Wed, 13 Dec 2017

Package spectrolab updated to version 0.0.4 with previous version 0.0.3 dated 2017-11-17

Title: Class and Methods for Hyperspectral Data
Description: Input/Output, processing and visualization of spectra taken with different spectrometers, including SVC (Spectra Vista), ASD and PSR (Spectral Evolution). Implements an S3 class 'spectra' that other packages can build on. Provides methods to access, plot, manipulate, splice sensor overlap, vector normalize and smooth spectra.
Author: Jose Eduardo Meireles [aut, cre], Anna K. Schweiger [aut], Jeannine Cavender-Bares [aut]
Maintainer: Jose Eduardo Meireles <meireles@umn.edu>

Diff between spectrolab versions 0.0.3 dated 2017-11-17 and 0.0.4 dated 2017-12-13

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 NEWS.md                                                                       |   13 +
 R/getters_and_setters.R                                                       |   19 +-
 R/internal_utils.R                                                            |   59 ++++---
 R/math_operator_overloads.R                                                   |    2 
 R/plotting_functions.R                                                        |    4 
 R/spectra.R                                                                   |   29 ++-
 R/transform_spectra.R                                                         |    2 
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 man/Ops.spectra.Rd                                                            |    2 
 man/apply_by_band.Rd                                                          |    2 
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 man/i_is_index.Rd                                                             |   18 --
 man/i_names.Rd                                                                |    9 -
 man/names-set-.spectra.Rd                                                     |    5 
 man/plot_interactive.Rd                                                       |    2 
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Package ltmle updated to version 1.0-1 with previous version 1.0-0 dated 2017-10-06

Title: Longitudinal Targeted Maximum Likelihood Estimation
Description: Targeted Maximum Likelihood Estimation (TMLE) of treatment/censoring specific mean outcome or marginal structural model for point-treatment and longitudinal data.
Author: Joshua Schwab [aut, cre], Samuel Lendle [aut], Maya Petersen [aut], Mark van der Laan [aut], Susan Gruber [ctb]
Maintainer: Joshua Schwab <jschwab77@berkeley.edu>

Diff between ltmle versions 1.0-0 dated 2017-10-06 and 1.0-1 dated 2017-12-13

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Package rcongresso updated to version 0.3.1 with previous version 0.3.0 dated 2017-11-30

Title: Wraps the API for the Brazilian Chamber of Deputies
Description: Provides propositions, votings, deputies and parties data from Brazilian Chamber of Deputies <https://dadosabertos.camara.leg.br> in data frames.
Author: Paulo Vinícius Soares [aut, cre], Nazareno Andrade [aut], Laboratório Analytics (UFCG) [cph, fnd]
Maintainer: Paulo Vinícius Soares <paulo.soares@ccc.ufcg.edu.br>

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Package RIA updated to version 1.3.0 with previous version 1.2.0 dated 2017-08-11

Title: Radiomics Image Analysis Toolbox for Grayscale Images
Description: Radiomics image analysis toolbox for grayscale 2D and 3D images. RIA calculates first-order, gray level co-occurrence matrix, gray level run length matrix and geometry-based statistics. Almost all calculations are done using vectorized formulas to optimize run speeds. Calculation of several thousands of parameters only takes minutes on a single core of a conventional PC.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <marton.kolossvary@cirg.hu>

Diff between RIA versions 1.2.0 dated 2017-08-11 and 1.3.0 dated 2017-12-13

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New package rbacon with initial version 2.3.0
Package: rbacon
Type: Package
Title: Age-Depth Modelling using Bayesian Statistics
Version: 2.3.0
Date: 2017-12-2
Authors@R: c( person("Maarten", "Blaauw", email = "maarten.blaauw@qub.ac.uk", role = c("aut", "cre")), person("J. Andres", "Christen", email = "jac@cimat.mx", role = "aut"), person("Ted", "Belding", role = "cph"), person("James", "Theiler", email = "", role = "cph"), person("Brian", "Gough", email = "", role = "cph"), person("Charles", "Karney", email = "", role = "cph"))
Description: Bacon is an approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for deposits, through combining radiocarbon and other dates with prior information. See Blaauw and Christen (2011) <doi:10.1214/11-BA618>.
License: GPL (>= 2)
NeedsCompilation: yes
Imports: Rcpp (>= 0.12.12), coda (>= 0.19-1), grDevices, graphics, stats, utils
LinkingTo: Rcpp
RoxygenNote: 6.0.1
Packaged: 2017-12-13 09:42:25 UTC; maarten
Author: Maarten Blaauw [aut, cre], J. Andres Christen [aut], Ted Belding [cph], James Theiler [cph], Brian Gough [cph], Charles Karney [cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Repository: CRAN
Date/Publication: 2017-12-13 18:15:03 UTC

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Package psychmeta updated to version 0.1.3 with previous version 0.1.2 dated 2017-11-16

Title: Psychometric Meta-Analysis Toolkit
Description: Tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Includes tools for converting effect sizes, computing sporadic artifact corrections, reshaping meta-analytic databases, computing multivariate corrections for range variation, and more.
Author: Jeffrey A. Dahlke [aut, cre], Brenton M. Wiernik [aut], Michael T. Brannick [ctb], Jack Kostal [ctb], Sean Potter [ctb], Yuejia (Mandy) Teng [ctb]
Maintainer: Jeffrey A. Dahlke <dahlk068@umn.edu>

Diff between psychmeta versions 0.1.2 dated 2017-11-16 and 0.1.3 dated 2017-12-13

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New package pccc with initial version 1.0.0
Package: pccc
Title: Pediatric Complex Chronic Conditions
Version: 1.0.0
Authors@R: c( person("Peter", "DeWitt", , "dewittpe@gmail.com", role = c("aut")), person("Tell", "Bennett", , "tell.bennett@ucdenver.edu", role = c("aut")), person("James", "Feinstein", , "james.feinstein@ucdenver.edu", role = c("aut")), person("Seth", "Russell", , "seth.russell@ucdenver.edu", role = c("aut", "cre")) )
Description: An implementation of the pediatric complex chronic conditions (CCC) classification system using R and C++.
Depends: R (>= 3.0.2)
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: dplyr (>= 0.7.0), Rcpp (>= 0.12.11)
Suggests: covr, knitr, rmarkdown, testthat, readr
RoxygenNote: 6.0.1
LinkingTo: Rcpp (>= 0.12.11)
VignetteBuilder: knitr
URL: https://github.com/CUD2V/pccc
BugReports: https://github.com/CUD2V/pccc/issues
NeedsCompilation: yes
Packaged: 2017-12-13 15:54:45 UTC; seth
Author: Peter DeWitt [aut], Tell Bennett [aut], James Feinstein [aut], Seth Russell [aut, cre]
Maintainer: Seth Russell <seth.russell@ucdenver.edu>
Repository: CRAN
Date/Publication: 2017-12-13 18:33:31 UTC

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New package GENEAsphere with initial version 1.4
Package: GENEAsphere
Type: Package
Title: Visualisation of Raw or Segmented Accelerometer Data
Version: 1.4
Date: 2017-11-24
Author: Mango Solutions [aut, cre], Joss Langford [aut, cre], Charles Sweetland [aut, cre], Activinsights Ltd [cph]
Maintainer: Charles Sweetland <charles@Sweetland-solutions.co.uk>
Description: Creates visualisations in two and three dimensions of simulated data based on detected segments or raw accelerometer data.
License: GPL-3 | file LICENSE
LazyData: yes
Depends: ggplot2, rgl, MASS, misc3d, GENEAread
Suggests: knitr, rmarkdown
RoxygenNote: 6.0.1
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2017-12-13 15:54:32 UTC; ActivInsights
Repository: CRAN
Date/Publication: 2017-12-13 18:09:09 UTC

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Package rgl updated to version 0.98.22 with previous version 0.98.1 dated 2017-03-08

Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including functions modelled on base graphics (plot3d(), etc.) as well as functions for constructing representations of geometric objects (cube3d(), etc.). Output may be on screen using OpenGL, or to various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch@stats.uwo.ca>, and others (see README)
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>

Diff between rgl versions 0.98.1 dated 2017-03-08 and 0.98.22 dated 2017-12-13

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Package party updated to version 1.2-4 with previous version 1.2-3 dated 2017-04-12

Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning. The core of the package is ctree(), an implementation of conditional inference trees which embed tree-structured regression models into a well defined theory of conditional inference procedures. This non-parametric class of regression trees is applicable to all kinds of regression problems, including nominal, ordinal, numeric, censored as well as multivariate response variables and arbitrary measurement scales of the covariates. Based on conditional inference trees, cforest() provides an implementation of Breiman's random forests. The function mob() implements an algorithm for recursive partitioning based on parametric models (e.g. linear models, GLMs or survival regression) employing parameter instability tests for split selection. Extensible functionality for visualizing tree-structured regression models is available. The methods are described in Hothorn et al. (2006) <doi:10.1198/106186006X133933>, Zeileis et al. (2008) <doi:10.1198/106186008X319331> and Strobl et al. (2007) <doi:10.1186/1471-2105-8-25>.
Author: Torsten Hothorn [aut, cre] (0000-0001-8301-0471), Kurt Hornik [aut], Carolin Strobl [aut], Achim Zeileis [aut] (0000-0003-0918-3766)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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Package libcoin updated to version 1.0-1 with previous version 1.0-0 dated 2017-12-12

Title: Linear Test Statistics for Permutation Inference
Description: Basic infrastructure for linear test statistics and permutation inference in the framework of Strasser and Weber (1999) <http://epub.wu.ac.at/102/>. This package must not be used by end-users. CRAN package 'coin' implements all user interfaces and is ready to be used by anyone.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between libcoin versions 1.0-0 dated 2017-12-12 and 1.0-1 dated 2017-12-13

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Package backports updated to version 1.1.2 with previous version 1.1.1 dated 2017-09-25

Title: Reimplementations of Functions Introduced Since R-3.0.0
Description: Implementations of functions which have been introduced in R since version 3.0.0. The backports are conditionally exported which results in R resolving the function names to the version shipped with R (if available) and uses the implemented backports as fallback. This way package developers can make use of the new functions without worrying about the minimum required R version.
Author: Michel Lang [cre, aut] (0000-0001-9754-0393)
Maintainer: Michel Lang <michellang@gmail.com>

Diff between backports versions 1.1.1 dated 2017-09-25 and 1.1.2 dated 2017-12-13

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Package mexhaz updated to version 1.4 with previous version 1.3 dated 2017-03-16

Title: Mixed Effect Excess Hazard Models
Description: Fit flexible (excess) hazard regression models with the possibility of including non-proportional effects of covariables and of adding a random effect at the cluster level (corresponding to a shared frailty).
Author: Hadrien Charvat, Aurelien Belot
Maintainer: Hadrien Charvat <chadrien@ncc.go.jp>

Diff between mexhaz versions 1.3 dated 2017-03-16 and 1.4 dated 2017-12-13

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Package TropFishR updated to version 1.2 with previous version 1.1.4 dated 2017-07-12

Title: Tropical Fisheries Analysis with R
Description: A compilation of fish stock assessment methods for the analysis of length-frequency data in the context of data-poor fisheries. Includes traditional methods and examples included in the FAO Manual by P. Sparre and S.C. Venema (1998), "Introduction to tropical fish stock assessment" (<http://www.fao.org/docrep/W5449E/W5449E00.htm>), as well as other more recent methods.
Author: Tobias K. Mildenberger, Marc H. Taylor, Matthias Wolff
Maintainer: Tobias K. Mildenberger <t.k.mildenberger@gmail.com>

Diff between TropFishR versions 1.1.4 dated 2017-07-12 and 1.2 dated 2017-12-13

 DESCRIPTION             |   23 +--
 MD5                     |   87 ++++++-----
 NAMESPACE               |    3 
 R/ELEFAN.R              |  215 ++++++++++++++++++++++-------
 R/ELEFAN_GA.R           |   32 ++--
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 R/M_empirical.R         |    2 
 R/catchCurve.R          |  350 ++++++++++++++++++++++++++++++------------------
 R/date2yeardec.R        |   13 +
 R/lfqFitCurves.R        |   46 +++---
 R/lfqModify.R           |  164 +++++++++++++++++-----
 R/lfqRestructure.R      |  141 +++++++++++--------
 R/plot.Bhattacharya.R   |    1 
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 R/plot.catchCurve.R     |  268 +++++++++++++++++++++++++++++-------
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 R/yeardec2date.R        |    8 -
 README.md               |   26 ++-
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 50 files changed, 1535 insertions(+), 787 deletions(-)

More information about TropFishR at CRAN
Permanent link

Package lexRankr updated to version 0.5.0 with previous version 0.4.1 dated 2017-05-10

Title: Extractive Summarization of Text with the LexRank Algorithm
Description: An R implementation of the LexRank algorithm described by G. Erkan and D. R. Radev (2004) <DOI:10.1613/jair.1523>.
Author: Adam Spannbauer [aut, cre], Bryan White [ctb]
Maintainer: Adam Spannbauer <spannbaueradam@gmail.com>

Diff between lexRankr versions 0.4.1 dated 2017-05-10 and 0.5.0 dated 2017-12-13

 DESCRIPTION                                         |   11 
 LICENSE                                             |    4 
 MD5                                                 |   87 +--
 NAMESPACE                                           |   32 -
 NEWS.md                                             |   55 +-
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 R/lexRank.R                                         |  106 +--
 R/lexRankFromSimil.R                                |  151 ++---
 R/sentenceParse.R                                   |   82 +--
 R/sentenceSimil.R                                   |  181 ++----
 R/sentenceTokenParse.R                              |   68 +-
 R/sentence_parser.R                                 |   21 
 R/tokenize.R                                        |  141 ++---
 R/unnest_sentences.R                                |  143 +++--
 README.md                                           |  436 ++++++++--------
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 inst/doc/Analyzing_Twitter_with_LexRankr.html       |  536 ++++++++++----------
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 tests/testthat/test-bind_lexrank_.R                 |  245 ++++-----
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 tests/testthat/test-lexRankFromSimil.R              |  156 ++---
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 tests/testthat/test-tokenize.R                      |  288 +++++-----
 tests/testthat/test-unnest_sentences.R              |  128 ++--
 tests/testthat/test-unnest_sentences_.R             |  130 ++--
 vignettes/Analyzing_Twitter_with_LexRankr.html.asis |    8 
 46 files changed, 2443 insertions(+), 2327 deletions(-)

More information about lexRankr at CRAN
Permanent link

New package PUlasso with initial version 1.2
Package: PUlasso
Type: Package
Title: High-Dimensional Variable Selection with Presence-Only Data
Version: 1.2
Date: 2017-12-11
Authors@R: c(person("Hyebin", "Song", role = c("aut", "cre"), email = "hsong@stat.wisc.edu"), person("Garvesh", "Raskutti", role="aut",email="raskutti@stat.wisc.edu"))
Description: Efficient algorithm for solving PU (Positive and Unlabelled) problem in low or high dimensional setting with lasso or group lasso penalty. The algorithm uses Maximization-Minorization and (block) coordinate descent. Sparse calculation and parallel computing via 'OpenMP' are supported for the computational speed-up. See Hyebin Song, Garvesh Raskutti (2017) <arXiv:1711.08129>.
License: GPL-2
Imports: Rcpp (>= 0.12.8), methods
Depends: R(>= 2.10), Matrix, bigmemory
LinkingTo: Rcpp, BH, bigmemory, RcppEigen
RoxygenNote: 6.0.1
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
URL: https://arxiv.org/abs/1711.08129
BugReports: https://github.com/hsong1/PUlasso/issues
NeedsCompilation: yes
Packaged: 2017-12-13 01:05:42 UTC; Hyebin
Author: Hyebin Song [aut, cre], Garvesh Raskutti [aut]
Maintainer: Hyebin Song <hsong@stat.wisc.edu>
Repository: CRAN
Date/Publication: 2017-12-13 09:37:51 UTC

More information about PUlasso at CRAN
Permanent link

Package binaryLogic updated to version 0.3.9 with previous version 0.3.5 dated 2016-06-24

Title: Binary Logic
Description: Provides the binary S3 class. The instance of binary is used to convert a decimal number (Base10) to a binary number (Base2). The Class provides some features e.G. shift(), rotate(), summary(). Based on logical vectors.
Author: Daniel Dörrhöfer [aut, cre], Aaron Rudkin [ctb]
Maintainer: Daniel Dörrhöfer <ddo@openmailbox.org>

Diff between binaryLogic versions 0.3.5 dated 2016-06-24 and 0.3.9 dated 2017-12-13

 binaryLogic-0.3.5/binaryLogic/LICENSE      |only
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 binaryLogic-0.3.9/binaryLogic/R/BinaryS3.R |   26 ++++++++++-----
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 5 files changed, 55 insertions(+), 43 deletions(-)

More information about binaryLogic at CRAN
Permanent link

New package tinytex with initial version 0.1
Package: tinytex
Type: Package
Title: Helper Functions to Install and Maintain 'LaTeX', and Compile 'LaTeX' Documents
Version: 0.1
Authors@R: c( person("Yihui", "Xie", role = c("aut", "cre", "cph"), email = "xie@yihui.name", comment = c(ORCID = "0000-0003-0645-5666")), person(family = "RStudio, Inc.", role = "cph"), person() )
Description: Helper functions to install and maintain the 'LaTeX' distribution named 'TinyTeX' (<https://yihui.name/tinytex/>), a lightweight and portable version of 'TeX Live'. This package also contains helper functions to compile 'LaTeX' documents, and install missing 'LaTeX' packages automatically.
Suggests: testit
License: MIT + file LICENSE
URL: https://yihui.name/tinytex/
BugReports: https://github.com/yihui/tinytex/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-12-11 18:16:50 UTC; yihui
Author: Yihui Xie [aut, cre, cph] (0000-0003-0645-5666), RStudio, Inc. [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Repository: CRAN
Date/Publication: 2017-12-13 09:12:30 UTC

More information about tinytex at CRAN
Permanent link

Package testthat updated to version 2.0.0 with previous version 1.0.2 dated 2016-04-23

Title: Unit Testing for R
Description: Software testing is important, but, in part because it is frustrating and boring, many of us avoid it. 'testthat' is a testing framework for R that is easy learn and use, and integrates with your existing 'workflow'.
Author: Hadley Wickham [aut, cre], RStudio [cph, fnd], R Core team [ctb] (Implementation of utils::recover())
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between testthat versions 1.0.2 dated 2016-04-23 and 2.0.0 dated 2017-12-13

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Package svars updated to version 1.0.1 with previous version 1.0.0 dated 2017-11-09

Title: Data-Driven Identification of SVAR Models
Description: Implements data-driven identification methods for structural vector autoregressive (SVAR) models. Based on an existing VAR model object (provided by e.g. VAR() from the 'vars' package), the structural impact matrix is obtained via data-driven identification techniques (i.e. changes in volatility (Rigobon, R. (2003) <doi:10.1162/003465303772815727>), least dependent innovations (Herwartz, H., Ploedt, M., (2016) <doi:10.1016/j.jimonfin.2015.11.001>) or non-Gaussian maximum likelihood (Lanne, M., Meitz, M., Saikkonen, P. (2017) <doi:10.1016/j.jeconom.2016.06.002>).
Author: Alexander Lange [aut, cre], Bernhard Dalheimer [aut], Helmut Herwartz [aut], Simone Maxand [aut], Hannes Riebl [ctb]
Maintainer: Alexander Lange <alexander.lange@uni-goettingen.de>

Diff between svars versions 1.0.0 dated 2017-11-09 and 1.0.1 dated 2017-12-13

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New package POPdemog with initial version 1.0.3
Package: POPdemog
Type: Package
Version: 1.0.3
Title: Plot Population Demographic History
Date: 2017-12-07
Author: Ying Zhou
Maintainer: Ying Zhou <yz001@uw.edu>
Description: Plot demographic graphs for single/multiple populations from coalescent simulation program input. Currently, this package can support the 'ms', 'msHot', 'MaCS', 'msprime', 'SCRM', and 'Cosi2' simulation programs. It does not check the simulation program input for correctness, but assumes the simulation program input has been validated by the simulation program. More features will be added to this package in the future, please check the 'GitHub' page for the latest updates: <https://github.com/YingZhou001/POPdemog>.
License: GPL-2
RoxygenNote: 6.0.1
Suggests: knitr, maps, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-12-12 20:48:18 UTC; y
Repository: CRAN
Date/Publication: 2017-12-13 09:15:21 UTC

More information about POPdemog at CRAN
Permanent link

Package liftr updated to version 0.8 with previous version 0.7 dated 2017-09-29

Title: Containerize R Markdown Documents
Description: Persistent reproducible reporting by containerization of R Markdown documents.
Author: Nan Xiao [aut, cre] (0000-0002-0250-5673), Miao-Zhu Li [ctb], Teng-Fei Yin [ctb]
Maintainer: Nan Xiao <me@nanx.me>

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Package corpustools updated to version 0.3.1 with previous version 0.3 dated 2017-10-03

Title: Managing, Querying and Analyzing Tokenized Text
Description: Provides text analysis in R, focusing on the use of a tokenized text format. In this format, the positions of tokens are maintained, and each token can be annotated (e.g., part-of-speech tags, dependency relations). Prominent features include advanced Lucene-like querying for specific tokens or contexts (e.g., documents, sentences), similarity statistics for words and documents, exporting to DTM for compatibility with many text analysis packages, and the possibility to reconstruct original text from tokens to facilitate interpretation.
Author: Kasper Welbers and Wouter van Atteveldt
Maintainer: Kasper Welbers <kasperwelbers@gmail.com>

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Package SensoMineR updated to version 1.23 with previous version 1.20 dated 2014-04-13

Title: Sensory Data Analysis
Description: Statistical Methods to Analyse Sensory Data. SensoMineR: A package for sensory data analysis. S. Le and F. Husson (2008) <DOI:10.1111/j.1745-459X.2007.00137.x>.
Author: Francois Husson, Sebastien Le, Marine Cadoret
Maintainer: Francois Husson <husson@agrocampus-ouest.fr>

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Package RVowpalWabbit updated to version 0.0.10 with previous version 0.0.9 dated 2017-03-06

Title: R Interface to the Vowpal Wabbit
Description: The 'Vowpal Wabbit' project is a fast out-of-core learning system sponsored by Microsoft Research (having started at Yahoo! Research) and written by John Langford along with a number of contributors. This R package does not include the distributed computing implementation of the cluster/ directory of the upstream sources. Use of the software as a network service is also not directly supported as the aim is a simpler direct call from R for validation and comparison. Note that this package contains an embedded older version of 'Vowpal Wabbit'. The package 'rvw' at the GitHub repo <https://github.com/eddelbuettel/rvw> can provide an alternative using an external 'Vowpal Wabbit' library installation.
Author: Dirk Eddelbuettel <edd@debian.org>
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RVowpalWabbit versions 0.0.9 dated 2017-03-06 and 0.0.10 dated 2017-12-13

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Package Rdpack updated to version 0.5-1 with previous version 0.4-22 dated 2017-10-02

Title: Update and Manipulate Rd Documentation Objects
Description: Functions for manipulation of Rd objects, including function reprompt() for updating existing Rd documentation for functions, methods and classes, function rebib() for import of references from 'bibtex' files, a macro for importing 'bibtex' references which can be used in Rd files and 'roxygen2' comments and other convenience functions for references.
Author: Georgi N. Boshnakov
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>

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Package kst updated to version 0.2-2 with previous version 0.2-1 dated 2014-01-11

Title: Knowledge Space Theory
Description: Knowledge space theory by Doignon and Falmagne (1999) <doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical framework, which proposes mathematical formalisms to operationalize knowledge structures in a particular domain. The 'kst' package provides basic functionalities to generate, handle, and manipulate knowledge structures and knowledge spaces.
Author: Christina Stahl [aut], David Meyer [aut], Cord Hockemeyer [ctb, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>

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Package hysteresis updated to version 2.6 with previous version 2.5 dated 2015-01-23

Title: Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses
Description: Fit, summarize and plot sinusoidal hysteretic processes using: two-step simple harmonic least squares, ellipse-specific non-linear least squares, the direct method, geometric least squares or linear least squares.
Author: Spencer Maynes, Fan Yang, and Anne Parkhurst
Maintainer: Anne Parkhurst <aparkhurst@unl.edu>

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Package fst updated to version 0.8.0 with previous version 0.7.2 dated 2017-01-12

Title: Lightning Fast Serialization of Data Frames for R
Description: Multithreaded serialization of compressed data frames using the 'fst' format. Allows for random (column and row) access of stored data.
Author: Mark Klik [aut, cre, cph]
Maintainer: Mark Klik <markklik@gmail.com>

Diff between fst versions 0.7.2 dated 2017-01-12 and 0.8.0 dated 2017-12-13

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Package doSNOW updated to version 1.0.16 with previous version 1.0.15 dated 2017-09-29

Title: Foreach Parallel Adaptor for the 'snow' Package
Description: Provides a parallel backend for the %dopar% function using the snow package of Tierney, Rossini, Li, and Sevcikova.
Author: Rich Calaway [cre], Microsoft Corporation [aut, cph], Stephen Weston [aut]
Maintainer: Rich Calaway <richcala@microsoft.com>

Diff between doSNOW versions 1.0.15 dated 2017-09-29 and 1.0.16 dated 2017-12-13

 DESCRIPTION     |   15 +++++++++------
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 NEWS            |    3 +++
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 tests/doRUnit.R |    2 +-
 5 files changed, 18 insertions(+), 12 deletions(-)

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Package GJRM updated to version 0.1-4 with previous version 0.1-3 dated 2017-11-17

Title: Generalised Joint Regression Modelling
Description: Routines for fitting various joint regression models, with several types of covariate effects, in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>

Diff between GJRM versions 0.1-3 dated 2017-11-17 and 0.1-4 dated 2017-12-13

 ChangeLog       |   10 ++++--
 DESCRIPTION     |    6 ++--
 MD5             |   10 +++---
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 6 files changed, 95 insertions(+), 24 deletions(-)

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Package MAGNAMWAR updated to version 2.0.1 with previous version 2.0.0 dated 2017-08-28

Title: A Pipeline for Meta-Genome Wide Association
Description: Correlates variation within the meta-genome to target species phenotype variations in meta-genome with association studies. Follows the pipeline described in Chaston, J.M. et al. (2014) <doi:10.1128/mBio.01631-14>.
Author: Corinne Sexton [aut], John Chaston [aut, cre], Hayden Smith [ctb]
Maintainer: John Chaston <john_chaston@byu.edu>

Diff between MAGNAMWAR versions 2.0.0 dated 2017-08-28 and 2.0.1 dated 2017-12-13

 DESCRIPTION             |    8 ++++----
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