Title: Control Number of OpenMP Threads Dynamically
Description: The OpenMPController package provides a function omp_set_num_threads()
to set the number of OpenMP threads to be used.
This may be useful, for example, when linking against a vendor
optimised BLAS/LAPACK library (e.g. the AMD Core Math
Library), since the defaults used by those libraries may not
be highly performant.
Author: Simon Guest <simon.guest@tesujimath.org>
Maintainer: Simon Guest <simon.guest@tesujimath.org>
Diff between OpenMPController versions 0.2-4 dated 2017-10-25 and 0.2-5 dated 2017-12-10
DESCRIPTION | 11 ++++++----- MD5 | 2 +- 2 files changed, 7 insertions(+), 6 deletions(-)
More information about OpenMPController at CRAN
Permanent link
Title: Tidy Tools for 'Raster' Data
Description: Facilities to work with vector and raster data in efficient
repeatable and systematic work flow. Missing functionality in existing packages
is included here to allow extraction from raster data with 'simple features' and
'Spatial' types and to make extraction consistent and straightforward. Extract cell
numbers from raster data and return the cells, values and weights as a data frame
rather than as lists of matrices or vectors. The functions here allow spatial data
to be used without special handling for the format currently in use.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between tabularaster versions 0.3.0 dated 2017-08-05 and 0.4.0 dated 2017-12-10
tabularaster-0.3.0/tabularaster/vignettes/raster-abstraction.Rmd |only tabularaster-0.4.0/tabularaster/DESCRIPTION | 8 tabularaster-0.4.0/tabularaster/MD5 | 30 +- tabularaster-0.4.0/tabularaster/NEWS.md | 8 tabularaster-0.4.0/tabularaster/R/tabularaster-package.r | 10 tabularaster-0.4.0/tabularaster/R/tibble.R | 15 + tabularaster-0.4.0/tabularaster/README.md | 2 tabularaster-0.4.0/tabularaster/build/vignette.rds |binary tabularaster-0.4.0/tabularaster/data/oisst.rda |only tabularaster-0.4.0/tabularaster/inst/doc/cell-index-raster-abstraction.html | 4 tabularaster-0.4.0/tabularaster/inst/doc/tabularaster-usage.R | 35 +++ tabularaster-0.4.0/tabularaster/inst/doc/tabularaster-usage.Rmd | 40 +++ tabularaster-0.4.0/tabularaster/inst/doc/tabularaster-usage.html | 106 ++++++---- tabularaster-0.4.0/tabularaster/inst/examples/meshplot.R |only tabularaster-0.4.0/tabularaster/inst/examples/pip_cell.R |only tabularaster-0.4.0/tabularaster/inst/examples/reproject-raster-by-polygon.R |only tabularaster-0.4.0/tabularaster/man/as_tibble.Rd | 4 tabularaster-0.4.0/tabularaster/man/oisst.Rd |only tabularaster-0.4.0/tabularaster/vignettes/tabularaster-usage.Rmd | 40 +++ 19 files changed, 244 insertions(+), 58 deletions(-)
Title: Tables with Labels and Some Useful Functions from Spreadsheets
and 'SPSS' Statistics
Description: Package provides tabulation functions with support for 'SPSS'-style
labels, multiple / nested banners, weights, multiple-response variables
and significance testing. There are facilities for nice output of tables
in 'knitr', R notebooks, 'Shiny' and 'Jupyter' notebooks. Proper methods
for labelled variables add value labels support to base R functions and to
some functions from other packages. Additionally, the package offers
useful functions for data processing in marketing research / social
surveys - popular data transformation functions from 'SPSS' Statistics
('RECODE', 'COUNT', 'COMPUTE', 'DO IF', etc.) and 'Excel' ('COUNTIF',
'VLOOKUP', etc.). Package is intended to help people to move data
processing from 'Excel'/'SPSS' to R.
Author: Gregory Demin [aut, cre]
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between expss versions 0.8.3 dated 2017-11-06 and 0.8.4 dated 2017-12-10
DESCRIPTION | 18 MD5 | 80 NAMESPACE | 4 NEWS | 5 R/aaa_utils.R | 15 R/add_rows.R | 4 R/expss.R | 9 R/html_table.R | 27 R/modify.R | 65 build/vignette.rds |binary inst/doc/TablesWithLabelsInR.R | 1 inst/doc/TablesWithLabelsInR.Rmd | 1 inst/doc/TablesWithLabelsInR.html | 6725 +++++++++++++++++------- man/add_rows.Rd | 2 man/htmlTable.etable.Rd | 10 man/reexports.Rd | 8 tests/testthat/rds/htmlTable1.rds |binary tests/testthat/rds/htmlTable10.rds |binary tests/testthat/rds/htmlTable11.rds |binary tests/testthat/rds/htmlTable12.rds |binary tests/testthat/rds/htmlTable12_no_rowgroups.rds |binary tests/testthat/rds/htmlTable12single.rds |binary tests/testthat/rds/htmlTable12single2.rds |binary tests/testthat/rds/htmlTable13.rds |binary tests/testthat/rds/htmlTable13_1.rds |binary tests/testthat/rds/htmlTable14.rds |binary tests/testthat/rds/htmlTable14_1.rds |binary tests/testthat/rds/htmlTable15.rds |binary tests/testthat/rds/htmlTable16.rds |binary tests/testthat/rds/htmlTable17.rds |binary tests/testthat/rds/htmlTable18.rds |binary tests/testthat/rds/htmlTable19.rds |binary tests/testthat/rds/htmlTable2.rds |binary tests/testthat/rds/htmlTable2empty1.rds |binary tests/testthat/rds/htmlTable2single1.rds |binary tests/testthat/rds/htmlTable3.rds |binary tests/testthat/rds/htmlTable3_no_rowgroups.rds |binary tests/testthat/rds/knit_print.rds |binary tests/testthat/test_add_rows.R | 4 tests/testthat/test_html_datatable.R | 51 vignettes/TablesWithLabelsInR.Rmd | 1 41 files changed, 5053 insertions(+), 1977 deletions(-)
Title: Dynamic Correlation Package
Description: Computes dynamical correlation estimates and percentile
bootstrap confidence intervals for pairs of longitudinal
responses, including consideration of lags and derivatives.
Author: Joel Dubin [aut, cre],
Mike Li [aut],
Dandi Qiao [aut],
Hans-Georg Müller [aut]
Maintainer: Joel Dubin <jdubin@uwaterloo.ca>
Diff between dynCorr versions 1.0.0 dated 2017-06-10 and 1.1.0 dated 2017-12-10
DESCRIPTION | 8 - MD5 | 12 +- NEWS.md | 7 + R/bootstrapCI.R | 262 +++++++++++++++++++++++++++++++--------------- R/dynamicCorrelation.R | 197 +++++++++++++++++++++++++++------- man/bootstrapCI.Rd | 43 +++++-- man/dynamicCorrelation.Rd | 103 +++++++++++++----- 7 files changed, 463 insertions(+), 169 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting including the introduced here Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics and a built-in help system. A confirmatory factor analysis of multiple indicator measurement models is available, as are pedagogical routines for data simulation such as for the Central Limit Theorem. Compatible with 'RStudio' and 'knitr' including generation of R markdown instructions for interpretative output.
Author: David W. Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 3.6.6 dated 2017-09-09 and 3.6.7 dated 2017-12-10
DESCRIPTION | 10 +-- MD5 | 56 ++++++++--------- NAMESPACE | 5 + NEWS | 38 ++++++++++- R/BoxPlot.R | 20 +++++- R/Histogram.R | 4 - R/PieChart.R | 102 ++++++++++++++++++++++++------- R/Plot.R | 9 +- R/SummaryStats.R | 3 R/bc.zmain.R | 27 ++++---- R/bx.R | 2 R/dpmat.zmain.R | 3 R/pc.zmain.R | 164 ++++++++++++++++++++++++++++++++++++++------------ R/plt.zVBS.R | 10 ++- R/plt.zadd.R | 1 R/plt.zmain.R | 14 ++-- R/reg.zRmd.R | 8 +- R/showWheel.R | 29 ++++---- R/ss.zfactor.R | 7 +- R/ss.znumeric.R | 12 +++ R/style.R | 9 +- R/zzz.R | 83 +++++++++++++------------ man/BarChart.Rd | 16 ++-- man/Histogram.Rd | 2 man/PieChart.Rd | 86 +++++++++++++++++++------- man/Plot.Rd | 34 +++++----- man/SummaryStats.Rd | 2 man/VariableLabels.Rd | 2 man/showWheel.Rd | 23 ++++--- 29 files changed, 527 insertions(+), 254 deletions(-)
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and
regression models.
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer,
Brenton Kenkel, the R Core Team, Michael Benesty, Reynald Lescarbeau,
Andrew Ziem, Luca Scrucca, Yuan Tang, Can Candan, and Tyler Hunt.
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between caret versions 6.0-77 dated 2017-09-07 and 6.0-78 dated 2017-12-10
caret-6.0-77/caret/tests/testthat/preProcess.R |only caret-6.0-77/caret/tests/testthat/preProcess_methods.R |only caret-6.0-78/caret/DESCRIPTION | 6 caret-6.0-78/caret/MD5 | 76 +-- caret-6.0-78/caret/R/bagEarth.R | 281 +++++++----- caret-6.0-78/caret/R/bagFDA.R | 5 caret-6.0-78/caret/R/createDataPartition.R | 2 caret-6.0-78/caret/R/createResample.R | 37 - caret-6.0-78/caret/R/dummyVar.R | 2 caret-6.0-78/caret/R/knn3.R | 70 +- caret-6.0-78/caret/R/knnreg.R | 68 +- caret-6.0-78/caret/R/postResample.R | 7 caret-6.0-78/caret/R/preProcess.R | 41 + caret-6.0-78/caret/R/print.train.R | 2 caret-6.0-78/caret/R/resamples.R | 6 caret-6.0-78/caret/R/spatialSign.R | 92 ++- caret-6.0-78/caret/R/train.default.R | 20 caret-6.0-78/caret/R/twoClassSim.R | 2 caret-6.0-78/caret/R/workflows.R | 90 +-- caret-6.0-78/caret/build/vignette.rds |binary caret-6.0-78/caret/inst/NEWS.Rd | 43 + caret-6.0-78/caret/inst/doc/caret.R | 1 caret-6.0-78/caret/inst/doc/caret.Rnw | 1 caret-6.0-78/caret/inst/doc/caret.pdf |binary caret-6.0-78/caret/inst/models/models.RData |binary caret-6.0-78/caret/man/bagEarth.Rd | 5 caret-6.0-78/caret/man/bagFDA.Rd | 5 caret-6.0-78/caret/man/createDataPartition.Rd | 5 caret-6.0-78/caret/man/knn3.Rd | 2 caret-6.0-78/caret/man/knnreg.Rd | 2 caret-6.0-78/caret/man/models.Rd | 83 ++- caret-6.0-78/caret/man/postResample.Rd | 3 caret-6.0-78/caret/man/preProcess.Rd | 8 caret-6.0-78/caret/man/predict.bagEarth.Rd | 10 caret-6.0-78/caret/man/spatialSign.Rd | 36 + caret-6.0-78/caret/man/summary.bagEarth.Rd | 1 caret-6.0-78/caret/man/train.Rd | 16 caret-6.0-78/caret/tests/testthat/test_models_bagEarth.R | 10 caret-6.0-78/caret/tests/testthat/test_preProcess.R |only caret-6.0-78/caret/tests/testthat/test_preProcess_methods.R |only caret-6.0-78/caret/tests/testthat/test_spatialSign.R | 15 41 files changed, 626 insertions(+), 427 deletions(-)
Title: Normalisation Tools for Inter-Condition Variability of ChIP-Seq
Data
Description: Inter-sample condition variability is a key challenge of normalising ChIP-seq data. This implementation uses either spike-in or a second factor as a control for normalisation. Input can either be from 'DiffBind' or a matrix formatted for 'DESeq2'. The output is either a 'DiffBind' object or the default 'DESeq2' output. Either can then be processed as normal. Supporting manuscript Guertin, Markowetz and Holding (2017) <doi:10.1101/182261>.
Author: Andrew N Holding
Maintainer: Andrew N Holding <andrew.holding@cruk.cam.ac.uk>
Diff between Brundle versions 1.0.5 dated 2017-09-19 and 1.0.7 dated 2017-12-10
DESCRIPTION | 9 +-- MD5 | 33 ++++++----- NAMESPACE | 3 + R/brundle-data.R | 11 +++ R/brundle.R | 105 +++++++++++++++++++++++++++++++++++++ README.md | 48 +++++++++++++++- data/dbaControl.rda |only data/dbaExperiment.rda |binary data/jg.conditions.rda |binary data/jg.controlCountsTreated.rda |binary data/jg.controlCountsUntreated.rda |binary data/jg.controlPeakset.rda |binary data/jg.controlPeaksetDeSeq.rda |binary data/jg.controlResultsDeseq.rda |binary data/jg.experimentPeakset.rda |binary data/jg.experimentResultsDeseq.rda |binary man/Brundle.Rd |only man/dbaControl.Rd |only man/dbaExperiment.Rd | 2 19 files changed, 185 insertions(+), 26 deletions(-)
Title: R Interface to a 'PostGIS' Database
Description: Provides an interface between R and
'PostGIS'-enabled 'PostgreSQL' databases to transparently transfer
spatial data. Both vector (points, lines, polygons) and raster
data are supported in read and write modes. Also provides
convenience functions to execute common procedures in
'PostgreSQL/PostGIS'.
Author: Mathieu Basille [aut],
David Bucklin [aut, cre]
Maintainer: David Bucklin <david.bucklin@gmail.com>
Diff between rpostgis versions 1.3.0 dated 2017-06-30 and 1.4.0 dated 2017-12-10
DESCRIPTION | 8 MD5 | 106 ++-- NAMESPACE | 120 ++-- NEWS | 831 ++++++++++++++++----------------- R/all_db_wrapper_fns.R | 1144 +++++++++++++++++++++++---------------------- R/dbUtils_notExported.R | 585 ++++++++++++----------- R/dbWriteDataFrame.R | 584 +++++++++++------------ R/pgGetBoundary.R | 200 +++---- R/pgGetGeom.R | 1176 +++++++++++++++++++++++------------------------ R/pgGetRast.R | 484 +++++++++---------- R/pgInsert.R | 728 ++++++++++++++--------------- R/pgInsertize.R | 1030 ++++++++++++++++++++--------------------- R/pgListGeom.R | 158 +++--- R/pgMakePts.R | 396 +++++++-------- R/pgPostGIS.R | 406 ++++++++-------- R/pgSRID.R | 270 +++++----- R/pgWriteRast.R | 405 ++++++++-------- R/rpostgis-package.R | 88 +-- README.md | 114 ++-- TODO |only inst/CITATION | 22 man/bs.Rd |only man/dbAddKey.Rd | 124 ++-- man/dbAsDate.Rd | 92 +-- man/dbBuildTableQuery.Rd | 54 +- man/dbColumn.Rd | 110 ++-- man/dbComment.Rd | 94 +-- man/dbConnCheck.Rd | 30 - man/dbDrop.Rd | 102 ++-- man/dbExistsTable.Rd | 34 - man/dbGetDefs.Rd | 34 - man/dbIndex.Rd | 131 ++--- man/dbSchema.Rd | 84 +-- man/dbTableInfo.Rd | 66 +- man/dbTableNameFix.Rd | 84 +-- man/dbVacuum.Rd | 100 +-- man/dbVersion.Rd | 36 - man/dbWriteDataFrame.Rd | 160 +++--- man/pgCheckGeom.Rd | 42 - man/pgGetBoundary.Rd | 76 +-- man/pgGetGeom.Rd | 190 +++---- man/pgGetGeomQ.Rd | 44 - man/pgGetLines.Rd | 56 +- man/pgGetPolys.Rd | 58 +- man/pgGetPts.Rd | 64 +- man/pgGetRast.Rd | 100 +-- man/pgGetSRID.Rd | 38 - man/pgInsert.Rd | 348 ++++++------- man/pgInsertizeGeom.Rd | 320 ++++++------ man/pgListGeom.Rd | 68 +- man/pgMakePts.Rd | 146 ++--- man/pgPostGIS.Rd | 100 +-- man/pgSRID.Rd | 106 ++-- man/pgWriteRast.Rd | 138 ++--- man/rpostgis.Rd | 92 +-- 55 files changed, 6173 insertions(+), 6003 deletions(-)
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Wouter Thielen [ctb],
Paul Teetor [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between quantmod versions 0.4-11 dated 2017-10-06 and 0.4-12 dated 2017-12-10
quantmod-0.4-11/quantmod/CHANGES |only quantmod-0.4-12/quantmod/DESCRIPTION | 10 quantmod-0.4-12/quantmod/MD5 | 15 - quantmod-0.4-12/quantmod/R/chartSeries.R | 2 quantmod-0.4-12/quantmod/R/chartSeries.chob.R | 2 quantmod-0.4-12/quantmod/R/getQuote.R | 250 +++++++++++++++-------- quantmod-0.4-12/quantmod/R/getSymbols.R | 6 quantmod-0.4-12/quantmod/man/getQuote.Rd | 1 quantmod-0.4-12/quantmod/man/quantmod-package.Rd | 7 9 files changed, 194 insertions(+), 99 deletions(-)
Title: Subsets with Reference Semantics
Description: Provides subsets with reference semantics, i.e. subsets
which automatically reflect changes in the original object, and which
optionally update the original object when they are changed.
Author: "David Hugh-Jones" <davidhughjones@gmail.com>
Maintainer: "David Hugh-Jones" <davidhughjones@gmail.com>
Diff between refset versions 0.1.0 dated 2014-12-16 and 0.1.1 dated 2017-12-10
refset-0.1.0/refset/inst/doc/refset.R |only refset-0.1.0/refset/vignettes/README-child.rmd |only refset-0.1.1/refset/DESCRIPTION | 12 - refset-0.1.1/refset/MD5 | 35 +- refset-0.1.1/refset/NAMESPACE | 2 refset-0.1.1/refset/NEWS.md |only refset-0.1.1/refset/R/refset.R | 18 + refset-0.1.1/refset/README.md | 43 +-- refset-0.1.1/refset/build/vignette.rds |binary refset-0.1.1/refset/inst/doc/refset.html | 293 ++++++++++++------------- refset-0.1.1/refset/inst/doc/refset.rmd | 4 refset-0.1.1/refset/man/contents.Rd | 10 refset-0.1.1/refset/man/is.parcel.Rd | 7 refset-0.1.1/refset/man/refset-package.Rd |only refset-0.1.1/refset/man/refset.Rd | 26 +- refset-0.1.1/refset/man/unwrap_as.Rd | 9 refset-0.1.1/refset/man/wrap.Rd | 10 refset-0.1.1/refset/man/wrapset.Rd | 10 refset-0.1.1/refset/tests/testthat/tests.R | 30 ++ refset-0.1.1/refset/vignettes/README-child |only refset-0.1.1/refset/vignettes/refset.rmd | 4 21 files changed, 285 insertions(+), 228 deletions(-)
Title: An Analysis Toolbox for Hermitian Positive Definite Matrices
Description: An implementation of data analysis tools for samples of symmetric or
Hermitian positive definite matrices, such as collections of covariance matrices
or spectral density matrices. The tools in this package can be used to perform (i)
intrinsic manifold wavelet regression and clustering for curves (1D) or surfaces (2D)
of Hermitian positive definite matrices, and (ii) exploratory data analysis and inference
for samples of (curves of) Hermitian positive definite matrices by means of intrinsic manifold
data depth and manifold rank-based hypothesis tests.
Author: Joris Chau [aut, cre]
Maintainer: Joris Chau <j.chau@uclouvain.be>
Diff between pdSpecEst versions 1.2.0 dated 2017-12-09 and 1.2.1 dated 2017-12-10
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 4 ++++ inst/doc/depth_ranktests.html | 4 ++-- inst/doc/wavelet_est_clust.R | 10 ++++++---- inst/doc/wavelet_est_clust.Rmd | 10 ++++++---- inst/doc/wavelet_est_clust.html | 4 ++-- vignettes/wavelet_est_clust.Rmd | 10 ++++++---- 8 files changed, 38 insertions(+), 28 deletions(-)
Title: Knowledge Synthesis in Agriculture - From Experimental Network
to Meta-Analysis
Description: Demo and datasets accompanying the book "Knowledge Synthesis: From Experimental Network to Meta-Analysis" (Makowski, Piraux and Brun, in preparation for December 2017).
Author: David Makowski (INRA) [aut],
Francois Piraux (Arvalis) [aut],
Francois Brun (ACTA) [aut, cre]
Maintainer: Francois Brun (ACTA) <francois.brun@acta.asso.fr>
Diff between KenSyn versions 0.1 dated 2017-11-21 and 0.2 dated 2017-12-10
KenSyn-0.1/KenSyn/R/kensyn.r |only KenSyn-0.1/KenSyn/demo/ch06_metaanalysis_metareg.r |only KenSyn-0.1/KenSyn/demo/ch06_metaanalysis_organic.r |only KenSyn-0.2/KenSyn/DESCRIPTION | 10 - KenSyn-0.2/KenSyn/MD5 | 50 ++++-- KenSyn-0.2/KenSyn/R/KenSyn.r |only KenSyn-0.2/KenSyn/R/N2O_data.r |only KenSyn-0.2/KenSyn/R/citrus_data.r |only KenSyn-0.2/KenSyn/R/organic_data.r | 2 KenSyn-0.2/KenSyn/R/wheat_var_data.r | 8 - KenSyn-0.2/KenSyn/R/wheat_var_itk_data.r | 3 KenSyn-0.2/KenSyn/R/wheat_var_soil_data.r |only KenSyn-0.2/KenSyn/R/wheat_var_years_data.r |only KenSyn-0.2/KenSyn/data/N2O.rda |only KenSyn-0.2/KenSyn/data/citrus.rda |only KenSyn-0.2/KenSyn/data/wheat_var.rda |binary KenSyn-0.2/KenSyn/data/wheat_var_soil.rda |only KenSyn-0.2/KenSyn/data/wheat_var_years.rda |only KenSyn-0.2/KenSyn/demo/00Index | 16 +- KenSyn-0.2/KenSyn/demo/ch01_mixedmodel_nlme.r | 4 KenSyn-0.2/KenSyn/demo/ch03_network_compblock.r | 138 ++++--------------- KenSyn-0.2/KenSyn/demo/ch04a_network_mean_data.r |only KenSyn-0.2/KenSyn/demo/ch04b_network_hetero_var.r |only KenSyn-0.2/KenSyn/demo/ch04c_network_pluriannual.r |only KenSyn-0.2/KenSyn/demo/ch06a_metaanalysis_organic.r |only KenSyn-0.2/KenSyn/demo/ch06b_metaanalysis_metareg.r |only KenSyn-0.2/KenSyn/demo/ch07a_metaanalysis_citrus.r |only KenSyn-0.2/KenSyn/demo/ch07b_metaanalysis_N2O.r |only KenSyn-0.2/KenSyn/demo/ch07c_metaanalysis_bayesian.r |only KenSyn-0.2/KenSyn/demo/others_network_var_itk.r |only KenSyn-0.2/KenSyn/demo/others_network_var_soil.r |only KenSyn-0.2/KenSyn/man/KenSyn-package.Rd | 8 - KenSyn-0.2/KenSyn/man/N2O.Rd |only KenSyn-0.2/KenSyn/man/citrus.Rd |only KenSyn-0.2/KenSyn/man/organic.Rd | 2 KenSyn-0.2/KenSyn/man/wheat_var.Rd | 8 - KenSyn-0.2/KenSyn/man/wheat_var_itk.Rd | 3 KenSyn-0.2/KenSyn/man/wheat_var_soil.Rd |only KenSyn-0.2/KenSyn/man/wheat_var_years.Rd |only 39 files changed, 105 insertions(+), 147 deletions(-)
Title: Google's S2 Library for Geometry on the Sphere
Description: R bindings for Google's s2 library for geometric calculations on
the sphere.
Author: Ege Rubak [aut, cre],
Jeroen Ooms [aut] (configure and cleanup script),
Edzer Pebesma [aut] (Interface to sf),
Google, Inc. [cph] (Original s2 source code)
Maintainer: Ege Rubak <rubak@math.aau.dk>
Diff between s2 versions 0.1-1 dated 2016-11-04 and 0.3-0 dated 2017-12-10
s2-0.1-1/s2/man/cell_center.Rd |only s2-0.1-1/s2/src/cell_center.cpp |only s2-0.1-1/s2/src/geometry/base/basictypes.h |only s2-0.1-1/s2/src/geometry/base/casts.h |only s2-0.1-1/s2/src/geometry/base/commandlineflags.h |only s2-0.1-1/s2/src/geometry/base/int128.h |only s2-0.1-1/s2/src/geometry/base/integral_types.h |only s2-0.1-1/s2/src/geometry/base/logging.h |only s2-0.1-1/s2/src/geometry/base/macros.h |only s2-0.1-1/s2/src/geometry/base/port.h |only s2-0.1-1/s2/src/geometry/base/scoped_ptr.h |only s2-0.1-1/s2/src/geometry/base/stl_decl.h |only s2-0.1-1/s2/src/geometry/base/stl_decl_msvc.h |only s2-0.1-1/s2/src/geometry/base/stl_decl_osx.h |only s2-0.1-1/s2/src/geometry/base/stringprintf.h |only s2-0.1-1/s2/src/geometry/base/strtoint.h |only s2-0.1-1/s2/src/geometry/base/template_util.h |only s2-0.1-1/s2/src/geometry/base/type_traits.h |only s2-0.1-1/s2/src/geometry/s2 |only s2-0.1-1/s2/src/geometry/strings/ascii_ctype.cc |only s2-0.1-1/s2/src/geometry/strings/ascii_ctype.h |only s2-0.1-1/s2/src/geometry/strings/split.h |only s2-0.1-1/s2/src/geometry/strings/stringprintf.h |only s2-0.1-1/s2/src/geometry/strings/strutil.h |only s2-0.1-1/s2/src/geometry/util/coding/coder.h |only s2-0.1-1/s2/src/geometry/util/coding/varint.h |only s2-0.1-1/s2/src/geometry/util/endian |only s2-0.1-1/s2/src/geometry/util/hash |only s2-0.1-1/s2/src/geometry/util/math/exactfloat/exactfloat.h |only s2-0.1-1/s2/src/geometry/util/math/mathlimits.h |only s2-0.1-1/s2/src/geometry/util/math/mathutil.h |only s2-0.1-1/s2/src/geometry/util/math/matrix3x3-inl.h |only s2-0.1-1/s2/src/geometry/util/math/matrix3x3.h |only s2-0.1-1/s2/src/geometry/util/math/vector2-inl.h |only s2-0.1-1/s2/src/geometry/util/math/vector2.h |only s2-0.1-1/s2/src/geometry/util/math/vector3-inl.h |only s2-0.1-1/s2/src/geometry/util/math/vector3.h |only s2-0.1-1/s2/src/geometry/util/math/vector4-inl.h |only s2-0.1-1/s2/src/geometry/util/math/vector4.h |only s2-0.3-0/s2/DESCRIPTION | 23 s2-0.3-0/s2/MD5 | 196 ++++--- s2-0.3-0/s2/NAMESPACE | 27 - s2-0.3-0/s2/R/RcppExports.R | 228 ++++++++ s2-0.3-0/s2/R/s2.R | 4 s2-0.3-0/s2/R/s2cap.R |only s2-0.3-0/s2/R/s2polygon.R |only s2-0.3-0/s2/R/s2regioncoverer.R |only s2-0.3-0/s2/cleanup |only s2-0.3-0/s2/configure | 34 - s2-0.3-0/s2/inst |only s2-0.3-0/s2/man/S2CapFromAxisHeight.Rd |only s2-0.3-0/s2/man/S2Cap_Contains.Rd |only s2-0.3-0/s2/man/S2Cap_GetRectBound.Rd |only s2-0.3-0/s2/man/S2Cap_area.Rd |only s2-0.3-0/s2/man/S2Cell.Rd |only s2-0.3-0/s2/man/S2CellIdFromPoint.Rd |only s2-0.3-0/s2/man/S2CellId_ToPoint.Rd |only s2-0.3-0/s2/man/S2CellId_ToString.Rd |only s2-0.3-0/s2/man/S2Covering.Rd |only s2-0.3-0/s2/man/S2LatLngRect.Rd |only s2-0.3-0/s2/man/S2LatLngRect_area.Rd |only s2-0.3-0/s2/man/S2Point_interpolate.Rd |only s2-0.3-0/s2/man/S2Polygon.Rd |only s2-0.3-0/s2/man/S2Polygon_Contains.Rd |only s2-0.3-0/s2/man/S2Polygon_union.Rd |only s2-0.3-0/s2/man/S2Polygons_area.Rd |only s2-0.3-0/s2/man/S2Polygons_centroid.Rd |only s2-0.3-0/s2/man/S2Polygons_intersect.Rd |only s2-0.3-0/s2/man/S2Polygons_intersection.Rd |only s2-0.3-0/s2/man/S2Polyline_dist.Rd |only s2-0.3-0/s2/man/s2-package.Rd | 24 s2-0.3-0/s2/src/Makevars.in | 95 +-- s2-0.3-0/s2/src/Makevars.win | 97 +-- s2-0.3-0/s2/src/RcppExports.cpp | 308 +++++++++++- s2-0.3-0/s2/src/Rcpp_datatypes.cpp |only s2-0.3-0/s2/src/Rcpp_s2cap.cpp |only s2-0.3-0/s2/src/Rcpp_s2cell.cpp |only s2-0.3-0/s2/src/Rcpp_s2latlng.cpp |only s2-0.3-0/s2/src/Rcpp_s2latlngrect.cpp |only s2-0.3-0/s2/src/Rcpp_s2point.cpp |only s2-0.3-0/s2/src/Rcpp_s2polygon.cpp |only s2-0.3-0/s2/src/geometry/CMakeLists.txt | 242 +++------ s2-0.3-0/s2/src/geometry/s1angle.cc | 1 s2-0.3-0/s2/src/geometry/s2.cc | 6 s2-0.3-0/s2/src/geometry/s2cell.cc | 4 s2-0.3-0/s2/src/geometry/s2edgeindex.cc | 3 s2-0.3-0/s2/src/geometry/s2loop.cc | 3 s2-0.3-0/s2/src/geometry/s2polygon.cc | 34 - s2-0.3-0/s2/src/geometry/s2polygonbuilder.cc | 3 s2-0.3-0/s2/src/geometry/s2polyline.cc | 4 s2-0.3-0/s2/src/geometry/s2regioncoverer.cc | 6 s2-0.3-0/s2/src/geometry/strings/split.cc | 38 - s2-0.3-0/s2/src/geometry/strings/stringprintf.cc | 5 s2-0.3-0/s2/src/geometry/strings/strutil.cc | 10 s2-0.3-0/s2/src/geometry/util/math/exactfloat/exactfloat.cc | 172 +++--- s2-0.3-0/s2/src/geometry/util/math/mathutil.cc | 11 s2-0.3-0/s2/tools/src_tweaks.R | 172 ++---- 97 files changed, 1099 insertions(+), 651 deletions(-)
Title: Efficient Sequential Testing with Evidence Ratios
Description: An implementation of sequential testing that uses evidence ratios
computed from the weights of a set of models. These weights correspond either
to Akaike weights computed from the Akaike Information Criterion (AIC) or the
Bayesian Information Criterion (BIC) and following Burnham & Anderson
(2004, <doi:10.1177/0049124104268644>) recommendations, or to pseudo-BMA
weights computed from the WAIC or the LOO-IC of models fitted
with 'brms' and following Yao et al. (2017, <arXiv:1704.02030v3>).
Author: Ladislas Nalborczyk [aut, cre] (0000-0002-7419-9855)
Maintainer: Ladislas Nalborczyk <ladislas.nalborczyk@gmail.com>
Diff between ESTER versions 0.1.0 dated 2017-10-16 and 0.2.0 dated 2017-12-10
DESCRIPTION | 29 +-- MD5 | 48 +++-- NAMESPACE | 19 ++ NEWS.md |only R/ESTER.R | 3 R/analysER.R |only R/bic.R | 2 R/distER.R | 28 ++- R/ictab.R | 82 +++++++--- R/seqER.R | 192 ++++++++++++++++++++++- R/seqERboot.R | 11 - R/simER.R | 420 ++++++++++++++++++++++++++++++++++++++++++++++------ README.md | 33 +--- build/vignette.rds |binary inst/doc/ESTER.R | 23 +- inst/doc/ESTER.Rmd | 48 +++-- inst/doc/ESTER.html | 69 ++++---- man/ESTER.Rd | 3 man/analysER.Rd |only man/bic.Rd | 2 man/distER.Rd | 14 - man/ictab.Rd | 44 ++++- man/plot.simER.Rd |only man/seqER.Rd | 38 ++++ man/seqERboot.Rd | 9 - man/simER.Rd | 38 +++- vignettes/ESTER.Rmd | 48 +++-- 27 files changed, 930 insertions(+), 273 deletions(-)
Title: Tools to Quickly and Neatly Summarize Data
Description: Data frame summaries, cross-tabulations,
weight-enabled frequency tables and common univariate
statistics in concise tables available in a variety of
formats (plain ASCII, Rmarkdown and HTML). A good point-
of-entry for exploring data, both for experienced and
inexperienced R users.
Author: Dominic Comtois
Maintainer: Dominic Comtois <dominic.comtois@gmail.com>
Diff between summarytools versions 0.6.5 dated 2016-12-05 and 0.8.0 dated 2017-12-10
summarytools-0.6.5/summarytools/R/test_weights.R |only summarytools-0.6.5/summarytools/build |only summarytools-0.6.5/summarytools/data/examens.txt |only summarytools-0.6.5/summarytools/data/exams.txt |only summarytools-0.6.5/summarytools/data/tabagisme.txt |only summarytools-0.6.5/summarytools/data/tobacco.txt |only summarytools-0.6.5/summarytools/inst/doc |only summarytools-0.6.5/summarytools/man/parse_arg.Rd |only summarytools-0.6.5/summarytools/vignettes |only summarytools-0.8.0/summarytools/DESCRIPTION | 38 summarytools-0.8.0/summarytools/MD5 | 81 summarytools-0.8.0/summarytools/NAMESPACE | 36 summarytools-0.8.0/summarytools/NEWS | 18 summarytools-0.8.0/summarytools/R/cleartmp.R |only summarytools-0.8.0/summarytools/R/ctable.R |only summarytools-0.8.0/summarytools/R/descr.R | 409 summarytools-0.8.0/summarytools/R/dfSummary.R | 646 summarytools-0.8.0/summarytools/R/examens.R |only summarytools-0.8.0/summarytools/R/exams.R |only summarytools-0.8.0/summarytools/R/freq.R | 270 summarytools-0.8.0/summarytools/R/label.R |only summarytools-0.8.0/summarytools/R/misc.R | 210 summarytools-0.8.0/summarytools/R/parse_args.R |only summarytools-0.8.0/summarytools/R/print.summarytools.R | 1318 + summarytools-0.8.0/summarytools/R/summarytools.R |only summarytools-0.8.0/summarytools/R/tabagisme.R |only summarytools-0.8.0/summarytools/R/tobacco.R |only summarytools-0.8.0/summarytools/R/view.R |only summarytools-0.8.0/summarytools/R/what.is.R | 82 summarytools-0.8.0/summarytools/data/examens.RData |only summarytools-0.8.0/summarytools/data/exams.RData |only summarytools-0.8.0/summarytools/data/tabagisme.RData |only summarytools-0.8.0/summarytools/data/tobacco.RData |only summarytools-0.8.0/summarytools/inst/includes/stylesheets/bootstrap-grid.css |only summarytools-0.8.0/summarytools/inst/includes/stylesheets/bootstrap-grid.min.css |only summarytools-0.8.0/summarytools/inst/includes/stylesheets/bootstrap-reboot.css |only summarytools-0.8.0/summarytools/inst/includes/stylesheets/bootstrap-reboot.min.css |only summarytools-0.8.0/summarytools/inst/includes/stylesheets/bootstrap.css | 8631 +++++++++- summarytools-0.8.0/summarytools/inst/includes/stylesheets/bootstrap.min.css | 17 summarytools-0.8.0/summarytools/inst/includes/stylesheets/custom.css | 141 summarytools-0.8.0/summarytools/man/cleartmp.Rd | 36 summarytools-0.8.0/summarytools/man/ctable.Rd |only summarytools-0.8.0/summarytools/man/descr.Rd | 92 summarytools-0.8.0/summarytools/man/dfSummary.Rd | 154 summarytools-0.8.0/summarytools/man/examens.Rd | 40 summarytools-0.8.0/summarytools/man/exams.Rd | 41 summarytools-0.8.0/summarytools/man/freq.Rd | 89 summarytools-0.8.0/summarytools/man/label-set.Rd |only summarytools-0.8.0/summarytools/man/label.Rd |only summarytools-0.8.0/summarytools/man/parse_args.Rd |only summarytools-0.8.0/summarytools/man/print.summarytools.Rd | 152 summarytools-0.8.0/summarytools/man/summarytools-package.Rd |only summarytools-0.8.0/summarytools/man/tabagisme.Rd | 46 summarytools-0.8.0/summarytools/man/tobacco.Rd | 43 summarytools-0.8.0/summarytools/man/unlabel.Rd |only summarytools-0.8.0/summarytools/man/what.is.Rd | 72 56 files changed, 11103 insertions(+), 1559 deletions(-)
Title: Neural Networks using the Stuttgart Neural Network Simulator
(SNNS)
Description: The Stuttgart Neural Network Simulator (SNNS) is a library
containing many standard implementations of neural networks. This
package wraps the SNNS functionality to make it available from
within R. Using the 'RSNNS' low-level interface, all of the
algorithmic functionality and flexibility of SNNS can be accessed.
Furthermore, the package contains a convenient high-level
interface, so that the most common neural network topologies and
learning algorithms integrate seamlessly into R.
Author: Christoph Bergmeir [aut, cre, cph],
José M. Benítez [ths],
Andreas Zell [ctb] (Part of original SNNS development team),
Niels Mache [ctb] (Part of original SNNS development team),
Günter Mamier [ctb] (Part of original SNNS development team),
Michael Vogt [ctb] (Part of original SNNS development team),
Sven Döring [ctb] (Part of original SNNS development team),
Ralf Hübner [ctb] (Part of original SNNS development team),
Kai-Uwe Herrmann [ctb] (Part of original SNNS development team),
Tobias Soyez [ctb] (Part of original SNNS development team),
Michael Schmalzl [ctb] (Part of original SNNS development team),
Tilman Sommer [ctb] (Part of original SNNS development team),
Artemis Hatzigeorgiou [ctb] (Part of original SNNS development team),
Dietmar Posselt [ctb] (Part of original SNNS development team),
Tobias Schreiner [ctb] (Part of original SNNS development team),
Bernward Kett [ctb] (Part of original SNNS development team),
Martin Reczko [ctb] (Part of original SNNS external contributors),
Martin Riedmiller [ctb] (Part of original SNNS external contributors),
Mark Seemann [ctb] (Part of original SNNS external contributors),
Marcus Ritt [ctb] (Part of original SNNS external contributors),
Jamie DeCoster [ctb] (Part of original SNNS external contributors),
Jochen Biedermann [ctb] (Part of original SNNS external contributors),
Joachim Danz [ctb] (Part of original SNNS development team),
Christian Wehrfritz [ctb] (Part of original SNNS development team),
Patrick Kursawe [ctb] (Contributors to SNNS Version 4.3),
Andre El-Ama [ctb] (Contributors to SNNS Version 4.3)
Maintainer: Christoph Bergmeir <c.bergmeir@decsai.ugr.es>
Diff between RSNNS versions 0.4-9 dated 2016-12-16 and 0.4-10 dated 2017-12-10
ChangeLog | 13 +++++++ DESCRIPTION | 70 +++++++++++++++++++++++++++++++++++++----- MD5 | 25 +++++++-------- R/SnnsRObjectFactory.R | 16 +++++++-- R/normalizeData.R | 19 ++++++----- R/reg_class.R | 3 + R/rsnns.R | 10 ++++-- man/SnnsRObjectFactory.Rd | 5 ++- man/normTrainingAndTestSet.Rd | 1 src/RSNNS_init.c |only src/bn_JordElm.cpp | 4 +- src/bn_art1.cpp | 2 - src/bn_art2.cpp | 2 - src/bn_artmap.cpp | 2 - 14 files changed, 131 insertions(+), 41 deletions(-)
Title: Phylogenetic Tools for Eco-Phylogenetics
Description: A collection of tools for building RAxML supermatrix using
PHYLIP or aligned FASTA files. These functions will be
useful for building large phylogenies using multiple markers.
Author: Jinlong Zhang [aut, cre],
Nancai Pei [ctb],
Xiangcheng Mi [ctb]
Maintainer: Jinlong Zhang <jinlongzhang01@gmail.com>
Diff between phylotools versions 0.1.2 dated 2011-08-18 and 0.2.2 dated 2017-12-10
phylotools-0.1.2/phylotools/R/RMPD.R |only phylotools-0.1.2/phylotools/R/add.mat.R |only phylotools-0.1.2/phylotools/R/aln2dat.R |only phylotools-0.1.2/phylotools/R/appendchar.R |only phylotools-0.1.2/phylotools/R/complement.r |only phylotools-0.1.2/phylotools/R/dat2phy.R |only phylotools-0.1.2/phylotools/R/del.tree.tip.R |only phylotools-0.1.2/phylotools/R/dimension.R |only phylotools-0.1.2/phylotools/R/edgesub.R |only phylotools-0.1.2/phylotools/R/fasta.split.R |only phylotools-0.1.2/phylotools/R/fmatch.R |only phylotools-0.1.2/phylotools/R/formatXY.R |only phylotools-0.1.2/phylotools/R/framsub.R |only phylotools-0.1.2/phylotools/R/gini.R |only phylotools-0.1.2/phylotools/R/hcreorder.R |only phylotools-0.1.2/phylotools/R/imagevect.R |only phylotools-0.1.2/phylotools/R/inequality.R |only phylotools-0.1.2/phylotools/R/meangini.R |only phylotools-0.1.2/phylotools/R/phy2dat.R |only phylotools-0.1.2/phylotools/R/phylocom.comdist.R |only phylotools-0.1.2/phylotools/R/phylocom.comstruct.R |only phylotools-0.1.2/phylotools/R/phylocom.pd.R |only phylotools-0.1.2/phylotools/R/phylocom.phylosor.R |only phylotools-0.1.2/phylotools/R/phyloshuffle.R |only phylotools-0.1.2/phylotools/R/plotcut.R |only phylotools-0.1.2/phylotools/R/plotscale.R |only phylotools-0.1.2/phylotools/R/resid.tree.R |only phylotools-0.1.2/phylotools/R/reverse.R |only phylotools-0.1.2/phylotools/R/rh.R |only phylotools-0.1.2/phylotools/R/rm.col.R |only phylotools-0.1.2/phylotools/R/seq2fasta.r |only phylotools-0.1.2/phylotools/R/sub.tip.label.R |only phylotools-0.1.2/phylotools/R/uniquefasta.R |only phylotools-0.1.2/phylotools/R/write.mat.R |only phylotools-0.1.2/phylotools/inst |only phylotools-0.1.2/phylotools/man/RMPD.Rd |only phylotools-0.1.2/phylotools/man/add.mat.Rd |only phylotools-0.1.2/phylotools/man/aln2dat.Rd |only phylotools-0.1.2/phylotools/man/appendchar.Rd |only phylotools-0.1.2/phylotools/man/complement.Rd |only phylotools-0.1.2/phylotools/man/dat2phy.Rd |only phylotools-0.1.2/phylotools/man/del.tree.tip.Rd |only phylotools-0.1.2/phylotools/man/dimension.Rd |only phylotools-0.1.2/phylotools/man/edgesub.Rd |only phylotools-0.1.2/phylotools/man/fasta.split.Rd |only phylotools-0.1.2/phylotools/man/fmatch.Rd |only phylotools-0.1.2/phylotools/man/formatXY.Rd |only phylotools-0.1.2/phylotools/man/framsub.Rd |only phylotools-0.1.2/phylotools/man/gini.Rd |only phylotools-0.1.2/phylotools/man/hcreorder.Rd |only phylotools-0.1.2/phylotools/man/imagevect.Rd |only phylotools-0.1.2/phylotools/man/inequality.Rd |only phylotools-0.1.2/phylotools/man/meangini.Rd |only phylotools-0.1.2/phylotools/man/phy2dat.Rd |only phylotools-0.1.2/phylotools/man/phylocom.comdist.Rd |only phylotools-0.1.2/phylotools/man/phylocom.comstruct.Rd |only phylotools-0.1.2/phylotools/man/phylocom.pd.Rd |only phylotools-0.1.2/phylotools/man/phylocom.phylosor.Rd |only phylotools-0.1.2/phylotools/man/phyloshuffle.Rd |only phylotools-0.1.2/phylotools/man/plotcut.Rd |only phylotools-0.1.2/phylotools/man/plotscale.Rd |only phylotools-0.1.2/phylotools/man/read.phy.Rd |only phylotools-0.1.2/phylotools/man/resid.tree.Rd |only phylotools-0.1.2/phylotools/man/reverse.Rd |only phylotools-0.1.2/phylotools/man/rh.Rd |only phylotools-0.1.2/phylotools/man/rm.col.Rd |only phylotools-0.1.2/phylotools/man/seq2fasta.Rd |only phylotools-0.1.2/phylotools/man/sub.tip.label.Rd |only phylotools-0.1.2/phylotools/man/uniquefasta.Rd |only phylotools-0.1.2/phylotools/man/write.mat.Rd |only phylotools-0.2.2/phylotools/DESCRIPTION | 28 +- phylotools-0.2.2/phylotools/MD5 | 114 ++-------- phylotools-0.2.2/phylotools/NAMESPACE |only phylotools-0.2.2/phylotools/R/OnAttach.R |only phylotools-0.2.2/phylotools/R/clean.fasta.name.R |only phylotools-0.2.2/phylotools/R/dat2fasta.R |only phylotools-0.2.2/phylotools/R/dat2phylip.R |only phylotools-0.2.2/phylotools/R/get.fasta.name.R |only phylotools-0.2.2/phylotools/R/get.phylip.name.R |only phylotools-0.2.2/phylotools/R/read.fasta.R |only phylotools-0.2.2/phylotools/R/read.phylip.R | 49 ++-- phylotools-0.2.2/phylotools/R/rename.fasta.R | 71 ++---- phylotools-0.2.2/phylotools/R/rm.sequence.fasta.R |only phylotools-0.2.2/phylotools/R/split_dat.R |only phylotools-0.2.2/phylotools/R/sub.taxa.label.R |only phylotools-0.2.2/phylotools/R/supermat.R | 137 +++++++----- phylotools-0.2.2/phylotools/README.md |only phylotools-0.2.2/phylotools/man/clean.fasta.name.Rd |only phylotools-0.2.2/phylotools/man/dat2fasta.Rd |only phylotools-0.2.2/phylotools/man/dat2phylip.Rd |only phylotools-0.2.2/phylotools/man/get.fasta.name.Rd |only phylotools-0.2.2/phylotools/man/get.phylip.name.Rd |only phylotools-0.2.2/phylotools/man/phylotools-package.Rd | 178 ++------------- phylotools-0.2.2/phylotools/man/read.fasta.Rd |only phylotools-0.2.2/phylotools/man/read.phylip.Rd |only phylotools-0.2.2/phylotools/man/rename.fasta.Rd | 124 +++++------ phylotools-0.2.2/phylotools/man/rm.sequence.fasta.Rd |only phylotools-0.2.2/phylotools/man/split_dat.Rd |only phylotools-0.2.2/phylotools/man/sub.taxa.label.Rd |only phylotools-0.2.2/phylotools/man/supermat.Rd | 202 ++++++++++-------- 100 files changed, 401 insertions(+), 502 deletions(-)
Title: Micro-Electro Array (MEA) Analysis
Description: Core algorithms for MEA spike train analysis, feature extraction, statistical analysis and plotting of multiple MEA recordings with multiple genotypes and treatments, published by Gelfman et al (2017) at <https://github.com/igm-team/meaRtools/>.
Author: Quanli Wang [aut, ctb],
Sahar Gelfman [aut, ctb, cre],
Diana Hall [aut, ctb],
Ryan Dhindsa [aut, ctb],
Matt Halvorsen [aut, ctb],
Ellese Cotterill [aut, ctb],
Tom Edinburgh [aut, ctb],
Stephen J. Eglen [aut, ctb, ths]
Maintainer: Sahar Gelfman <sahar.gelfman@columbia.edu>
Diff between meaRtools versions 1.0.1 dated 2017-10-12 and 1.0.2 dated 2017-12-10
meaRtools-1.0.1/meaRtools/R/make.raster.R |only meaRtools-1.0.1/meaRtools/data/parameters.rda |only meaRtools-1.0.2/meaRtools/DESCRIPTION | 10 - meaRtools-1.0.2/meaRtools/MD5 | 32 ++-- meaRtools-1.0.2/meaRtools/NAMESPACE | 2 meaRtools-1.0.2/meaRtools/R/MEA_functions.R | 4 meaRtools-1.0.2/meaRtools/R/NetworkBurst_functions.R | 39 +++-- meaRtools-1.0.2/meaRtools/R/axion.R | 13 + meaRtools-1.0.2/meaRtools/R/burstDistributions_functions.R | 4 meaRtools-1.0.2/meaRtools/R/bursts.R | 2 meaRtools-1.0.2/meaRtools/R/entropy_util.R | 73 +++++----- meaRtools-1.0.2/meaRtools/R/make_raster.R |only meaRtools-1.0.2/meaRtools/R/networkspikes.R | 6 meaRtools-1.0.2/meaRtools/R/networkspikes_functions.R | 26 +-- meaRtools-1.0.2/meaRtools/R/spikes.R | 24 ++- meaRtools-1.0.2/meaRtools/data/S.RData |binary meaRtools-1.0.2/meaRtools/data/parameters.r |only meaRtools-1.0.2/meaRtools/inst/doc/meaRtoolsGeneralUsage.html | 11 - meaRtools-1.0.2/meaRtools/inst/doc/sttc.html | 10 - 19 files changed, 143 insertions(+), 113 deletions(-)
Title: Joint Models for Longitudinal Measurements and Competing Risks
Failure Time Data
Description: Fit joint models of continuous or ordinal longitudinal data and time-to-event data with competing risks. For a detailed information, see Robert Elashoff, Gang li and Ning Li (2016, ISBN:9781439807828) ; Robert M. Elashoff,Gang Li and Ning Li (2008) <doi:10.1111/j.1541-0420.2007.00952.x> ; Ning Li, Robert Elashoff, Gang Li and Jeffrey Saver (2010) <doi:10.1002/sim.3798> .
Author: Hong Wang<wh@csu.edu.cn>, Ning Li<nli@biomath.ucla.edu> and Gang Li<vli@ucla.edu>
Maintainer: Hong Wang <wh@csu.edu.cn>
Diff between JMcmprsk versions 0.9.2 dated 2017-12-06 and 0.9.3 dated 2017-12-10
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/JMcmprsk.html | 4 ++-- src/jmc.cpp | 10 +++++----- src/jmo.cpp | 10 +++++----- 5 files changed, 20 insertions(+), 20 deletions(-)
Title: Nearest Neighbor Observation Imputation and Evaluation Tools
Description: Performs nearest neighbor-based imputation using one or more alternative
approaches to processing multivariate data. These include methods based on canonical
correlation analysis, canonical correspondence analysis, and a multivariate adaptation
of the random forest classification and regression techniques of Leo Breiman and Adele
Cutler. Additional methods are also offered. The package includes functions for
comparing the results from running alternative techniques, detecting imputation targets
that are notably distant from reference observations, detecting and correcting
for bias, bootstrapping and building ensemble imputations, and mapping results.
Author: Nicholas L. Crookston, Andrew O. Finley, John Coulston (Sunil Arya and David Mount for ANN)
Maintainer: Nicholas L. Crookston <ncrookston.fs@gmail.com>
Diff between yaImpute versions 1.0-26 dated 2015-07-20 and 1.0-29 dated 2017-12-10
DESCRIPTION | 14 +++++++------- MD5 | 17 +++++++++-------- NAMESPACE | 4 ++-- NEWS | 9 +++++++++ R/ann.R | 2 +- R/yai.R | 22 +++++++++------------- data/MoscowMtStJoe.RData |binary data/TallyLake.RData |binary src/annImpute.cpp | 4 ++-- src/yaImpute_init.c |only 10 files changed, 39 insertions(+), 33 deletions(-)
Title: Diffs for R Objects
Description: Generate a colorized diff of two R objects for an intuitive
visualization of their differences.
Author: Brodie Gaslam [aut, cre],
Michael B. Allen [ctb, cph] (Original C implementation of Myers Diff
Algorithm)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between diffobj versions 0.1.7 dated 2017-11-09 and 0.1.8 dated 2017-12-10
DESCRIPTION | 8 ++-- MD5 | 12 +++--- NEWS.md | 9 ++++ R/guides.R | 73 +++++++++++++++++++--------------------- README.md | 9 ++++ tests/testthat/testthat.guide.R | 9 ++++ tests/testthat/testthat.misc.R | 35 ++++++++++++++----- 7 files changed, 100 insertions(+), 55 deletions(-)
Title: Model-Based Clustering and Classification with the Multivariate
Contaminated Normal Distribution
Description: Fits mixtures of multivariate contaminated normal distributions
(with eigen-decomposed scale matrices) via the expectation conditional-
maximization algorithm under a clustering or classification paradigm.
Author: Antonio Punzo, Angelo Mazza, Paul D. McNicholas
Maintainer: Angelo Mazza <a.mazza@unict.it>
Diff between ContaminatedMixt versions 1.2 dated 2017-11-05 and 1.3 dated 2017-12-10
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- R/main.R | 4 ++-- man/CNmixt.Rd | 31 +++++++++++++++++-------------- man/ContaminatedMixt-package.Rd | 4 +++- man/agree.Rd | 6 ++++-- man/dCN.Rd | 7 ++++--- man/extractors.Rd | 2 +- man/m.step.Rd | 6 ++++-- man/predictg.Rd | 4 +++- src/contmixture.c | 2 +- 11 files changed, 54 insertions(+), 42 deletions(-)
More information about ContaminatedMixt at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-14 0.7-5
2012-04-03 0.7-4
2010-12-05 0.7-1
2010-01-06 0.6.3
2009-09-22 0.6.1
2009-09-03 0.6
2009-03-19 0.5
2009-03-16 0.4