated to version 1.17.9 with previous version 1.17.4 dated 2017-10-05

Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework in R. CanvasXpress is a standalone JavaScript library for reproducible research with complete tracking of data and end-user modifications stored in a single PNG image that can be played back. See <http://canvasxpress.org> for more information.
Author: Isaac Neuhaus [aut, cre], Connie Brett [ctb]
Maintainer: Connie Brett <connie@aggregate-genius.com>

Diff between canvasXpress versions 1.17.4 dated 2017-10-05 and 1.17.9 dated 2017-11-28

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Package plantecophys updated to version 1.3-2 with previous version 1.3 dated 2017-09-14

Title: Modelling and Analysis of Leaf Gas Exchange Data
Description: Coupled leaf gas exchange model, A-Ci curve simulation and fitting, Ball-Berry stomatal conductance models, leaf energy balance using Penman-Monteith, Cowan-Farquhar optimization, humidity unit conversions. See Duursma (2015) <doi:10.1371/journal.pone.0143346>.
Author: Remko Duursma [aut, cre]
Maintainer: Remko Duursma <remkoduursma@gmail.com>

Diff between plantecophys versions 1.3 dated 2017-09-14 and 1.3-2 dated 2017-11-28

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Package RcppAlgos updated to version 0.2.0 with previous version 0.1.2 dated 2017-11-03

Title: Tools for Combinatorics and Computational Mathematics
Description: Provides optimized functions implemented in C++ with 'Rcpp' for solving problems in combinatorics and computational mathematics. There is a combination function and a permutation function that are both flexible as well as efficient with respect to speed and memory. There are optional contraint arguments that when employed, generate all combinations/permutations of a vector meeting a specific criteria (E.g. finding all combinations such that the sum is less than a bound). The generalized permutation function is also capable of producing all permutations of multisets. Additionally, there are various sieving functions that quickly generate essential components for problems common in computational mathematics (E.g. number of comprime elements, divisors, prime factorizations, and complete factorizations for many numbers as well as primes in a range).
Author: Joseph Wood
Maintainer: Joseph Wood <jwood000@gmail.com>

Diff between RcppAlgos versions 0.1.2 dated 2017-11-03 and 0.2.0 dated 2017-11-28

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Package Dforest updated to version 0.4.2 with previous version 0.4.0 dated 2017-06-26

Title: Decision Forest
Description: Provides R-implementation of Decision forest algorithm, which combines the predictions of multiple independent decision tree models for a consensus decision. In particular, Decision Forest is a novel pattern-recognition method which can be used to analyze: (1) DNA microarray data; (2) Surface-Enhanced Laser Desorption/Ionization Time-of-Flight Mass Spectrometry (SELDI-TOF-MS) data; and (3) Structure-Activity Relation (SAR) data. In this package, three fundamental functions are provided, as (1)DF_train, (2)DF_pred, and (3)DF_CV. run Dforest() to see more instructions. Weida Tong (2003) <doi:10.1021/ci020058s>.
Author: Leihong Wu <leihong.wu@fda.hhs.gov>, Weida Tong (Weida.tong@fda.hhs.gov)
Maintainer: Leihong Wu <leihong.wu@fda.hhs.gov>

Diff between Dforest versions 0.4.0 dated 2017-06-26 and 0.4.2 dated 2017-11-28

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Package asbio updated to version 1.5 with previous version 1.4-2 dated 2017-06-19

Title: A Collection of Statistical Tools for Biologists
Description: Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.
Author: Ken Aho
Maintainer: Ken Aho <kenaho1@gmail.com>

Diff between asbio versions 1.4-2 dated 2017-06-19 and 1.5 dated 2017-11-28

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Package adehabitatLT updated to version 0.3.22 with previous version 0.3.21 dated 2016-08-31

Title: Analysis of Animal Movements
Description: A collection of tools for the analysis of animal movements.
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>

Diff between adehabitatLT versions 0.3.21 dated 2016-08-31 and 0.3.22 dated 2017-11-28

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Package adehabitatHS updated to version 0.3.13 with previous version 0.3.12 dated 2015-07-22

Title: Analysis of Habitat Selection by Animals
Description: A collection of tools for the analysis of habitat selection.
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>

Diff between adehabitatHS versions 0.3.12 dated 2015-07-22 and 0.3.13 dated 2017-11-28

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Package adehabitatHR updated to version 0.4.15 with previous version 0.4.14 dated 2015-07-22

Title: Home Range Estimation
Description: A collection of tools for the estimation of animals home range.
Author: Clement Calenge, contributions from Scott Fortmann-Roe
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>

Diff between adehabitatHR versions 0.4.14 dated 2015-07-22 and 0.4.15 dated 2017-11-28

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Package BALCONY updated to version 0.1.8 with previous version 0.1.6 dated 2017-08-08

Title: Better ALignment CONsensus analYsis
Description: Facilitates the evolutionary analysis and structure conservation study of specified amino acids in proteins.
Author: Michał Stolarczyk & Alicja Płuciennik
Maintainer: Michał Stolarczyk <stolarczyk.michal93@gmail.com>

Diff between BALCONY versions 0.1.6 dated 2017-08-08 and 0.1.8 dated 2017-11-28

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New package stpp with initial version 2.0-1
Package: stpp
Version: 2.0-1
Title: Space-Time Point Pattern Simulation, Visualisation and Analysis
Date: 2017-11-27
Authors@R: c(person("Edith", "Gabriel", role=c("aut","cre"),email="edith.gabriel@univ-avignon.fr"), person("Peter J","Diggle",role="aut",email="p.diggle@lancaster.ac.uk"), person("Barry","Rowlingson",role="aut",email="b.rowlingson@lancaster.ac.uk"), person("Francisco J","Rodriguez-Cortes",role="aut", email="cortesf@uji,es"))
Maintainer: Edith Gabriel <edith.gabriel@univ-avignon.fr>
Depends: R (>= 3.3.0), grDevices, graphics, rpanel, splancs
Imports: KernSmooth, ggplot2, gridExtra, plot3D, rgl, spatstat
Suggests: knitr(>= 1.11), rmarkdown(>= 0.8.1)
Description: Many of the models encountered in applications of point process methods to the study of spatio-temporal phenomena are covered in 'stpp'. This package provides statistical tools for analyzing the global and local second-order properties of spatio-temporal point processes, including estimators of the space-time inhomogeneous K-function and pair correlation function. It also includes tools to get static and dynamic display of spatio-temporal point patterns. See Gabriel et al (2013) <doi:10.18637/jss.v053.i02>.
License: GPL-3
LazyLoad: yes
NeedsCompilation: yes
RoxygenNote: 6.0.1
BuildVignettes: True
VignetteBuilder: knitr
BugReports: https://github.com/stpp-GitHub-community
Packaged: 2017-11-28 16:13:23 UTC; gabriele
Author: Edith Gabriel [aut, cre], Peter J Diggle [aut], Barry Rowlingson [aut], Francisco J Rodriguez-Cortes [aut]
Repository: CRAN
Date/Publication: 2017-11-28 19:15:35 UTC

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Package GetLattesData updated to version 0.9 with previous version 0.8 dated 2017-11-12

Title: Reading Bibliometric Data from Lattes Platform
Description: A simple API for downloading and reading xml data directly from Lattes <http://lattes.cnpq.br/>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>

Diff between GetLattesData versions 0.8 dated 2017-11-12 and 0.9 dated 2017-11-28

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Package GetHFData updated to version 1.5 with previous version 1.4 dated 2017-09-10

Title: Download and Aggregate High Frequency Trading Data from Bovespa
Description: Downloads and aggregates high frequency trading data for Brazilian instruments directly from Bovespa ftp site <ftp://ftp.bmf.com.br/MarketData/>.
Author: Marcelo Perlin [aut, cre], Henrique Ramos [ctb]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>

Diff between GetHFData versions 1.4 dated 2017-09-10 and 1.5 dated 2017-11-28

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New package cvcrand with initial version 0.0.1
Package: cvcrand
Type: Package
Title: Efficient Design and Analysis of Cluster Randomized Trials
Version: 0.0.1
Date: 2017-11-28
Authors@R: c(person(given = "Hengshi", family = "Yu", role = c("aut", "cre"), email="hengshi@umich.edu"), person(given = "John A.", family = "Gallis", role ="aut", email = "john.gallis@duke.edu"), person(given = "Fan", family = "Li", role ="aut", email = "frank.li@duke.edu"), person(given = "Elizabeth L.", family = "Turner", role ="aut", email = "liz.turner@duke.edu"))
Maintainer: Hengshi Yu <hengshi@umich.edu>
Description: Constrained randomization by Raab and Butcher (2001) <doi:10.1002/1097-0258(20010215)20:3%3C351::AID-SIM797%3E3.0.CO;2-C> is suitable for cluster randomized trials (CRTs) with a small number of clusters (e.g., 20 or fewer). The procedure of constrained randomization is based on the baseline values of some cluster-level covariates specified. The intervention effect on the individual outcome can then be analyzed through clustered permutation test introduced by Gail, et al. (1996) <doi:10.1002/(SICI)1097-0258(19960615)15:11%3C1069::AID-SIM220%3E3.0.CO;2-Q>. Motivated from Li, et al. (2016) <doi:10.1002/sim.7410>, the package performs constrained randomization on the baseline values of cluster-level covariates and cluster permutation test on the individual-level outcome for cluster randomized trials.
License: GPL (>= 2)
LazyData: TRUE
Depends: R (>= 3.3.1)
Imports: tableone
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-11-28 18:43:07 UTC; Hengshi Yu (Oliver)
Author: Hengshi Yu [aut, cre], John A. Gallis [aut], Fan Li [aut], Elizabeth L. Turner [aut]
Repository: CRAN
Date/Publication: 2017-11-28 19:06:15 UTC

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New package CorShrink with initial version 0.1.1
Package: CorShrink
Type: Package
Title: Adaptive Shrinkage of Correlation Vectors and Matrices
Version: 0.1.1
Date: 2017-11-26
Author: person("Kushal", "Dey", email = "kkdey@uchicago.edu", role = c("aut","cre"), "Matthew", "Stephens", email = "mstephens@uchicago.edu", role = "aut")
Maintainer: Kushal Dey <kkdey@uchicago.edu>
Description: Performs adaptive shrinkage of correlation and covariance matrices using a mixture model prior over the Fisher z-transformation of the correlations, Stephens (2016) <doi:10.1093/biostatistics/kxw041> with the method flexible in choosing a separate shrinkage intensity for each cell of the correlation or covariance matrices: it is particularly efficient in handling missing data in the data matrix.
Depends: R (>= 3.2),
Imports: ashr, SQUAREM, reshape2, Matrix
Suggests: knitr, BiocStyle, corpcor, glasso, Biobase, roxygen2, RColorBrewer, devtools, xtable
URL: https://github.com/kkdey/CorShrink
License: GPL (>= 2)
LazyData: true
Encoding: UTF-8
VignetteBuilder: knitr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-11-28 15:38:34 UTC; kushal
Repository: CRAN
Date/Publication: 2017-11-28 19:02:21 UTC

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New package tipr with initial version 0.1.1
Package: tipr
Type: Package
Title: Tipping Point Analyses
Version: 0.1.1
Author: Lucy D'Agostino McGowan
Maintainer: Lucy D'Agostino McGowan <ld.mcgowan@vanderbilt.edu>
Description: The strength of evidence provided by epidemiological and observational studies is inherently limited by the potential for unmeasured confounding. We focus on three key quantities: the observed bound of the confidence interval closest to the null, a plausible residual effect size for an unmeasured continuous or binary confounder, and a realistic mean difference or prevalence difference for this hypothetical confounder. Building on the methods put forth by Lin, Psaty, & Kronmal (1998) <doi:10.2307/2533848>, we can use these quantities to assess how an unmeasured confounder may tip our result to insignificance, rendering the study inconclusive.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: testthat
Imports: broom, tibble, purrr
NeedsCompilation: no
Packaged: 2017-11-28 14:17:45 UTC; lucymcgowan
Repository: CRAN
Date/Publication: 2017-11-28 18:33:41 UTC

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New package Sim.PLFN with initial version 1.0
Package: Sim.PLFN
Type: Package
Title: Simulation of Piecewise Linear Fuzzy Numbers
Version: 1.0
Date: 2017-11-17
Author: Abbas Parchami (Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran)
Maintainer: Abbas Parchami <parchami@uk.ac.ir>
Description: The definition of fuzzy random variable and the methods of simulation from fuzzy random variables are two challenging statistical problems in three recent decades. This package is organized based on a special definition of fuzzy random variable and simulate fuzzy random variable by Piecewise Linear Fuzzy Numbers (PLFNs); see Coroianua et al. (2013) <doi:10.1016/j.fss.2013.02.005> for details about PLFNs. Some important statistical functions are considered for obtaining the membership function of main statistics, such as mean, variance, summation, standard deviation and coefficient of variance. Some of applied advantages of 'Sim.PLFN' package are: (1) Easily generating / simulation a random sample of PLFN, (2) drawing the membership functions of the simulated PLFNs or the membership function of the statistical result, and (3) Considering the simulated PLFNs for arithmetic operation or importing into some statistical computation. Finally, it must be mentioned that 'Sim.PLFN' package works on the basis of 'FuzzyNumbers' package.
License: LGPL (>= 3)
Imports: FuzzyNumbers, DISTRIB
NeedsCompilation: no
Packaged: 2017-11-28 04:12:15 UTC; Parchami
Repository: CRAN
Date/Publication: 2017-11-28 18:27:30 UTC

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New package preference with initial version 0.1.2
Package: preference
Type: Package
Title: 2-Stage Clinical Trial Design and Analysis
Version: 0.1.2
Date: 2017-06-14
Authors@R: c(person(given="Briana", family="Cameron", email="briana.cameron@yale.edu", role=c("aut", "cph")), person(given="Denise", family="Esserman", email="denise.esserman@yale.edu", role="ctb"), person(given="Michael",family="Kane",email="michael.kane@yale.edu",role=c("cre", "ctb")))
URL: https://github.com/kaneplusplus/preference
BugReports: https://github.com/kaneplusplus/preference/issues
Description: Design and analyze two-stage randomized trials with a continuous outcome measure. The package contains functions to compute the required sample size needed to detect a given preference, treatment, and selection effect; alternatively, the package contains functions that can report the study power given a fixed sample size. Finally, analysis functions are provided to test each effect using either summary data (i.e. means, variances) or raw study data.
License: LGPL-2
Suggests: knitr, testthat, ggplot2,
VignetteBuilder: knitr
RoxygenNote: 6.0.1
LazyData: true
NeedsCompilation: no
Packaged: 2017-11-27 20:41:07 UTC; mike
Author: Briana Cameron [aut, cph], Denise Esserman [ctb], Michael Kane [cre, ctb]
Maintainer: Michael Kane <michael.kane@yale.edu>
X-CRAN-Comment: Archived on 2017-11-28 for policy violation.
Repository: CRAN
Date/Publication: 2017-11-28 17:39:40 UTC

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Package Nippon updated to version 0.6.5 with previous version 0.6.4 dated 2017-11-22

Title: Japanese Utility Functions and Data
Description: Japan-specific data is sometimes too unhandy for R users to manage. The utility functions and data in this package disencumber us from such an unnecessary burden.
Author: Susumu Tanimura <aruminat@gmail.com> [aut, cre], Hironobu Takahashi [cph], Hajime Baba [cph], Takatsugu Nokubi [cph]
Maintainer: Susumu Tanimura <aruminat@gmail.com>

Diff between Nippon versions 0.6.4 dated 2017-11-22 and 0.6.5 dated 2017-11-28

 ChangeLog                  |    5 +++++
 DESCRIPTION                |    8 ++++----
 MD5                        |   14 +++++++-------
 NAMESPACE                  |    4 ++--
 R/JapanPrefecturesMap.R    |    2 +-
 R/zen2han.R                |   17 ++++++++++++++++-
 man/JapanPrefecturesMap.Rd |    2 --
 man/zen2han.Rd             |   22 +++++++++++++++++-----
 8 files changed, 52 insertions(+), 22 deletions(-)

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New package MoEClust with initial version 1.0.0
Package: MoEClust
Type: Package
Date: 2017-11-28
Title: Parsimonious Model-Based Clustering with Covariates
Version: 1.0.0
Authors@R: c(person("Keefe", "Murphy", email = "keefe.murphy@ucd.ie", role = c("aut", "cre")), person("Thomas Brendan", "Murphy", email = "brendan.murphy@ucd.ie", role = "ctb"))
Description: Clustering via parsimonious Mixtures of Experts using the MoEClust models introduced by Murphy and Murphy (2017) <arXiv:1711.05632>. This package fits finite Gaussian mixture models with gating and expert network covariates using parsimonious covariance parameterisations from 'mclust' via the EM algorithm. Visualisation of the results of such models using generalised pairs plots is also facilitated.
Depends: R (>= 2.10)
License: GPL (>= 2)
Encoding: UTF-8
URL: https://cran.r-project.org/package=MoEClust
BugReports: https://github.com/Keefe-Murphy/MoEClust
LazyData: true
Imports: grid, lattice, matrixStats, mclust (>= 5.1), mvnfast, nnet, vcd
Suggests: cluster, geometry, knitr, rmarkdown
RoxygenNote: 6.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-11-28 02:54:04 UTC; Keefe
Author: Keefe Murphy [aut, cre], Thomas Brendan Murphy [ctb]
Maintainer: Keefe Murphy <keefe.murphy@ucd.ie>
Repository: CRAN
Date/Publication: 2017-11-28 18:24:21 UTC

More information about MoEClust at CRAN
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Package BatchJobs updated to version 1.7 with previous version 1.6 dated 2015-03-18

Title: Batch Computing with R
Description: Provides Map, Reduce and Filter variants to generate jobs on batch computing systems like PBS/Torque, LSF, SLURM and Sun Grid Engine. Multicore and SSH systems are also supported. For further details see the project web page.
Author: Bernd Bischl <bernd_bischl@gmx.net>, Michel Lang <michellang@gmail.com>, Henrik Bengtsson <henrikb@braju.com>
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>

Diff between BatchJobs versions 1.6 dated 2015-03-18 and 1.7 dated 2017-11-28

 BatchJobs-1.6/BatchJobs/R/writeRscripts.R                      |only
 BatchJobs-1.7/BatchJobs/DESCRIPTION                            |   14 
 BatchJobs-1.7/BatchJobs/MD5                                    |  308 +++++-----
 BatchJobs-1.7/BatchJobs/NAMESPACE                              |   60 +
 BatchJobs-1.7/BatchJobs/NEWS                                   |   26 
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 BatchJobs-1.7/BatchJobs/R/Packages.R                           |   32 -
 BatchJobs-1.7/BatchJobs/R/Registry.R                           |   62 --
 BatchJobs-1.7/BatchJobs/R/Resources.R                          |   12 
 BatchJobs-1.7/BatchJobs/R/Worker.R                             |   18 
 BatchJobs-1.7/BatchJobs/R/WorkerLinux.R                        |   26 
 BatchJobs-1.7/BatchJobs/R/applyJobFunction.R                   |    3 
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 BatchJobs-1.7/BatchJobs/R/database.R                           |   59 +
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 162 files changed, 1203 insertions(+), 1025 deletions(-)

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New package AssocAFC with initial version 1.0.1
Package: AssocAFC
Type: Package
Title: Allele Frequency Comparison
Version: 1.0.1
Author: Khalid B. Kunji [aut, cre], Mohamad Saad [aut]
Authors@R: c(person(given = "Khalid B.", family = "Kunji", role = c("aut", "cre"), email = "kkunji@hbku.edu.qa"), person(given = "Mohamad", family = "Saad", role = c("aut"), email = "msaad@hbku.edu.qa"))
Maintainer: Khalid B. Kunji <kkunji@hbku.edu.qa>
Repository: CRAN
Description: When doing association analysis one does not always have the genotypes for the control population. In such cases it may be necessary to fall back on frequency based tests using well known sources for the frequencies in the control population, for instance, from the 1000 Genomes Project. The Allele Frequency Comparison ('AssocAFC') package performs multiple rare variant association analyses in both population and family-based GWAS (Genome-Wide Association Study) designs. It includes three score tests that are based on the difference of the sum of allele frequencies between cases and controls. Two of these tests, Wcorrected() and Wqls(), are collapsing-based tests and suffer from having protective and risk variants. The third test, afcSKAT(), is a score test that overcomes the mix of SNP (Single-Nucleotide Polymorphism) effect directions. For more details see Saad M and Wijsman EM (2017) <doi:10.1093/bib/bbx107>.
License: GPL (>= 3)
URL: https://www.r-project.org, https://doi.org/10.1093/bib/bbx107
Imports: CompQuadForm
LinkingTo:
Depends: R (>= 3.4.1)
Encoding: UTF-8
LazyData: true
KeepSource: TRUE
NeedsCompilation: no
Packaged: 2017-11-26 12:46:21 UTC; kunji
Date/Publication: 2017-11-28 18:30:16 UTC

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Package ANN2 updated to version 1.5 with previous version 1.4 dated 2017-11-24

Title: Artificial Neural Networks for Anomaly Detection
Description: Training of general classification and regression neural networks using gradient descent. Special features include a function for training replicator neural networks and a function for training autoencoders. Multiple activation and cost functions (including Huber and pseudo-Huber) are supported, as well as L1 and L2 regularization, momentum, early stopping and the possibility to specify a learning rate schedule. The package contains a vectorized gradient descent implementation which facilitates faster training through batch learning.
Author: Bart Lammers
Maintainer: Bart Lammers <bart.f.lammers@gmail.com>

Diff between ANN2 versions 1.4 dated 2017-11-24 and 1.5 dated 2017-11-28

 DESCRIPTION            |    6 +-
 MD5                    |   18 ++++----
 R/RcppExports.R        |    4 +
 R/callable.R           |   83 +++++++++++++++++++++++++----------------
 R/required-functions.R |   99 ++++++++++++++++++++++++++++---------------------
 man/autoencoder.Rd     |   19 ++++++---
 man/neuralnetwork.Rd   |    8 +--
 man/replicator.Rd      |   18 +++++---
 src/RcppExports.cpp    |   12 +++++
 src/rcpp-nn.cpp        |   32 ++++++++++++---
 10 files changed, 192 insertions(+), 107 deletions(-)

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New package bayesmeta with initial version 2.0
Package: bayesmeta
Type: Package
Title: Bayesian Random-Effects Meta-Analysis
Version: 2.0
Date: 2017-11-28
Authors@R: c(person("Christian", "Roever", role=c("aut","cre"), email="christian.roever@med.uni-goettingen.de"), person("Tim", "Friede", role="ctb", email="tim.friede@med.uni-goettingen.de"))
Author: Christian Roever [aut, cre], Tim Friede [ctb]
Maintainer: Christian Roever <christian.roever@med.uni-goettingen.de>
Depends: forestplot (>= 1.6)
Suggests: metafor, compute.es, knitr, rmarkdown, R.rsp
Description: A collection of functions allowing to derive the posterior distribution of the two parameters in a random-effects meta-analysis, and providing functionality to evaluate joint and marginal posterior probability distributions, predictive distributions, shrinkage effects, posterior predictive p-values, etc.
License: GPL (>= 2)
VignetteBuilder: knitr, R.rsp
NeedsCompilation: no
Packaged: 2017-11-28 16:14:58 UTC; christian
Repository: CRAN
Date/Publication: 2017-11-28 16:37:28 UTC

More information about bayesmeta at CRAN
Permanent link

Package bayesmeta (with last version 1.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-09-08 1.6
2017-07-08 1.5
2017-02-17 1.4
2016-11-15 1.3
2016-07-03 1.2
2015-12-16 1.1
2015-12-06 1.0

Permanent link
Package preference (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-06-16 0.1.0

Permanent link
Package spData updated to version 0.2.6.7 with previous version 0.2.6.4 dated 2017-11-12

Title: Datasets for Spatial Analysis
Description: Diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis. It includes R data of class sf (defined by the package 'sf'), Spatial (sp), and nb (spdep). Unlike other spatial data packages such as 'rnaturalearth' and 'maps', it also contains data stored in a range of file formats including GeoJSON, ESRI Shapefile and GeoPackage. Some of the datasets are designed to illustrate specific analysis techniques. cycle_hire and cycle_hire_osm, for example, is designed to illustrate point pattern analysis techniques.
Author: Roger Bivand [aut], Jakub Nowosad [aut, cre] (0000-0002-1057-3721), Robin Lovelace [aut] (0000-0001-5679-6536)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>

Diff between spData versions 0.2.6.4 dated 2017-11-12 and 0.2.6.7 dated 2017-11-28

 spData-0.2.6.4/spData/R/nz-height.R               |only
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 spData-0.2.6.7/spData/R/SplashDams.R              |    8 +
 spData-0.2.6.7/spData/R/afcon.R                   |   16 ++-
 spData-0.2.6.7/spData/R/auckland.R                |   15 ++-
 spData-0.2.6.7/spData/R/baltimore.R               |    8 +
 spData-0.2.6.7/spData/R/boston.R                  |   24 ++---
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 spData-0.2.6.7/spData/R/wheat.R                   |    9 +-
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 spData-0.2.6.7/spData/README.md                   |    3 
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New package outbreaker2 with initial version 1.0-0
Package: outbreaker2
Version: 1.0-0
Date: 2017-11-24
Title: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
Authors@R: c(person("Thibaut", "Jombart", email = "thibautjombart@gmail.com", role = c("aut")), person("Finlay", "Campbell", email = "f.campbell15@imperial.ac.uk", role = c("aut", "cre")), person("Rich", "Fitzjohn", email = "r.fitzjohn@imperial.ac.uk", role = c("aut")))
Maintainer: Finlay Campbell <f.campbell15@imperial.ac.uk>
Description: Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>.
License: MIT + file LICENSE
Suggests: coda, microbenchmark, testthat, knitr, rmarkdown, igraph
Depends: R (>= 3.0.0)
Imports: utils, methods, stats, grDevices, Rcpp, ape, ggplot2, magrittr, visNetwork
LazyData: true
LinkingTo: Rcpp
RoxygenNote: 6.0.1
SystemRequirements: C++11
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2017-11-24 13:57:25 UTC; fc1915
Author: Thibaut Jombart [aut], Finlay Campbell [aut, cre], Rich Fitzjohn [aut]
Repository: CRAN
Date/Publication: 2017-11-28 13:56:22 UTC

More information about outbreaker2 at CRAN
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Package mosaicCore updated to version 0.4.2 with previous version 0.4.0 dated 2017-08-26

Title: Common Utilities for Other MOSAIC-Family Packages
Description: Common utilities used in other MOSAIC-family packages are collected here.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel T. Kaplan <kaplan@macalester.edu>, Nicholas J. Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>

Diff between mosaicCore versions 0.4.0 dated 2017-08-26 and 0.4.2 dated 2017-11-28

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Package mosaic updated to version 1.1.1 with previous version 1.1.0 dated 2017-08-26

Title: Project MOSAIC Statistics and Mathematics Teaching Utilities
Description: Data sets and utilities from Project MOSAIC (<http://mosaic-web.org>) used to teach mathematics, statistics, computation and modeling. Funded by the NSF, Project MOSAIC is a community of educators working to tie together aspects of quantitative work that students in science, technology, engineering and mathematics will need in their professional lives, but which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel T. Kaplan <kaplan@macalester.edu>, Nicholas J. Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>

Diff between mosaic versions 1.1.0 dated 2017-08-26 and 1.1.1 dated 2017-11-28

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Package knor updated to version 0.0-3 with previous version 0.0-2 dated 2017-09-10

Title: Non-Uniform Memory Access ('NUMA') Optimized, Parallel K-Means
Description: The k-means 'NUMA' Optimized Routine library or 'knor' is a highly optimized and fast library for computing k-means in parallel with accelerations for Non-Uniform Memory Access ('NUMA') architectures.
Author: Disa Mhembere [aut, cre]
Maintainer: Disa Mhembere <disa@jhu.edu>

Diff between knor versions 0.0-2 dated 2017-09-10 and 0.0-3 dated 2017-11-28

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Package jointseg updated to version 1.0.1 with previous version 1.0.0 dated 2017-11-27

Title: Joint Segmentation of Multivariate (Copy Number) Signals
Description: Methods for fast segmentation of multivariate signals into piecewise constant profiles and for generating realistic copy-number profiles. A typical application is the joint segmentation of total DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism (SNP) microarrays in cancer studies. The methods are described in Pierre-Jean, Rigaill and Neuvial (2015) <doi:10.1093/bib/bbu026>.
Author: Morgane Pierre-Jean [aut, cre], Pierre Neuvial [aut], Guillem Rigaill [aut]
Maintainer: Morgane Pierre-Jean <mpierrejean.pro@gmail.com>

Diff between jointseg versions 1.0.0 dated 2017-11-27 and 1.0.1 dated 2017-11-28

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Package coin updated to version 1.2-2 with previous version 1.2-1 dated 2017-07-17

Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems.
Author: Torsten Hothorn [aut, cre], Kurt Hornik [aut], Mark A. van de Wiel [aut], Henric Winell [aut], Achim Zeileis [aut] (0000-0003-0918-3766)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between coin versions 1.2-1 dated 2017-07-17 and 1.2-2 dated 2017-11-28

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Package adehabitatMA updated to version 0.3.12 with previous version 0.3.11 dated 2016-08-31

Title: Tools to Deal with Raster Maps
Description: A collection of tools to deal with raster maps.
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>

Diff between adehabitatMA versions 0.3.11 dated 2016-08-31 and 0.3.12 dated 2017-11-28

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Package adehabitat updated to version 1.8.19 with previous version 1.8.18 dated 2015-07-22

Title: Analysis of Habitat Selection by Animals
Description: A collection of tools for the analysis of habitat selection by animals.
Author: Clement Calenge, contributions from Mathieu Basille, Stephane Dray and Scott Fortmann-Roe
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>

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Package xltabr updated to version 0.1.2 with previous version 0.1.1 dated 2017-10-24

Title: Automatically Write Beautifully Formatted Cross Tabulations/Contingency Tables to Excel
Description: Writes beautifully formatted cross tabulations to Excel using 'openxlsx'. It has been developed to help automate the process of publishing Official Statistics. The user provides a dataframe, which is outputted to Excel with various types of rich formatting which are automatically detected from the structure of the cross tabulation. Documentation can be found at the following url <https://github.com/moj-analytical-services/xltabr>.
Author: Robin Linacre [aut, cre], Karik Isichei [aut]
Maintainer: Robin Linacre <robinlinacre@hotmail.com>

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Package ems updated to version 1.0.0 with previous version 0.3.1.6 dated 2017-04-26

Title: Epimed Solutions Collection for Data Editing, Analysis, and Benchmarking of Health Units
Description: Collection of functions for data analysis and editing of clinical and epidemiological data. Most of them are related to benchmarking with prediction models.
Author: Lunna Borges [aut], Pedro Brasil [aut, cre]
Maintainer: Pedro Brasil <pedro.brasil@epimedsolutions.com>

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Package Sim.DiffProc updated to version 4.0 with previous version 3.8 dated 2017-09-16

Title: Simulation of Diffusion Processes
Description: A package for symbolic and numerical computations on scalar and multivariate systems of stochastic differential equations. It provides users with a wide range of tools to simulate, estimate, analyze, and visualize the dynamics of these systems in both forms Itô and Stratonovich. Statistical analysis with Parallel Monte-Carlo and moment equations methods of SDE's. Enabled many searchers in different domains to use these equations to modeling practical problems in financial and actuarial modeling and other areas of application, e.g., modeling and simulate of first passage time problem in shallow water using the attractive center (Boukhetala K, 1996).
Author: Arsalane Chouaib Guidoum [cre, aut], Kamal Boukhetala [aut]
Maintainer: Arsalane Chouaib Guidoum <acguidoum@usthb.dz>

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Package IndepTest updated to version 0.1.0 with previous version 0.0.6 dated 2017-11-15

Title: Nonparametric Independence Tests Based on Entropy Estimation
Description: Implementations of the weighted Kozachenko-Leonenko entropy estimator and independence tests based on this estimator, (Kozachenko and Leonenko (1987) <http://mi.mathnet.ru/eng/ppi797>). Also includes a goodness-of-fit test for a linear model which is an independence test between covariates and errors.
Author: Thomas B. Berrett <t.berrett@statslab.cam.ac.uk> [aut], Daniel J. Grose <dan.grose@lancaster.ac.uk> [cre,ctb], Richard J. Samworth <r.samworth@statslab.cam.ac.uk> [aut]
Maintainer: Daniel Grose <dan.grose@lancaster.ac.uk>

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Package geometa updated to version 0.2-0 with previous version 0.1-0 dated 2017-05-26

Title: Tools for Reading and Writing ISO/OGC Geographic Metadata
Description: Provides facilities to handle reading and writing of geographic metadata defined with OGC/ISO 19115, 11119 and 19110 geographic information metadata standards, and encoded using the ISO 19139 (XML) standard. It includes also a facility to check the validity of ISO 19139 XML encoded metadata.
Author: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>

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 geometa-0.2-0/geometa/MD5                                                   |  739 +++++++---
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Package WVPlots updated to version 0.2.7 with previous version 0.2.6 dated 2017-08-29

Title: Common Plots for Analysis
Description: Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'. Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions, conditioned scatter plot with marginal densities, box and stem with matching theoretical distribution, and density with matching theoretical distribution.
Author: John Mount [aut, cre], Nina Zumel [aut], Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>

Diff between WVPlots versions 0.2.6 dated 2017-08-29 and 0.2.7 dated 2017-11-28

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Package rNOMADS updated to version 2.3.8 with previous version 2.3.7 dated 2017-10-24

Title: An Interface to the NOAA Operational Model Archive and Distribution System
Description: An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS, see <http://nomads.ncep.noaa.gov/> for more information) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of over 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in grib format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Author: Daniel C. Bowman [aut, cre]
Maintainer: Daniel C. Bowman <danny.c.bowman@gmail.com>

Diff between rNOMADS versions 2.3.7 dated 2017-10-24 and 2.3.8 dated 2017-11-28

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Package personalized updated to version 0.1.2 with previous version 0.1.1 dated 2017-10-25

Title: Estimation and Validation Methods for Subgroup Identification and Personalized Medicine
Description: Provides functions for fitting and validation of subgroup identification and personalized medicine models under the general subgroup identification framework of Chen et al. (2017) <doi:10.1111/biom.12676>. This package is intended for use for both randomized controlled trials and observational studies.
Author: Jared Huling [aut, cre], Aaron Potvien [ctb]
Maintainer: Jared Huling <jaredhuling@gmail.com>

Diff between personalized versions 0.1.1 dated 2017-10-25 and 0.1.2 dated 2017-11-28

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More information about personalized at CRAN
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New package ggFacetSample with initial version 1.0.0
Package: ggFacetSample
Title: Show Large Facet Dimensions by Sampling
Version: 1.0.0
Authors@R: c( person("Carl", "Pearson", email = "carl.ab.pearson@gmail.com", role = c("aut", "cre")), person("Very Good Research & Development, LLC", role = "cph") )
Description: Extending facet_grid(...) from 'ggplot2', 'ggFacetSample' provides a simple interface to sample from the values of large facet dimensions: facet_sample(..., sample_n, seed).
Depends: R (>= 3.2.1)
License: Apache License (>= 2.0)
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Imports: ggplot2 (>= 2.2.1), plyr (>= 1.8.4)
Date: 2017-11-24
URL: http://gitlab.com/vgrand/ggFacetSample
NeedsCompilation: no
Packaged: 2017-11-27 20:27:32 UTC; carlpearson
Author: Carl Pearson [aut, cre], Very Good Research & Development, LLC [cph]
Maintainer: Carl Pearson <carl.ab.pearson@gmail.com>
Repository: CRAN
Date/Publication: 2017-11-28 09:56:45 UTC

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Package dbmss updated to version 2.5-1 with previous version 2.4-0 dated 2017-03-26

Title: Distance-Based Measures of Spatial Structures
Description: Simple computation of spatial statistic functions of distance to characterize the spatial structures of mapped objects, including classical ones (Ripley's K and others) and more recent ones used by spatial economists (Duranton and Overman's Kd, Marcon and Puech's M). Relies on 'spatstat' for some core calculation.
Author: Eric Marcon [aut, cre], Gabriel Lang [aut], Stephane Traissac [aut], Florence Puech [aut]
Maintainer: Eric Marcon <eric.marcon@ecofog.gf>

Diff between dbmss versions 2.4-0 dated 2017-03-26 and 2.5-1 dated 2017-11-28

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Package Rfmtool (with last version 1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-03-19 1.2
2016-03-17 1.1

Permanent link

Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.