Fri, 01 Dec 2017

Package yaml updated to version 2.1.15 with previous version 2.1.14 dated 2016-11-12

Title: Methods to Convert R Data to YAML and Back
Description: Implements the 'libyaml' 'YAML' 1.1 parser and emitter (<http://pyyaml.org/wiki/LibYAML>) for R.
Author: Jeremy Stephens <jeremy.stephens@vanderbilt.edu>
Maintainer: Jeremy Stephens <jeremy.stephens@vanderbilt.edu>

Diff between yaml versions 2.1.14 dated 2016-11-12 and 2.1.15 dated 2017-12-01

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Package splines2 updated to version 0.2.7 with previous version 0.2.6 dated 2017-09-11

Title: Regression Spline Functions and Classes
Description: Constructs B-splines and its integral, monotone splines (M-splines) and its integral (I-splines), convex splines (C-splines), and their derivatives of given order. Piecewise constant basis is allowed for B-splines and M-splines. See De Boor (1978) <doi:10.1002/zamm.19800600129>, Ramsay (1988) <doi:10.1214/ss/1177012761>, and Meyer (2008) <doi:10.1214/08-AOAS167> for more information.
Author: Wenjie Wang [aut, cre], Jun Yan [aut]
Maintainer: Wenjie Wang <wenjie.2.wang@uconn.edu>

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Package plumber updated to version 0.4.4 with previous version 0.4.2 dated 2017-07-24

Title: An API Generator for R
Description: Gives the ability to automatically generate and serve an HTTP API from R functions using the annotations in the R documentation around your functions.
Author: Trestle Technology, LLC [aut], Jeff Allen [cre], Frans van Dunné [ctb], SmartBear Software [ctb, cph] (swagger-ui)
Maintainer: Jeff Allen <cran@trestletech.com>

Diff between plumber versions 0.4.2 dated 2017-07-24 and 0.4.4 dated 2017-12-01

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Package lrgs updated to version 0.5.3 with previous version 0.5.1 dated 2016-07-30

Title: Linear Regression by Gibbs Sampling
Description: Implements a Gibbs sampler to do linear regression with multiple covariates, multiple responses, Gaussian measurement errors on covariates and responses, Gaussian intrinsic scatter, and a covariate prior distribution which is given by either a Gaussian mixture of specified size or a Dirichlet process with a Gaussian base distribution.
Author: Adam Mantz
Maintainer: Adam Mantz <amantz@slac.stanford.edu>

Diff between lrgs versions 0.5.1 dated 2016-07-30 and 0.5.3 dated 2017-12-01

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Package htmlTable updated to version 1.11.0 with previous version 1.9 dated 2017-01-26

Title: Advanced Tables for Markdown/HTML
Description: Tables with state-of-the-art layout elements such as row spanners, column spanners, table spanners, zebra striping, and more. While allowing advanced layout, the underlying css-structure is simple in order to maximize compatibility with word processors such as 'MS Word' or 'LibreOffice'. The package also contains a few text formatting functions that help outputting text compatible with HTML/'LaTeX'.
Author: Max Gordon [aut, cre], Stephen Gragg [aut], Peter Konings [aut]
Maintainer: Max Gordon <max@gforge.se>

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Package h2o updated to version 3.16.0.2 with previous version 3.16.0.1 dated 2017-11-27

Title: R Interface for H2O
Description: R scripting functionality for H2O, the open source math engine for big data that computes parallel distributed machine learning algorithms such as generalized linear models, gradient boosting machines, random forests, and neural networks (deep learning) within various cluster environments.
Author: The H2O.ai team
Maintainer: Tom Kraljevic <tomk@0xdata.com>

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Package gdpc updated to version 1.0.3 with previous version 1.0.2 dated 2017-02-22

Title: Generalized Dynamic Principal Components
Description: Functions to compute the Generalized Dynamic Principal Components introduced in Peña and Yohai (2016) <DOI:10.1080/01621459.2015.1072542>.
Author: Daniel Peña <daniel.pena@uc3m.es>, Ezequiel Smucler <ezequiels.90@gmail.com>, Victor Yohai <vyohai@dm.uba.ar>
Maintainer: Ezequiel Smucler <ezequiels.90@gmail.com>

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Package EAinference updated to version 0.2.3 with previous version 0.2.2 dated 2017-11-13

Title: Estimator Augmentation and Simulation-Based Inference
Description: Estimator augmentation methods for statistical inference on high-dimensional data, as described in Zhou, Q. (2014) <arXiv:1401.4425v2> and Zhou, Q. and Min, S. (2017) <doi:10.1214/17-EJS1309>. It provides several simulation-based inference methods: (a) Gaussian and wild multiplier bootstrap for lasso, group lasso, scaled lasso, scaled group lasso and their de-biased estimators, (b) importance sampler for approximating p-values in these methods, (c) Markov chain Monte Carlo lasso sampler with applications in post-selection inference.
Author: Seunghyun Min [aut, cre], Qing Zhou [aut]
Maintainer: Seunghyun Min <seunghyun@ucla.edu>

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Package Cubist updated to version 0.2.1 with previous version 0.2.0 dated 2017-11-27

Title: Rule- And Instance-Based Regression Modeling
Description: Regression modeling using rules with added instance-based corrections.
Author: Max Kuhn [aut, cre], Weston Steve [ctb], Keefer Chris [ctb], Coulter Nathan [ctb], Ross Quinlan [aut] (Author of imported C code), Rulequest Research Pty Ltd. [cph] (Copyright holder of imported C code)
Maintainer: Max Kuhn <mxkuhn@gmail.com>

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Package NetworkInference updated to version 1.1.2 with previous version 1.1.1 dated 2017-07-18

Title: Inferring Latent Diffusion Networks
Description: This is an R implementation of the netinf algorithm (Gomez Rodriguez, Leskovec, and Krause, 2010)<doi:10.1145/1835804.1835933>. Given a set of events that spread between a set of nodes the algorithm infers the most likely stable diffusion network that is underlying the diffusion process.
Author: Fridolin Linder [aut, cre], Bruce Desmarais [ctb]
Maintainer: Fridolin Linder <fridolin.linder@gmail.com>

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New package whereport with initial version 0.1
Package: whereport
Title: Geolocalization of IATA Codes
Version: 0.1
Authors@R: person("Giulio Valentino", "Dalla Riva", email = "me@gvdallariva.net", role = c("aut", "cre"))
Description: Retrieve geographical information for airports using their IATA or ICAO codes.
Depends: R (>= 3.4.2)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Suggests: testthat (>= 1.0.2), covr (>= 3.0.1)
Imports: dplyr (>= 0.7.4)
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-11-30 16:58:05 UTC; gvdr
Author: Giulio Valentino Dalla Riva [aut, cre]
Maintainer: Giulio Valentino Dalla Riva <me@gvdallariva.net>
Repository: CRAN
Date/Publication: 2017-12-01 18:06:02 UTC

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Package SetMethods updated to version 2.3 with previous version 2.1 dated 2017-03-17

Title: Functions for Set-Theoretic Multi-Method Research and Advanced QCA
Description: Functions for performing set-theoretic multi-method research, QCA for clustered data, theory evaluation, Enhanced Standard Analysis, indirect calibration, radar visualisations. Additionally it includes data to replicate the examples in the book by C. Q. Schneider and C. Wagemann "Set Theoretic Methods for the Social Sciences", Cambridge University Press and in the online appendix.
Author: Juraj Medzihorsky [aut], Ioana-Elena Oana [aut, cre], Mario Quaranta [aut], Carsten Q. Schneider [aut]
Maintainer: Ioana-Elena Oana <oana_ioana-elena@phd.ceu.edu>

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New package sdols with initial version 1.3
Package: sdols
Type: Package
Title: Summarizing Distributions of Latent Structures
Version: 1.3
Date: 2017-12-01
Authors@R: c(person(given="David B.",family="Dahl",role=c("aut","cre"),email="dahl@stat.byu.edu"),person(given="Peter",family="Müller",role=c("aut"),email="pmueller@math.utexas.edu"))
URL: https://dahl.byu.edu
BugReports: https://dahl.byu.edu
Description: Summaries of distributions on clusterings and feature allocations are provided. Specifically, point estimates are obtained by the sequentially-allocated latent structure optimization (SALSO) algorithm to minimize squared error loss, absolute error loss, Binder loss, or the lower bound of the variation of information loss. Clustering uncertainty can be assessed with the confidence calculations and the associated plot.
Imports: rscala (>= 2.5.0), commonsMath (>= 1.1), stats
Depends: R (>= 3.1.0)
LazyData: TRUE
License: Apache License 2.0 | file LICENSE
Encoding: UTF-8
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-12-01 13:17:56 UTC; dahl
Author: David B. Dahl [aut, cre], Peter Müller [aut]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Repository: CRAN
Date/Publication: 2017-12-01 18:54:16 UTC

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Package RDS updated to version 0.8-1 with previous version 0.8-0 dated 2017-09-15

Title: Respondent-Driven Sampling
Description: Provides functionality for carrying out estimation with data collected using Respondent-Driven Sampling. This includes Heckathorn's RDS-I and RDS-II estimators as well as Gile's Sequential Sampling estimator. The package is part of the "RDS Analyst" suite of packages for the analysis of respondent-driven sampling data. See Gile and Handcock (2010) <doi:10.1111/j.1467-9531.2010.01223.x> and Gile and Handcock (2015) <doi:10.1111/rssa.12091>.
Author: Mark S. Handcock [aut, cre], Krista J. Gile [aut], Ian E. Fellows [aut], W. Whipple Neely [aut]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>

Diff between RDS versions 0.8-0 dated 2017-09-15 and 0.8-1 dated 2017-12-01

 DESCRIPTION                                 |   12 +-
 MD5                                         |  160 ++++++++++++++--------------
 NAMESPACE                                   |    1 
 R/MA.estimates.R                            |    3 
 R/MA.util.R                                 |    2 
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New package qCBA with initial version 0.3
Package: qCBA
Title: Quantitative Classification by Association Rules
Version: 0.3
Date: 2017-11-30
Author: Tomas Kliegr
Maintainer: Tomas Kliegr <kliegr@gmail.com>
Description: CBA postprocessing algorithm that creates smaller models for datasets containing quantitative (numerical) attributes. Article describing QCBA is published in Tomas Kliegr (2017) <arXiv:1711.10166>.
Depends: R (>= 2.7.0), arules, rJava (>= 0.5-0), arc (>= 1.1.2), methods
Suggests: arulesCBA (>= 1.1.2), rCBA (>= 0.0.2.9009)
SystemRequirements: Java (>= 8)
URL: https://github.com/kliegr/QCBA
BugReports: https://github.com/kliegr/QCBA/issues
License: AGPL-3
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-12-01 12:13:33 UTC; root
Repository: CRAN
Date/Publication: 2017-12-01 18:11:06 UTC

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New package netgwas with initial version 0.0.1-1
Package: netgwas
Type: Package
Title: Network-Based Genome Wide Association Studies
Version: 0.0.1-1
Author: Pariya Behrouzi and Ernst C. Wit
Maintainer: Pariya Behrouzi <pariya.behrouzi@gmail.com>
Depends: R (>= 3.1.0), Matrix, igraph, parallel
Imports: methods, glasso, MASS, RBGL, tmvtnorm, ggcorrplot, huge
Description: A multi-core R package that contains a set of tools based on undirected graphical models for accomplishing three important and interrelated goals in genetics: (1) linkage map construction, (2) reconstructing intra- and inter-chromosomal conditional interactions (linkage disequilibrium) network, and (3) exploring high-dimensional genotype-phenotype network and genotype-phenotype-environment interactions network. For this purpose, we use conditional (in)dependence relationships between variables. The netgwas package can deal with biparental inbreeding and outbreeding species with any ploidy level, namely diploid (2 sets of chromosomes), triploid (3 sets of chromosomes), tetraploid (4 sets of chromosomes) and so on. We target on high-dimensional data where number of variables p is larger than number of sample sizes (p >> n). The computations is memory-optimized using the sparse matrix output. The package is implemented the recent developments in Behrouzi and Wit (2017) <arXiv:1710.00894> and Behrouzi and Wit (2017) <arXiv:1710.01063> .
License: GPL-3
Date: 2017-11-24
NeedsCompilation: no
Packaged: 2017-12-01 12:56:17 UTC; Pariya
Repository: CRAN
Date/Publication: 2017-12-01 18:20:24 UTC

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New package ncmeta with initial version 0.0.1
Package: ncmeta
Title: Straightforward 'NetCDF' Metadata
Version: 0.0.1
Authors@R: c(person("Michael", "Sumner", email = "mdsumner@gmail.com", role = c("aut", "cre")), person("Tomas", "Remenyi", role = "ctb"), person("Ben", "Raymond", role = "ctb"))
Description: Extract metadata from 'NetCDF' data sources, these can be files, file handles or servers. This package leverages and extends the lower level functions of the 'RNetCDF' package providing a consistent set of functions that all return data frames. We introduce named concepts of 'grid', 'axis' and 'source' which are all meaningful entities without formal definition in the 'NetCDF' library <https://www.unidata.ucar.edu/software/netcdf/>. 'RNetCDF' matches the library itself with only the named concepts of 'variables', 'dimensions' and 'attributes'. 'ncmeta' provides a required framework for the in-development 'tidync' project <https://github.com/hypertidy/ncmeta>.
Depends: R (>= 3.3.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Imports: dplyr, rlang, RNetCDF, tibble
Suggests: testthat, covr
URL: https://github.com/hypertidy/ncmeta
BugReports: https://github.com/hypertidy/ncmeta/issues
ByteCompile: TRUE
NeedsCompilation: no
Packaged: 2017-12-01 12:24:36 UTC; mdsumner
Author: Michael Sumner [aut, cre], Tomas Remenyi [ctb], Ben Raymond [ctb]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Repository: CRAN
Date/Publication: 2017-12-01 18:16:57 UTC

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New package mlbgameday with initial version 0.0.1
Package: mlbgameday
Title: Tools to Gather Data from Major League Baseball Advanced Media (MLBAM)
Version: 0.0.1
Authors@R: person("Kris", "Eberwein", email = "eberwein@knights.ucf.edu", role = c("aut", "cre"))
Description: Multi-core processing of Gameday data from Major League Baseball Advanced Media <http://gd2.mlb.com/components/game/mlb/>. Additional tools to parallelize large data sets and write them to a database.
Depends: R (>= 3.3.3)
Imports: magrittr, xml2, dplyr, stringr, purrr, utils, stats, foreach, iterators, parallel, doParallel, DBI
Suggests: testthat, knitr, rmarkdown, pitchRx, viridis, ggplot2, plotly, RSQLite, dbplyr
License: MIT + file LICENSE
URL: https://github.com/keberwein/mlbgameday
BugReports: https://github.com/keberwein/mlbgameday/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-12-01 17:05:17 UTC; kriseberwein
Author: Kris Eberwein [aut, cre]
Maintainer: Kris Eberwein <eberwein@knights.ucf.edu>
Repository: CRAN
Date/Publication: 2017-12-01 18:40:19 UTC

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Package metaplot updated to version 0.2.7 with previous version 0.2.1 dated 2017-10-15

Title: Formalized Plots with Systematic Metadata
Description: Designs plots in terms of core structure. See 'example(metaplot)'. Primary arguments are (unquoted) column names; order and type (numeric or not) dictate the resulting plot. Specify any y variables, x variable, any groups variable, and any conditioning variables to metaplot() to generate density plots, boxplots, scatterplots, scatterplot matrices, or conditioned plots. Honors scalar column attributes 'label' and 'guide' where present to produce fully annotated plots using concise syntax. Attribute 'guide' is typically units, but may be encoded() to provide interpretations of categorical values (see 'encode' package). Utility unpack() transforms scalar column attributes to row values and pack() does the reverse, supporting tool-neutral storage of metadata along with primary data. Supports customizable aesthetics such as such as reference lines, unity lines, smooths, log transformation, and linear fits. Compact syntax and isolated metadata promote workflow scalability.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>

Diff between metaplot versions 0.2.1 dated 2017-10-15 and 0.2.7 dated 2017-12-01

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 61 files changed, 380 insertions(+), 1520 deletions(-)

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Package magick updated to version 1.6 with previous version 1.5 dated 2017-11-03

Title: Advanced Graphics and Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image processing library available. Supports many common formats (png, jpeg, tiff, pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc). All operations are vectorized via the Magick++ STL meaning they operate either on a single frame or a series of frames for working with layers, collages, or animation. In RStudio images are automatically previewed when printed to the console, resulting in an interactive editing environment. The latest version of the package includes a native graphics device for creating in-memory graphics or drawing onto images using pixel coordinates.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between magick versions 1.5 dated 2017-11-03 and 1.6 dated 2017-12-01

 DESCRIPTION             |   12 -
 MD5                     |  104 +++++++++-------
 NAMESPACE               |   21 +++
 NEWS                    |   22 +++
 R/EBImage.R             |only
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 R/analysis.R            |    3 
 R/animation.R           |    3 
 R/attributes.R          |    2 
 R/base.R                |   20 ---
 R/coder.R               |    2 
 R/color.R               |   18 +-
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More information about magick at CRAN
Permanent link

Package C50 updated to version 0.1.1 with previous version 0.1.0-24 dated 2015-03-09

Title: C5.0 Decision Trees and Rule-Based Models
Description: C5.0 decision trees and rule-based models for pattern recognition that extend the work of Quinlan (1993, ISBN:1-55860-238-0).
Author: Max Kuhn [aut, cre], Weston Steve [ctb], Culp Mark [ctb], Coulter Nathan [ctb], Ross Quinlan [aut] (Author of imported C code), RuleQuest Research [cph] (Copyright holder of imported C code), Rulequest Research Pty Ltd. [cph] (Copyright holder of imported C code)
Maintainer: Max Kuhn <mxkuhn@gmail.com>

Diff between C50 versions 0.1.0-24 dated 2015-03-09 and 0.1.1 dated 2017-12-01

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More information about C50 at CRAN
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Package vegan3d updated to version 1.1-1 with previous version 1.1-0 dated 2017-04-24

Title: Static and Dynamic 3D Plots for the 'vegan' Package
Description: Static and dynamic 3D plots to be used with ordination results and in diversity analysis, especially with the vegan package.
Author: Jari Oksanen [aut, cre], Roeland Kindt [aut], Gavin L. Simpson [aut]
Maintainer: Jari Oksanen <jari.oksanen@oulu.fi>

Diff between vegan3d versions 1.1-0 dated 2017-04-24 and 1.1-1 dated 2017-12-01

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Permanent link

Package vegan updated to version 2.4-5 with previous version 2.4-4 dated 2017-08-24

Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Michael Friendly, Roeland Kindt, Pierre Legendre, Dan McGlinn, Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs, Helene Wagner
Maintainer: Jari Oksanen <jari.oksanen@oulu.fi>

Diff between vegan versions 2.4-4 dated 2017-08-24 and 2.4-5 dated 2017-12-01

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More information about vegan at CRAN
Permanent link

Package HydeNet updated to version 0.10.6 with previous version 0.10.5 dated 2017-01-13

Title: Hybrid Bayesian Networks Using R and JAGS
Description: Facilities for easy implementation of hybrid Bayesian networks using R. Bayesian networks are directed acyclic graphs representing joint probability distributions, where each node represents a random variable and each edge represents conditionality. The full joint distribution is therefore factorized as a product of conditional densities, where each node is assumed to be independent of its non-descendents given information on its parent nodes. Since exact, closed-form algorithms are computationally burdensome for inference within hybrid networks that contain a combination of continuous and discrete nodes, particle-based approximation techniques like Markov Chain Monte Carlo are popular. We provide a user-friendly interface to constructing these networks and running inference using the 'rjags' package. Econometric analyses (maximum expected utility under competing policies, value of information) involving decision and utility nodes are also supported.
Author: Jarrod E. Dalton <daltonj@ccf.org> and Benjamin Nutter <benjamin.nutter@gmail.com>
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>

Diff between HydeNet versions 0.10.5 dated 2017-01-13 and 0.10.6 dated 2017-12-01

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Permanent link

Package geosapi updated to version 0.2-0 with previous version 0.1-0 dated 2017-02-22

Title: GeoServer REST API R Interface
Description: Provides an R interface to the GeoServer REST API, allowing to upload and publish data in a GeoServer web-application and expose data to OGC Web-Services. The package currently supports all CRUD (Create,Read,Update,Delete) operations on GeoServer workspaces, namespaces, datastores (stores of vector data), featuretypes, layers, styles, as well as vector data upload operations. For more information about the GeoServer REST API, see <http://docs.geoserver.org/stable/en/user/rest/>.
Author: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>

Diff between geosapi versions 0.1-0 dated 2017-02-22 and 0.2-0 dated 2017-12-01

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Package NestedCategBayesImpute updated to version 1.1.0 with previous version 1.0.0 dated 2016-11-17

Title: Modeling and Generating Synthetic Versions of Nested Categorical Data in the Presence of Impossible Combinations
Description: This tool set provides a set of functions to fit the nested Dirichlet process mixture of products of multinomial distributions (NDPMPM) model for nested categorical household data in the presence of impossible combinations. It has direct applications in generating synthetic nested household data.
Author: Quanli Wang, Olanrewaju Akande, Jingchen Hu, Jerry Reiter and Andres Barrientos
Maintainer: Quanli Wang <quanliwang20@hotmail.com>

Diff between NestedCategBayesImpute versions 1.0.0 dated 2016-11-17 and 1.1.0 dated 2017-12-01

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Package findpython updated to version 1.0.3 with previous version 1.0.2 dated 2017-03-15

Title: Functions to Find an Acceptable Python Binary
Description: Package designed to find an acceptable python binary.
Author: Trevor L Davis and Paul Gilbert.
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>

Diff between findpython versions 1.0.2 dated 2017-03-15 and 1.0.3 dated 2017-12-01

 DESCRIPTION                      |   12 ++--
 LICENSE                          |    2 
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Package filesstrings updated to version 2.0.0 with previous version 1.1.0 dated 2017-07-08

Title: Handy File and String Manipulation
Description: Convenient functions for moving files, deleting directories, and a variety of string operations that facilitate manipulating files and extracting information from strings.
Author: Rory Nolan [aut, cre, cph], Sergi Padilla-Parra [ths]
Maintainer: Rory Nolan <rorynoolan@gmail.com>

Diff between filesstrings versions 1.1.0 dated 2017-07-08 and 2.0.0 dated 2017-12-01

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New package Numero with initial version 1.0.3
Package: Numero
Type: Package
Title: Statistical Framework to Define Subgroups in Complex Datasets
Version: 1.0.3
Date: 2017-12-01
Authors@R: c(person("Song", "Gao", role = "aut"), person("Stefan", "Mutter", role = "aut"), person("Aaron E.", "Casey", role = "aut"), person("Ville-Petteri", "Makinen", role = c("aut", "cre"), email = "vpmakine@gmail.com"))
Description: High-dimensional datasets that do not exhibit a clear intrinsic clustered structure pose a challenge to conventional clustering algorithms. For this reason, we developed an unsupervised framework that helps scientists to better subgroup their datasets based on visual cues [Makinen V-P et al. (2011) J Proteome Res 11:1782-1790, <doi:10.1021/pr201036j>]. The framework includes the necessary functions to import large data files, to construct a self-organizing map of the data, to evaluate the statistical significance of the observed data patterns, and to visualize the results in scalable vector graphics.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.4)
LinkingTo: Rcpp
VignetteBuilder: knitr
Suggests: knitr, rmarkdown
NeedsCompilation: yes
RoxygenNote: 6.0.1
Packaged: 2017-11-25 11:41:24 UTC; stefan.mutter
Author: Song Gao [aut], Stefan Mutter [aut], Aaron E. Casey [aut], Ville-Petteri Makinen [aut, cre]
Maintainer: Ville-Petteri Makinen <vpmakine@gmail.com>
Repository: CRAN
Date/Publication: 2017-12-01 11:48:16 UTC

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New package perturbR with initial version 0.1.0
Package: perturbR
Type: Package
Title: Random Perturbation of Count Matrices
Version: 0.1.0
Author: KM Gates [aut, cre]
Maintainer: KM Gates <gateskm@email.unc.edu>
Description: The perturbR() function incrementally perturbs network edges and compares the resulting community detection solutions from the rewired networks with the solution found for the original network. These comparisons aid in understanding the stability of the original solution. The package requires symmetric, weighted (specifically, count) matrices/networks.
Imports: mcclust, dils, igraph, ggplot2
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-11-30 23:20:01 UTC; gateslab
Repository: CRAN
Date/Publication: 2017-12-01 10:02:41 UTC

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Package velox updated to version 0.2.0 with previous version 0.1.0 dated 2016-08-25

Title: Fast Raster Manipulation and Extraction
Description: C++ accelerated raster manipulation and extraction.
Author: Philipp Hunziker
Maintainer: Philipp Hunziker <hunzikp@gmail.com>

Diff between velox versions 0.1.0 dated 2016-08-25 and 0.2.0 dated 2017-12-01

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 NAMESPACE                         |   32 +++
 NEWS.md                           |   35 ++++
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New package neurovault with initial version 0.5.4
Package: neurovault
Version: 0.5.4
Title: 'Neurovault' Database API Access
Description: Uses 'Neurovault' API <https://neurovault.org/api-docs> to download statistical maps of the human brain stored on that platform.
Authors@R: person(given = "John", family = "Muschelli", role = c("aut", "cre"), email = "muschellij2@gmail.com")
License: GPL-3
Imports: httr
Suggests: knitr, rmarkdown, covr, testthat, neurobase
Encoding: UTF-8
LazyData: true
ByteCompile: true
Type: Package
Maintainer: John Muschelli <muschellij2@gmail.com>
VignetteBuilder: knitr
URL: https://github.com/muschellij2/neurovault
BugReports: https://github.com/muschellij2/neurovault/issues
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-11-30 19:27:50 UTC; johnmuschelli
Author: John Muschelli [aut, cre]
Repository: CRAN
Date/Publication: 2017-12-01 09:28:58 UTC

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Package smbinning updated to version 0.5 with previous version 0.4 dated 2017-10-22

Title: Scoring Modeling and Optimal Binning
Description: A set of functions to build a scoring model from beginning to end, leading the user to follow an efficient and organized development process, reducing significantly the time spent on data exploration, variable selection, feature engineering and binning, among other recurrent tasks. The package also incorporates scaling capabilities that transforms logistic coefficients into points for a better business understanding and calculates and visualizes classic performance metrics of a classification model.
Author: Herman Jopia
Maintainer: Herman Jopia <hjopia@gmail.com>

Diff between smbinning versions 0.4 dated 2017-10-22 and 0.5 dated 2017-12-01

 DESCRIPTION                    |   12 
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 21 files changed, 571 insertions(+), 586 deletions(-)

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Package bcs (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-04-04 1.0.0

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Package alR (with last version 2.2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-09-01 2.2.0

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Package FHDI (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-05-18 1.0

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Package RGraphM (with last version 0.1.11) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-09-06 0.1.11
2017-08-26 0.1.10
2017-08-21 0.1.9
2017-08-09 0.1.8

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Package treeHFM (with last version 1.0.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-09-18 1.0.3
2016-09-06 1.0.2
2016-07-08 1.0.0.1
2016-06-06 1.0.0

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Package rENA (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-10-03 0.1.0

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Package covTestR (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-11-24 0.1.1
2017-11-22 0.1.0

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