Title: Karl Broman's R Code
Description: Miscellaneous R functions, including functions related to
graphics (mostly for base graphics), permutation tests, running
mean/median, and general utilities.
Author: Karl W Broman <kbroman@biostat.wisc.edu>, with contributions from Aimee
Teo Broman
Maintainer: Karl W Broman <kbroman@biostat.wisc.edu>
Diff between broman versions 0.65-4 dated 2017-05-28 and 0.67-4 dated 2017-12-08
broman-0.65-4/broman/inst/STATUS.txt |only broman-0.67-4/broman/DESCRIPTION | 9 - broman-0.67-4/broman/MD5 | 36 ++++-- broman-0.67-4/broman/NAMESPACE | 8 + broman-0.67-4/broman/NEWS |only broman-0.67-4/broman/R/align_stuff.R |only broman-0.67-4/broman/R/dotplot.R | 14 ++ broman-0.67-4/broman/R/get_precision.R |only broman-0.67-4/broman/R/grayplot.R | 65 +++++------ broman-0.67-4/broman/R/grayplot_na.R |only broman-0.67-4/broman/R/holmans_triangle.R | 19 ++- broman-0.67-4/broman/R/pick_more_precise.R |only broman-0.67-4/broman/R/theme_karl.R | 2 broman-0.67-4/broman/R/vec2string.R |only broman-0.67-4/broman/data/numbers-cap.RData |binary broman-0.67-4/broman/data/numbers.RData |binary broman-0.67-4/broman/man/align_vectors.Rd |only broman-0.67-4/broman/man/get_precision.Rd |only broman-0.67-4/broman/man/grayplot.Rd | 35 +++-- broman-0.67-4/broman/man/grayplot_na.Rd |only broman-0.67-4/broman/man/pick_more_precise.Rd |only broman-0.67-4/broman/man/triplot.Rd | 9 + broman-0.67-4/broman/man/vec2string.Rd |only broman-0.67-4/broman/tests/testthat/test-align_stuff.R |only broman-0.67-4/broman/tests/testthat/test-get_precision.R |only broman-0.67-4/broman/tests/testthat/test-pick_more_precise.R |only broman-0.67-4/broman/tests/testthat/test-vec2string.R |only 27 files changed, 125 insertions(+), 72 deletions(-)
Title: Maximum Likelihood Analysis of Animal Movement Behavior Using
Multivariate Hidden Markov Models
Description: Extended tools for analyzing telemetry data using generalized hidden Markov models. These include data pre-processing and visualization, fitting HMMs to location and auxiliary biotelemetry or environmental data, biased and correlated random walk movement models, multiple imputation for incorporating location measurement error and missing data, user-specified design matrices and constraints for covariate modelling of parameters, decoding of the state process, visualization of fitted models, model checking and selection, and simulation. See McClintock and Michelot (2017) <arXiv:1710.03786>.
Author: Brett McClintock, Theo Michelot
Maintainer: Brett McClintock <brett.mcclintock@noaa.gov>
Diff between momentuHMM versions 1.2.0 dated 2017-10-20 and 1.3.0 dated 2017-12-08
momentuHMM-1.2.0/momentuHMM/vignettes/plot_sesResults2.pdf |only momentuHMM-1.3.0/momentuHMM/DESCRIPTION | 14 - momentuHMM-1.3.0/momentuHMM/MD5 | 105 ++++---- momentuHMM-1.3.0/momentuHMM/NAMESPACE | 7 momentuHMM-1.3.0/momentuHMM/NEWS | 23 + momentuHMM-1.3.0/momentuHMM/R/CIreal.R | 2 momentuHMM-1.3.0/momentuHMM/R/MIpool.R | 2 momentuHMM-1.3.0/momentuHMM/R/allProbs.R | 4 momentuHMM-1.3.0/momentuHMM/R/checkInputs.R | 10 momentuHMM-1.3.0/momentuHMM/R/crawlWrap.R | 21 + momentuHMM-1.3.0/momentuHMM/R/fitHMM.R | 8 momentuHMM-1.3.0/momentuHMM/R/getParDM.R | 2 momentuHMM-1.3.0/momentuHMM/R/getSplineDM.R | 2 momentuHMM-1.3.0/momentuHMM/R/logBeta.R | 5 momentuHMM-1.3.0/momentuHMM/R/n2w.R | 40 ++- momentuHMM-1.3.0/momentuHMM/R/plotPR.R | 8 momentuHMM-1.3.0/momentuHMM/R/plot_crwData.R | 8 momentuHMM-1.3.0/momentuHMM/R/plot_momentuHMM.R | 1 momentuHMM-1.3.0/momentuHMM/R/prepData.R | 48 +++- momentuHMM-1.3.0/momentuHMM/R/pseudoRes.R | 12 - momentuHMM-1.3.0/momentuHMM/R/simData.R | 117 ++++++++-- momentuHMM-1.3.0/momentuHMM/R/w2n.R | 37 ++- momentuHMM-1.3.0/momentuHMM/inst/CITATION | 4 momentuHMM-1.3.0/momentuHMM/inst/doc/momentuHMM.R | 62 +++++ momentuHMM-1.3.0/momentuHMM/inst/doc/momentuHMM.Rnw | 106 ++++++++- momentuHMM-1.3.0/momentuHMM/inst/doc/momentuHMM.pdf |binary momentuHMM-1.3.0/momentuHMM/man/fitHMM.Rd | 4 momentuHMM-1.3.0/momentuHMM/man/prepData.Rd | 20 + momentuHMM-1.3.0/momentuHMM/man/simData.Rd | 25 +- momentuHMM-1.3.0/momentuHMM/src/nLogLike.cpp | 4 momentuHMM-1.3.0/momentuHMM/tests/testthat/Rplots.pdf |binary momentuHMM-1.3.0/momentuHMM/tests/testthat/test_nLogLike.R | 46 +++ momentuHMM-1.3.0/momentuHMM/vignettes/elephant_plotSat.png |binary momentuHMM-1.3.0/momentuHMM/vignettes/groupExample.R |only momentuHMM-1.3.0/momentuHMM/vignettes/master.bib | 6 momentuHMM-1.3.0/momentuHMM/vignettes/momentuHMM-concordance.tex | 5 momentuHMM-1.3.0/momentuHMM/vignettes/momentuHMM.Rnw | 106 ++++++++- momentuHMM-1.3.0/momentuHMM/vignettes/plot_elephantResults001.pdf |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_elephantResults002.pdf |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_elephantResults009.pdf |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_elephantResults010.pdf |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_elephantResults012.pdf |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_elephantResults013.pdf |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_elephantResults015.pdf |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_elephantResults016.pdf |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_elephantResults017.pdf |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_groupExample001.pdf |only momentuHMM-1.3.0/momentuHMM/vignettes/plot_groupExampleCentroid001.pdf |only momentuHMM-1.3.0/momentuHMM/vignettes/plot_groupExampleResults007.pdf |only momentuHMM-1.3.0/momentuHMM/vignettes/plot_groupExampleResults008.pdf |only momentuHMM-1.3.0/momentuHMM/vignettes/plot_harbourSeal.png |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_harbourSealResults021.pdf |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_nfsResults.pdf |binary momentuHMM-1.3.0/momentuHMM/vignettes/plot_sesResults2.png |only momentuHMM-1.3.0/momentuHMM/vignettes/turtleExample.R | 2 momentuHMM-1.3.0/momentuHMM/vignettes/vignette_examples.R | 30 ++ momentuHMM-1.3.0/momentuHMM/vignettes/vignette_inputs.RData |binary 57 files changed, 718 insertions(+), 178 deletions(-)
Title: Latent Environmental & Genetic InTeraction (LEGIT) Model
Description: Constructs genotype x environment interaction (GxE) models where
G is a weighted sum of genetic variants (genetic score) and E is a weighted
sum of environments (environmental score) using the alternating optimization algorithm
by Jolicoeur-Martineau et al. (2017) <arXiv:1703.08111>. This approach has greatly
enhanced predictive power over traditional GxE models which include only a single
genetic variant and a single environmental exposure. Although this approach was
originally made for GxE modelling, it is flexible and does not require the use of
genetic and environmental variables. It can also handle more than 2 latent variables
(rather than just G and E) and 3-way interactions or more. The LEGIT model produces
highly interpretable results and is very parameter-efficient thus it can even be
used with small sample sizes (n < 250). Tools to determine the type of interaction
(vantage sensitivity, diathesis-stress or differential susceptibility), with any
number of genetic variants or environments, are available <10.17605/OSF.IO/27UW8>.
Author: Alexia Jolicoeur-Martineau <alexia.jolicoeur-martineau@mail.mcgill.ca>
Maintainer: Alexia Jolicoeur-Martineau <alexia.jolicoeur-martineau@mail.mcgill.ca>
Diff between LEGIT versions 1.1.1 dated 2017-05-21 and 1.2.0 dated 2017-12-08
DESCRIPTION | 17 MD5 | 56 + NAMESPACE | 10 R/LEGIT.R | 1237 ++++++++++++++++++++++++++++++++++++++---- R/rGE.R |only build/vignette.rds |binary inst/doc/GxE_testing.R |only inst/doc/GxE_testing.Rmd |only inst/doc/GxE_testing.html |only inst/doc/LEGIT.R | 12 inst/doc/LEGIT.Rmd | 54 + inst/doc/LEGIT.html | 127 ++-- man/GxE_interaction_RoS.Rd |only man/GxE_interaction_test.Rd |only man/IMLEGIT.Rd | 8 man/IMLEGIT_cv.Rd | 12 man/LEGIT.Rd | 24 man/LEGIT_cv.Rd | 19 man/backward_step.Rd | 6 man/backward_step_IM.Rd | 4 man/bootstrap_var_select.Rd | 12 man/example_with_crossover.Rd |only man/forward_step.Rd | 4 man/forward_step_IM.Rd | 5 man/genetic_var_select.Rd |only man/longitudinal_folds.Rd | 4 man/nes_var_select.Rd |only man/plot.LEGIT.Rd |only man/predict.IMLEGIT.Rd | 2 man/rGE.IMLEGIT.Rd |only man/rGE.LEGIT.Rd |only man/rGE.Rd |only man/stepwise_search.Rd | 17 man/stepwise_search_IM.Rd | 16 vignettes/GxE_testing.Rmd |only vignettes/LEGIT.Rmd | 54 + 36 files changed, 1441 insertions(+), 259 deletions(-)
Title: Analysis of Ecotoxicology
Description: A simple approach to using a probit or logit analysis to calculate
lethal concentration (LC) or time (LT) and the appropriate fiducial
confidence limits desired for selected LC or LT for
ecotoxicology studies (Finney 1971; Wheeler et al. 2006;
Robertson et al. 2007). The simplicity of 'ecotox' comes from the
syntax it implies within its functions which are similar to functions
like glm() and lm(). In addition to the simplicity of the syntax,
a comprehensive data frame is produced which gives the user a
predicted LC or LT value for the desired level and a suite of important
parameters such as fiducial confidence limits and slope.
Finney, D.J. (1971, ISBN: 052108041X);
Wheeler, M.W., Park, R.M., and Bailer, A.J. (2006) <doi:10.1897/05-320R.1>;
Robertson, J.L., Savin, N.E., Russell, R.M., and Preisler, H.K.
(2007, ISBN: 0849323312).
Author: Benjamin Hlina [aut, cre]
Maintainer: Benjamin Hlina <benjamin.hlina@gmail.com>
Diff between ecotox versions 1.1.0 dated 2017-10-24 and 1.3.0 dated 2017-12-08
DESCRIPTION | 14 - MD5 | 29 +- NAMESPACE | 4 R/LCx.R | 540 ++++++++++++++++++++++++++++++++++++++++++++++++----- R/LTx.R | 474 +++++++++++++++++++++++++++++++++++++++++++--- README.md | 39 ++- inst/CITATION | 8 man/LC.Rd | 76 ------- man/LC_logit.Rd |only man/LC_probit.Rd |only man/LT.Rd | 24 -- man/LT_logit.Rd |only man/LT_probit.Rd |only man/lampreytime.Rd | 16 - man/lampreytox.Rd | 16 - tests |only 16 files changed, 1027 insertions(+), 213 deletions(-)
Title: An Arsenal of 'R' Functions for Large-Scale Statistical
Summaries
Description: An Arsenal of 'R' functions for large-scale statistical summaries,
which are streamlined to work within the latest reporting tools in 'R' and
'RStudio' and which use formulas and versatile summary statistics for summary
tables and models. The primary functions include tableby(), a Table-1-like
summary of multiple variable types 'by' the levels of a categorical
variable; modelsum(), which performs simple model fits on the same endpoint
for many variables (univariate or adjusted for standard covariates);
freqlist(), a powerful frequency table across many categorical variables;
compare.data.frame(), the S3 method for comparing data.frames; and
write2(), a function to output tables to a document.
Author: Ethan Heinzen [aut, cre],
Jason Sinnwell [aut],
Elizabeth Atkinson [aut],
Tina Gunderson [aut],
Gregory Dougherty [aut],
Patrick Votruba [ctb],
Ryan Lennon [ctb],
Andrew Hanson [ctb],
Krista Goergen [ctb],
Emily Lundt [ctb],
Brendan Broderick [ctb]
Maintainer: Ethan Heinzen <heinzen.ethan@mayo.edu>
Diff between arsenal versions 0.6.0 dated 2017-09-20 and 0.6.1 dated 2017-12-08
DESCRIPTION | 8 MD5 | 22 - NEWS.md | 7 R/tableby.internal.R | 18 R/tableby.stats.R | 2 inst/doc/compare.html | 65 +-- inst/doc/freqlist.html | 16 inst/doc/labels.html | 30 - inst/doc/modelsum.html | 902 +++++++++++++++++++++---------------------- inst/doc/tableby.html | 150 +++---- inst/doc/write2.html | 72 +-- tests/testthat/test_write2.R | 46 +- 12 files changed, 662 insertions(+), 676 deletions(-)
Title: Constrained Inference for Linear Mixed Effects Models
Description: Estimation and inference for linear models where some or all of the
fixed-effects coefficients are subject to order restrictions. This package uses
the robust residual bootstrap methodology for inference, and can handle some
structure in the residual variance matrix.
Author: Casey M. Jelsema, Shyamal D. Peddada
Maintainer: Casey M. Jelsema <jelsema.casey@gmail.com>
Diff between CLME versions 2.0-6 dated 2016-11-07 and 2.0-8 dated 2017-12-08
CLME-2.0-6/CLME/man/model.frame.clme.Rd |only CLME-2.0-8/CLME/DESCRIPTION | 12 - CLME-2.0-8/CLME/MD5 | 96 ++++++------- CLME-2.0-8/CLME/NAMESPACE | 2 CLME-2.0-8/CLME/NEWS | 10 + CLME-2.0-8/CLME/R/00Package.r | 4 CLME-2.0-8/CLME/R/clme.r | 91 ++++++------ CLME-2.0-8/CLME/R/clme_resids.r | 7 CLME-2.0-8/CLME/R/plot.clme.r | 5 CLME-2.0-8/CLME/R/resid_boot.r | 7 CLME-2.0-8/CLME/R/shiny_clme.r | 213 ++++++++++++++++++++++-------- CLME-2.0-8/CLME/R/summary_clme.r | 6 CLME-2.0-8/CLME/R/utilities.r | 158 ++++++++++------------ CLME-2.0-8/CLME/data/rat.blood.csv.gz |only CLME-2.0-8/CLME/data/rat.blood.rda |binary CLME-2.0-8/CLME/man/AIC.clme.Rd | 1 CLME-2.0-8/CLME/man/BIC.clme.Rd | 1 CLME-2.0-8/CLME/man/CLME-package.Rd | 13 - CLME-2.0-8/CLME/man/VarCorr.Rd | 3 CLME-2.0-8/CLME/man/as.clme.Rd | 3 CLME-2.0-8/CLME/man/clme.Rd | 17 -- CLME-2.0-8/CLME/man/clme_em.Rd | 3 CLME-2.0-8/CLME/man/clme_resids.Rd | 7 CLME-2.0-8/CLME/man/confint.Rd | 1 CLME-2.0-8/CLME/man/create.constraints.Rd | 1 CLME-2.0-8/CLME/man/fibroid.Rd | 1 CLME-2.0-8/CLME/man/fixef.clme.Rd | 16 +- CLME-2.0-8/CLME/man/formula.clme.Rd | 1 CLME-2.0-8/CLME/man/logLik.clme.Rd | 1 CLME-2.0-8/CLME/man/lrt.stat.Rd | 1 CLME-2.0-8/CLME/man/minque.Rd | 1 CLME-2.0-8/CLME/man/model.matrix.clme.Rd | 1 CLME-2.0-8/CLME/man/model_terms_clme.Rd | 5 CLME-2.0-8/CLME/man/nobs.clme.Rd | 1 CLME-2.0-8/CLME/man/plot.clme.Rd | 1 CLME-2.0-8/CLME/man/plot.summary.clme.Rd | 1 CLME-2.0-8/CLME/man/print.clme.Rd | 1 CLME-2.0-8/CLME/man/print.summary.clme.Rd | 1 CLME-2.0-8/CLME/man/print.varcorr_clme.Rd | 1 CLME-2.0-8/CLME/man/ranef.Rd | 1 CLME-2.0-8/CLME/man/ranef.clme.Rd | 4 CLME-2.0-8/CLME/man/rat.blood.Rd | 1 CLME-2.0-8/CLME/man/resid_boot.Rd | 8 - CLME-2.0-8/CLME/man/residuals.clme.Rd | 1 CLME-2.0-8/CLME/man/shiny_clme.Rd | 9 - CLME-2.0-8/CLME/man/sigma.clme.Rd | 1 CLME-2.0-8/CLME/man/sigma.summary.clme.Rd | 1 CLME-2.0-8/CLME/man/summary.clme.Rd | 1 CLME-2.0-8/CLME/man/vcov.clme.Rd | 1 CLME-2.0-8/CLME/man/w.stat.Rd | 1 50 files changed, 387 insertions(+), 336 deletions(-)
Title: Total Variation Regularization
Description: Provides tools for denoising noisy signal and images via
Total Variation Regularization. Reducing the total variation of
the given signal is known to remove spurious detail while preserving
essential structural details. For the seminal work on the topic,
see Rudin et al (1992) <doi:10.1016/0167-2789(92)90242-F>.
Author: Kisung You [aut, cre] (0000-0002-8584-459X)
Maintainer: Kisung You <kyou@nd.edu>
Diff between tvR versions 0.1.0 dated 2017-10-24 and 0.1.1 dated 2017-12-08
DESCRIPTION | 14 ++++++++------ MD5 | 18 ++++++++++-------- NAMESPACE | 1 + R/collection.signal.R | 2 ++ R/denoise1.R | 7 +++++-- R/denoise2.R | 7 +++++-- R/package-tvR.R | 1 + build |only inst |only man/denoise1.Rd | 4 ++-- man/denoise2.Rd | 4 ++-- 11 files changed, 36 insertions(+), 22 deletions(-)
Title: Randomized Singular Value Decomposition
Description: Low-rank matrix decompositions are fundamental tools and widely used for data
analysis, dimension reduction, and data compression. Classically, highly accurate
deterministic matrix algorithms are used for this task. However, the emergence of
large-scale data has severely challenged our computational ability to analyze big data.
The concept of randomness has been demonstrated as an effective strategy to quickly produce
approximate answers to familiar problems such as the singular value decomposition (SVD).
The rsvd package provides several randomized matrix algorithms such as the randomized
singular value decomposition (rsvd), randomized principal component analysis (rpca),
randomized robust principal component analysis (rrpca), randomized interpolative
decomposition (rid), and the randomized CUR decomposition (rcur). In addition several plot
functions are provided.
Author: N. Benjamin Erichson [aut, cre]
Maintainer: N. Benjamin Erichson <erichson@uw.edu>
Diff between rsvd versions 0.6 dated 2016-07-29 and 0.9 dated 2017-12-08
rsvd-0.6/rsvd/R/reigen.R |only rsvd-0.6/rsvd/man/reigen.Rd |only rsvd-0.6/rsvd/tests/testthat/test_reigen.R |only rsvd-0.9/rsvd/DESCRIPTION | 32 - rsvd-0.9/rsvd/MD5 | 65 +- rsvd-0.9/rsvd/NAMESPACE | 41 - rsvd-0.9/rsvd/R/digits.R |only rsvd-0.9/rsvd/R/ggbiplot.R | 352 +++++++------ rsvd-0.9/rsvd/R/ggcorplot.R |only rsvd-0.9/rsvd/R/ggindplot.R |only rsvd-0.9/rsvd/R/ggscreeplot.R |only rsvd-0.9/rsvd/R/plots.R | 208 +------- rsvd-0.9/rsvd/R/rcur.R |only rsvd-0.9/rsvd/R/rid.R |only rsvd-0.9/rsvd/R/rpca.R | 642 +++++++++++-------------- rsvd-0.9/rsvd/R/rqb.R |only rsvd-0.9/rsvd/R/rrpca.R | 479 +++++++++--------- rsvd-0.9/rsvd/R/rsvd.R | 515 +++++++++----------- rsvd-0.9/rsvd/R/tiger.R | 49 - rsvd-0.9/rsvd/R/wrapper_function.R | 63 +- rsvd-0.9/rsvd/data/datalist | 3 rsvd-0.9/rsvd/data/digits.RData |only rsvd-0.9/rsvd/man/digits.Rd |only rsvd-0.9/rsvd/man/ggbiplot.Rd | 101 ++- rsvd-0.9/rsvd/man/ggcorplot.Rd | 78 +-- rsvd-0.9/rsvd/man/ggindplot.Rd |only rsvd-0.9/rsvd/man/ggscreeplot.Rd | 61 +- rsvd-0.9/rsvd/man/plot.rpca.Rd | 58 +- rsvd-0.9/rsvd/man/rcur.Rd |only rsvd-0.9/rsvd/man/rid.Rd |only rsvd-0.9/rsvd/man/rpca.Rd | 298 ++++------- rsvd-0.9/rsvd/man/rqb.Rd |only rsvd-0.9/rsvd/man/rrpca.Rd | 224 +++----- rsvd-0.9/rsvd/man/rsvd.Rd | 225 +++----- rsvd-0.9/rsvd/man/tiger.Rd | 58 +- rsvd-0.9/rsvd/tests/testthat/test_cur.R |only rsvd-0.9/rsvd/tests/testthat/test_dependency.R | 32 - rsvd-0.9/rsvd/tests/testthat/test_id.R |only rsvd-0.9/rsvd/tests/testthat/test_rcur.R |only rsvd-0.9/rsvd/tests/testthat/test_rid.R |only rsvd-0.9/rsvd/tests/testthat/test_rpca.R | 528 ++++++++++---------- rsvd-0.9/rsvd/tests/testthat/test_rqb.R |only rsvd-0.9/rsvd/tests/testthat/test_rrpca.R | 186 +++---- rsvd-0.9/rsvd/tests/testthat/test_rsvd.R | 411 ++++++++-------- 44 files changed, 2276 insertions(+), 2433 deletions(-)
Title: Penalty Learning
Description: Implementations of algorithms from
Learning Sparse Penalties for Change-point Detection
using Max Margin Interval Regression, by
Hocking, Rigaill, Vert, Bach
<http://proceedings.mlr.press/v28/hocking13.html>
published in proceedings of ICML2013.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between penaltyLearning versions 2017.07.11 dated 2017-07-11 and 2017.12.08 dated 2017-12-08
penaltyLearning-2017.07.11/penaltyLearning/build |only penaltyLearning-2017.07.11/penaltyLearning/inst |only penaltyLearning-2017.07.11/penaltyLearning/vignettes |only penaltyLearning-2017.12.08/penaltyLearning/DESCRIPTION | 10 ++--- penaltyLearning-2017.12.08/penaltyLearning/MD5 | 19 +++------- penaltyLearning-2017.12.08/penaltyLearning/NEWS | 17 ++++++++ penaltyLearning-2017.12.08/penaltyLearning/R/IntervalRegression.R | 3 + penaltyLearning-2017.12.08/penaltyLearning/R/labelError.R | 2 - penaltyLearning-2017.12.08/penaltyLearning/R/modelSelection.R | 4 +- penaltyLearning-2017.12.08/penaltyLearning/man/labelError.Rd | 2 - penaltyLearning-2017.12.08/penaltyLearning/man/modelSelectionC.Rd | 4 +- 11 files changed, 37 insertions(+), 24 deletions(-)
More information about penaltyLearning at CRAN
Permanent link
Title: Functions for the Logitnormal Distribution
Description: Density, distribution, quantile and random generation function for the logitnormal distribution. Estimation of the mode and the first two moments. Estimation of distribution parameters.
Author: Thomas Wutzler
Maintainer: Thomas Wutzler <twutz@bgc-jena.mpg.de>
Diff between logitnorm versions 0.8.34 dated 2017-03-14 and 0.8.35 dated 2017-12-08
DESCRIPTION | 14 MD5 | 37 - NAMESPACE | 8 NEWS.md | 3 R/logitnorm.R | 908 ++++++++++++++++++------------------ build/vignette.rds |binary inst/doc/logitnorm.R |only inst/doc/logitnorm.Rmd | 268 +++++----- inst/doc/logitnorm.html | 10 inst/genData/_genPackage.R | 38 - inst/genData/logitnorm-package.Rd | 110 ++-- inst/unitTests/runitLogitnorm.R | 298 +++++------ inst/unitTests/runitdlogitnormLog.R | 44 - man/dlogitnorm.Rd | 58 +- man/logitnorm-package.Rd | 114 ++-- man/twCoefLogitnormMLE.Rd | 72 +- man/twCoefLogitnormMLEFlat.Rd | 40 - man/twSigmaLogitnorm.Rd | 60 +- tests/doRUnit.R | 53 +- vignettes/logitnorm.Rmd | 268 +++++----- 20 files changed, 1204 insertions(+), 1199 deletions(-)
Title: Interactive, Complex Heatmaps
Description: Make complex, interactive heatmaps. 'iheatmapr' includes a modular
system for iteratively building up complex heatmaps, as well as the
iheatmap() function for making relatively standard heatmaps.
Author: Alicia Schep [aut, cre] (orcid.org/0000-0002-3915-0618),
Sarah Kummerfeld [aut] (orcid.org/0000-0002-0089-2358),
Genentech [cph],
Andee Kaplan [rev] (Reviewer for rOpensci review process
https://github.com/ropensci/onboarding/issues/107),
Carl Ganz [rev] (Reviewer for rOpensci review process
https://github.com/ropensci/onboarding/issues/107),
Alex Johnson [ctb] (plotly.js library),
Étienne Tétreault-Pinard [ctb] (plotly.js library),
Mikola Lysenko [ctb] (plotly.js library),
Ricky Reusser [ctb] (plotly.js library),
Robert Monfera [ctb] (plotly.js library),
Nicolas Riesco [ctb] (plotly.js library),
Miklós Tusz [ctb] (plotly.js library),
Chelsea Douglas [ctb] (plotly.js library),
Ben Postlethwaite [ctb] (plotly.js library),
Chris Parmer [ctb] (plotly.js library),
Alex Vados [ctb] (plotly.js library),
Plotly [cph] (plotly.js library)
Maintainer: Alicia Schep <aschep@gmail.com>
Diff between iheatmapr versions 0.4.2 dated 2017-11-11 and 0.4.3 dated 2017-12-08
DESCRIPTION | 56 ++++++++++++++++++++++------------------ MD5 | 8 ++--- NEWS.md | 4 ++ R/AllClasses.R | 5 --- inst/doc/iheatmapr-minimal.html | 4 +- 5 files changed, 43 insertions(+), 34 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modelling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.3.8 dated 2017-11-13 and 0.3.8.1 dated 2017-12-08
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/Dependence.R | 15 ++++++++++++--- R/Regression.R | 9 ++++----- inst/doc/NNSvignette_Clustering_and_Regression.html | 9 ++++----- 5 files changed, 28 insertions(+), 21 deletions(-)
Title: Detection of Isotope Pattern of a Mass Spectrometric Measurement
Description: Provides a low-level interface for a deisotoper container
implemented in the 'Java' programming language and means of S3 helper
functions for plotting and debugging isotopes of mass spectrometric data.
The deisotoper algorithm detects and aggregates peaks which belong to the
same isotopic cluster of a given mass spectrum.
Author: Christian Panse [cre, aut] (0000-0003-1975-3064),
Lucas Schmidt [ctb, aut] (0000-0003-4496-0487),
Witold E. Wolski [ctb, aut] (0000-0002-6468-120X)
Maintainer: Christian Panse <cp@fgcz.ethz.ch>
Diff between deisotoper versions 0.0.1 dated 2017-11-26 and 0.0.2 dated 2017-12-08
deisotoper-0.0.1/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpectrometryMeasurement.java |only deisotoper-0.0.1/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/R/TestFeaturesBasedDeisotoping.java |only deisotoper-0.0.1/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/R/TestUtilities.java |only deisotoper-0.0.1/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/dto/TestMassSpectrometryMeasurement.java |only deisotoper-0.0.1/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/TestConfiguration.java |only deisotoper-0.0.1/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/TestDeisotoper.java |only deisotoper-0.0.1/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/TestIsotopicCluster.java |only deisotoper-0.0.1/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/TestIsotopicSet.java |only deisotoper-0.0.1/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/TestScore.java |only deisotoper-0.0.2/deisotoper/DESCRIPTION | 23 deisotoper-0.0.2/deisotoper/MD5 | 92 +- deisotoper-0.0.2/deisotoper/NAMESPACE | 4 deisotoper-0.0.2/deisotoper/R/deisotoper.R | 81 + deisotoper-0.0.2/deisotoper/README.md | 4 deisotoper-0.0.2/deisotoper/build |only deisotoper-0.0.2/deisotoper/inst/doc |only deisotoper-0.0.2/deisotoper/inst/java/deisotoper-1.0-SNAPSHOT.jar |binary deisotoper-0.0.2/deisotoper/java/Makefile | 12 deisotoper-0.0.2/deisotoper/java/deisotoper/pom.xml | 10 deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/R/FeaturesBasedDeisotoping.java | 69 - deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/Version.java | 17 deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasure.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasureSerializer.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasureSummary.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpectrum.java | 112 +- deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpectrumMetaInformation.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Configuration.java | 98 -- deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Deisotoper.java | 392 +++++++-- deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/DeisotoperMassSpectrumAdapter.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicCluster.java | 171 ++-- deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicClusterGraph.java | 123 +- deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicSet.java | 225 +++-- deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Peak.java | 40 deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/PeakList.java | 179 +++- deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Score.java | 391 +++------ deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/ScoreFive.java | 17 deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/ScoringConfiguration.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/ReadMGF.java | 36 deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/ReadStdIn.java | 14 deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/WriteMGF.java | 56 - deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/WriteStdOut.java | 4 deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Convert.java | 30 deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Deisotoper.java | 14 deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Mspy.java | 12 deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Peaklist.java | 6 deisotoper-0.0.2/deisotoper/java/deisotoper/src/main/java/ch/fgcz/proteomics/utilities/MathUtils.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/R/FeaturesBasedDeisotopingTest.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/R/UtilitiesTest.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/dto/MassSpecMeasureTest.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/ConfigurationTest.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/DeisotoperTest.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/IsotopicClusterTest.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/IsotopicSetTest.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/ScoreTest.java |only deisotoper-0.0.2/deisotoper/java/deisotoper/src/test/java/ch/fgcz/proteomics/mspy/TestMspy.java | 25 deisotoper-0.0.2/deisotoper/man/deisotope.Rd | 23 deisotoper-0.0.2/deisotoper/man/deisotoper.Rd | 27 deisotoper-0.0.2/deisotoper/tests/testthat/test-deisotoper.R | 427 ---------- deisotoper-0.0.2/deisotoper/vignettes |only 59 files changed, 1411 insertions(+), 1323 deletions(-)
Title: Quality Improvement Charts
Description: Functions for making run charts, Shewhart control charts and
Pareto charts for continuous quality improvement. Included control charts are:
I, MR, Xbar, S, T, C, U, U', P, P', and G charts. Non-random variation in the
form of minor to moderate persistent shifts in data over time is identified by
the Anhoej rules for unusually long runs and unusually few crossing
[Anhoej, Olesen (2014) <doi:10.1371/journal.pone.0113825>].
Non-random variation in the form of larger, possibly transient, shifts is
identified by Shewhart's 3-sigma rule [Mohammed, Worthington, Woodall (2008)
<doi:10.1136/qshc.2004.012047>].
Author: Jacob Anhoej [aut, cre]
Maintainer: Jacob Anhoej <jacob@anhoej.net>
Diff between qicharts2 versions 0.2.0 dated 2017-11-19 and 0.2.1 dated 2017-12-08
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS | 4 ++++ R/qic.R | 2 +- build/vignette.rds |binary inst/doc/qicharts2.html | 42 +++++++++++++++++++++--------------------- 6 files changed, 34 insertions(+), 30 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: State space modelling is an efficient and flexible method for
statistical inference of a broad class of time series and other data. KFAS
includes fast functions for Kalman filtering, smoothing, forecasting, and
simulation of multivariate exponential family state space models, with
observations from Gaussian, Poisson, binomial, negative binomial, and gamma
distributions.
Author: Jouni Helske <jouni.helske@iki.fi>
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between KFAS versions 1.2.9 dated 2017-08-21 and 1.3.0 dated 2017-12-08
ChangeLog | 14 ++++- DESCRIPTION | 16 +++--- MD5 | 33 ++++++------ R/KFS.R | 27 ++++++++-- R/internalResids.R | 18 +++--- R/plot.SSModel.R | 18 +++--- R/rstandard.KFS.R | 8 +-- build/vignette.rds |binary inst/doc/KFAS.Rnw | 2 inst/doc/KFAS.pdf |binary man/KFS.Rd | 19 +++++++ man/plot.SSModel.Rd | 5 + man/rstandard.KFS.Rd | 5 + src/declarations.h | 2 src/filter1step.f95 | 133 +++++++++++++++++++++++++++++++++++++++++++++++++++ src/init.c | 1 src/kfilter2.f95 |only vignettes/KFAS.Rnw | 2 18 files changed, 249 insertions(+), 54 deletions(-)
Title: Uniform Design of Experiments
Description: Efficient procedures for constructing uniform design of experiments under various space-filling criteria. It is based on a stochastic and adaptive threshold accepting algorithm with flexible initialization, adaptive threshold, and stochastic evolution. The package may also construct the augmented uniform designs in a sequential manner.
Author: Aijun Zhang, Haoyu Li, Shijie Quan
Maintainer: Aijun Zhang <ajzhang@hku.hk>
Diff between UniDOE versions 1.0 dated 2017-11-29 and 1.0.1 dated 2017-12-08
UniDOE-1.0.1/UniDOE/DESCRIPTION | 10 - UniDOE-1.0.1/UniDOE/MD5 | 46 +++-- UniDOE-1.0.1/UniDOE/R/R_Wrapper.R | 195 ++++++++++++------------ UniDOE-1.0.1/UniDOE/R/RcppExports.R | 16 - UniDOE-1.0.1/UniDOE/data |only UniDOE-1.0.1/UniDOE/man/DesignEval.Rd |only UniDOE-1.0.1/UniDOE/man/GenAUD.Rd |only UniDOE-1.0.1/UniDOE/man/GenLP.Rd |only UniDOE-1.0.1/UniDOE/man/GenUD.Rd |only UniDOE-1.0.1/UniDOE/man/LHD_CD2.Rd |only UniDOE-1.0.1/UniDOE/man/LHD_MD2.Rd |only UniDOE-1.0.1/UniDOE/man/UD_CD2.Rd |only UniDOE-1.0.1/UniDOE/man/UD_MD2.Rd |only UniDOE-1.0.1/UniDOE/man/unidoe-internal.Rd | 36 ++-- UniDOE-1.0.1/UniDOE/src/RcppExports.cpp | 40 ++-- UniDOE-1.0.1/UniDOE/src/doe_DesignUtil.cpp | 24 -- UniDOE-1.0.1/UniDOE/src/doe_DesignUtil.h | 41 ----- UniDOE-1.0.1/UniDOE/src/doe_Eval.cpp | 59 ++++++- UniDOE-1.0.1/UniDOE/src/doe_Eval.h | 5 UniDOE-1.0.1/UniDOE/src/doe_Index.cpp | 4 UniDOE-1.0.1/UniDOE/src/doe_Matrix.cpp | 10 - UniDOE-1.0.1/UniDOE/src/doe_maximin.cpp | 14 + UniDOE-1.0.1/UniDOE/src/doe_search.cpp | 49 +----- UniDOE-1.0.1/UniDOE/src/main.cpp | 48 +---- UniDOE-1.0.1/UniDOE/src/registerDynamicSymbol.c | 2 UniDOE-1.0/UniDOE/man/AUDC.Rd |only UniDOE-1.0/UniDOE/man/Eval.Rd |only UniDOE-1.0/UniDOE/man/LP.Rd |only UniDOE-1.0/UniDOE/man/UDC.Rd |only 29 files changed, 279 insertions(+), 320 deletions(-)
More information about NetworkDistance at CRAN
Permanent link
Title: Weaning Age Reconstruction with Nitrogen Isotope Analysis
Description: This estimates precise weaning ages
for a given skeletal population
by analyzing the stable nitrogen isotope ratios of them.
Bone collagen turnover rates estimated anew and
the approximate Bayesian computation (ABC)
were adopted in this package.
Author: Takumi Tsutaya
Maintainer: Takumi Tsutaya <tsutayatakumi@gmail.com>
Diff between WARN versions 1.2-2 dated 2017-02-21 and 1.2-3 dated 2017-12-08
ChangeLog | 4 + DESCRIPTION | 8 +-- MD5 | 12 ++-- NEWS | 4 + R/warn.R | 137 +++++++++++++++++++++++++++++++------------------------ R/warn_s3.R | 6 +- man/plot.warn.Rd | 3 - 7 files changed, 102 insertions(+), 72 deletions(-)
Title: Parametric Mortality Models, Life Tables and HMD
Description: Fit the most popular human mortality 'laws', and construct
full and abridge life tables given various input indices. A mortality
law is a parametric function that describes the dying-out process of
individuals in a population during a significant portion of their
life spans. For a comprehensive review of the most important mortality
laws see Tabeau (2001) <doi:10.1007/0-306-47562-6_1>.
An elegant function for downloading data from Human Mortality
Database <http://www.mortality.org> is provided as well.
Author: Marius D. Pascariu [aut, cre],
Vladimir Canudas-Romo [ctb]
Maintainer: Marius D. Pascariu <mpascariu@outlook.com>
Diff between MortalityLaws versions 1.0.5 dated 2017-10-26 and 1.2.0 dated 2017-12-08
MortalityLaws-1.0.5/MortalityLaws/R/data.R |only MortalityLaws-1.0.5/MortalityLaws/man/choose_Spar.Rd |only MortalityLaws-1.0.5/MortalityLaws/man/read_hmd.Rd |only MortalityLaws-1.2.0/MortalityLaws/DESCRIPTION | 13 MortalityLaws-1.2.0/MortalityLaws/MD5 | 83 +-- MortalityLaws-1.2.0/MortalityLaws/NEWS |only MortalityLaws-1.2.0/MortalityLaws/R/fun_Laws.R | 123 ++-- MortalityLaws-1.2.0/MortalityLaws/R/fun_LifeTable.R | 83 +-- MortalityLaws-1.2.0/MortalityLaws/R/fun_MortalityLaw.R | 259 +++++----- MortalityLaws-1.2.0/MortalityLaws/R/fun_availableHMD.R | 2 MortalityLaws-1.2.0/MortalityLaws/R/fun_availableLF.R | 16 MortalityLaws-1.2.0/MortalityLaws/R/fun_availableLaws.R | 8 MortalityLaws-1.2.0/MortalityLaws/R/fun_data_and_imports.R |only MortalityLaws-1.2.0/MortalityLaws/R/fun_graphics.R |only MortalityLaws-1.2.0/MortalityLaws/R/fun_readHMD.R | 110 ++-- MortalityLaws-1.2.0/MortalityLaws/R/fun_utils.R | 71 -- MortalityLaws-1.2.0/MortalityLaws/THANKS |only MortalityLaws-1.2.0/MortalityLaws/build |only MortalityLaws-1.2.0/MortalityLaws/inst |only MortalityLaws-1.2.0/MortalityLaws/man/LifeTable.Rd | 37 - MortalityLaws-1.2.0/MortalityLaws/man/LifeTable.core.Rd | 27 - MortalityLaws-1.2.0/MortalityLaws/man/MortalityLaw.Rd | 89 +-- MortalityLaws-1.2.0/MortalityLaws/man/ReadHMD.Rd | 42 - MortalityLaws-1.2.0/MortalityLaws/man/ReadHMD.core.Rd |only MortalityLaws-1.2.0/MortalityLaws/man/ahmd.Rd | 2 MortalityLaws-1.2.0/MortalityLaws/man/availableHMD.Rd | 6 MortalityLaws-1.2.0/MortalityLaws/man/availableLF.Rd | 4 MortalityLaws-1.2.0/MortalityLaws/man/availableLaws.Rd | 4 MortalityLaws-1.2.0/MortalityLaws/man/bring_parameters.Rd | 6 MortalityLaws-1.2.0/MortalityLaws/man/coale.demeny.ax.Rd | 11 MortalityLaws-1.2.0/MortalityLaws/man/compute.ax.Rd | 6 MortalityLaws-1.2.0/MortalityLaws/man/find.my.case.Rd | 14 MortalityLaws-1.2.0/MortalityLaws/man/mx_qx.Rd | 2 MortalityLaws-1.2.0/MortalityLaws/man/objective_fun.Rd | 28 - MortalityLaws-1.2.0/MortalityLaws/man/onAttach.Rd |only MortalityLaws-1.2.0/MortalityLaws/man/plot.MortalityLaw.Rd | 11 MortalityLaws-1.2.0/MortalityLaws/man/predict.MortalityLaw.Rd | 13 MortalityLaws-1.2.0/MortalityLaws/man/print.availableLF.Rd | 4 MortalityLaws-1.2.0/MortalityLaws/man/print.availableLaws.Rd | 4 MortalityLaws-1.2.0/MortalityLaws/tests/testthat.R | 2 MortalityLaws-1.2.0/MortalityLaws/tests/testthat/test_LifeTable.R | 53 +- MortalityLaws-1.2.0/MortalityLaws/tests/testthat/test_MortalityLaws.R | 112 ++-- MortalityLaws-1.2.0/MortalityLaws/tests/testthat/test_ReadHMD.R | 1 MortalityLaws-1.2.0/MortalityLaws/tests/testthat/test_availableX.R | 1 MortalityLaws-1.2.0/MortalityLaws/vignettes |only 45 files changed, 666 insertions(+), 581 deletions(-)
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'Microsoft Word', 'Microsoft PowerPoint' and 'HTML' documents.
Functions are provided to let users create tables, modify and format their content.
It extends package 'officer' that does not contain any feature for customized tabular reporting
and can be used with R Markdown documents.
Author: David Gohel [aut, cre],
Maxim Nazarov [ctb] (rmarkdown for docx output)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.3.0 dated 2017-09-05 and 0.4.0 dated 2017-12-08
flextable-0.3.0/flextable/R/lazy_display.R |only flextable-0.3.0/flextable/R/tabwid.R |only flextable-0.3.0/flextable/inst/htmlwidgets |only flextable-0.3.0/flextable/man/tabwid-shiny.Rd |only flextable-0.4.0/flextable/DESCRIPTION | 25 - flextable-0.4.0/flextable/MD5 | 115 ++--- flextable-0.4.0/flextable/NAMESPACE | 32 - flextable-0.4.0/flextable/NEWS | 11 flextable-0.4.0/flextable/R/body_add_flextable.R | 74 --- flextable-0.4.0/flextable/R/complex_tabpart.R | 31 + flextable-0.4.0/flextable/R/display.R | 29 - flextable-0.4.0/flextable/R/docx_str.R |only flextable-0.4.0/flextable/R/empty.R | 5 flextable-0.4.0/flextable/R/flextable.R | 85 +++- flextable-0.4.0/flextable/R/flextable_sizes.R | 24 - flextable-0.4.0/flextable/R/format.complex_tabpart.R | 11 flextable-0.4.0/flextable/R/html_str.R |only flextable-0.4.0/flextable/R/merge_flextable.R | 10 flextable-0.4.0/flextable/R/ph_with_flextable.R | 10 flextable-0.4.0/flextable/R/r6_class.R | 177 +++++--- flextable-0.4.0/flextable/R/regulartable.R | 44 +- flextable-0.4.0/flextable/R/set_headers.R | 9 flextable-0.4.0/flextable/R/simple_tabpart.R | 13 flextable-0.4.0/flextable/R/styles.R | 125 ++---- flextable-0.4.0/flextable/R/utils.R | 60 ++ flextable-0.4.0/flextable/README.md | 37 + flextable-0.4.0/flextable/build/vignette.rds |binary flextable-0.4.0/flextable/inst/doc/examples.R | 18 flextable-0.4.0/flextable/inst/doc/examples.Rmd | 28 + flextable-0.4.0/flextable/inst/doc/examples.html | 47 +- flextable-0.4.0/flextable/inst/doc/format.R | 199 ++++----- flextable-0.4.0/flextable/inst/doc/format.Rmd | 195 ++++----- flextable-0.4.0/flextable/inst/doc/format.html | 249 +++++------- flextable-0.4.0/flextable/inst/doc/layout.R | 107 ++--- flextable-0.4.0/flextable/inst/doc/layout.Rmd | 116 ++--- flextable-0.4.0/flextable/inst/doc/layout.html | 160 +++---- flextable-0.4.0/flextable/inst/doc/overview.R | 95 ++-- flextable-0.4.0/flextable/inst/doc/overview.Rmd | 168 ++++---- flextable-0.4.0/flextable/inst/doc/overview.html | 162 +++---- flextable-0.4.0/flextable/inst/web_1.0.0 |only flextable-0.4.0/flextable/man/as_image.Rd | 7 flextable-0.4.0/flextable/man/border.Rd | 1 flextable-0.4.0/flextable/man/dim.flextable.Rd | 1 flextable-0.4.0/flextable/man/dim_pretty.Rd | 2 flextable-0.4.0/flextable/man/display.Rd | 30 + flextable-0.4.0/flextable/man/empty_blanks.Rd | 21 - flextable-0.4.0/flextable/man/flextable.Rd | 5 flextable-0.4.0/flextable/man/knit_print.flextable.Rd |only flextable-0.4.0/flextable/man/merge_at.Rd | 8 flextable-0.4.0/flextable/man/ph_with_flextable.Rd | 8 flextable-0.4.0/flextable/man/set_formatter.Rd | 23 + flextable-0.4.0/flextable/man/style.Rd | 1 flextable-0.4.0/flextable/man/tabwid.Rd | 10 flextable-0.4.0/flextable/tests/testthat/test-errors.R | 28 + flextable-0.4.0/flextable/tests/testthat/test-images.R | 2 flextable-0.4.0/flextable/tests/testthat/test-misc.R |only flextable-0.4.0/flextable/tests/testthat/test-pptx-tables.R | 2 flextable-0.4.0/flextable/tests/testthat/test-rmarkdown.R |only flextable-0.4.0/flextable/vignettes/examples.Rmd | 28 + flextable-0.4.0/flextable/vignettes/format.Rmd | 195 ++++----- flextable-0.4.0/flextable/vignettes/layout.Rmd | 116 ++--- flextable-0.4.0/flextable/vignettes/overview.Rmd | 168 ++++---- 62 files changed, 1697 insertions(+), 1430 deletions(-)
Title: X Ray Vision on your Datasets
Description: Tools to analyze datasets previous to any statistical modeling.
Has various functions designed to find inconsistencies and understanding the distribution of the data.
Author: Pablo Seibelt [aut, cre]
Maintainer: Pablo Seibelt <pabloseibelt@sicarul.com>
Diff between xray versions 0.1 dated 2017-11-22 and 0.2 dated 2017-12-08
DESCRIPTION | 8 - MD5 | 22 ++-- NAMESPACE | 2 R/anomalies.R | 155 ++++++++++++---------------- R/distributions.R | 190 ++++++++++++++++++++--------------- R/timebased.R | 92 ++++++++++------ README.md | 56 ++++++---- man/anomalies.Rd | 16 +- man/distributions.Rd | 4 man/timebased.Rd | 7 - tools/README-example-timebased-1.png |binary tools/README-example-timebased-2.png |binary 12 files changed, 305 insertions(+), 247 deletions(-)