Title: Class and Methods for Hyperspectral Data
Description: Input/Output, processing and visualization of spectra taken with different spectrometers, including SVC (Spectra Vista), ASD and PSR (Spectral Evolution). Implements an S3 class 'spectra' that other packages can build on. Provides methods to access, plot, manipulate, splice sensor overlap, vector normalize and smooth spectra.
Author: Jose Eduardo Meireles [aut, cre],
Anna K. Schweiger [aut],
Jeannine Cavender-Bares [aut]
Maintainer: Jose Eduardo Meireles <meireles@umn.edu>
Diff between spectrolab versions 0.0.3 dated 2017-11-17 and 0.0.4 dated 2017-12-13
DESCRIPTION | 10 - MD5 | 55 +++--- NEWS.md | 13 + R/getters_and_setters.R | 19 +- R/internal_utils.R | 59 ++++--- R/math_operator_overloads.R | 2 R/plotting_functions.R | 4 R/spectra.R | 29 ++- R/transform_spectra.R | 2 README.md | 13 - build/vignette.rds |binary inst/doc/advanced_spectrolab.html | 82 +++++----- inst/doc/introduction_to_spectrolab.html | 14 - inst/doc/match_sensors.pdf |binary man/Ops.spectra.Rd | 2 man/apply_by_band.Rd | 2 man/i_is_increasing.Rd | 2 man/i_is_index.Rd | 18 -- man/i_names.Rd | 9 - man/names-set-.spectra.Rd | 5 man/plot_interactive.Rd | 2 man/plot_regions.Rd | 2 man/sub-.spectra.Rd | 13 - tests/testthat/test_i_is_index_function.R |only tests/testthat/test_i_names_ctor.R | 48 +++-- vignettes/advanced_spectrolab_files/figure-html/unnamed-chunk-2-1.png |binary vignettes/advanced_spectrolab_files/figure-html/unnamed-chunk-4-1.png |binary vignettes/introduction_to_spectrolab_files/figure-html/unnamed-chunk-12-1.png |binary vignettes/introduction_to_spectrolab_files/figure-html/unnamed-chunk-14-1.png |binary 29 files changed, 226 insertions(+), 179 deletions(-)
Title: Longitudinal Targeted Maximum Likelihood Estimation
Description: Targeted Maximum Likelihood Estimation (TMLE) of
treatment/censoring specific mean outcome or marginal structural model for
point-treatment and longitudinal data.
Author: Joshua Schwab [aut, cre],
Samuel Lendle [aut],
Maya Petersen [aut],
Mark van der Laan [aut],
Susan Gruber [ctb]
Maintainer: Joshua Schwab <jschwab77@berkeley.edu>
Diff between ltmle versions 1.0-0 dated 2017-10-06 and 1.0-1 dated 2017-12-13
ltmle-1.0-0/ltmle/tests/test-all.R |only ltmle-1.0-1/ltmle/DESCRIPTION | 8 ++++---- ltmle-1.0-1/ltmle/MD5 | 10 +++++----- ltmle-1.0-1/ltmle/NEWS | 4 ++++ ltmle-1.0-1/ltmle/R/GeneralUtilities.R | 9 --------- ltmle-1.0-1/ltmle/R/ltmle.R | 20 +++++++------------- ltmle-1.0-1/ltmle/tests/testthat.R |only 7 files changed, 20 insertions(+), 31 deletions(-)
Title: Wraps the API for the Brazilian Chamber of Deputies
Description: Provides propositions, votings, deputies and parties data from
Brazilian Chamber of Deputies <https://dadosabertos.camara.leg.br> in data frames.
Author: Paulo Vinícius Soares [aut, cre],
Nazareno Andrade [aut],
Laboratório Analytics (UFCG) [cph, fnd]
Maintainer: Paulo Vinícius Soares <paulo.soares@ccc.ufcg.edu.br>
Diff between rcongresso versions 0.3.0 dated 2017-11-30 and 0.3.1 dated 2017-12-13
DESCRIPTION | 6 +++--- MD5 | 15 +++++++++------ R/proposicoes.R | 2 -- build/vignette.rds |binary inst/doc/introducao-rcongresso.html | 12 ++++++------ inst/doc/purrr-e-rcongresso.html | 4 ++-- inst/doc/utilizando-fetch-proposicao.R |only inst/doc/utilizando-fetch-proposicao.Rmd |only inst/doc/utilizando-fetch-proposicao.html |only vignettes/utilizando-fetch-proposicao.Rmd | 24 +++++++++++++++++++----- 10 files changed, 39 insertions(+), 24 deletions(-)
Title: Radiomics Image Analysis Toolbox for Grayscale Images
Description: Radiomics image analysis toolbox for grayscale 2D and 3D images. RIA calculates first-order,
gray level co-occurrence matrix, gray level run length matrix and geometry-based statistics.
Almost all calculations are done using vectorized formulas to optimize run speeds. Calculation
of several thousands of parameters only takes minutes on a single core of a conventional PC.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <marton.kolossvary@cirg.hu>
Diff between RIA versions 1.2.0 dated 2017-08-11 and 1.3.0 dated 2017-12-13
DESCRIPTION | 10 MD5 | 77 ++-- NAMESPACE | 3 R/DICOM_codes.R | 14 R/NRS.R | 14 R/Non_NRS.R | 14 R/ZZZ.R | 9 R/create_header.R | 2 R/discretize.R | 15 R/first_order.R | 15 R/geometry.R | 39 ++ R/glcm.R | 22 + R/glcm_all.R | 19 - R/glcm_stat.R | 32 + R/glcm_stat_all.R |only R/glrlm.R | 22 + R/glrlm_all.R | 14 R/glrlm_stat.R | 14 R/glrlm_stat_all.R |only R/load_dicom.R | 82 ++++- R/radiomics_all.R |only README.md |only inst/CITATION | 25 + inst/doc/RIA.R | 51 +-- inst/doc/RIA.Rmd | 788 +++++++++++++++++++++++++----------------------- inst/doc/RIA.html | 814 +++++++++++++++++++++++++++++++++++++++++++++----- man/DICOM_codes.Rd | 15 man/NRS.Rd | 15 man/Non_NRS.Rd | 15 man/discretize.Rd | 16 man/first_order.Rd | 16 man/geometry.Rd | 17 + man/glcm.Rd | 22 + man/glcm_all.Rd | 20 + man/glcm_stat.Rd | 16 man/glcm_stat_all.Rd |only man/glrlm.Rd | 22 + man/glrlm_all.Rd | 15 man/glrlm_stat.Rd | 16 man/glrlm_stat_all.Rd |only man/load_dicom.Rd | 35 ++ man/radiomics_all.Rd |only vignettes/RIA.Rmd | 788 +++++++++++++++++++++++++----------------------- 43 files changed, 2209 insertions(+), 914 deletions(-)
Title: Psychometric Meta-Analysis Toolkit
Description: Tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Includes tools for converting effect sizes, computing sporadic artifact corrections, reshaping meta-analytic databases, computing multivariate corrections for range variation, and more.
Author: Jeffrey A. Dahlke [aut, cre],
Brenton M. Wiernik [aut],
Michael T. Brannick [ctb],
Jack Kostal [ctb],
Sean Potter [ctb],
Yuejia (Mandy) Teng [ctb]
Maintainer: Jeffrey A. Dahlke <dahlk068@umn.edu>
Diff between psychmeta versions 0.1.2 dated 2017-11-16 and 0.1.3 dated 2017-12-13
DESCRIPTION | 10 MD5 | 149 +-- NAMESPACE | 1 NEWS | 28 R/correct_d.R | 6 R/correct_r.R | 37 R/create_ad.R | 1373 +++++++++++++++++------------------- R/create_ad_wrappers.R |only R/data_wrangling.R | 17 R/estimate_artifacts.R | 13 R/estimate_var_artifacts.R | 33 R/estimate_var_rho_tsa.R | 4 R/filters.R | 73 + R/heterogeneity.R | 316 ++++---- R/impute_artifacts.R | 8 R/ma_d.R | 79 -- R/ma_d_bb.R | 36 R/ma_d_ic.R | 63 - R/ma_d_order2.R | 39 - R/ma_generic.R | 34 R/ma_r.R | 303 ++++++- R/ma_r_ad.R | 23 R/ma_r_ad_uvdrr.R | 3 R/ma_r_ad_uvirr.R | 7 R/ma_r_bb.R | 37 R/ma_r_ic.R | 239 ++++-- R/ma_r_order2.R | 40 - R/ma_wrappers.R | 18 R/print_methods.R | 34 R/remove_dependency.R | 12 R/reshape.R | 17 R/sensitivity.R | 9 R/sensitivity_bootstrap.R | 133 +-- R/sensitivity_cumulative.R | 64 - R/sensitivity_leave1out.R | 60 - R/simulate_d.R | 177 +++- R/simulate_psych.R | 2 R/simulate_r.R | 107 +- README.md | 2 data/data_d_bb_multi.RData |binary data/data_d_meas_multi.RData |binary data/data_r_bvdrr.RData |binary data/data_r_bvirr.RData |binary data/data_r_gonzalezmule_2014.RData |binary data/data_r_mcdaniel_1994.RData |binary data/data_r_mcleod_2007.RData |binary data/data_r_meas.RData |binary data/data_r_meas_multi.RData |binary data/data_r_oh_2009.RData |binary data/data_r_roth_2015.RData |binary data/data_r_uvdrr.RData |binary data/data_r_uvirr.RData |binary man/convert_consistency2reltype.Rd |only man/convert_reltype2consistency.Rd |only man/correct_d.Rd | 8 man/correct_r.Rd | 7 man/correct_r_bvdrr.Rd | 6 man/correct_r_uvdrr.Rd | 6 man/create_ad.Rd | 32 man/create_ad_array.Rd | 2 man/create_ad_group.Rd | 2 man/create_ad_int.Rd | 26 man/create_ad_int_group.Rd | 2 man/create_ad_tsa.Rd | 29 man/create_ad_tsa_group.Rd | 2 man/estimate_artifacts.Rd | 10 man/estimate_var_artifacts.Rd | 10 man/heterogeneity.Rd | 4 man/ma_d.Rd | 31 man/ma_d_ic.Rd | 35 man/ma_r.Rd | 95 ++ man/ma_r_ic.Rd | 29 man/ma_r_order2.Rd | 2 man/organize_moderators.Rd | 2 man/reshape_wide2long.Rd | 3 man/simulate_d_database.Rd | 21 man/simulate_r_database.Rd | 2 77 files changed, 2339 insertions(+), 1633 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch@stats.uwo.ca>, and others (see README)
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>
Diff between rgl versions 0.98.1 dated 2017-03-08 and 0.98.22 dated 2017-12-13
DESCRIPTION | 6 MD5 | 117 - NAMESPACE | 4 R/animate.R | 9 R/axes.R | 9 R/convertScene.R | 95 - R/obj.R | 155 + R/playwidget.R | 9 R/rglcontroller.R | 3 R/rglwidget.R | 18 R/subscenes.R | 2 R/zzz.R | 10 build/vignette.rds |binary demo/00Index | 3 demo/shinyToggle.R |only inst/NEWS | 47 inst/doc/WebGL.R | 2 inst/doc/WebGL.Rmd | 8 inst/doc/WebGL.html | 128 - inst/doc/legacyWebGL.html | 1632 +++++++++++++---- inst/doc/rgl.html | 2362 +++++++++++++++++--------- inst/htmlwidgets/lib/rglClass/rglClass.src.js | 1546 +++++++++++++---- inst/htmlwidgets/rglPlayer.js | 15 man/ageControl.Rd | 2 man/planes.Rd | 4 man/play3d.Rd | 2 man/plot3d.Rd | 9 man/shiny.Rd | 29 man/snapshot.Rd | 11 man/subscene3d.Rd | 3 man/vertexControl.Rd | 11 man/writeASY.Rd | 3 man/writeOBJ.Rd | 21 src/Background.cpp | 4 src/Background.h | 2 src/ClipPlane.cpp | 2 src/ClipPlane.h | 2 src/LineStripSet.cpp | 2 src/PrimitiveSet.cpp | 2 src/PrimitiveSet.h | 6 src/Shape.cpp | 8 src/Shape.h | 11 src/SphereMesh.cpp | 45 src/SphereMesh.h | 8 src/SphereSet.cpp | 53 src/SphereSet.h | 6 src/SpriteSet.cpp | 6 src/SpriteSet.h | 4 src/Surface.cpp | 4 src/Surface.h | 4 src/TextSet.cpp | 2 src/TextSet.h | 4 src/api.cpp | 6 src/geom.cpp | 1 src/platform.cpp | 12 src/scene.cpp | 9 src/scene.h | 4 src/subscene.cpp | 63 src/subscene.h | 2 vignettes/WebGL.Rmd | 8 60 files changed, 4622 insertions(+), 1933 deletions(-)
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <doi:10.1198/106186008X319331> and
Strobl et al. (2007) <doi:10.1186/1471-2105-8-25>.
Author: Torsten Hothorn [aut, cre] (0000-0001-8301-0471),
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut] (0000-0003-0918-3766)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.2-3 dated 2017-04-12 and 1.2-4 dated 2017-12-13
DESCRIPTION | 19 +++++++++++-------- MD5 | 24 ++++++++++++------------ R/Utils.R | 4 +++- R/internals.R | 3 ++- R/varimp.R | 41 ++++++++++++++++------------------------- build/vignette.rds |binary inst/NEWS | 10 ++++++++++ inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary man/party_intern.Rd | 2 +- man/varimp.Rd | 11 ++++++----- src/IndependenceTest.c | 10 +++++++--- src/Predict.c | 3 +-- 13 files changed, 69 insertions(+), 58 deletions(-)
Title: Linear Test Statistics for Permutation Inference
Description: Basic infrastructure for linear test statistics and permutation
inference in the framework of Strasser and Weber (1999) <http://epub.wu.ac.at/102/>.
This package must not be used by end-users. CRAN package 'coin' implements all
user interfaces and is ready to be used by anyone.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between libcoin versions 1.0-0 dated 2017-12-12 and 1.0-1 dated 2017-12-13
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/NEWS.Rd | 6 ++++++ inst/doc/libcoin.Rnw | 12 +++++++----- inst/doc/libcoin.pdf |binary src/libcoin.c | 11 +++++++---- vignettes/libcoin.Rnw | 12 +++++++----- 7 files changed, 37 insertions(+), 24 deletions(-)
Title: Reimplementations of Functions Introduced Since R-3.0.0
Description: Implementations of functions which have been introduced in
R since version 3.0.0. The backports are conditionally exported which
results in R resolving the function names to the version shipped with R (if
available) and uses the implemented backports as fallback. This way package
developers can make use of the new functions without worrying about the
minimum required R version.
Author: Michel Lang [cre, aut] (0000-0001-9754-0393)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between backports versions 1.1.1 dated 2017-09-25 and 1.1.2 dated 2017-12-13
DESCRIPTION | 10 +++++---- MD5 | 15 ++++++++----- NAMESPACE | 2 + NEWS.md | 5 ++++ R/import.R | 51 +++++++++++++++++++++++++++++----------------- R/valid.factor.R |only R/zzz.R | 2 - man/import.Rd | 13 ++++++++++- man/valid.factor.Rd |only tests/test_valid.factor.R |only 10 files changed, 68 insertions(+), 30 deletions(-)
Title: Mixed Effect Excess Hazard Models
Description: Fit flexible (excess) hazard regression models with the possibility of including non-proportional effects of covariables and of adding a random effect at the cluster level (corresponding to a shared frailty).
Author: Hadrien Charvat, Aurelien Belot
Maintainer: Hadrien Charvat <chadrien@ncc.go.jp>
Diff between mexhaz versions 1.3 dated 2017-03-16 and 1.4 dated 2017-12-13
DESCRIPTION | 8 ++++---- MD5 | 40 ++++++++++++++++++++-------------------- NEWS | 17 +++++++++++++++++ R/mexhaz.R | 30 +++++++++++++----------------- R/predict.mexhaz.R | 8 ++++---- man/mexhaz-package.Rd | 4 ++-- man/mexhaz.Rd | 23 +++++++++++++++++++++-- src/DeltaBs0R.c | 2 +- src/DeltaBs1R.c | 2 +- src/DeltaBs23R.c | 2 +- src/DeltaNsR.c | 2 +- src/DeltaWeibR.c | 16 ++++++++-------- src/FrailtyAdapt.c | 2 +- src/HazardBs0C.c | 2 +- src/HazardBs0R.c | 2 +- src/HazardBs1C.c | 2 +- src/HazardBs1R.c | 2 +- src/HazardBs23C.c | 2 +- src/HazardBs23R.c | 2 +- src/HazardNsC.c | 2 +- src/HazardNsR.c | 2 +- 21 files changed, 102 insertions(+), 70 deletions(-)
Title: Tropical Fisheries Analysis with R
Description: A compilation of fish stock assessment methods for the
analysis of length-frequency data in the context of data-poor
fisheries. Includes traditional methods and examples included in the FAO
Manual by P. Sparre and S.C. Venema (1998), "Introduction to tropical fish
stock assessment"
(<http://www.fao.org/docrep/W5449E/W5449E00.htm>), as well as
other more recent methods.
Author: Tobias K. Mildenberger, Marc H. Taylor, Matthias Wolff
Maintainer: Tobias K. Mildenberger <t.k.mildenberger@gmail.com>
Diff between TropFishR versions 1.1.4 dated 2017-07-12 and 1.2 dated 2017-12-13
DESCRIPTION | 23 +-- MD5 | 87 ++++++----- NAMESPACE | 3 R/ELEFAN.R | 215 ++++++++++++++++++++++------- R/ELEFAN_GA.R | 32 ++-- R/ELEFAN_SA.R | 76 ++++++---- R/M_empirical.R | 2 R/catchCurve.R | 350 ++++++++++++++++++++++++++++++------------------ R/date2yeardec.R | 13 + R/lfqFitCurves.R | 46 +++--- R/lfqModify.R | 164 +++++++++++++++++----- R/lfqRestructure.R | 141 +++++++++++-------- R/plot.Bhattacharya.R | 1 R/plot.VPA.R | 1 R/plot.catchCurve.R | 268 +++++++++++++++++++++++++++++------- R/plot.lfq.R | 307 ++++++++++++++++++++++++++++-------------- R/plot.predict_mod.R | 1 R/plot.prod_mod.R | 1 R/plot.prod_mod_ts.R | 1 R/plot.recruitment.R | 1 R/plot.select.R | 1 R/plot.select_Millar.R | 1 R/yeardec2date.R | 8 - README.md | 26 ++- build/vignette.rds |binary data/datalist |only inst/CITATION | 14 + inst/doc/TropFishR.bib |only inst/doc/lfqData.R |only inst/doc/lfqData.Rmd |only inst/doc/lfqData.html |only inst/doc/news.html |only inst/doc/news.md |only inst/doc/tutorial.R | 32 +--- inst/doc/tutorial.Rmd | 42 ++--- inst/doc/tutorial.html | 188 ++++++++++++------------- man/ELEFAN.Rd | 94 ++++++++++-- man/ELEFAN_GA.Rd | 20 ++ man/ELEFAN_SA.Rd | 15 +- man/catchCurve.Rd | 8 - man/lfqFitCurves.Rd | 6 man/lfqModify.Rd | 5 man/plot.catchCurve.Rd | 7 man/plot.lfq.Rd | 21 +- vignettes/LFQdat1.png |only vignettes/LFQdat2.png |only vignettes/LFQdat3.png |only vignettes/TropFishR.bib | 59 +++++--- vignettes/lfqData.Rmd |only vignettes/tutorial.Rmd | 42 ++--- 50 files changed, 1535 insertions(+), 787 deletions(-)
Title: Extractive Summarization of Text with the LexRank Algorithm
Description: An R implementation of the LexRank algorithm described by G. Erkan and D. R. Radev (2004) <DOI:10.1613/jair.1523>.
Author: Adam Spannbauer [aut, cre], Bryan White [ctb]
Maintainer: Adam Spannbauer <spannbaueradam@gmail.com>
Diff between lexRankr versions 0.4.1 dated 2017-05-10 and 0.5.0 dated 2017-12-13
DESCRIPTION | 11 LICENSE | 4 MD5 | 87 +-- NAMESPACE | 32 - NEWS.md | 55 +- R/RcppExports.R | 14 R/bind_lexrank.R | 243 ++++----- R/data.R |only R/lexRank.R | 106 +-- R/lexRankFromSimil.R | 151 ++--- R/sentenceParse.R | 82 +-- R/sentenceSimil.R | 181 ++---- R/sentenceTokenParse.R | 68 +- R/sentence_parser.R | 21 R/tokenize.R | 141 ++--- R/unnest_sentences.R | 143 +++-- README.md | 436 ++++++++-------- build/vignette.rds |binary data |only inst/doc/Analyzing_Twitter_with_LexRankr.html | 536 ++++++++++---------- inst/doc/Analyzing_Twitter_with_LexRankr.html.asis | 8 man/bind_lexrank_.Rd | 148 ++--- man/lexRank.Rd | 114 ++-- man/lexRankFromSimil.Rd | 80 +- man/sentenceParse.Rd | 48 - man/sentenceSimil.Rd | 62 +- man/sentenceTokenParse.Rd | 70 +- man/sentence_parser.Rd | 34 - man/smart_stopwords.Rd |only man/tokenize.Rd | 62 +- man/unnest_sentences_.Rd | 92 +-- src/RcppExports.cpp | 2 src/register_routines.c | 10 tests/testthat.R | 8 tests/testthat/test-bind_lexrank.R | 245 ++++----- tests/testthat/test-bind_lexrank_.R | 245 ++++----- tests/testthat/test-idfCosine.R | 90 +-- tests/testthat/test-lexRank.R | 80 +- tests/testthat/test-lexRankFromSimil.R | 156 ++--- tests/testthat/test-sentenceParse.R | 92 +-- tests/testthat/test-sentenceSimil.R | 180 ++++-- tests/testthat/test-sentenceTokenParse.R | 79 +- tests/testthat/test-tokenize.R | 288 +++++----- tests/testthat/test-unnest_sentences.R | 128 ++-- tests/testthat/test-unnest_sentences_.R | 130 ++-- vignettes/Analyzing_Twitter_with_LexRankr.html.asis | 8 46 files changed, 2443 insertions(+), 2327 deletions(-)
Title: Binary Logic
Description: Provides the binary S3 class. The instance of binary is used to convert a decimal number (Base10) to a binary number (Base2). The Class provides some features e.G. shift(), rotate(), summary(). Based on logical vectors.
Author: Daniel Dörrhöfer [aut, cre],
Aaron Rudkin [ctb]
Maintainer: Daniel Dörrhöfer <ddo@openmailbox.org>
Diff between binaryLogic versions 0.3.5 dated 2016-06-24 and 0.3.9 dated 2017-12-13
binaryLogic-0.3.5/binaryLogic/LICENSE |only binaryLogic-0.3.9/binaryLogic/DESCRIPTION | 17 ++++++---- binaryLogic-0.3.9/binaryLogic/MD5 | 7 +--- binaryLogic-0.3.9/binaryLogic/R/BinaryS3.R | 26 ++++++++++----- binaryLogic-0.3.9/binaryLogic/README.md | 48 ++++++++++++++--------------- 5 files changed, 55 insertions(+), 43 deletions(-)
Title: Unit Testing for R
Description: Software testing is important, but, in part because it is
frustrating and boring, many of us avoid it. 'testthat' is a testing framework
for R that is easy learn and use, and integrates with your existing 'workflow'.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd],
R Core team [ctb] (Implementation of utils::recover())
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between testthat versions 1.0.2 dated 2016-04-23 and 2.0.0 dated 2017-12-13
testthat-1.0.2/testthat/R/expect-equal-to-reference.R |only testthat-1.0.2/testthat/R/test-package.R |only testthat-1.0.2/testthat/man/expect_equal_to_reference.Rd |only testthat-1.0.2/testthat/man/test_package.Rd |only testthat-1.0.2/testthat/man/testthat.Rd |only testthat-1.0.2/testthat/src/label.c |only testthat-1.0.2/testthat/tests/testthat/test-expect-equal-to-reference.R |only testthat-1.0.2/testthat/tests/testthat/test-not.R |only testthat-1.0.2/testthat/tests/testthat/test-reporter-tap.R |only testthat-2.0.0/testthat/DESCRIPTION | 61 testthat-2.0.0/testthat/LICENSE | 2 testthat-2.0.0/testthat/MD5 | 375 testthat-2.0.0/testthat/NAMESPACE | 37 testthat-2.0.0/testthat/NEWS.md | 267 testthat-2.0.0/testthat/R/auto-test.R | 56 testthat-2.0.0/testthat/R/capture-condition.R |only testthat-2.0.0/testthat/R/capture-output.R |only testthat-2.0.0/testthat/R/colour-text.R | 24 testthat-2.0.0/testthat/R/compare-character.R | 11 testthat-2.0.0/testthat/R/compare-numeric.R | 13 testthat-2.0.0/testthat/R/compare.R | 26 testthat-2.0.0/testthat/R/describe.R | 56 testthat-2.0.0/testthat/R/evaluate-promise.R | 83 testthat-2.0.0/testthat/R/expect-comparison.R | 37 testthat-2.0.0/testthat/R/expect-equality.R | 115 testthat-2.0.0/testthat/R/expect-inheritance.R | 73 testthat-2.0.0/testthat/R/expect-known.R |only testthat-2.0.0/testthat/R/expect-length.R | 16 testthat-2.0.0/testthat/R/expect-logical.R | 18 testthat-2.0.0/testthat/R/expect-named.R | 39 testthat-2.0.0/testthat/R/expect-output.R | 284 testthat-2.0.0/testthat/R/expect-self-test.R | 58 testthat-2.0.0/testthat/R/expect-that.R | 10 testthat-2.0.0/testthat/R/expectation.R | 138 testthat-2.0.0/testthat/R/expectations-matches.R | 36 testthat-2.0.0/testthat/R/make-expectation.R | 15 testthat-2.0.0/testthat/R/mock.R | 64 testthat-2.0.0/testthat/R/old-school.R | 21 testthat-2.0.0/testthat/R/recover.R |only testthat-2.0.0/testthat/R/reporter-check.R | 33 testthat-2.0.0/testthat/R/reporter-debug.R |only 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testthat-2.0.0/testthat/vignettes |only 221 files changed, 6901 insertions(+), 3266 deletions(-)
Title: Data-Driven Identification of SVAR Models
Description: Implements data-driven identification methods for structural vector autoregressive (SVAR) models.
Based on an existing VAR model object (provided by e.g. VAR() from the 'vars' package), the structural
impact matrix is obtained via data-driven identification techniques (i.e. changes in volatility (Rigobon, R. (2003) <doi:10.1162/003465303772815727>),
least dependent innovations (Herwartz, H., Ploedt, M., (2016) <doi:10.1016/j.jimonfin.2015.11.001>) or non-Gaussian maximum likelihood (Lanne, M., Meitz, M., Saikkonen, P. (2017) <doi:10.1016/j.jeconom.2016.06.002>).
Author: Alexander Lange [aut, cre],
Bernhard Dalheimer [aut],
Helmut Herwartz [aut],
Simone Maxand [aut],
Hannes Riebl [ctb]
Maintainer: Alexander Lange <alexander.lange@uni-goettingen.de>
Diff between svars versions 1.0.0 dated 2017-11-09 and 1.0.1 dated 2017-12-13
DESCRIPTION | 8 +-- MD5 | 26 ++++++------ R/bootstrap_mb.R | 22 +++++++--- R/bootstrap_wild.R | 31 ++++++++++----- R/chow.test.R | 2 R/id.cv.R | 29 ++++++++++---- R/id.cvm.R | 95 +++++++++++++++++++++++++++-------------------- R/id.ngml.R | 88 ++++++++++++++++++++++++++----------------- R/ld.dc.R | 107 ++++++++++++++++++++++++----------------------------- man/chow.test.Rd | 2 man/id.cv.Rd | 2 man/id.cvm.Rd | 10 ++-- man/mb.boot.Rd | 4 - man/wild.boot.Rd | 2 14 files changed, 246 insertions(+), 182 deletions(-)
Title: Containerize R Markdown Documents
Description: Persistent reproducible reporting by containerization of R Markdown documents.
Author: Nan Xiao [aut, cre] (0000-0002-0250-5673),
Miao-Zhu Li [ctb],
Teng-Fei Yin [ctb]
Maintainer: Nan Xiao <me@nanx.me>
Diff between liftr versions 0.7 dated 2017-09-29 and 0.8 dated 2017-12-13
liftr-0.7/liftr/R/purge.R |only liftr-0.7/liftr/man/addin_purge_image.Rd |only liftr-0.7/liftr/man/purge_container.Rd |only liftr-0.7/liftr/man/purge_image.Rd |only liftr-0.8/liftr/DESCRIPTION | 19 ++++---- liftr-0.8/liftr/MD5 | 60 ++++++++++++++++---------- liftr-0.8/liftr/NAMESPACE | 9 +++ liftr-0.8/liftr/NEWS.md | 17 +++++++ liftr-0.8/liftr/R/addins.R | 21 +++++++-- liftr-0.8/liftr/R/install.R |only liftr-0.8/liftr/R/lift.R | 6 -- liftr-0.8/liftr/R/liftr-package.R | 4 - liftr-0.8/liftr/R/prune.R |only liftr-0.8/liftr/R/render_docker.R | 37 +++++++++------- liftr-0.8/liftr/R/utils.R | 6 ++ liftr-0.8/liftr/README.md | 6 +- liftr-0.8/liftr/build/vignette.rds |binary liftr-0.8/liftr/inst/doc/liftr-addins.Rmd |only liftr-0.8/liftr/inst/doc/liftr-addins.html |only liftr-0.8/liftr/inst/doc/liftr-intro.R | 10 ++-- liftr-0.8/liftr/inst/doc/liftr-intro.Rmd | 45 ++++++++++--------- liftr-0.8/liftr/inst/doc/liftr-intro.html | 37 +++++++--------- liftr-0.8/liftr/inst/doc/liftr-tidyverse.R |only liftr-0.8/liftr/inst/doc/liftr-tidyverse.Rmd |only liftr-0.8/liftr/inst/doc/liftr-tidyverse.html |only liftr-0.8/liftr/inst/rstudio/addins.dcf | 13 +++-- liftr-0.8/liftr/man/addin_prune_dangling.Rd |only liftr-0.8/liftr/man/addin_prune_image.Rd |only liftr-0.8/liftr/man/check_docker_install.Rd |only liftr-0.8/liftr/man/check_docker_running.Rd |only liftr-0.8/liftr/man/install_docker.Rd |only liftr-0.8/liftr/man/lift.Rd | 2 liftr-0.8/liftr/man/liftr-package.Rd | 4 - liftr-0.8/liftr/man/prune_all_auto.Rd |only liftr-0.8/liftr/man/prune_container.Rd |only liftr-0.8/liftr/man/prune_container_auto.Rd |only liftr-0.8/liftr/man/prune_image.Rd |only liftr-0.8/liftr/man/prune_image_auto.Rd |only liftr-0.8/liftr/man/render_docker.Rd | 30 +++++++------ liftr-0.8/liftr/vignettes/liftr-addins.Rmd |only liftr-0.8/liftr/vignettes/liftr-intro.Rmd | 45 ++++++++++--------- liftr-0.8/liftr/vignettes/liftr-tidyverse.Rmd |only liftr-0.8/liftr/vignettes/liftr-tidyverse.bib |only 43 files changed, 226 insertions(+), 145 deletions(-)
Title: Managing, Querying and Analyzing Tokenized Text
Description: Provides text analysis in R, focusing on the use of a tokenized text format. In this format, the positions of tokens are maintained, and each token can be annotated (e.g., part-of-speech tags, dependency relations).
Prominent features include advanced Lucene-like querying for specific tokens or contexts (e.g., documents, sentences),
similarity statistics for words and documents, exporting to DTM for compatibility with many text analysis packages,
and the possibility to reconstruct original text from tokens to facilitate interpretation.
Author: Kasper Welbers and Wouter van Atteveldt
Maintainer: Kasper Welbers <kasperwelbers@gmail.com>
Diff between corpustools versions 0.3 dated 2017-10-03 and 0.3.1 dated 2017-12-13
DESCRIPTION | 8 - MD5 | 79 ++++++------ R/1_tcorpus.r | 190 +++++++++++++++++-------------- R/collocations.r | 2 R/create_tcorpus.r | 73 +++++------ R/document_term_matrix.r | 2 R/documentation_methods.r | 16 +- R/documentation_overview.r | 3 R/feature_associations.r | 9 - R/feature_information.r | 4 R/kwic.r | 50 ++++---- R/merge_tcorpus.r | 12 - R/positions.r | 23 --- R/preprocessing.r | 4 R/search.r | 103 +++++++++++----- R/search_contexts.r | 43 ++++--- R/search_features.r | 89 ++++++++++---- R/search_results.r | 46 +++---- R/tokenize.r | 6 R/util.r | 26 ++++ README.md | 13 -- man/tCorpus-cash-code_features.Rd |only man/tCorpus-cash-feature_associations.Rd | 6 man/tCorpus-cash-feature_subset.Rd | 2 man/tCorpus-cash-get.Rd | 8 - man/tCorpus-cash-kwic.Rd | 6 man/tCorpus-cash-search_features.Rd | 10 - man/tCorpus-cash-search_recode.Rd | 6 man/tCorpus-cash-set.Rd | 4 man/tCorpus-cash-subset.Rd | 4 man/tCorpus-cash-subset_query.Rd | 4 man/tCorpus-cash-top_features.Rd | 2 man/tCorpus_querying.Rd | 3 man/tokens_to_tcorpus.Rd | 20 +-- src/hit_ids.cpp | 3 src/parse_query.cpp | 3 tests/testthat/test_advanced_search.r | 2 tests/testthat/test_preprocessing.r | 2 tests/testthat/test_search_contexts.r | 5 tests/testthat/test_search_features.r | 14 +- tests/testthat/test_tcorpus.r | 4 41 files changed, 533 insertions(+), 376 deletions(-)
Title: Sensory Data Analysis
Description: Statistical Methods to Analyse Sensory Data. SensoMineR: A package for sensory data analysis. S. Le and F. Husson (2008) <DOI:10.1111/j.1745-459X.2007.00137.x>.
Author: Francois Husson, Sebastien Le, Marine Cadoret
Maintainer: Francois Husson <husson@agrocampus-ouest.fr>
Diff between SensoMineR versions 1.20 dated 2014-04-13 and 1.23 dated 2017-12-13
SensoMineR-1.20/SensoMineR/R/coltable2.R |only SensoMineR-1.23/SensoMineR/DESCRIPTION | 16 +-- SensoMineR-1.23/SensoMineR/MD5 | 66 ++++++++------ SensoMineR-1.23/SensoMineR/NAMESPACE | 27 +++++ SensoMineR-1.23/SensoMineR/R/CA_JAR.R |only SensoMineR-1.23/SensoMineR/R/IdMapConsumer.r | 108 +++++++++++------------ SensoMineR-1.23/SensoMineR/R/JAR.R |only SensoMineR-1.23/SensoMineR/R/analyse_holos.R |only SensoMineR-1.23/SensoMineR/R/averagetable.R | 2 SensoMineR-1.23/SensoMineR/R/carto.R | 2 SensoMineR-1.23/SensoMineR/R/cartoconsumer.R | 11 +- SensoMineR-1.23/SensoMineR/R/coltable.R | 85 ++++++++++++------ SensoMineR-1.23/SensoMineR/R/decat.R | 2 SensoMineR-1.23/SensoMineR/R/fahst.r | 8 - SensoMineR-1.23/SensoMineR/R/fasnt.r | 14 +- SensoMineR-1.23/SensoMineR/R/format_holos.R |only SensoMineR-1.23/SensoMineR/R/graphinter.R | 20 ++-- SensoMineR-1.23/SensoMineR/R/interact.R | 2 SensoMineR-1.23/SensoMineR/R/nappesortplot.R | 6 - SensoMineR-1.23/SensoMineR/R/optimaldesign.R | 72 +++++---------- SensoMineR-1.23/SensoMineR/R/panellipse.r | 14 +- SensoMineR-1.23/SensoMineR/R/panelmatch.R | 8 - SensoMineR-1.23/SensoMineR/R/plot.JAR.R |only SensoMineR-1.23/SensoMineR/R/pmfa.R | 10 +- SensoMineR-1.23/SensoMineR/R/print.fast.R | 2 SensoMineR-1.23/SensoMineR/data/JAR.rda |only SensoMineR-1.23/SensoMineR/data/chocolates.rda |binary SensoMineR-1.23/SensoMineR/data/hedochoc.rda |binary SensoMineR-1.23/SensoMineR/data/sensopanels.rda |binary SensoMineR-1.23/SensoMineR/data/videos.rda |only SensoMineR-1.23/SensoMineR/man/CA_JAR.Rd |only SensoMineR-1.23/SensoMineR/man/JAR.Rd |only SensoMineR-1.23/SensoMineR/man/analyse_holos.Rd |only SensoMineR-1.23/SensoMineR/man/cocktail.Rd | 4 SensoMineR-1.23/SensoMineR/man/format_holos.Rd |only SensoMineR-1.23/SensoMineR/man/hedochoc.Rd | 2 SensoMineR-1.23/SensoMineR/man/optimaldesign.Rd | 2 SensoMineR-1.23/SensoMineR/man/plot.JAR.Rd |only SensoMineR-1.23/SensoMineR/man/senso.cocktail.Rd | 2 SensoMineR-1.23/SensoMineR/man/sensopanels.Rd | 2 SensoMineR-1.23/SensoMineR/man/videos.Rd |only 41 files changed, 268 insertions(+), 219 deletions(-)
Title: R Interface to the Vowpal Wabbit
Description: The 'Vowpal Wabbit' project is a fast out-of-core learning
system sponsored by Microsoft Research (having started at Yahoo! Research)
and written by John Langford along with a number of contributors. This R
package does not include the distributed computing implementation of the
cluster/ directory of the upstream sources. Use of the software as a network
service is also not directly supported as the aim is a simpler direct call
from R for validation and comparison. Note that this package contains an
embedded older version of 'Vowpal Wabbit'. The package 'rvw' at the GitHub
repo <https://github.com/eddelbuettel/rvw> can provide an alternative using
an external 'Vowpal Wabbit' library installation.
Author: Dirk Eddelbuettel <edd@debian.org>
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RVowpalWabbit versions 0.0.9 dated 2017-03-06 and 0.0.10 dated 2017-12-13
ChangeLog | 13 +++++++++++++ DESCRIPTION | 13 ++++++++----- MD5 | 20 ++++++++++---------- demo/vw.R | 42 +++++++++++++++++++----------------------- man/vw.Rd | 7 ++----- tests/test1.r | 8 ++------ tests/test2.r | 8 ++------ tests/test5.r | 7 ++----- tests/test6.r | 8 ++------ tests/test7.r | 8 ++------ tests/test8.r | 8 ++------ 11 files changed, 64 insertions(+), 78 deletions(-)
Title: Update and Manipulate Rd Documentation Objects
Description: Functions for manipulation of Rd objects, including function reprompt()
for updating existing Rd documentation for functions, methods and classes,
function rebib() for import of references from 'bibtex' files, a macro for
importing 'bibtex' references which can be used in Rd files and 'roxygen2'
comments and other convenience functions for references.
Author: Georgi N. Boshnakov
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Rdpack versions 0.4-22 dated 2017-10-02 and 0.5-1 dated 2017-12-13
Rdpack-0.4-22/Rdpack/vignettes/auto |only Rdpack-0.5-1/Rdpack/DESCRIPTION | 24 - Rdpack-0.5-1/Rdpack/MD5 | 47 +- Rdpack-0.5-1/Rdpack/NAMESPACE | 3 Rdpack-0.5-1/Rdpack/NEWS | 22 Rdpack-0.5-1/Rdpack/R/bib.R | 150 ++++++ Rdpack-0.5-1/Rdpack/README.md | 101 ++++ Rdpack-0.5-1/Rdpack/build/partial.rdb |binary Rdpack-0.5-1/Rdpack/inst/doc/Inserting_bibtex_references.R | 2 Rdpack-0.5-1/Rdpack/inst/doc/Inserting_bibtex_references.Rnw | 228 ++++++---- Rdpack-0.5-1/Rdpack/inst/doc/Inserting_bibtex_references.pdf |binary Rdpack-0.5-1/Rdpack/man/Rdapply.Rd | 2 Rdpack-0.5-1/Rdpack/man/Rdo_append_argument.Rd | 2 Rdpack-0.5-1/Rdpack/man/Rdo_collect_metadata.Rd | 2 Rdpack-0.5-1/Rdpack/man/Rdo_locate_leaves.Rd | 2 Rdpack-0.5-1/Rdpack/man/Rdo_modify.Rd | 2 Rdpack-0.5-1/Rdpack/man/Rdo_reparse.Rd | 2 Rdpack-0.5-1/Rdpack/man/Rdo_set_section.Rd | 4 Rdpack-0.5-1/Rdpack/man/Rdpack-package.Rd | 19 Rdpack-0.5-1/Rdpack/man/deparse_usage.Rd | 3 Rdpack-0.5-1/Rdpack/man/list_Rd.Rd | 2 Rdpack-0.5-1/Rdpack/man/makeVignetteReference.Rd |only Rdpack-0.5-1/Rdpack/man/parse_Rdpiece.Rd | 2 Rdpack-0.5-1/Rdpack/man/reprompt.Rd | 8 Rdpack-0.5-1/Rdpack/man/viewRd.Rd |only Rdpack-0.5-1/Rdpack/vignettes/Inserting_bibtex_references.Rnw | 228 ++++++---- 26 files changed, 634 insertions(+), 221 deletions(-)
Title: Knowledge Space Theory
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kst' package provides
basic functionalities to generate, handle, and manipulate knowledge
structures and knowledge spaces.
Author: Christina Stahl [aut],
David Meyer [aut], Cord Hockemeyer [ctb, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kst versions 0.2-1 dated 2014-01-11 and 0.2-2 dated 2017-12-13
kst-0.2-1/kst/inst/doc/README |only kst-0.2-2/kst/Changelog |only kst-0.2-2/kst/DESCRIPTION | 32 ++++++++++++++++++-------------- kst-0.2-2/kst/MD5 | 27 ++++++++++++++------------- kst-0.2-2/kst/NAMESPACE | 5 ++--- kst-0.2-2/kst/R/kstructure.R | 2 ++ kst-0.2-2/kst/R/plot.kstructure.R | 4 ++-- kst-0.2-2/kst/build/vignette.rds |binary kst-0.2-2/kst/inst/doc/kst.R | 6 +++--- kst-0.2-2/kst/inst/doc/kst.Rnw | 7 ++++--- kst-0.2-2/kst/inst/doc/kst.pdf |binary kst-0.2-2/kst/man/as.relation.Rd | 4 ++-- kst-0.2-2/kst/man/kstructure.Rd | 12 +++++++----- kst-0.2-2/kst/man/reduction.Rd | 4 ++-- kst-0.2-2/kst/vignettes/a4wide.sty |only kst-0.2-2/kst/vignettes/kst.Rnw | 7 ++++--- 16 files changed, 60 insertions(+), 50 deletions(-)
Title: Tools for Modeling Rate-Dependent Hysteretic Processes and
Ellipses
Description: Fit, summarize and plot sinusoidal hysteretic processes using:
two-step simple harmonic least squares, ellipse-specific non-linear least
squares, the direct method, geometric least squares or linear least squares.
Author: Spencer Maynes, Fan Yang, and Anne Parkhurst
Maintainer: Anne Parkhurst <aparkhurst@unl.edu>
Diff between hysteresis versions 2.5 dated 2015-01-23 and 2.6 dated 2017-12-13
hysteresis-2.5/hysteresis/vignettes/figure |only hysteresis-2.6/hysteresis/DESCRIPTION | 8 hysteresis-2.6/hysteresis/MD5 | 68 -- hysteresis-2.6/hysteresis/NAMESPACE | 3 hysteresis-2.6/hysteresis/NEWS | 6 hysteresis-2.6/hysteresis/R/delta.error.R | 10 hysteresis-2.6/hysteresis/R/mloop.r | 4 hysteresis-2.6/hysteresis/R/mloop2r.R | 3 hysteresis-2.6/hysteresis/R/summary.ellipsefitlist.R | 10 hysteresis-2.6/hysteresis/build/vignette.rds |binary hysteresis-2.6/hysteresis/inst/doc/index.R | 24 hysteresis-2.6/hysteresis/inst/doc/index.html | 532 ++++++++---------- hysteresis-2.6/hysteresis/man/mloop.Rd | 4 hysteresis-2.6/hysteresis/man/residuals.fittedloop.Rd | 3 14 files changed, 305 insertions(+), 370 deletions(-)
Title: Lightning Fast Serialization of Data Frames for R
Description: Multithreaded serialization of compressed data frames using the 'fst' format. Allows for random (column and row) access of stored data.
Author: Mark Klik [aut, cre, cph]
Maintainer: Mark Klik <markklik@gmail.com>
Diff between fst versions 0.7.2 dated 2017-01-12 and 0.8.0 dated 2017-12-13
fst-0.7.2/fst/man/fst.metadata.Rd |only fst-0.7.2/fst/man/write.fst.Rd |only fst-0.7.2/fst/src/FastStore.cpp |only fst-0.7.2/fst/src/FastStore.h |only fst-0.7.2/fst/src/LZ4 |only fst-0.7.2/fst/src/ZSTD |only fst-0.7.2/fst/src/blockStore.cpp |only fst-0.7.2/fst/src/blockStore.h |only fst-0.7.2/fst/src/boolStore.cpp |only fst-0.7.2/fst/src/boolStore.h |only fst-0.7.2/fst/src/charStore.cpp |only fst-0.7.2/fst/src/charStore.h |only fst-0.7.2/fst/src/compression.cpp |only fst-0.7.2/fst/src/compression.h |only fst-0.7.2/fst/src/compressor.cpp |only fst-0.7.2/fst/src/compressor.h |only fst-0.7.2/fst/src/doubleStore.cpp |only fst-0.7.2/fst/src/doubleStore.h |only fst-0.7.2/fst/src/factStore.cpp |only fst-0.7.2/fst/src/factStore.h |only fst-0.7.2/fst/src/intStore.cpp |only fst-0.7.2/fst/src/intStore.h |only fst-0.7.2/fst/src/lowerbound.cpp |only fst-0.7.2/fst/src/lowerbound.h |only fst-0.7.2/fst/tests/testthat/test.access.R |only fst-0.7.2/fst/tests/testthat/test.fst.R |only fst-0.7.2/fst/tests/testthat/test.fst.factor.R |only fst-0.7.2/fst/tests/testthat/test.roundtrip.R |only fst-0.8.0/fst/DESCRIPTION | 30 - fst-0.8.0/fst/LICENSE | 663 ++++++++++++++++++++++++- fst-0.8.0/fst/MD5 | 211 +++++-- fst-0.8.0/fst/NAMESPACE | 15 fst-0.8.0/fst/R/RcppExports.R | 44 - fst-0.8.0/fst/R/compress.R |only fst-0.8.0/fst/R/fst.R | 195 +++++-- fst-0.8.0/fst/R/hash.R |only fst-0.8.0/fst/R/onAttach.R |only fst-0.8.0/fst/R/openmp.R |only fst-0.8.0/fst/R/package.R | 29 - fst-0.8.0/fst/man/compress_fst.Rd |only fst-0.8.0/fst/man/decompress_fst.Rd |only fst-0.8.0/fst/man/hash_fst.Rd |only fst-0.8.0/fst/man/metadata_fst.Rd |only fst-0.8.0/fst/man/threads_fst.Rd |only fst-0.8.0/fst/man/write_fst.Rd |only fst-0.8.0/fst/src/Makevars | 32 - fst-0.8.0/fst/src/RcppExports.cpp | 129 +--- fst-0.8.0/fst/src/flex_store.cpp |only fst-0.8.0/fst/src/flex_store.h |only fst-0.8.0/fst/src/flex_store_v1.cpp |only fst-0.8.0/fst/src/flex_store_v1.h |only fst-0.8.0/fst/src/fst_blockrunner_char.cpp |only fst-0.8.0/fst/src/fst_blockrunner_char.h |only fst-0.8.0/fst/src/fst_column.h |only fst-0.8.0/fst/src/fst_column_factory.h |only fst-0.8.0/fst/src/fst_compress.cpp |only fst-0.8.0/fst/src/fst_compress.h |only fst-0.8.0/fst/src/fst_error.cpp |only fst-0.8.0/fst/src/fst_error.h |only fst-0.8.0/fst/src/fst_table.cpp |only fst-0.8.0/fst/src/fst_table.h |only fst-0.8.0/fst/src/fst_type_factory.h |only fst-0.8.0/fst/src/fstcore |only fst-0.8.0/fst/src/fstcore_v1 |only fst-0.8.0/fst/src/init.c |only fst-0.8.0/fst/src/openmp.cpp |only fst-0.8.0/fst/src/openmp.h |only fst-0.8.0/fst/tests/testthat.R | 5 fst-0.8.0/fst/tests/testthat/FactorStore |only fst-0.8.0/fst/tests/testthat/datasets |only fst-0.8.0/fst/tests/testthat/helper_fstwrite.R |only fst-0.8.0/fst/tests/testthat/keyedTable.rds |only fst-0.8.0/fst/tests/testthat/some_fst_file.fst |only fst-0.8.0/fst/tests/testthat/test_access.R |only fst-0.8.0/fst/tests/testthat/test_bigvector.R |only fst-0.8.0/fst/tests/testthat/test_compress.R |only fst-0.8.0/fst/tests/testthat/test_date.R |only fst-0.8.0/fst/tests/testthat/test_encoding.R |only fst-0.8.0/fst/tests/testthat/test_factor.R |only fst-0.8.0/fst/tests/testthat/test_fst.R |only fst-0.8.0/fst/tests/testthat/test_integer64.R |only fst-0.8.0/fst/tests/testthat/test_interface.R |only fst-0.8.0/fst/tests/testthat/test_keys.R |only fst-0.8.0/fst/tests/testthat/test_legacy.R |only fst-0.8.0/fst/tests/testthat/test_lintr.R |only fst-0.8.0/fst/tests/testthat/test_meta.R |only fst-0.8.0/fst/tests/testthat/test_nanotime.R |only fst-0.8.0/fst/tests/testthat/test_omp.R |only fst-0.8.0/fst/tests/testthat/test_rbind.R |only fst-0.8.0/fst/tests/testthat/test_roundtrip.R |only fst-0.8.0/fst/tests/testthat/test_time.R |only 91 files changed, 1109 insertions(+), 244 deletions(-)
Title: Foreach Parallel Adaptor for the 'snow' Package
Description: Provides a parallel backend for the %dopar% function using
the snow package of Tierney, Rossini, Li, and Sevcikova.
Author: Rich Calaway [cre],
Microsoft Corporation [aut, cph],
Stephen Weston [aut]
Maintainer: Rich Calaway <richcala@microsoft.com>
Diff between doSNOW versions 1.0.15 dated 2017-09-29 and 1.0.16 dated 2017-12-13
DESCRIPTION | 15 +++++++++------ MD5 | 8 ++++---- NEWS | 3 +++ R/doSNOW.R | 2 +- tests/doRUnit.R | 2 +- 5 files changed, 18 insertions(+), 12 deletions(-)
Title: Generalised Joint Regression Modelling
Description: Routines for fitting various joint regression models, with several types of covariate effects, in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between GJRM versions 0.1-3 dated 2017-11-17 and 0.1-4 dated 2017-12-13
ChangeLog | 10 ++++-- DESCRIPTION | 6 ++-- MD5 | 10 +++--- R/pream.wm.r | 4 ++ R/pred.mvt.r | 84 ++++++++++++++++++++++++++++++++++++++++++++++++-------- man/pred.mvt.Rd | 5 ++- 6 files changed, 95 insertions(+), 24 deletions(-)
Title: A Pipeline for Meta-Genome Wide Association
Description: Correlates variation within the meta-genome to target species
phenotype variations in meta-genome with association studies. Follows
the pipeline described in Chaston, J.M. et al. (2014) <doi:10.1128/mBio.01631-14>.
Author: Corinne Sexton [aut],
John Chaston [aut, cre],
Hayden Smith [ctb]
Maintainer: John Chaston <john_chaston@byu.edu>
Diff between MAGNAMWAR versions 2.0.0 dated 2017-08-28 and 2.0.1 dated 2017-12-13
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 6 +++++- R/AnalyzeOrthoMCL.R | 1 - R/graphics.R | 16 ++++++++++++---- inst/doc/using_mag.Rmd | 18 +++++++++--------- inst/doc/using_mag.html | 30 +++++++++++++++--------------- vignettes/using_mag.Rmd | 18 +++++++++--------- 8 files changed, 61 insertions(+), 50 deletions(-)