Title: In-Memory Caching for Repeated Computations
Description: A simple in-memory, LRU cache that can be wrapped
around any function to memoize it. The cache can be keyed on a hash of the
input data (using 'digest') or on pointer equivalence.
Author: Peter Meilstrup <peter.meilstrup@gmail.com>
Maintainer: Peter Meilstrup <peter.meilstrup@gmail.com>
Diff between memo versions 1.0 dated 2016-08-25 and 1.0.1 dated 2018-01-03
DESCRIPTION | 10 - MD5 | 20 +- NEWS |only build/vignette.rds |binary inst/doc/README.html | 343 +++++++++++++++++++++++++++++++++++++++------------ man/cache_stats.Rd | 1 man/lru_cache.Rd | 1 man/memo.Rd | 2 man/strategies.Rd | 5 src/getPointer.c | 26 ++- src/init.c |only src/vadr.h | 2 12 files changed, 304 insertions(+), 106 deletions(-)
Title: Testing for Change in C-Statistic
Description: Calculate the confidence interval and p value for change in C-statistic. The adjusted C-statistic is calculated by using formula as "Somers' Dxy rank correlation"/2+0.5. The confidence interval was calculated by using the bootstrap method. The p value was calculated by using the Z testing method. Please refer to the article of Peter Ganz et al. (2016) <doi:10.1001/jama.2016.5951>.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between CsChange versions 0.1.1 dated 2017-12-18 and 0.1.2 dated 2018-01-03
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NAMESPACE | 2 +- R/CsChange.R | 32 +++++++++++++++++++++++++------- man/CsChange.Rd | 8 ++++---- 5 files changed, 37 insertions(+), 19 deletions(-)
Title: Tukey Region and Median
Description: Tukey regions are polytopes in the Euclidean space, viz. upper-level sets of the Tukey depth function on given data. The bordering hyperplanes of a Tukey region are computed as well as its vertices, facets, centroid, and volume. In addition, the Tukey median set, which is the non-empty Tukey region having highest depth level, and its barycenter (= Tukey median) are calculated. Tukey regions are visualized in dimension two and three. For details see Liu, Mosler, and Mozharovskyi (2017) <arXiv:1412.5122>.
Author: Pavlo Mozharovskyi [aut, cre],
C.B. Barber [aut, cph],
The Geometry Center University of Minnesota [cph]
Maintainer: Pavlo Mozharovskyi <pavlo.mozharovskyi@ensai.fr>
Diff between TukeyRegion versions 0.1.0 dated 2017-12-07 and 0.1.1 dated 2018-01-03
TukeyRegion-0.1.0/TukeyRegion/src/libglpk |only TukeyRegion-0.1.1/TukeyRegion/DESCRIPTION | 52 --- TukeyRegion-0.1.1/TukeyRegion/LICENSE | 239 --------------- TukeyRegion-0.1.1/TukeyRegion/MD5 | 238 -------------- TukeyRegion-0.1.1/TukeyRegion/NAMESPACE | 1 TukeyRegion-0.1.1/TukeyRegion/man/TukeyRegion-package.Rd | 6 TukeyRegion-0.1.1/TukeyRegion/src/Makevars | 4 TukeyRegion-0.1.1/TukeyRegion/src/Makevars.win | 4 TukeyRegion-0.1.1/TukeyRegion/src/TukeyRegion.h | 4 TukeyRegion-0.1.1/TukeyRegion/src/common.cpp | 150 ++++++--- 10 files changed, 137 insertions(+), 561 deletions(-)
Title: Well-Formatted Regression and Summary Statistics Tables
Description: Produces LaTeX code, HTML/CSS code and ASCII text for well-formatted tables that hold
regression analysis results from several models side-by-side, as well as summary
statistics.
Author: Marek Hlavac <mhlavac@alumni.princeton.edu>
Maintainer: Marek Hlavac <mhlavac@alumni.princeton.edu>
Diff between stargazer versions 5.2 dated 2015-07-14 and 5.2.1 dated 2018-01-03
DESCRIPTION | 13 +++++++------ MD5 | 22 +++++++++++----------- R/stargazer-internal.R | 4 ++-- build/vignette.rds |binary inst/CITATION | 12 ++++++------ inst/ChangeLog | 5 ++++- inst/doc/stargazer.Rtex | 8 ++++---- inst/doc/stargazer.pdf |binary man/stargazer.Rd | 7 ++++--- man/stargazer_models.Rd | 2 +- man/stargazer_news.Rd | 6 +++++- vignettes/stargazer.Rtex | 8 ++++---- 12 files changed, 48 insertions(+), 39 deletions(-)
Title: Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico <scalonico@bus.miami.edu>, Matias D. Cattaneo <cattaneo@umich.edu>, Max H. Farrell <max.farrell@chicagobooth.edu>, Rocio Titiunik <titiunik@umich.edu>
Maintainer: Sebastian Calonico <scalonico@bus.miami.edu>
Diff between rdrobust versions 0.98 dated 2017-06-09 and 0.99 dated 2018-01-03
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/functions.R | 2 +- R/rdbwselect.R | 5 +++-- R/rdplot.R | 14 ++++++++++---- R/rdrobust.R | 21 ++++++++++++++------- man/rdbwselect.Rd | 8 ++++---- man/rdplot.Rd | 2 +- man/rdrobust-package.Rd | 7 ++----- man/rdrobust.Rd | 8 ++++---- 10 files changed, 52 insertions(+), 41 deletions(-)
Title: Geostatistical Modelling with Likelihood and Bayes
Description: Geostatistical modelling facilities using Raster and SpatialPoints
objects are provided. Non-Gaussian models are fit using INLA, and Gaussian
geostatistical models use Maximum Likelihood Estimation.
Author: Patrick Brown <patrick.brown@utoronto.ca>[aut, cre], Robert Hijmans
[ctb]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between geostatsp versions 1.5.4 dated 2017-07-19 and 1.6.0 dated 2018-01-03
geostatsp-1.5.4/geostatsp/tests/glgm.R |only geostatsp-1.6.0/geostatsp/DESCRIPTION | 14 geostatsp-1.6.0/geostatsp/MD5 | 64 geostatsp-1.6.0/geostatsp/NAMESPACE | 3 geostatsp-1.6.0/geostatsp/R/0gm.R | 129 + geostatsp-1.6.0/geostatsp/R/NNmat.R | 6 geostatsp-1.6.0/geostatsp/R/glgm.R | 1618 ++++++++++++----------- geostatsp-1.6.0/geostatsp/R/gmrfShape4.R | 135 - geostatsp-1.6.0/geostatsp/R/lgm.R | 4 geostatsp-1.6.0/geostatsp/R/loglikLgm.R | 1372 +++++++++---------- geostatsp-1.6.0/geostatsp/R/maternGmrfPrec.R | 370 ++--- geostatsp-1.6.0/geostatsp/R/pcPriorRange.R |only geostatsp-1.6.0/geostatsp/R/spatialRoc.R | 770 +++++----- geostatsp-1.6.0/geostatsp/build/vignette.rds |binary geostatsp-1.6.0/geostatsp/data/gambiaUTM.RData |binary geostatsp-1.6.0/geostatsp/data/loaloa.RData |binary geostatsp-1.6.0/geostatsp/data/murder.RData |binary geostatsp-1.6.0/geostatsp/data/rongelapUTM.RData |binary geostatsp-1.6.0/geostatsp/data/swissRain.RData |binary geostatsp-1.6.0/geostatsp/data/swissRainR.RData |binary geostatsp-1.6.0/geostatsp/data/torontoPop.RData |binary geostatsp-1.6.0/geostatsp/data/wheat.RData |binary geostatsp-1.6.0/geostatsp/inst/doc/glgm.Rnw |only geostatsp-1.6.0/geostatsp/inst/doc/glgm.pdf |only geostatsp-1.6.0/geostatsp/inst/doc/lgcp.Rnw | 262 +-- geostatsp-1.6.0/geostatsp/inst/doc/lgcp.pdf |binary geostatsp-1.6.0/geostatsp/man/glgm.Rd | 2 geostatsp-1.6.0/geostatsp/man/lgm.Rd | 8 geostatsp-1.6.0/geostatsp/man/matern.Rd | 2 geostatsp-1.6.0/geostatsp/man/pcPriorRange.Rd |only geostatsp-1.6.0/geostatsp/src/gmrfLik.c | 6 geostatsp-1.6.0/geostatsp/src/matern.c | 44 geostatsp-1.6.0/geostatsp/tests/lgcp.R | 18 geostatsp-1.6.0/geostatsp/vignettes/Makefile | 14 geostatsp-1.6.0/geostatsp/vignettes/glgm.Rnw |only geostatsp-1.6.0/geostatsp/vignettes/lgcp.Rnw | 262 +-- 36 files changed, 2627 insertions(+), 2476 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-22 0.1-2
2016-04-20 0.1-1
Title: Robust Gaussian Stochastic Process Emulation
Description: Robust parameter estimation and prediction of Gaussian stochastic process emulators.
Important functions : rgasp(), predict.rgasp().
Author: Mengyang Gu [aut, cre], Jesus Palomo [aut], James Berger [aut]
Maintainer: Mengyang Gu <mgu6@jhu.edu>
Diff between RobustGaSP versions 0.5.3 dated 2017-01-27 and 0.5.4 dated 2018-01-03
CHANGELOG | 6 DESCRIPTION | 6 MD5 | 44 +-- R/RcppExports.R | 44 +-- R/Sample.R | 16 - R/functions.R | 14 - R/predict.R | 90 ------ R/rgasp.R | 50 ++- R/structure.R | 1 build/partial.rdb |binary man/construct_rgasp.Rd | 7 man/generate_predictive_mean_cov.Rd | 7 man/log_marginal_lik.Rd | 7 man/log_marginal_lik_deriv.Rd | 8 man/log_ref_marginal_post.Rd | 8 man/neg_log_marginal_post_approx_ref.Rd | 7 man/neg_log_marginal_post_approx_ref_deriv.Rd | 7 man/neg_log_marginal_post_ref.Rd | 7 man/pred_rgasp.Rd | 7 man/rgasp-class.Rd | 1 man/rgasp.Rd | 35 ++ src/RcppExports.cpp | 194 ++++++++------ src/functions.cpp | 355 ++++++++++++++++++-------- 23 files changed, 574 insertions(+), 347 deletions(-)
Title: Miscellaneous Esoteric Statistical Scripts
Description: A mixed collection of useful and semi-useful diverse
statistical functions, some of which may even be referenced in
The R Primer book.
Author: Claus Thorn Ekstrøm [aut, cre]
Maintainer: Claus Thorn Ekstrøm <claus@rprimer.dk>
Diff between MESS versions 0.4-15 dated 2017-04-09 and 0.5.0 dated 2018-01-03
MESS-0.4-15/MESS/README.md |only MESS-0.4-15/MESS/build |only MESS-0.4-15/MESS/inst/doc |only MESS-0.4-15/MESS/inst/extdata/swarms.pdf |only MESS-0.4-15/MESS/src/MESS_init.c |only MESS-0.4-15/MESS/vignettes |only MESS-0.5.0/MESS/DESCRIPTION | 18 ++--- MESS-0.5.0/MESS/MD5 | 65 ++++++++++-------- MESS-0.5.0/MESS/NAMESPACE | 8 ++ MESS-0.5.0/MESS/R/RcppExports.R | 92 ++++++++++++++++++++++---- MESS-0.5.0/MESS/R/auc.R | 2 MESS-0.5.0/MESS/R/mestimate.R |only MESS-0.5.0/MESS/R/power.mcnemar.test.R | 83 ++++++++++------------- MESS-0.5.0/MESS/R/power.prop.test.R |only MESS-0.5.0/MESS/R/power.t.test.R | 7 + MESS-0.5.0/MESS/R/residualplot.R | 91 ++++++++++++++++--------- MESS-0.5.0/MESS/R/rowmeanscond.R |only MESS-0.5.0/MESS/R/rud.R |only MESS-0.5.0/MESS/R/screener.R | 9 +- MESS-0.5.0/MESS/man/MESS.Rd | 1 MESS-0.5.0/MESS/man/QIC.Rd | 3 MESS-0.5.0/MESS/man/cumsumbinning.Rd |only MESS-0.5.0/MESS/man/ks_cumtest.Rd |only MESS-0.5.0/MESS/man/mestimate.Rd |only MESS-0.5.0/MESS/man/mfastLmCpp.Rd | 9 +- MESS-0.5.0/MESS/man/pairwise_Schur_product.Rd |only MESS-0.5.0/MESS/man/power_mcnemar_test.Rd | 18 +++-- MESS-0.5.0/MESS/man/power_prop_test.Rd |only MESS-0.5.0/MESS/man/power_t_test.Rd | 2 MESS-0.5.0/MESS/man/residualplot.Rd | 22 ++++-- MESS-0.5.0/MESS/man/rowMeansCond.Rd |only MESS-0.5.0/MESS/man/rud.Rd |only MESS-0.5.0/MESS/man/screen_variables.Rd | 9 +- MESS-0.5.0/MESS/man/wallyplot.Rd | 2 MESS-0.5.0/MESS/src/RcppExports.cpp | 78 +++++++++++++++++++--- MESS-0.5.0/MESS/src/cumsumbinning.cpp |only MESS-0.5.0/MESS/src/kstest.cpp |only MESS-0.5.0/MESS/src/mfastLm.cpp | 46 ++++++++----- MESS-0.5.0/MESS/src/pairwise.cpp |only MESS-0.5.0/MESS/src/qdiag.cpp | 2 MESS-0.5.0/MESS/src/trace.cpp | 4 + MESS-0.5.0/MESS/tests |only 42 files changed, 384 insertions(+), 187 deletions(-)
Title: Reading LSD Results (.res) Files
Description: Interfaces R with LSD. Reads object-oriented data in results files (.res) produced by LSD and creates appropriate multi-dimensional arrays in R. Supports multiple core parallelization of multi-file data reading for increased performance. Also provides functions to extract basic information and statistics from data files. LSD (Laboratory for Simulation Development) is free software developed by Marco Valente (documentation and downloads available at <http://labsimdev.org>).
Author: Marcelo C. Pereira
Maintainer: Marcelo C. Pereira <marcelocpereira@uol.com.br>
Diff between LSDinterface versions 0.3.1 dated 2017-11-27 and 0.3.3 dated 2018-01-03
DESCRIPTION | 8 +++--- MD5 | 38 ++++++++++++++-------------- build/partial.rdb |binary man/info.details.lsd.Rd | 16 ++++-------- man/info.dimensions.lsd.Rd | 13 +++------ man/info.init.lsd.Rd | 16 ++++-------- man/info.names.lsd.Rd | 12 +++------ man/info.stats.lsd.Rd | 32 ++++++++++++------------ man/name.check.lsd.Rd | 15 +++-------- man/name.clean.lsd.Rd | 4 +-- man/name.nice.lsd.Rd | 6 ++-- man/name.var.lsd.Rd | 4 +-- man/read.3d.lsd.Rd | 46 +++++++++++++++++++++-------------- man/read.4d.lsd.Rd | 59 ++++++++++++++++++++++++++++----------------- man/read.list.lsd.Rd | 36 +++++++++++++++++---------- man/read.multi.lsd.Rd | 31 ++++++++++++----------- man/read.raw.lsd.Rd | 21 ++++++++-------- man/read.single.lsd.Rd | 22 +++++++--------- man/select.colattrs.lsd.Rd | 21 ++++++---------- man/select.colnames.lsd.Rd | 16 ++++-------- 20 files changed, 212 insertions(+), 204 deletions(-)
Title: Formula Interface to the Grammar of Graphics
Description: Provides a formula interface to 'ggplot2' graphics.
Author: Daniel Kaplan [aut],
Randall Pruim [aut, cre]
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between ggformula versions 0.6 dated 2017-08-26 and 0.6.1 dated 2018-01-03
ggformula-0.6.1/ggformula/DESCRIPTION | 10 ggformula-0.6.1/ggformula/MD5 | 47 +--- ggformula-0.6.1/ggformula/NAMESPACE | 4 ggformula-0.6.1/ggformula/R/gf_function_helpers.R | 19 + ggformula-0.6.1/ggformula/R/gf_functions.R | 40 +++ ggformula-0.6.1/ggformula/R/newplots.R | 107 +++++++++- ggformula-0.6.1/ggformula/build/vignette.rds |binary ggformula-0.6.1/ggformula/inst/doc/ggformula-blog.Rmd | 2 ggformula-0.6.1/ggformula/inst/doc/ggformula-blog.html | 4 ggformula-0.6.1/ggformula/inst/doc/ggformula.R | 64 ++--- ggformula-0.6.1/ggformula/inst/doc/ggformula.Rmd | 67 ++---- ggformula-0.6.1/ggformula/inst/doc/ggformula.html | 16 - ggformula-0.6.1/ggformula/inst/tutorials/introduction/Plotting_with_formulas.Rmd | 71 ++++++ ggformula-0.6.1/ggformula/inst/tutorials/introduction/Plotting_with_formulas.html | 89 +++++++- ggformula-0.6.1/ggformula/inst/tutorials/refining/Refining_ggformula.html | 6 ggformula-0.6.1/ggformula/inst/tutorials/refining/Refining_ggformula_files/figure-html4 |only ggformula-0.6.1/ggformula/man/gf_fitdistr.Rd |only ggformula-0.6.1/ggformula/man/ggformula-ggproto.Rd | 13 + ggformula-0.6.1/ggformula/man/stat_fitdistr.Rd |only ggformula-0.6.1/ggformula/vignettes/ggformula-blog.Rmd | 2 ggformula-0.6.1/ggformula/vignettes/ggformula.Rmd | 67 ++---- ggformula-0.6/ggformula/inst/tutorials/introduction/Plotting_with_formulas_files |only ggformula-0.6/ggformula/inst/tutorials/refining/Refining_ggformula_files/figure-html |only 23 files changed, 461 insertions(+), 167 deletions(-)
Title: Discourse API Client
Description: Client for the Discourse API. Discourse is a open source
discussion forum platform (<https://www.discourse.org/>). It comes with 'RESTful'
API access to an installation. This client requires that you are authorized
to access a Discourse installation, either yours or another.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between discgolf versions 0.1.0 dated 2016-04-21 and 0.2.0 dated 2018-01-03
DESCRIPTION | 18 +++++------ LICENSE | 2 - MD5 | 62 +++++++++++++++++++-------------------- NAMESPACE | 10 ------ NEWS.md | 8 +++++ R/badges.R | 37 +++++++++++------------ R/categories.R | 10 +++--- R/discgolf-package.R | 4 -- R/groups.R | 7 ++-- R/http.R | 58 ++++++++++++++++++++++-------------- R/posts.R | 26 ++++++++-------- R/private_messages.R | 7 +++- R/search.R | 6 ++- R/topics.R | 17 +++++----- R/users.R | 41 +++++++++++++++---------- README.md | 6 +++ man/badges.Rd | 32 ++++++++------------ man/categories.Rd | 19 ++++++----- man/dg_search.Rd | 19 ++++++----- man/discgolf-package.Rd | 3 - man/email.Rd | 13 ++++---- man/groups.Rd | 19 ++++++----- man/notifications.Rd | 13 ++++---- man/posts.Rd | 37 +++++++++++------------ man/private_messages.Rd | 13 ++++---- man/tag.Rd | 13 ++++---- man/topics.Rd | 28 ++++++++--------- man/users.Rd | 30 ++++++++++-------- tests/testthat/test-badges.R | 8 +---- tests/testthat/test-categories.R | 15 +++------ tests/testthat/test-posts.R | 8 +---- tests/testthat/test-topics.R | 8 +---- 32 files changed, 311 insertions(+), 286 deletions(-)
Title: Local Time Space Kriging
Description: Implements local spatial and local spatiotemporal Kriging based on local spatial and local spatiotemporal variograms, respectively.
Author: Naresh Kumar, Dong Liang, Jin Chen, Jun Chen
Maintainer: Dong Liang <dliang@umces.edu>
Diff between ltsk versions 1.0.4 dated 2015-09-11 and 1.0.5 dated 2018-01-03
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- NAMESPACE | 2 +- R/cltsk.R | 19 +++++++++++++------ R/lk.R | 14 +++++++++++--- R/ltsk.R | 20 ++++++++++++++------ man/cltsk.Rd | 4 ++-- man/lk.Rd | 4 ++-- man/ltsk.Rd | 4 ++-- man/ltsk.cv.Rd | 2 +- src/ltsk.cpp | 4 ++-- src/ltsk_init.c |only 12 files changed, 63 insertions(+), 39 deletions(-)
Title: Connector to 'CouchDB'
Description: Provides an interface to the 'NoSQL' database 'CouchDB'
(<http://couchdb.apache.org>). Methods are provided for managing
databases within 'CouchDB', including creating/deleting/updating/transferring,
and managing documents within databases. One can connect with a local
'CouchDB' instance, or a remote 'CouchDB' databases such as 'Cloudant'
(<https://docs.cloudant.com>). Documents can be inserted directly from
vectors, lists, data.frames, and 'JSON'. Targeted at 'CouchDB' v2 or
greater.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between sofa versions 0.2.0 dated 2016-10-12 and 0.3.0 dated 2018-01-03
sofa-0.2.0/sofa/R/db_updates.R |only sofa-0.2.0/sofa/man/db_updates.Rd |only sofa-0.3.0/sofa/DESCRIPTION | 14 sofa-0.3.0/sofa/LICENSE | 2 sofa-0.3.0/sofa/MD5 | 176 +-- sofa-0.3.0/sofa/NAMESPACE | 19 sofa-0.3.0/sofa/NEWS.md | 32 sofa-0.3.0/sofa/R/active_tasks.R | 3 sofa-0.3.0/sofa/R/attach.r | 67 - sofa-0.3.0/sofa/R/cushion.R | 43 sofa-0.3.0/sofa/R/databases.r | 14 sofa-0.3.0/sofa/R/db_alldocs.R | 38 sofa-0.3.0/sofa/R/db_bulk_create.R | 30 sofa-0.3.0/sofa/R/db_bulk_update.R | 16 sofa-0.3.0/sofa/R/db_changes.R | 31 sofa-0.3.0/sofa/R/db_compact.R | 10 sofa-0.3.0/sofa/R/db_create.r | 7 sofa-0.3.0/sofa/R/db_delete.r | 7 sofa-0.3.0/sofa/R/db_explain.R | 17 sofa-0.3.0/sofa/R/db_index.R |only sofa-0.3.0/sofa/R/db_info.r | 3 sofa-0.3.0/sofa/R/db_list.r | 6 sofa-0.3.0/sofa/R/db_query.R | 16 sofa-0.3.0/sofa/R/db_replicate.r | 18 sofa-0.3.0/sofa/R/design.R | 47 sofa-0.3.0/sofa/R/design_search.R | 187 ++- sofa-0.3.0/sofa/R/doc_create.r | 59 - sofa-0.3.0/sofa/R/doc_delete.r | 5 sofa-0.3.0/sofa/R/doc_get.r | 3 sofa-0.3.0/sofa/R/doc_head.r | 17 sofa-0.3.0/sofa/R/doc_update.r | 6 sofa-0.3.0/sofa/R/documents.r | 26 sofa-0.3.0/sofa/R/getattach.r | 10 sofa-0.3.0/sofa/R/membership.R | 2 sofa-0.3.0/sofa/R/parse_df.R | 13 sofa-0.3.0/sofa/R/ping.r | 7 sofa-0.3.0/sofa/R/restart.R | 2 sofa-0.3.0/sofa/R/revisions.r | 14 sofa-0.3.0/sofa/R/session.R | 2 sofa-0.3.0/sofa/R/sofa-package.r | 11 sofa-0.3.0/sofa/R/uuids.r | 3 sofa-0.3.0/sofa/R/zzz.r | 127 +- sofa-0.3.0/sofa/README.md | 97 - sofa-0.3.0/sofa/build/vignette.rds |binary sofa-0.3.0/sofa/inst/doc/query_tutorial.html | 1443 +++++++++++++++++++++++++-- sofa-0.3.0/sofa/inst/doc/sofa_vignette.Rmd | 183 +-- sofa-0.3.0/sofa/inst/doc/sofa_vignette.html | 180 +-- sofa-0.3.0/sofa/inst/ignore/db_updates.R |only sofa-0.3.0/sofa/inst/vign/sofa_vignette.Rmd | 61 - sofa-0.3.0/sofa/inst/vign/sofa_vignette.md | 183 +-- sofa-0.3.0/sofa/man/Cushion.Rd | 54 - sofa-0.3.0/sofa/man/active_tasks.Rd | 7 sofa-0.3.0/sofa/man/attach_get.Rd | 13 sofa-0.3.0/sofa/man/attachments.Rd | 33 sofa-0.3.0/sofa/man/databases.Rd | 11 sofa-0.3.0/sofa/man/db_alldocs.Rd | 34 sofa-0.3.0/sofa/man/db_bulk_create.Rd | 15 sofa-0.3.0/sofa/man/db_bulk_update.Rd | 15 sofa-0.3.0/sofa/man/db_changes.Rd | 27 sofa-0.3.0/sofa/man/db_compact.Rd | 19 sofa-0.3.0/sofa/man/db_create.Rd | 11 sofa-0.3.0/sofa/man/db_delete.Rd | 11 sofa-0.3.0/sofa/man/db_explain.Rd | 12 sofa-0.3.0/sofa/man/db_index.Rd |only sofa-0.3.0/sofa/man/db_info.Rd | 7 sofa-0.3.0/sofa/man/db_list.Rd | 7 sofa-0.3.0/sofa/man/db_query.Rd | 20 sofa-0.3.0/sofa/man/db_replicate.Rd | 11 sofa-0.3.0/sofa/man/db_revisions.Rd | 9 sofa-0.3.0/sofa/man/design.Rd | 23 sofa-0.3.0/sofa/man/design_search.Rd | 167 +-- sofa-0.3.0/sofa/man/doc_create.Rd | 31 sofa-0.3.0/sofa/man/doc_delete.Rd | 9 sofa-0.3.0/sofa/man/doc_get.Rd | 7 sofa-0.3.0/sofa/man/doc_head.Rd | 15 sofa-0.3.0/sofa/man/doc_update.Rd | 7 sofa-0.3.0/sofa/man/documents.Rd | 23 sofa-0.3.0/sofa/man/membership.Rd | 7 sofa-0.3.0/sofa/man/parse_df.Rd | 14 sofa-0.3.0/sofa/man/ping.Rd | 13 sofa-0.3.0/sofa/man/restart.Rd | 7 sofa-0.3.0/sofa/man/session.Rd | 7 sofa-0.3.0/sofa/man/sofa-package.Rd | 8 sofa-0.3.0/sofa/man/uuids.Rd | 7 sofa-0.3.0/sofa/tests |only sofa-0.3.0/sofa/vignettes/sofa_vignette.Rmd | 183 +-- 86 files changed, 2699 insertions(+), 1402 deletions(-)
Title: R-Squared and Related Measures
Description: Calculate generalized R-squared, partial R-squared, and partial correlation coefficients for generalized linear models (including quasi models with well defined variance functions).
Author: Dabao Zhang
Maintainer: Dabao Zhang <zhangdb@stat.purdue.edu>
Diff between rsq versions 1.0 dated 2017-03-28 and 1.0.1 dated 2018-01-03
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/rsq.R | 24 ++++++++++++++---------- 3 files changed, 20 insertions(+), 16 deletions(-)
Title: Retrieve Data from MacLeish Field Station
Description: Download data from the Ada and Archibald MacLeish Field
Station in Whately, MA. The Ada
and Archibald MacLeish Field Station is a 260-acre patchwork of
forest and farmland located in West Whately, MA that provides opportunities
for faculty and students to pursue environmental research, outdoor
education, and low-impact recreation
(see <http://www.smith.edu/ceeds/macleish.php> for more information).
This package contains
weather data over several years, and spatial data on various man-made and
natural structures.
Author: Benjamin S. Baumer [aut, cre],
Rose Goueth [aut],
Wencong Li [aut],
Weijia Zhang [aut],
Nicholas Horton [aut]
Maintainer: Benjamin S. Baumer <ben.baumer@gmail.com>
Diff between macleish versions 0.3.1 dated 2017-09-28 and 0.3.2 dated 2018-01-03
DESCRIPTION | 15 +- MD5 | 14 +- NEWS.md | 4 build/vignette.rds |binary inst/doc/macleish.R | 10 + inst/doc/macleish.Rmd | 10 + inst/doc/macleish.html | 291 ++++++++++++++++++++++++------------------------- vignettes/macleish.Rmd | 10 + 8 files changed, 183 insertions(+), 171 deletions(-)
Title: Spectral Decomposition of Connectedness Measures
Description: Accompanies a paper (Barunik, Krehlik (2017) <doi:10.2139/ssrn.2627599>) dedicated to spectral decomposition of connectedness measures and their interpretation. We implement all the developed estimators as well as the historical counterparts. For more information, see the help or GitHub page (<https://github.com/tomaskrehlik/frequencyConnectedness>) for relevant information.
Author: Tomas Krehlik [aut, cre]
Maintainer: Tomas Krehlik <tomas.krehlik@gmail.com>
Diff between frequencyConnectedness versions 0.1.6 dated 2017-06-09 and 0.2.0 dated 2018-01-03
frequencyConnectedness-0.1.6/frequencyConnectedness/R/directionalSpillovers.R |only frequencyConnectedness-0.1.6/frequencyConnectedness/R/spilloverTable.R |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/absolute_from.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/absolute_pairwise.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/absolute_to.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/collapseAll.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/createSpilloverTable.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/fromSpillovers.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/get_absolute_from.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/get_absolute_net.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/get_absolute_pairwise.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/get_absolute_to.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/get_type.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/get_within_from.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/get_within_net.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/get_within_pairwise.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/get_within_to.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/makeStructure.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/plotSpills.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/plotSpillsAll.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/plot_spills.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/spilloverRollingFft.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/toSpillovers.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/within_from.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/within_pairwise.Rd |only frequencyConnectedness-0.1.6/frequencyConnectedness/man/within_to.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/DESCRIPTION | 14 frequencyConnectedness-0.2.0/frequencyConnectedness/MD5 | 104 +-- frequencyConnectedness-0.2.0/frequencyConnectedness/NAMESPACE | 48 + frequencyConnectedness-0.2.0/frequencyConnectedness/NEWS | 16 frequencyConnectedness-0.2.0/frequencyConnectedness/R/fevd.R | 213 +++++-- frequencyConnectedness-0.2.0/frequencyConnectedness/R/list_of_spills_methods.R |only frequencyConnectedness-0.2.0/frequencyConnectedness/R/onAttach.R |only frequencyConnectedness-0.2.0/frequencyConnectedness/R/spillover_table_methods.R |only frequencyConnectedness-0.2.0/frequencyConnectedness/R/spillovers.R | 300 +--------- frequencyConnectedness-0.2.0/frequencyConnectedness/R/spilloversRolling.R |only frequencyConnectedness-0.2.0/frequencyConnectedness/R/spillovers_exported_methods.R |only frequencyConnectedness-0.2.0/frequencyConnectedness/R/tools.R | 40 - frequencyConnectedness-0.2.0/frequencyConnectedness/data/volatilities.rda |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/collapseBounds.Rd | 22 frequencyConnectedness-0.2.0/frequencyConnectedness/man/collapseBounds.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/collapseBounds.spillover_table.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/exampleSim.Rd | 2 frequencyConnectedness-0.2.0/frequencyConnectedness/man/from.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/from.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/from.spillover_table.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/genFEVD.Rd | 6 frequencyConnectedness-0.2.0/frequencyConnectedness/man/net.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/net.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/net.spillover_table.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/overall.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/overall.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/overall.spillover_table.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/pairwise.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/pairwise.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/pairwise.spillover_table.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/plotFrom.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/plotFrom.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/plotNet.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/plotNet.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/plotOverall.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/plotOverall.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/plotPairwise.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/plotPairwise.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/plotTo.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/plotTo.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/print.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/print.spillover_table.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/spillover.Rd | 7 frequencyConnectedness-0.2.0/frequencyConnectedness/man/spilloverBK09.Rd | 11 frequencyConnectedness-0.2.0/frequencyConnectedness/man/spilloverBK12.Rd | 11 frequencyConnectedness-0.2.0/frequencyConnectedness/man/spilloverDY09.Rd | 7 frequencyConnectedness-0.2.0/frequencyConnectedness/man/spilloverDY12.Rd | 7 frequencyConnectedness-0.2.0/frequencyConnectedness/man/spilloverFft.Rd | 8 frequencyConnectedness-0.2.0/frequencyConnectedness/man/spilloverRolling.Rd | 24 frequencyConnectedness-0.2.0/frequencyConnectedness/man/spilloverRollingBK09.Rd | 32 - frequencyConnectedness-0.2.0/frequencyConnectedness/man/spilloverRollingBK12.Rd | 27 frequencyConnectedness-0.2.0/frequencyConnectedness/man/spilloverRollingDY09.Rd | 22 frequencyConnectedness-0.2.0/frequencyConnectedness/man/spilloverRollingDY12.Rd | 22 frequencyConnectedness-0.2.0/frequencyConnectedness/man/to.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/to.list_of_spills.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/to.spillover_table.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/man/volatilities.Rd |only frequencyConnectedness-0.2.0/frequencyConnectedness/tests/testthat/test-basic.r | 205 +++++- 84 files changed, 555 insertions(+), 593 deletions(-)
More information about frequencyConnectedness at CRAN
Permanent link
Title: Assessment and Evaluation of Formations in United
Description: United is a software tool which can be downloaded at the following
website <http://www.schroepl.net/pbm/software/united/>. In general, it is
a virtual manager game for football teams. This package contains helpful
functions for determining an optimal formation for a virtual match in
United. E.g. knowing that the opponent has a strong defensive it is
advisable to beat him in the midfield. Furthermore, this package contains
functions for computing the optimal usage of hardness in a game.
Author: David Schindler [aut, cre]
Maintainer: David Schindler <dv.schindler@gmail.com>
Diff between unitedR versions 0.2 dated 2015-12-04 and 0.3 dated 2018-01-03
DESCRIPTION | 7 ++-- MD5 | 46 +++++++++++++++---------------- NAMESPACE | 2 - R/formation.R | 38 ++++++++++++++------------ R/penaltyGoalsProb.R | 5 ++- R/simRedCard.R | 10 +++++- R/unitedRPackage.R | 6 ++-- R/unitedRoverview.R | 3 ++ R/unitedSim.R | 40 ++++++++++++++++++++++++--- R/unitedSimClass.R | 13 ++++---- R/unitedSimOne.R | 70 ++++++++++++++++++++++++++++++++++++++---------- build/vignette.rds |binary inst/doc/unitedR.Rnw | 1 inst/doc/unitedR.pdf |binary man/formation.Rd | 9 ++---- man/getLineup.Rd | 12 ++++---- man/overview.Rd | 20 ++++++++----- man/penaltyGoalsProb.Rd | 7 ++-- man/simRedCard.Rd | 22 +++++++++------ man/summary.Rd | 7 ++-- man/unitedR-package.Rd | 15 ++++------ man/unitedSim.Rd | 35 +++++++++++++++++++----- man/unitedSimOne.Rd | 23 ++++++++++----- vignettes/unitedR.Rnw | 1 24 files changed, 261 insertions(+), 131 deletions(-)
Title: Age-Depth Modelling using Bayesian Statistics
Description: Bacon is an approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for deposits, through combining radiocarbon and other dates with prior information. See Blaauw & Christen (2011) <doi:10.1214/11-BA618>.
Author: Maarten Blaauw [aut, cre],
J. Andres Christen [aut],
Judith Esquivel Vazquez [ctb],
Ted Belding [cph],
James Theiler [cph],
Brian Gough [cph],
Charles Karney [cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rbacon versions 2.3.1.1 dated 2017-12-15 and 2.3.1.2 dated 2018-01-03
rbacon-2.3.1.1/rbacon/man/flux.age.Rd |only rbacon-2.3.1.2/rbacon/DESCRIPTION | 16 rbacon-2.3.1.2/rbacon/MD5 | 47 - rbacon-2.3.1.2/rbacon/NAMESPACE | 3 rbacon-2.3.1.2/rbacon/R/Bacon.R | 576 ++++++++++++++-------- rbacon-2.3.1.2/rbacon/man/AgesOfEvents.Rd | 6 rbacon-2.3.1.2/rbacon/man/Bacon.Age.d.Rd | 8 rbacon-2.3.1.2/rbacon/man/Bacon.Rd | 11 rbacon-2.3.1.2/rbacon/man/Bacon.cleanup.Rd | 2 rbacon-2.3.1.2/rbacon/man/Bacon.hist.Rd | 16 rbacon-2.3.1.2/rbacon/man/Bacon_runs.Rd | 2 rbacon-2.3.1.2/rbacon/man/Baconvergence.Rd | 2 rbacon-2.3.1.2/rbacon/man/accrate.age.Rd | 10 rbacon-2.3.1.2/rbacon/man/accrate.age.ghost.Rd | 47 + rbacon-2.3.1.2/rbacon/man/accrate.depth.Rd | 11 rbacon-2.3.1.2/rbacon/man/accrate.depth.ghost.Rd | 26 rbacon-2.3.1.2/rbacon/man/add.date.Rd |only rbacon-2.3.1.2/rbacon/man/agedepth.Rd | 10 rbacon-2.3.1.2/rbacon/man/calib.plot.Rd | 6 rbacon-2.3.1.2/rbacon/man/copyCalibrationCurve.Rd | 16 rbacon-2.3.1.2/rbacon/man/flux.age.ghost.Rd |only rbacon-2.3.1.2/rbacon/man/proxy.ghost.Rd | 12 rbacon-2.3.1.2/rbacon/man/scissors.Rd | 4 rbacon-2.3.1.2/rbacon/man/thinner.Rd | 4 rbacon-2.3.1.2/rbacon/src/events.cpp | 2 rbacon-2.3.1.2/rbacon/src/twalk.h | 25 26 files changed, 521 insertions(+), 341 deletions(-)
More information about ConvergenceClubs at CRAN
Permanent link
Title: Programmatic Access to Data and Statistics from the World Bank
API
Description: Tools for searching and downloading data and statistics from
the World Bank Data API (<http://data.worldbank.org/developers/api-overview>)
and the World Bank Data Catalog API (<http://data.worldbank.org/developers/data-catalog-api>).
Author: Jesse Piburn [aut, cre],
UT-Battelle, LLC [cph]
Maintainer: Jesse Piburn <piburnjo@ornl.gov>
Diff between wbstats versions 0.1.1 dated 2016-12-08 and 0.2 dated 2018-01-03
wbstats-0.1.1/wbstats/NEWS |only wbstats-0.1.1/wbstats/man/wbget.dc.Rd |only wbstats-0.1.1/wbstats/man/wbget.raw.Rd |only wbstats-0.2/wbstats/DESCRIPTION | 13 wbstats-0.2/wbstats/LICENSE | 2 wbstats-0.2/wbstats/MD5 | 72 +- wbstats-0.2/wbstats/NAMESPACE | 2 wbstats-0.2/wbstats/NEWS.md |only wbstats-0.2/wbstats/R/data.R | 2 wbstats-0.2/wbstats/R/utilities.R | 124 +++- wbstats-0.2/wbstats/R/wb.R | 123 +++- wbstats-0.2/wbstats/R/wbcache.R | 37 - wbstats-0.2/wbstats/README.md | 300 +++++----- wbstats-0.2/wbstats/build/vignette.rds |binary wbstats-0.2/wbstats/data/wb_cachelist.RData |binary wbstats-0.2/wbstats/inst/CITATION | 8 wbstats-0.2/wbstats/inst/doc/Using_the_wbstats_package.R | 36 - wbstats-0.2/wbstats/inst/doc/Using_the_wbstats_package.Rmd | 46 - wbstats-0.2/wbstats/inst/doc/Using_the_wbstats_package.html | 344 ++++++------ wbstats-0.2/wbstats/man/call_api.Rd |only wbstats-0.2/wbstats/man/wb.Rd | 53 + wbstats-0.2/wbstats/man/wb_cachelist.Rd | 5 wbstats-0.2/wbstats/man/wbcache.Rd | 5 wbstats-0.2/wbstats/man/wbcountries.Rd | 3 wbstats-0.2/wbstats/man/wbdatacatalog.Rd | 3 wbstats-0.2/wbstats/man/wbdate2POSIXct.Rd | 3 wbstats-0.2/wbstats/man/wbformatcols.Rd | 3 wbstats-0.2/wbstats/man/wbget.Rd | 9 wbstats-0.2/wbstats/man/wbget_dc.Rd |only wbstats-0.2/wbstats/man/wbincome.Rd | 3 wbstats-0.2/wbstats/man/wbindicators.Rd | 5 wbstats-0.2/wbstats/man/wblending.Rd | 3 wbstats-0.2/wbstats/man/wbsearch.Rd | 3 wbstats-0.2/wbstats/man/wbsources.Rd | 3 wbstats-0.2/wbstats/man/wbstats.Rd | 3 wbstats-0.2/wbstats/man/wbtopics.Rd | 3 wbstats-0.2/wbstats/man/wburls.Rd | 3 wbstats-0.2/wbstats/tools |only wbstats-0.2/wbstats/vignettes/Using_the_wbstats_package.Rmd | 46 - wbstats-0.2/wbstats/vignettes/figures |only 40 files changed, 740 insertions(+), 525 deletions(-)
More information about reinforcelearn at CRAN
Permanent link
Title: Client for the 'Pangaea' Database
Description: Tools to interact with the 'Pangaea' Database
(<https://www.pangaea.de>), including functions for searching for data,
fetching 'datasets' by 'dataset' 'ID', and working with the 'Pangaea'
'OAI-PMH' service.
Author: Scott Chamberlain [aut, cre],
Kara Woo [aut],
Andrew MacDonald [aut],
Naupaka Zimmerman [aut],
Gavin Simpson [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between pangaear versions 0.3.0 dated 2017-03-08 and 0.6.0 dated 2018-01-03
DESCRIPTION | 13 - LICENSE | 2 MD5 | 60 ++++---- NAMESPACE | 6 NEWS.md | 10 + R/pangaear-package.R | 2 R/pg_data.R | 219 +++++++++++++++++++---------- R/pg_get_record.R | 7 R/pg_identify.R | 2 R/pg_list_identifiers.R | 1 R/pg_list_metadata_formats.R | 2 R/pg_list_records.R | 2 R/pg_list_sets.R | 4 R/pg_search.R | 13 - R/pg_search_es.R | 9 - R/zzz.R | 2 README.md | 270 +++++++++++++++--------------------- build |only inst |only man/pg_data.Rd | 45 ++++-- man/pg_get_record.Rd | 7 man/pg_identify.Rd | 2 man/pg_list_identifiers.Rd | 2 man/pg_list_metadata_formats.Rd | 2 man/pg_list_records.Rd | 2 man/pg_list_sets.Rd | 4 man/pg_search.Rd | 5 man/pg_search_es.Rd | 2 tests/testthat/test-oai_functions.R | 2 tests/testthat/test-pg_data.R | 38 ++++- vignettes |only 31 files changed, 413 insertions(+), 322 deletions(-)
Title: Load Census TIGER/Line Shapefiles into R
Description: Download TIGER/Line shapefiles from the United States Census Bureau
and load into R as 'SpatialDataFrame' or 'sf' objects.
Author: Kyle Walker [aut, cre],
Bob Rudis [ctb]
Maintainer: Kyle Walker <kyle.walker@tcu.edu>
Diff between tigris versions 0.5.3 dated 2017-05-26 and 0.6.1 dated 2018-01-03
DESCRIPTION | 16 +- MD5 | 109 +++++++------ NAMESPACE | 15 + NEWS | 8 + R/enumeration_units.R | 230 ++++++++++++++++++++++++----- R/geocode.R |only R/helpers.R | 76 ++++++++- R/landmarks.R | 16 +- R/legislative.R | 49 ++++-- R/metro_areas.R | 70 +++++--- R/national.R | 18 +- R/native.R | 36 ++-- R/places.R | 17 +- R/pumas.R | 8 - R/states.R | 48 +++++- R/tigris-package.R | 5 R/transportation.R | 24 +-- R/water.R | 18 +- R/zzz.R | 12 - README.md | 45 ++--- man/alaska_native_regional_corporations.Rd | 2 man/append_geoid.Rd |only man/area_water.Rd | 2 man/block_groups.Rd | 2 man/blocks.Rd | 2 man/call_geolocator.Rd |only man/call_geolocator_latlon.Rd |only man/coastline.Rd | 2 man/combined_statistical_areas.Rd | 2 man/congressional_districts.Rd | 2 man/core_based_statistical_areas.Rd | 2 man/counties.Rd | 2 man/county_subdivisions.Rd | 2 man/divisions.Rd | 2 man/landmarks.Rd | 4 man/linear_water.Rd | 2 man/metro_divisions.Rd | 4 man/military.Rd | 2 man/nation.Rd | 2 man/native_areas.Rd | 2 man/new_england.Rd | 4 man/places.Rd | 2 man/primary_roads.Rd | 2 man/primary_secondary_roads.Rd | 2 man/pumas.Rd | 2 man/rails.Rd | 2 man/regions.Rd | 2 man/roads.Rd | 2 man/school_districts.Rd | 2 man/state_legislative_districts.Rd | 2 man/states.Rd | 2 man/tigris_cache_dir.Rd |only man/tracts.Rd | 2 man/tribal_block_groups.Rd | 2 man/tribal_census_tracts.Rd | 2 man/tribal_subdivisions_national.Rd | 2 man/urban_areas.Rd | 2 man/zctas.Rd | 2 58 files changed, 598 insertions(+), 296 deletions(-)
Title: MCMC Sampling of Gene Genealogies Conditional on Genetic Data
Description: Sample ancestral trees conditional on phased or unphased SNP genotype data. The actual tree sampling is done using a C++ program that is launched within R. The package also contains functions for specifying the tree-sampling settings (pre-processing) and for storing and manipulating the sampled trees (post-processing). More information about 'sampletrees' can be found at <http://stat.sfu.ca/statgen/research/sampletrees.html>.
Author: Kelly Burkett, Brad McNeney, Jinko Graham, Jean-Francois Lefebvre
Maintainer: Kelly Burkett <Rsampletrees@gmail.com>
Diff between Rsampletrees versions 1.0.1 dated 2017-08-29 and 1.0.2 dated 2018-01-03
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/pre_sampletrees.R | 4 +++- src/rcpp_sampletrees.cpp | 14 ++++++++++++++ 4 files changed, 25 insertions(+), 9 deletions(-)
Title: Data-Driven Diagnostic Plots
Description: Designs plots in terms of core structure. See 'example(metaplot)'.
Primary arguments are (unquoted) column names; order and type (numeric or not)
dictate the resulting plot. Specify any y variables, x variable, any groups variable,
and any conditioning variables to metaplot() to generate density plots, boxplots,
scatterplots, scatterplot matrices, or conditioned plots. Use multiplot() to arrange
plots in grids. Wherever present, scalar column attributes 'label' and 'guide' are
honored, producing fully annotated plots with minimal effort. Attribute 'guide'
is typically units, but may be encoded() to provide interpretations of categorical
values (see '?encode'). Utility unpack() transforms scalar column attributes to row
values and pack() does the reverse, supporting tool-neutral storage of metadata along
with primary data. The package supports customizable aesthetics such as such as reference
lines, unity lines, smooths, log transformation, and linear fits. Compact syntax and
integrated metadata promote workflow scalability.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between metaplot versions 0.2.7 dated 2017-12-01 and 0.3.1 dated 2018-01-03
metaplot-0.2.7/metaplot/man/axislabel.folded.Rd |only metaplot-0.2.7/metaplot/man/boxplot.folded.Rd |only metaplot-0.2.7/metaplot/man/corsplom.folded.Rd |only metaplot-0.2.7/metaplot/man/dens.Rd |only metaplot-0.2.7/metaplot/man/dens.data.frame.Rd |only metaplot-0.2.7/metaplot/man/dens.folded.Rd |only metaplot-0.2.7/metaplot/man/dens_data_frame.Rd |only metaplot-0.2.7/metaplot/man/guide.Rd |only metaplot-0.2.7/metaplot/man/guide.folded.Rd |only metaplot-0.2.7/metaplot/man/label.Rd |only metaplot-0.2.7/metaplot/man/label.folded.Rd |only metaplot-0.2.7/metaplot/man/metaplot.folded.Rd |only metaplot-0.2.7/metaplot/man/pack.folded.Rd |only metaplot-0.2.7/metaplot/man/scatter.folded.Rd |only metaplot-0.2.7/metaplot/man/unpack.folded.Rd |only metaplot-0.3.1/metaplot/DESCRIPTION | 32 - metaplot-0.3.1/metaplot/MD5 | 77 +-- metaplot-0.3.1/metaplot/NAMESPACE | 24 - metaplot-0.3.1/metaplot/R/box.R | 178 +++---- metaplot-0.3.1/metaplot/R/categorical.R |only metaplot-0.3.1/metaplot/R/corsplom.R | 59 -- metaplot-0.3.1/metaplot/R/density.R | 141 +++--- metaplot-0.3.1/metaplot/R/metaplot.R | 91 --- metaplot-0.3.1/metaplot/R/pack.R | 68 -- metaplot-0.3.1/metaplot/R/scatter.R | 457 +++++++------------- metaplot-0.3.1/metaplot/R/utils.R | 111 ---- metaplot-0.3.1/metaplot/inst/extdata/theoph.csv | 2 metaplot-0.3.1/metaplot/man/axislabel.Rd | 9 metaplot-0.3.1/metaplot/man/axislabel.data.frame.Rd | 5 metaplot-0.3.1/metaplot/man/boxplot.data.frame.Rd | 44 - metaplot-0.3.1/metaplot/man/boxplot_data_frame.Rd | 28 - metaplot-0.3.1/metaplot/man/categorical.Rd | 8 metaplot-0.3.1/metaplot/man/corsplom.Rd | 9 metaplot-0.3.1/metaplot/man/corsplom.data.frame.Rd | 33 - metaplot-0.3.1/metaplot/man/corsplom_data_frame.Rd | 18 metaplot-0.3.1/metaplot/man/densplot.Rd |only metaplot-0.3.1/metaplot/man/densplot.data.frame.Rd |only metaplot-0.3.1/metaplot/man/densplot_data_frame.Rd |only metaplot-0.3.1/metaplot/man/metapanel.Rd | 23 - metaplot-0.3.1/metaplot/man/metaplot.Rd | 10 metaplot-0.3.1/metaplot/man/metaplot.data.frame.Rd | 56 +- metaplot-0.3.1/metaplot/man/pack.Rd | 7 metaplot-0.3.1/metaplot/man/pack.data.frame.Rd | 8 metaplot-0.3.1/metaplot/man/scatter.Rd | 16 metaplot-0.3.1/metaplot/man/scatter.data.frame.Rd | 85 --- metaplot-0.3.1/metaplot/man/scatter_data_frame.Rd | 67 +- metaplot-0.3.1/metaplot/man/u.p.Rd | 2 metaplot-0.3.1/metaplot/man/unpack.Rd | 5 metaplot-0.3.1/metaplot/man/unpack.data.frame.Rd | 6 49 files changed, 650 insertions(+), 1029 deletions(-)
Title: Implementation Helper for [ and [<- Of Custom Matrix-Like Types
Description: Functions to help implement the extraction / subsetting / indexing
function [ and replacement function [<- of custom matrix-like types (based
on S3, S4, etc.), modeled as closely to the base matrix class as possible
(with tests to prove it).
Author: Alexander Grueneberg [aut, cre]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>
Diff between crochet versions 1.0.0 dated 2017-05-06 and 2.0.0 dated 2018-01-03
DESCRIPTION | 6 - MD5 | 21 ++- NAMESPACE | 2 NEWS.md |only R/crochet.R | 91 +++++++++++++-- README.md | 196 +++++++++++++++++++++++++--------- man/extract.Rd | 11 + man/ijtok.Rd |only man/ktoij.Rd |only man/replace.Rd | 11 + tests/testthat/helper.R | 188 ++++++++++++++++++++------------ tests/testthat/test-crochet-extract.R | 18 ++- tests/testthat/test-crochet-replace.R | 182 +++++++++++++++++-------------- 13 files changed, 489 insertions(+), 237 deletions(-)
Title: R Commander Miscellaneous Functions
Description: Various statistical, graphics, and data-management functions used by the Rcmdr package in the R Commander GUI for R.
Author: John Fox [aut, cre],
Robert Muenchen [ctb],
Dan Putler [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between RcmdrMisc versions 1.0-6 dated 2017-08-28 and 1.0-7 dated 2018-01-03
DESCRIPTION | 16 +++--- MD5 | 8 +-- NAMESPACE | 74 +++++++++++++-------------- NEWS | 138 ++++++++++++++++++++++++++-------------------------- man/rcorr.adjust.Rd | 4 - 5 files changed, 122 insertions(+), 118 deletions(-)
Title: Bayesian Spectral Analysis Models using Gaussian Process Priors
Description: Contains functions to perform Bayesian inference
using a spectral analysis of Gaussian process priors.
Gaussian processes are represented with a Fourier series
based on cosine basis functions. Currently the package
includes parametric linear models, partial linear additive
models with/without shape restrictions, generalized linear
additive models with/without shape restrictions, and
density estimation model. To maximize computational
efficiency, the actual Markov chain Monte Carlo sampling
for each model is done using codes written in FORTRAN 90.
This software has been developed using funding supported by
Basic Science Research Program through the National Research
Foundation of Korea (NRF) funded by the Ministry of Education
(no. NRF-2016R1D1A1B03932178 and no. NRF-2017R1D1A3B03035235).
Author: Seongil Jo [aut, cre],
Taeryon Choi [aut],
Beomjo Park [aut, cre],
Peter J. Lenk [ctb]
Maintainer: Beomjo Park <beomjo@korea.ac.kr>
Diff between bsamGP versions 1.1.1 dated 2017-11-26 and 1.1.2 dated 2018-01-03
DESCRIPTION | 8 MD5 | 108 - R/bsad.R | 8 R/bsaq.R | 4 R/bsaqdpm.R | 5 R/bsar.R | 4 R/bsardpm.R | 7 R/fitted.bsad.R | 142 +- R/fitted.bsam.R | 186 +-- R/fitted.bsamdpm.R | 214 +-- R/gblr.R | 14 R/gbsar.R | 14 R/intsim.R | 26 R/predict.bsam.R | 528 ++++----- R/rald.R | 30 README.md | 65 - man/London.Mortality.Rd | 88 - man/bsad.Rd | 8 man/bsaq.Rd | 4 man/bsaqdpm.Rd | 5 man/bsar.Rd | 4 man/bsardpm.Rd | 4 man/fitted.blm.Rd | 52 man/fitted.bsad.Rd | 60 - man/fitted.bsam.Rd | 58 - man/fitted.bsamdpm.Rd | 58 - man/gblr.Rd | 4 man/gbsar.Rd | 4 man/plasma.Rd | 94 - man/plot.blm.Rd | 46 man/plot.bsad.Rd | 46 man/plot.bsam.Rd | 46 man/plot.fitted.bsad.Rd | 42 man/predict.bsam.Rd | 156 +- man/wage.union.Rd | 82 - src/bsad.f90 | 20 src/bsaqam.f90 | 1956 +++++++++++++++++----------------- src/bsaqamdpscale.f90 | 2210 +++++++++++++++++++-------------------- src/bsaram.f90 | 1904 +++++++++++++++++---------------- src/bsaramdplocationscale.f90 | 2364 +++++++++++++++++++++--------------------- src/bsaramdpscale.f90 | 2152 +++++++++++++++++++------------------- src/gblogitKS.f90 | 18 src/gblogitMH.f90 | 16 src/gbnegbinMH.f90 | 16 src/gbpoisMH.f90 | 16 src/gbpoisgammMH.f90 | 16 src/gbprobitAC.f90 | 20 src/gbsarlogitKS.f90 | 1738 +++++++++++++++--------------- src/gbsarlogitMH.f90 | 1814 ++++++++++++++++---------------- src/gbsarnegbinMH.f90 | 1900 +++++++++++++++++---------------- src/gbsarpoisMH.f90 | 1828 ++++++++++++++++---------------- src/gbsarpoisgammMH.f90 | 1964 +++++++++++++++++----------------- src/gbsarprobitAC.f90 | 1718 +++++++++++++++--------------- src/predictbsam.f90 | 376 +++--- src/predictgbsam.f90 | 262 ++-- 55 files changed, 12369 insertions(+), 12163 deletions(-)
Title: Extrema-Weighted Feature Extraction
Description: Extrema-weighted feature extraction for varying length functional data. Functional data analysis method that performs dimensionality reduction based on predefined features and allows for quantile weighting. Method implemented as presented in Van den Boom et al. (2017) <arXiv:1709.10467>.
Author: Willem van den Boom [aut, cre]
Maintainer: Willem van den Boom <willem@wvdboom.nl>
Diff between xwf versions 0.1-1 dated 2017-10-03 and 0.2-0 dated 2018-01-03
DESCRIPTION | 8 ++--- MD5 | 18 ++++++------ NAMESPACE | 1 R/XWFpValues.R | 26 ++++++++++++------ R/xwf.R | 13 ++++----- R/xwfGAM.R | 12 +++++++- R/xwfGridsearch.R | 72 +++++++++++++++++++++++++++++++++++---------------- man/XWFpValues.Rd | 16 +++++++---- man/xwf.Rd | 14 ++++++--- man/xwfGridsearch.Rd | 15 +++++++--- 10 files changed, 129 insertions(+), 66 deletions(-)
Title: Create Word Cloud by 'htmlwidget'
Description: A fast visualization tool for creating wordcloud
by using 'wordcloud2.js'. 'wordcloud2.js' is a JavaScript library to create
wordle presentation on 2D canvas or HTML <https://timdream.org/wordcloud2.js/>.
Author: Dawei Lang[aut, cre], Guan-tin Chien[aut, author for 'wordcloud2.js']
Maintainer: Dawei Lang <chiffonlang@icloud.com>
Diff between wordcloud2 versions 0.2.0 dated 2016-07-25 and 0.2.1 dated 2018-01-03
DESCRIPTION | 15 MD5 | 36 NAMESPACE | 4 R/plot-construction.R |only R/theme.R |only R/wordcloud2.R | 342 +- R/zzz.R | 6 build/vignette.rds |binary inst/doc/wordcloud.R | 108 inst/doc/wordcloud.html | 685 ++-- inst/htmlwidgets/lib/wordcloud2-0.0.1/hover.js | 296 -- inst/htmlwidgets/lib/wordcloud2-0.0.1/wordcloud2-all.js | 2298 ++++++++-------- inst/htmlwidgets/wordcloud2.js | 82 inst/htmlwidgets/wordcloud2.yaml | 16 man/WCtheme.Rd |only man/demoFreq.Rd | 2 man/demoFreqC.Rd | 2 man/letterCloud.Rd | 2 man/plus-.wordcloud2.Rd |only man/wordcloud2-shiny.Rd | 7 man/wordcloud2.Rd | 2 21 files changed, 1944 insertions(+), 1959 deletions(-)
Title: Finding Files in Project Subdirectories
Description: Robust, reliable and flexible paths to files below a
project root. The 'root' of a project is defined as a directory
that matches a certain criterion, e.g., it contains a certain
regular file.
Author: Kirill Müller [aut, cre]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between rprojroot versions 1.3-1 dated 2017-12-18 and 1.3-2 dated 2018-01-03
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ inst/doc/rprojroot.html | 20 ++++++++++---------- tests/testthat/test-thisfile.R | 7 +++++++ 5 files changed, 29 insertions(+), 17 deletions(-)
Title: R Commander Plug-in for University Level Applied Statistics
Description: An R Commander "plug-in" extending functionality of linear models
and providing an interface to Partial Least Squares Regression and Linear and
Quadratic Discriminant analysis. Several statistical summaries are extended,
predictions are offered for additional types of analyses, and extra plots, tests
and mixed models are available.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [aut]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between RcmdrPlugin.NMBU versions 1.8.7 dated 2016-10-12 and 1.8.8 dated 2018-01-03
DESCRIPTION | 16 ++++++++-------- MD5 | 10 +++++----- R/NMBU.GUI.Models.R | 40 ++++++++++++++++++++++++++++++++++++++++ R/NMBU.RcmdrPlugin.NMBU.R | 13 +------------ inst/etc/menus.txt | 1 + man/RcmdrPlugin.NMBU-package.Rd | 2 ++ 6 files changed, 57 insertions(+), 25 deletions(-)
More information about RcmdrPlugin.NMBU at CRAN
Permanent link
Title: Optimal Design and Statistical Power of Multilevel Randomized
Trials
Description: Calculate the optimal sample allocation that minimizes the variance of
treatment effect in multilevel randomized trials under fixed budget and cost structure,
perform power analyses with and without
accommodating costs and budget. The references for proposed methods are:
(1) Shen, Z., & Kelcey, B. (2018, April). Optimal design of cluster
randomized trials under condition- and unit-specific cost structures. Roundtable
discussion to be presented at American Educational Research Association (AERA)
annual conference; (2) Shen, Z., & Kelcey, B. (under review).
Optimal sample allocation under unequal costs in cluster-randomized trials.
Journal of Educational and Behavioral Statistics; (3) Shen, Z.(in progress).
Using optimal sample allocation to
improve design efficiency for multilevel randomized trials.
(Unpublished doctoral dissertation). University of Cincinnati, Cincinnati, OH.
Author: Zuchao Shen [aut, cre]
Maintainer: Zuchao Shen <shenzo@mail.uc.edu>
Diff between odr versions 0.3.2 dated 2017-09-17 and 0.7.3 dated 2018-01-03
DESCRIPTION | 30 ++++--- MD5 | 37 +++++--- NAMESPACE | 5 + R/od.2.R | 150 +++++++++++++++++++---------------- R/od.3.R |only R/od.4.R |only R/odr.R | 7 + R/power.2.R | 226 +++++++++++++++++++++++++++-------------------------- R/power.3.R |only R/power.4.R |only R/re.R |only build/vignette.rds |binary inst/NEWS.Rmd |only inst/doc/odr.R | 42 +++++++-- inst/doc/odr.Rmd | 95 +++++++++++++++------- inst/doc/odr.html | 142 +++++++++++++++++++++------------ man/od.2.Rd | 95 +++++++++++++--------- man/od.3.Rd |only man/od.4.Rd |only man/odr.Rd | 7 + man/power.2.Rd | 147 ++++++++++++++++++++-------------- man/power.3.Rd |only man/power.4.Rd |only man/re.Rd |only vignettes/odr.Rmd | 95 +++++++++++++++------- 25 files changed, 663 insertions(+), 415 deletions(-)
Title: Landscape and Range Expansion Simulation
Description: Tools to generate random landscape graphs, evaluate species
occurrence in dynamic landscapes, simulate future landscape occupation and
evaluate range expansion when new empty patches are available (e.g. as a
result of climate change).
Author: Frederico Mestre, Fernando Canovas, Benjamin Risk, Ricardo Pita,
Antonio Mira, Pedro Beja.
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>
Diff between MetaLandSim versions 1.0 dated 2017-12-21 and 1.0.1 dated 2018-01-03
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- inst/doc/landscape_simulation-knitr.R | 17 ++++------------- inst/doc/landscape_simulation-knitr.Rnw | 7 ------- inst/doc/landscape_simulation-knitr.pdf |binary inst/doc/parameter_estimation-knitr.R | 15 +++------------ inst/doc/parameter_estimation-knitr.Rnw | 7 ------- inst/doc/parameter_estimation-knitr.pdf |binary inst/doc/range_expansion-knitr.R | 13 ++----------- inst/doc/range_expansion-knitr.Rnw | 7 ------- inst/doc/range_expansion-knitr.pdf |binary man/MetaLandSim-package.Rd | 6 +++--- vignettes/landscape_simulation-knitr.Rnw | 7 ------- vignettes/parameter_estimation-knitr.Rnw | 7 ------- vignettes/range_expansion-knitr.Rnw | 7 ------- 15 files changed, 30 insertions(+), 99 deletions(-)
Title: Harrell Miscellaneous
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX and html code,
and recoding variables.
Author: Frank E Harrell Jr <f.harrell@vanderbilt.edu>, with
contributions from Charles Dupont and many others.
Maintainer: Frank E Harrell Jr <f.harrell@vanderbilt.edu>
Diff between Hmisc versions 4.1-0 dated 2017-12-19 and 4.1-1 dated 2018-01-03
DESCRIPTION | 8 +-- MD5 | 30 +++++------ NEWS | 5 + R/describe.s | 3 - R/summaryM.s | 3 + inst/tests/describe.Rmd | 12 ++++ man/describe.Rd | 15 +++-- src/hoeffd.f | 2 src/jacklins.f | 23 +++------ src/largrec.f | 4 - src/ratfor/hoeffd.r | 2 src/ratfor/jacklins.r | 16 +++--- src/ratfor/rcorr.r | 99 ++++++++++++++++++++------------------ src/ratfor/wclosest.r | 2 src/rcorr.f | 122 +++++++++++++++++++++++++----------------------- src/wclosest.f | 2 16 files changed, 187 insertions(+), 161 deletions(-)
Title: Modelling and Forecasting Biological Invasions
Description: Analysing and forecasting biological invasions time series
with a stochastic, non-mechanistic approach that gives proper weight
to the anthropic component, accounts for habitat suitability and
provides measures of precision for its estimates.
Author: Luca Butikofer [aut, cre],
Beatrix Jones [aut]
Maintainer: Luca Butikofer <lucabutikofer@gmail.com>
Diff between Biolinv versions 0.1-1 dated 2017-02-03 and 0.1-2 dated 2018-01-03
DESCRIPTION | 8 +- MD5 | 34 +++++----- NAMESPACE | 2 R/EM.R | 25 +++---- R/data_documentation.R | 40 +++++------- R/distances.R | 154 ++++++++++--------------------------------------- R/modSel.R | 2 R/simulacro.R | 6 - man/EM.Rd | 17 +++-- man/distances.Rd | 3 man/frogs.Rd | 6 + man/frogsEM.Rd | 5 - man/frogsJK.Rd | 7 -- man/frogsLacro.Rd | 7 -- man/frogsSum.Rd | 7 -- man/nzp.Rd | 8 +- man/nzw.Rd | 4 - man/simulacro.Rd | 6 - 18 files changed, 127 insertions(+), 214 deletions(-)
Title: Unicode Text Processing
Description: Process and print 'UTF-8' encoded international text (Unicode). Input, validate, normalize, encode, format, and display.
Author: Patrick O. Perry [aut, cph, cre],
Unicode, Inc. [cph, dtc] (Unicode Character Database)
Maintainer: Patrick O. Perry <pperry@stern.nyu.edu>
Diff between utf8 versions 1.1.2 dated 2017-12-14 and 1.1.3 dated 2018-01-03
DESCRIPTION | 12 +++++------ MD5 | 28 ++++++++++++------------- NEWS | 17 ++++++++++++++- R/output.R | 12 ++++++----- R/utf8_format.R | 13 +++++++++--- README.md | 4 +-- man/output.Rd | 12 +++++++++-- man/utf8_format.Rd | 7 +++--- src/bytes.c | 41 ++++++++++++++------------------------ src/init.c | 2 - src/rutf8.h | 18 ++++++++-------- src/string.c | 17 +++++++-------- src/text.c | 36 ++++++++++++++++----------------- src/utf8_format.c | 28 +++++++++++++++++-------- tests/testthat/test-utf8_format.R | 13 ++++++++++++ 15 files changed, 153 insertions(+), 107 deletions(-)
Title: Non-Parametric Trend Tests and Change-Point Detection
Description: The analysis of environmental data often requires
the detection of trends and change-points.
This package includes tests for trend detection
(Cox-Stuart Trend Test, Mann-Kendall Trend Test,
(correlated) Hirsch-Slack Test,
partial Mann-Kendall Trend Test, multivariate (multisite)
Mann-Kendall Trend Test, (Seasonal) Sen's slope,
partial Pearson and Spearman correlation trend test),
change-point detection (Lanzante's test procedures,
Pettitt's test, Buishand Range Test,
Buishand U Test, Standard Normal Homogeinity Test),
detection of non-randomness (Wallis-Moore Phase Frequency Test,
Bartels rank von Neumann's ratio test, Wald-Wolfowitz Test)
and the two sample Robust Rank-Order Distributional Test.
Author: Thorsten Pohlert
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between trend versions 1.0.1 dated 2017-11-12 and 1.1.0 dated 2018-01-03
DESCRIPTION | 15 ++++---- MD5 | 84 +++++++++++++++++++++++---------------------- NAMESPACE | 7 +++ R/PagesData.R | 2 - R/bartels.test.R | 9 +--- R/br.test.R | 8 +--- R/bu.test.R | 8 +--- R/cs.test.R | 2 - R/csmk.test.R | 2 - R/hcb.R | 2 - R/lanzante.test.R |only R/maxau.R | 2 - R/mk.test.R | 2 - R/mult.mk.test.R | 2 - R/partial.cor.trend.test.R | 2 - R/partial.mk.test.R | 2 - R/pettitt.test.R | 9 +--- R/plot.cptest.R | 2 - R/rrod.test.R |only R/sea.sens.slope.R | 2 - R/sens.slope.R | 2 - R/smk.test.R | 2 - R/snht.test.R | 8 +--- R/summary.smk.test.R | 2 - R/utilfn.R | 2 - R/wm.test.R | 4 +- R/ww.test.R | 2 - build/vignette.rds |binary inst/NEWS.Rd | 14 +++++++ inst/doc/trend.pdf |binary man/bartels.test.Rd | 10 ++--- man/br.test.Rd | 8 ++-- man/bu.test.Rd | 8 ++-- man/lanzante.test.Rd |only man/pettitt.test.Rd | 10 ++--- man/rrod.test.Rd |only man/snh.test.Rd | 8 ++-- man/wm.test.Rd | 2 - src/CToF90.c | 2 - src/getpval.f | 2 - src/init.c | 2 - src/mcbr.f | 2 - src/mcbu.f | 2 - src/mcsnht.f | 2 - src/trend.h | 2 - 45 files changed, 137 insertions(+), 121 deletions(-)
Title: Datasets for Spatial Analysis
Description: Diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis.
It includes R data of class sf (defined by the package 'sf'), Spatial (sp), and nb (spdep).
Unlike other spatial data packages such as 'rnaturalearth' and 'maps',
it also contains data stored in a range of file formats including GeoJSON, ESRI Shapefile and GeoPackage.
Some of the datasets are designed to illustrate specific analysis techniques.
cycle_hire and cycle_hire_osm, for example, is designed to illustrate point pattern analysis techniques.
Author: Roger Bivand [aut] (0000-0003-2392-6140),
Jakub Nowosad [aut, cre] (0000-0002-1057-3721),
Robin Lovelace [aut] (0000-0001-5679-6536)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between spData versions 0.2.6.8 dated 2017-12-17 and 0.2.6.9 dated 2018-01-03
DESCRIPTION | 10 +++++----- MD5 | 12 +++++++++--- R/elev.R |only R/grain.R |only README.md | 11 ++++++++--- data/datalist | 2 ++ data/elev.rda |only data/grain.rda |only man/elev.Rd |only man/grain.Rd |only 10 files changed, 24 insertions(+), 11 deletions(-)
Title: Improved Standard Evaluation Interfaces for Common Data
Manipulation Tasks
Description: The 'seplyr' (standard evaluation plying) package supplies improved
standard evaluation adapter methods for important common 'dplyr' data manipulation tasks.
In addition the 'seplyr' package supplies several new "key operations
bound together" methods. These include 'group_summarize()' (which
combines grouping, arranging and calculation in an atomic unit),
'add_group_summaries()' (which joins grouped summaries into a 'data.frame'
in a well documented manner), 'add_group_indices()' (which adds
per-group identifiers to a 'data.frame' without depending on row-order),
'partition_mutate_qt()' (which optimizes mutate sequences), and 'if_else_device()'
(which simulates per-row if-else blocks in expression sequences).
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between seplyr versions 0.5.0 dated 2017-11-25 and 0.5.1 dated 2018-01-03
seplyr-0.5.0/seplyr/inst/doc/StringAlgebra.R |only seplyr-0.5.0/seplyr/inst/doc/StringAlgebra.Rmd |only seplyr-0.5.0/seplyr/inst/doc/StringAlgebra.html |only seplyr-0.5.0/seplyr/inst/doc/mutate.R |only seplyr-0.5.0/seplyr/inst/doc/mutate.Rmd |only seplyr-0.5.0/seplyr/inst/doc/mutate.html |only seplyr-0.5.0/seplyr/vignettes/StringAlgebra.Rmd |only seplyr-0.5.0/seplyr/vignettes/mutate.Rmd |only seplyr-0.5.1/seplyr/DESCRIPTION | 21 +-- seplyr-0.5.1/seplyr/MD5 | 102 ++++++++--------- seplyr-0.5.1/seplyr/NEWS.md | 9 + seplyr-0.5.1/seplyr/R/add_group_indices.R | 3 seplyr-0.5.1/seplyr/R/add_group_summaries.R | 3 seplyr-0.5.1/seplyr/R/add_rank_indices.R | 3 seplyr-0.5.1/seplyr/R/arrange_se.R | 5 seplyr-0.5.1/seplyr/R/distinct_se.R | 3 seplyr-0.5.1/seplyr/R/filter_nse.R | 23 +-- seplyr-0.5.1/seplyr/R/filter_se.R | 7 - seplyr-0.5.1/seplyr/R/group_by_se.R | 3 seplyr-0.5.1/seplyr/R/group_indices_se.R | 3 seplyr-0.5.1/seplyr/R/group_summarize.R | 3 seplyr-0.5.1/seplyr/R/in_group_indices.R | 3 seplyr-0.5.1/seplyr/R/mutate_nse.R | 44 +++---- seplyr-0.5.1/seplyr/R/mutate_se.R | 43 ++++--- seplyr-0.5.1/seplyr/R/rename_se.R | 3 seplyr-0.5.1/seplyr/R/select_se.R | 6 + seplyr-0.5.1/seplyr/R/stmtPlanner.R | 41 ++++--- seplyr-0.5.1/seplyr/R/stringAlgebra.R | 32 ----- seplyr-0.5.1/seplyr/R/summarize_nse.R | 23 +-- seplyr-0.5.1/seplyr/R/summarize_se.R | 7 - seplyr-0.5.1/seplyr/R/tally.R | 12 ++ seplyr-0.5.1/seplyr/R/transmute_nse.R | 26 +--- seplyr-0.5.1/seplyr/R/transmute_se.R | 7 - seplyr-0.5.1/seplyr/README.md | 2 seplyr-0.5.1/seplyr/build/vignette.rds |binary seplyr-0.5.1/seplyr/inst/doc/MutatePartitioner.R | 7 - seplyr-0.5.1/seplyr/inst/doc/MutatePartitioner.Rmd | 13 -- seplyr-0.5.1/seplyr/inst/doc/MutatePartitioner.html | 15 -- seplyr-0.5.1/seplyr/inst/doc/named_map_builder.html | 24 ++-- seplyr-0.5.1/seplyr/inst/doc/rename_se.html | 4 seplyr-0.5.1/seplyr/inst/doc/seplyr.html | 24 ++-- seplyr-0.5.1/seplyr/inst/doc/using_seplyr.html | 116 ++++++++++---------- seplyr-0.5.1/seplyr/man/expand_expr.Rd | 15 -- seplyr-0.5.1/seplyr/man/filter_nse.Rd | 16 -- seplyr-0.5.1/seplyr/man/filter_se.Rd | 4 seplyr-0.5.1/seplyr/man/if_else_device.Rd | 11 + seplyr-0.5.1/seplyr/man/mutate_nse.Rd | 28 +--- seplyr-0.5.1/seplyr/man/mutate_se.Rd | 11 + seplyr-0.5.1/seplyr/man/partition_mutate_qt.Rd | 6 - seplyr-0.5.1/seplyr/man/partition_mutate_se.Rd | 6 - seplyr-0.5.1/seplyr/man/prep_deref.Rd | 20 --- seplyr-0.5.1/seplyr/man/summarize_nse.Rd | 19 --- seplyr-0.5.1/seplyr/man/summarize_se.Rd | 4 seplyr-0.5.1/seplyr/man/transmute_nse.Rd | 21 --- seplyr-0.5.1/seplyr/man/transmute_se.Rd | 4 seplyr-0.5.1/seplyr/vignettes/MutatePartitioner.Rmd | 13 -- 56 files changed, 375 insertions(+), 443 deletions(-)
Title: High-Dimensional Variable Selection with Presence-Only Data
Description: Efficient algorithm for solving PU (Positive and Unlabelled) problem in low or high dimensional setting with lasso or group lasso penalty. The algorithm uses Maximization-Minorization and (block) coordinate descent. Sparse calculation and parallel computing via 'OpenMP' are supported for the computational speed-up. See Hyebin Song, Garvesh Raskutti (2017) <arXiv:1711.08129>.
Author: Hyebin Song [aut, cre],
Garvesh Raskutti [aut]
Maintainer: Hyebin Song <hsong56@wisc.edu>
Diff between PUlasso versions 1.2 dated 2017-12-13 and 2.1 dated 2018-01-03
DESCRIPTION | 10 - MD5 | 30 +-- R/RcppExports.R | 28 ++- R/cv.grpPUlasso.R | 35 ++-- R/deviances.R | 58 ++++--- R/grpPUlasso.R | 56 +++--- inst/doc/PUlasso-vignette.html | 28 +-- src/LUfit.cpp | 9 - src/LUfit.h | 177 ++++++++++----------- src/RcppExports.cpp | 128 ++++++++++++--- src/cppWrappers.cpp | 338 +++++++++++++++++++++-------------------- src/cv_LUfit.cpp | 67 -------- src/cv_LUfit.h | 21 -- src/groupLasso.cpp | 234 +++++++--------------------- src/groupLasso.h | 164 +++++++++---------- tests/testthat/test.R | 24 +- 16 files changed, 693 insertions(+), 714 deletions(-)
Title: Blinder-Oaxaca Decomposition
Description: An implementation of the Blinder-Oaxaca decomposition for linear regression models.
Author: Marek Hlavac <mhlavac@alumni.princeton.edu>
Maintainer: Marek Hlavac <mhlavac@alumni.princeton.edu>
Diff between oaxaca versions 0.1.3 dated 2016-01-25 and 0.1.4 dated 2018-01-03
DESCRIPTION | 12 MD5 | 24 - R/oaxaca-internal.R | 37 - R/oaxaca.R | 8 build/vignette.rds |binary inst/CITATION | 12 inst/ChangeLog | 8 inst/doc/oaxaca.Rtex | 994 +++++++++++++++++++++++++------------------------- inst/doc/oaxaca.pdf |binary man/oaxaca.Rd | 15 man/plot.oaxaca.Rd | 15 vignettes/oaxaca.Rtex | 994 +++++++++++++++++++++++++------------------------- vignettes/oaxaca.bib | 676 +++++++++++++++++----------------- 13 files changed, 1408 insertions(+), 1387 deletions(-)
Title: Mixed Model ANOVA and Statistics for Education
Description: The main functions perform mixed models analysis by least squares
or REML by adding the function r() to formulas of lm() and glm(). A collection of
text-book statistics for higher education is also included, e.g. modifications
of the functions lm(), glm() and associated summaries from the package 'stats'.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [ctb],
R-Core [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between mixlm versions 1.2.2 dated 2017-11-12 and 1.2.3 dated 2018-01-03
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/statistics.R | 20 ++++++++++++++++---- 3 files changed, 22 insertions(+), 10 deletions(-)
Title: Multi-Category Classification Accuracy
Description: It contains six common multi-category classification accuracy evaluation measures:
Hypervolume Under Manifold (HUM), described in
Li and Fine (2008) <doi:10.1093/biostatistics/kxm050>.
Correct Classification Percentage (CCP), Integrated Discrimination Improvement (IDI), Net Reclassification Improvement (NRI), R-Squared Value (RSQ), described in
Li, Jiang and Fine (2013) <doi:10.1093/biostatistics/kxs047>.
Polytomous Discrimination Index (PDI), described in
Van Calster et al. (2012) <doi:10.1007/s10654-012-9733-3>.
Li et al. (2018) <doi:10.1177/0962280217692830>.
Author: Ming Gao, Jialiang Li
Maintainer: Ming Gao <gaoming96@sjtu.edu.cn>
Diff between mcca versions 0.1.0 dated 2017-11-20 and 0.2.0 dated 2018-01-03
DESCRIPTION | 29 +++--- MD5 | 33 ++++--- NAMESPACE | 1 R/ccp.R | 94 ++++++++++++++++++++-- R/ccr.R |only R/hum.R | 96 +++++++++++++++++++--- R/idi.R | 166 ++++++++++++++++++++++++++++++--------- R/nri.R | 94 ++++++++++++++++++---- R/pdi.R | 90 +++++++++++++++++++-- R/pm.R |only R/rsq.R | 220 +++++++++++++++++++++++++++++++++------------------- man/ccp.Rd | 33 ++++--- man/ccr.Rd |only man/hum.Rd | 33 ++++--- man/idi.Rd | 27 +++--- man/mcca-package.Rd |only man/nri.Rd | 29 ++++-- man/pdi.Rd | 33 ++----- man/pm.Rd |only man/rsq.Rd | 35 ++++---- 20 files changed, 739 insertions(+), 274 deletions(-)
Title: Utility Functions for Statistical Analysis Report Generation and
Monte Carlo Studies
Description: Helper functions for creating formatted summary of regression models, writing publication-ready tables to latex files, and running Monte Carlo experiments.
Author: Youyi Fong [cre],
Krisztian Sebestyen [aut],
Jason Becker [ctb],
Bendix Carstensen [ctb],
Daryl Morris [ctb],
Josh Pasek [ctb],
Dennis Chao [ctb]
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between kyotil versions 2017.10-31 dated 2017-11-03 and 2017.12-27 dated 2018-01-03
DESCRIPTION | 24 ++++++++++----- MD5 | 29 ++++++++++-------- NAMESPACE | 4 +- R/DMHeatMap.R |only R/base.R | 9 +++-- R/misc.R | 4 ++ R/plotting.R | 11 +++--- R/print.R | 65 ++++++++++++++--------------------------- R/regression.model.functions.R | 6 ++- inst/CITATION |only man/DMHeatMap.Rd |only man/VEplot.Rd | 2 - man/base.Rd | 9 +++++ man/misc.Rd | 3 + man/plotting.Rd | 4 +- man/print.Rd | 47 +++++++++++++++++++++++------ tests/doRUnit.R | 2 - 17 files changed, 129 insertions(+), 90 deletions(-)
Title: Incidence Estimation Tools
Description: Tools for estimating incidence from biomarker data in cross-
sectional surveys, and for calibrating tests for recent infection.
Implements and extends the method of Kassanjee et al. (2012)
<doi:10.1097/EDE.0b013e3182576c07>.
Author: Alex Welte [aut],
Eduard Grebe [cre, aut],
Avery McIntosh [aut],
Petra Bäumler [aut],
Reshma Kassanjee [ctb],
Hilmarie Brand [ctb],
Cari Van Schalkwyk [ctb],
Yuruo Li [ctb],
Simon Daniel [ctb],
Stefano Ongarello [aut],
Yusuke Asai [ctb],
Jeffrey Eaton [ctb]
Maintainer: Eduard Grebe <eduardgrebe@sun.ac.za>
Diff between inctools versions 1.0.10 dated 2017-04-13 and 1.0.11 dated 2018-01-03
DESCRIPTION | 18 MD5 | 38 - NAMESPACE | 10 R/calibration_mdri.R | 13 R/incidence.R | 21 build/vignette.rds |binary inst/doc/EstimatingIncidence.Rmd | 2 inst/doc/EstimatingIncidence.html | 348 ++++++++++++--- inst/doc/Introduction.Rmd | 2 inst/doc/Introduction.html | 318 ++++++++++---- inst/doc/SurveyDesign.Rmd | 2 inst/doc/SurveyDesign.html | 338 ++++++++++++--- inst/doc/TestCalibration.R | 55 +- inst/doc/TestCalibration.Rmd | 64 +- inst/doc/TestCalibration.html | 838 ++++++++++++++------------------------ man/mdrical.Rd | 4 vignettes/EstimatingIncidence.Rmd | 2 vignettes/Introduction.Rmd | 2 vignettes/SurveyDesign.Rmd | 2 vignettes/TestCalibration.Rmd | 64 +- 20 files changed, 1293 insertions(+), 848 deletions(-)
Title: Convenient Functions for Ensemble Time Series Forecasts
Description: Convenient functions for ensemble forecasts in R combining
approaches from the 'forecast' package. Forecasts generated from auto.arima(), ets(),
thetam(), nnetar(), stlm(), and tbats() can be combined with equal weights, weights
based on in-sample errors, or CV weights. Cross validation for time series data
and user-supplied models and forecasting functions is also supported to evaluate model accuracy.
Author: David Shaub [aut, cre],
Peter Ellis [aut]
Maintainer: David Shaub <davidshaub@gmx.com>
Diff between forecastHybrid versions 1.1.9 dated 2017-08-23 and 2.0.10 dated 2018-01-03
DESCRIPTION | 10 MD5 | 34 +-- NAMESPACE | 4 R/cvts.R | 93 ++++---- R/hybridModel.R | 8 R/theta.R | 3 inst/NEWS.md | 10 inst/doc/forecastHybrid.R | 153 ++++++++++++++ inst/doc/forecastHybrid.Rmd | 106 ++++++++-- inst/doc/forecastHybrid.html | 300 ++++++++++++++++++----------- man/cvts.Rd | 45 +--- man/extractForecasts.Rd | 9 man/tsPartition.Rd | 3 tests/testthat/test-cvts.R | 54 +++-- tests/testthat/test-forecast.hybridModel.R | 21 +- tests/testthat/test-hybridModel.R | 37 ++- tests/testthat/test-levels.R | 2 vignettes/forecastHybrid.Rmd | 104 +++++++--- 18 files changed, 702 insertions(+), 294 deletions(-)
More information about forecastHybrid at CRAN
Permanent link
Title: Extreme Bounds Analysis (EBA)
Description: An implementation of Extreme Bounds Analysis (EBA), a global sensitivity analysis that examines the robustness of determinants in regression models. The package supports both Leamer's and Sala-i-Martin's versions of EBA, and allows users to customize all aspects of the analysis.
Author: Marek Hlavac <mhlavac@alumni.princeton.edu>
Maintainer: Marek Hlavac <mhlavac@alumni.princeton.edu>
Diff between ExtremeBounds versions 0.1.5.2 dated 2016-08-26 and 0.1.6 dated 2018-01-03
DESCRIPTION | 12 MD5 | 26 - R/ExtremeBounds-internal.R | 131 +++-- build/vignette.rds |binary inst/CITATION | 2 inst/ChangeLog | 6 inst/doc/ExtremeBounds.Rtex | 878 ++++++++++++++++++------------------ inst/doc/ExtremeBounds.pdf |binary man/ExtremeBounds.Rd | 5 man/eba.Rd | 8 man/hist.eba.Rd | 5 man/print.eba.Rd | 5 vignettes/ExtremeBounds.Rtex | 878 ++++++++++++++++++------------------ vignettes/ExtremeBounds.bib | 1036 +++++++++++++++++++++---------------------- 14 files changed, 1515 insertions(+), 1477 deletions(-)
Title: Represent Ordered Lists and Pairs as Strings
Description: Interconverts between ordered lists and compact string notation.
Useful for capturing code lists, and pair-wise codes and decodes, for text storage.
Analogous to factor levels and labels. Generics encode() and decode()
perform interconversion, while codes() and decodes() extract components of an encoding.
The function encoded() checks whether something is interpretable as an encoding.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between encode versions 0.3.2 dated 2017-11-30 and 0.3.3 dated 2018-01-03
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/encode.R | 2 +- man/encode.Rd | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Distributed-Lag Linear Structural Equation Models
Description: Inference functionalities for distributed-lag linear structural equation models (DLSEMs). DLSEMs are an extension of linear structural causal models (Pearl, 2000, Chapter 5) <ISBN:978-0-521-89560-6>, where each factor of the joint probability distribution is a distributed-lag linear regression with constrained lag shapes (Judge et al., 1985, Chapters 9-10) <ISBN: 978-0-471-89530-5>. Endpoint-constrained quadratic, quadratic decreasing and gamma lag shapes are available.
Author: Alessandro Magrini
Maintainer: Alessandro Magrini <magrini@disia.unifi.it>
Diff between dlsem versions 2.0 dated 2017-12-05 and 2.1 dated 2018-01-03
dlsem-2.0/dlsem/man/edgeCoeff.Rd |only dlsem-2.0/dlsem/man/modelFit.Rd |only dlsem-2.0/dlsem/vignettes/figures/lagsh1.pdf |only dlsem-2.0/dlsem/vignettes/figures/lagsh2.pdf |only dlsem-2.0/dlsem/vignettes/figures/lagsh3.pdf |only dlsem-2.1/dlsem/DESCRIPTION | 12 dlsem-2.1/dlsem/MD5 | 34 - dlsem-2.1/dlsem/NAMESPACE | 15 dlsem-2.1/dlsem/R/dlsem.r | 552 +++++++++++++++--------- dlsem-2.1/dlsem/build/vignette.rds |binary dlsem-2.1/dlsem/data/agres.rda |binary dlsem-2.1/dlsem/inst/doc/dlsem_vignette.R | 99 ++-- dlsem-2.1/dlsem/inst/doc/dlsem_vignette.Rnw | 586 +++++++++++++++----------- dlsem-2.1/dlsem/inst/doc/dlsem_vignette.pdf |binary dlsem-2.1/dlsem/man/agres.Rd | 15 dlsem-2.1/dlsem/man/causalEff.Rd | 19 dlsem-2.1/dlsem/man/dlsem-package.Rd | 15 dlsem-2.1/dlsem/man/dlsem.Rd | 248 +++++++---- dlsem-2.1/dlsem/vignettes/dlsem_vignette.Rnw | 586 +++++++++++++++----------- dlsem-2.1/dlsem/vignettes/figures/lagsh1a.pdf |only dlsem-2.1/dlsem/vignettes/figures/lagsh1b.pdf |only dlsem-2.1/dlsem/vignettes/figures/lagsh1c.pdf |only 22 files changed, 1327 insertions(+), 854 deletions(-)
Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to work with
remote database tables as if they are in-memory data frames. Basic features
works with any database that has a 'DBI' back end; more advanced features
require 'SQL' translation to be provided by the package author.
Author: Hadley Wickham [aut, cre],
Edgar Ruiz [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dbplyr versions 1.1.0 dated 2017-06-27 and 1.2.0 dated 2018-01-03
dbplyr-1.1.0/dbplyr/R/db-odbc-postgres.R |only dbplyr-1.1.0/dbplyr/tests/testthat/output |only dbplyr-1.2.0/dbplyr/DESCRIPTION | 57 - dbplyr-1.2.0/dbplyr/MD5 | 194 +-- dbplyr-1.2.0/dbplyr/NAMESPACE | 45 dbplyr-1.2.0/dbplyr/NEWS.md | 114 ++ dbplyr-1.2.0/dbplyr/R/db-compute.R | 7 dbplyr-1.2.0/dbplyr/R/db-mysql.r | 49 dbplyr-1.2.0/dbplyr/R/db-odbc-access.R |only dbplyr-1.2.0/dbplyr/R/db-odbc-hive.R | 16 dbplyr-1.2.0/dbplyr/R/db-odbc-impala.R | 2 dbplyr-1.2.0/dbplyr/R/db-odbc-mssql.R | 167 ++- dbplyr-1.2.0/dbplyr/R/db-odbc-oracle.R | 35 dbplyr-1.2.0/dbplyr/R/db-odbc-redshift.R |only dbplyr-1.2.0/dbplyr/R/db-odbc-teradata.R |only dbplyr-1.2.0/dbplyr/R/db-postgres.r | 139 +- dbplyr-1.2.0/dbplyr/R/db-roracle.R |only dbplyr-1.2.0/dbplyr/R/db-sqlite.r | 11 dbplyr-1.2.0/dbplyr/R/dbi-s3.r | 21 dbplyr-1.2.0/dbplyr/R/explain.r | 4 dbplyr-1.2.0/dbplyr/R/ident.R | 35 dbplyr-1.2.0/dbplyr/R/lazy-ops.R | 4 dbplyr-1.2.0/dbplyr/R/remote.R |only dbplyr-1.2.0/dbplyr/R/schema.R | 2 dbplyr-1.2.0/dbplyr/R/simulate.r | 7 dbplyr-1.2.0/dbplyr/R/sql-build.R | 28 dbplyr-1.2.0/dbplyr/R/sql-escape.r | 26 dbplyr-1.2.0/dbplyr/R/sql-expr.R |only dbplyr-1.2.0/dbplyr/R/sql-generic.R | 31 dbplyr-1.2.0/dbplyr/R/sql-optimise.R | 20 dbplyr-1.2.0/dbplyr/R/sql-query.R | 20 dbplyr-1.2.0/dbplyr/R/sql.R | 24 dbplyr-1.2.0/dbplyr/R/src-sql.r | 2 dbplyr-1.2.0/dbplyr/R/src_dbi.R | 15 dbplyr-1.2.0/dbplyr/R/tbl-lazy.R | 38 dbplyr-1.2.0/dbplyr/R/tbl-sql.r | 60 - dbplyr-1.2.0/dbplyr/R/test-frame.R | 13 dbplyr-1.2.0/dbplyr/R/translate-sql-base.r | 81 + dbplyr-1.2.0/dbplyr/R/translate-sql-helpers.r | 98 + dbplyr-1.2.0/dbplyr/R/translate-sql-odbc.R | 30 dbplyr-1.2.0/dbplyr/R/translate-sql-paste.R |only dbplyr-1.2.0/dbplyr/R/translate-sql-window.r | 43 dbplyr-1.2.0/dbplyr/R/translate-sql.r | 23 dbplyr-1.2.0/dbplyr/R/utils.r | 15 dbplyr-1.2.0/dbplyr/R/zzz.R | 7 dbplyr-1.2.0/dbplyr/README.md | 11 dbplyr-1.2.0/dbplyr/build/vignette.rds |binary dbplyr-1.2.0/dbplyr/inst/doc/dbplyr.Rmd | 10 dbplyr-1.2.0/dbplyr/inst/doc/dbplyr.html | 532 ++++++---- dbplyr-1.2.0/dbplyr/inst/doc/new-backend.Rmd | 10 dbplyr-1.2.0/dbplyr/inst/doc/new-backend.html | 329 ++++-- dbplyr-1.2.0/dbplyr/inst/doc/sql-translation.html | 456 ++++++-- dbplyr-1.2.0/dbplyr/man/copy_to.src_sql.Rd | 8 dbplyr-1.2.0/dbplyr/man/db_copy_to.Rd | 2 dbplyr-1.2.0/dbplyr/man/dbplyr-package.Rd | 5 dbplyr-1.2.0/dbplyr/man/ident.Rd | 11 dbplyr-1.2.0/dbplyr/man/in_schema.Rd | 2 dbplyr-1.2.0/dbplyr/man/join.tbl_sql.Rd | 2 dbplyr-1.2.0/dbplyr/man/memdb_frame.Rd | 4 dbplyr-1.2.0/dbplyr/man/remote_name.Rd |only dbplyr-1.2.0/dbplyr/man/sql_expr.Rd |only dbplyr-1.2.0/dbplyr/man/sql_variant.Rd | 44 dbplyr-1.2.0/dbplyr/man/src_dbi.Rd | 7 dbplyr-1.2.0/dbplyr/man/tbl_lazy.Rd | 6 dbplyr-1.2.0/dbplyr/man/testing.Rd | 3 dbplyr-1.2.0/dbplyr/man/translate_sql.Rd | 4 dbplyr-1.2.0/dbplyr/man/win_over.Rd | 8 dbplyr-1.2.0/dbplyr/tests/testthat/helper-src.R | 21 dbplyr-1.2.0/dbplyr/tests/testthat/test-compute.R | 2 dbplyr-1.2.0/dbplyr/tests/testthat/test-filter.r | 2 dbplyr-1.2.0/dbplyr/tests/testthat/test-group-size.R | 7 dbplyr-1.2.0/dbplyr/tests/testthat/test-ident.R | 5 dbplyr-1.2.0/dbplyr/tests/testthat/test-joins-consistent.R | 12 dbplyr-1.2.0/dbplyr/tests/testthat/test-joins.R | 5 dbplyr-1.2.0/dbplyr/tests/testthat/test-lazy-ops.R | 7 dbplyr-1.2.0/dbplyr/tests/testthat/test-mutate.r | 38 dbplyr-1.2.0/dbplyr/tests/testthat/test-output.R | 65 - dbplyr-1.2.0/dbplyr/tests/testthat/test-remote.R |only dbplyr-1.2.0/dbplyr/tests/testthat/test-schema.R | 3 dbplyr-1.2.0/dbplyr/tests/testthat/test-select.r | 8 dbplyr-1.2.0/dbplyr/tests/testthat/test-sets.R | 4 dbplyr-1.2.0/dbplyr/tests/testthat/test-sql-build.R | 2 dbplyr-1.2.0/dbplyr/tests/testthat/test-sql-escape.r | 58 + dbplyr-1.2.0/dbplyr/tests/testthat/test-sql-expr.R |only dbplyr-1.2.0/dbplyr/tests/testthat/test-sql-optimise.R | 2 dbplyr-1.2.0/dbplyr/tests/testthat/test-sql-query.R |only dbplyr-1.2.0/dbplyr/tests/testthat/test-summarise.r | 9 dbplyr-1.2.0/dbplyr/tests/testthat/test-tbl-sql.r | 31 dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-MySQL.R | 9 dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-access.r |only dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-hive.R | 17 dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-impala.R | 22 dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-math.R | 16 dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-mssql.r | 230 ++-- dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-odbc.R | 199 --- dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-oracle.R | 52 dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-postgresql.R | 73 - dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-sql-helpers.r |only dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-sql-paste.R |only dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-sql-window.r |only dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-sqlite.R |only dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-teradata.r |only dbplyr-1.2.0/dbplyr/tests/testthat/test-translate-window.R | 6 dbplyr-1.2.0/dbplyr/tests/testthat/test-translate.r | 59 - dbplyr-1.2.0/dbplyr/vignettes/dbplyr.Rmd | 10 dbplyr-1.2.0/dbplyr/vignettes/new-backend.Rmd | 10 106 files changed, 2641 insertions(+), 1280 deletions(-)
Title: Read and Write CSV Files with Selected Conventions
Description: Reads and writes CSV with selected conventions.
Uses the same generic function for reading and writing to promote consistent formats.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between csv versions 0.5 dated 2017-07-10 and 0.5.1 dated 2018-01-03
DESCRIPTION | 6 +-- MD5 | 16 +++++--- NAMESPACE | 4 ++ R/csv.R | 86 +++++++++++++++++++++++++++++++++++++++++---- man/as.csv.Rd | 2 - man/as.csv.character.Rd | 4 +- man/as.csv.data.frame.Rd | 17 ++++++++ man/autoquote.Rd |only man/autoquote.character.Rd |only man/autoquote.default.Rd |only man/autoquote.factor.Rd |only 11 files changed, 117 insertions(+), 18 deletions(-)
Title: Process Biogas Data and Predict Biogas Production
Description: High- and low-level functions for processing biogas data and predicting biogas production. Molar mass and calculated oxygen demand (COD') can be determined from a chemical formula. Measured gas volume can be corrected for water vapor and to (possibly user-defined) standard temperature and pressure. Gas quantity can be converted between volume, mass, and moles. Gas composition, cumulative production, or other variables can be interpolated to a specified time. Cumulative biogas and methane production (and rates) can be calculated using volumetric, manometric, or gravimetric methods for any number of reactors. With cumulative methane production data and data on reactor contents, biochemical methane potential (BMP) can be calculated and summarized, including subtraction of the inoculum contribution and normalization by substrate mass. Cumulative production and production rates can be summarized in several different ways (e.g., omitting normalization) using the same function. Lastly, biogas quantity and composition can be predicted from substrate composition and additional, optional data.
Author: Sasha D. Hafner [aut, cre], Charlotte Rennuit [aut], Jin Mi Triolo [ctb], Ali Heidarzadeh Vazifehkhoran [ctb]
Maintainer: Sasha D. Hafner <sasha.hafner@eng.au.dk>
Diff between biogas versions 1.8.1 dated 2017-08-12 and 1.9.0 dated 2018-01-03
ChangeLog | 89 +++ DESCRIPTION | 8 MD5 | 78 +-- NEWS | 36 + R/checkArgClassValue.R | 2 R/constants.R | 8 R/cumBg.R | 4 R/predBg.R | 2 R/stdVol.R | 15 R/summBg.R | 925 ++++++++++++++++++++------------------- R/unitConvert.R | 29 - build/vignette.rds |binary data/comp.rda |binary data/comp2.rda |binary data/mass.rda |binary data/massw.rda |binary data/s3compl.rda |binary data/s3compw.rda |binary data/s3lcombo.rda |binary data/s3voll.rda |binary data/s3volw.rda |binary data/setup.rda |binary data/setup2.rda |binary data/strawComp.rda |binary data/strawMass.rda |binary data/strawPressure.rda |binary data/strawSetup.rda |binary data/vol.rda |binary data/vol2.rda |binary inst/doc/biogas_quick_start.R | 2 inst/doc/biogas_quick_start.Rnw | 75 +-- inst/doc/biogas_quick_start.pdf |binary inst/doc/predBg_function.Rnw | 124 ++--- inst/doc/predBg_function.pdf |binary man/cumBg.Rd | 8 man/predBg.Rd | 3 man/stdVol.Rd | 4 man/summBg.Rd | 26 - vignettes/biogas_quick_start.Rnw | 75 +-- vignettes/predBg_function.Rnw | 124 ++--- 40 files changed, 903 insertions(+), 734 deletions(-)
Title: Biochemically Intuitive Generalized Loewe Model
Description: Response surface methods for drug synergy analysis. Available
methods include generalized and classical Loewe formulations as well as Highest
Single Agent methodology. Response surfaces can be plotted in an interactive
3-D plot and formal statistical tests for presence of synergistic effects are
available. Implemented methods and tests are described in the article
"BIGL: Biochemically Intuitive Generalized Loewe null model for prediction
of the expected combined effect compatible with partial agonism and antagonism"
by Koen Van der Borght, Annelies Tourny, Rytis Bagdziunas, Olivier Thas,
Maxim Nazarov, Heather Turner, Bie Verbist & Hugo Ceulemans (2017)
<doi:10.1038/s41598-017-18068-5>.
Author: Heather Turner, Annelies Tourny, Olivier Thas, Maxim Nazarov, Rytis Bagdziunas
Maintainer: Maxim Nazarov <maxim.nazarov@openanalytics.eu>
Diff between BIGL versions 1.1.0 dated 2017-09-25 and 1.1.1 dated 2018-01-03
DESCRIPTION | 19 MD5 | 16 build/vignette.rds |binary inst/NEWS | 3 inst/doc/analysis.html | 5448 +++++++++++++++++++++++++++++++++++++++--- inst/doc/methodology.Rmd | 2 inst/doc/methodology.html | 276 +- tests/testthat/test_wrapper.R | 12 vignettes/methodology.Rmd | 2 9 files changed, 5329 insertions(+), 449 deletions(-)
Title: Hierarchical Models for Parametric and Semi-Parametric Analyses
of Semi-Competing Risks Data
Description: Hierarchical multistate models are considered to perform the analysis of independent/clustered semi-competing risks data. The package allows to choose the specification for model components from a range of options giving users substantial flexibility, including: accelerated failure time or proportional hazards regression models; parametric or non-parametric specifications for baseline survival functions and cluster-specific random effects distribution; a Markov or semi-Markov specification for terminal event following non-terminal event. While estimation is mainly performed within the Bayesian paradigm, the package also provides the maximum likelihood estimation approach for several para- metric models. The package also includes functions for univariate survival analysis as complementary analysis tools.
Author: Kyu Ha Lee, Catherine Lee, Danilo Alvares, and Sebastien Haneuse
Maintainer: Kyu Ha Lee <klee@hsph.harvard.edu>
Diff between SemiCompRisks versions 2.7 dated 2017-06-28 and 2.8 dated 2018-01-03
DESCRIPTION | 14 +++++++------- MD5 | 38 +++++++++++++++++++++----------------- R/BayesID_HReg.R | 3 ++- R/BayesSurv_HReg.R | 3 ++- R/FreqID_HReg.R | 8 ++++---- R/FreqSurv_HReg.R | 4 ++-- R/methods.R | 38 +++++++++++++++++++------------------- build/vignette.rds |binary data/CIBMTR.rda |only data/CIBMTR_Params.rda |only inst/doc/SemiCompRisks.ltx | 4 +--- inst/doc/SemiCompRisks.pdf |binary man/BMT.Rd | 12 ++++++------ man/BayesID_AFT.Rd | 4 ++-- man/BayesID_HReg.Rd | 6 +++--- man/BayesSurv_AFT.Rd | 2 +- man/BayesSurv_HReg.Rd | 6 +++--- man/CIBMTR.Rd |only man/CIBMTR_Params.Rd |only man/SemiCompRisks-package.Rd | 8 ++++---- man/initiate.startValues_AFT.Rd | 2 +- vignettes/SemiCompRisks.ltx | 4 +--- 22 files changed, 79 insertions(+), 77 deletions(-)
Title: Shiny Apps for Plotting and Exploratory Analysis
Description: Contains Shiny apps for Plotting and Exploratory Analysis.
The plotting app provides an automated interface for generating plots using the 'ggplot2' package.
Current version of this app supports 10 different plot types along with options to manipulate specific
aesthetics and controls related to each plot type. Exploratory Analysis app helps generates an Exploratory
analysis report (in PowerPoint format) comprising of Univariate and Bivariate plots & related summary tables.
Author: Anup Nair [aut, cre]
Maintainer: Anup Nair <nairanup50695@gmail.com>
Diff between RtutoR versions 1.0 dated 2017-12-18 and 1.1 dated 2018-01-03
RtutoR-1.0/RtutoR/R/tutorial_markdown |only RtutoR-1.1/RtutoR/DESCRIPTION | 15 RtutoR-1.1/RtutoR/MD5 | 13 RtutoR-1.1/RtutoR/R/gen_report_app.R | 87 ++- RtutoR-1.1/RtutoR/R/generate_ppt.R | 361 ++++++++++--- RtutoR-1.1/RtutoR/R/launch_plotter.R | 88 +++ RtutoR-1.1/RtutoR/inst |only RtutoR-1.1/RtutoR/man/generate_exploratory_analysis_ppt.Rd | 10 8 files changed, 469 insertions(+), 105 deletions(-)
Title: Accesses Air Quality Data from the Open Data Platform OpenAQ
Description: Allows access to air quality data from the API of the OpenAQ
platform <https://docs.openaq.org/>, with the different services the API offers
(getting measurements for a given query, getting latest measurements, getting
lists of available countries/cities/locations).
Author: Maëlle Salmon [aut, cre],
Andrew MacDonald [ctb] (Andrew MacDonald reviewed the package for
rOpenSci, see https://github.com/ropensci/onboarding/issues/24),
Andy Teucher [ctb] (Andy Teucher reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/24),
Mikayla Murphy [ctb]
Maintainer: Maëlle Salmon <maelle.salmon@yahoo.se>
Diff between ropenaq versions 0.2.4 dated 2017-11-20 and 0.2.5 dated 2018-01-03
DESCRIPTION | 6 MD5 | 22 - NEWS.md | 4 inst/doc/Ropenaq-vignette.html | 4 inst/doc/graphics_of_pm_25_concentrations_in_several_countries.Rmd | 140 +++++----- inst/doc/graphics_of_pm_25_concentrations_in_several_countries.html | 4 inst/doc/mapping_openaq_monitors.html | 4 inst/doc/using_openair_package_with_openaq_data.Rmd | 10 inst/doc/using_openair_package_with_openaq_data.html | 15 - tests/testthat/test-latest.R | 1 vignettes/graphics_of_pm_25_concentrations_in_several_countries.Rmd | 140 +++++----- vignettes/using_openair_package_with_openaq_data.Rmd | 10 12 files changed, 191 insertions(+), 169 deletions(-)
Title: Data Generation with Poisson, Binary and Ordinal Components
Description: Generation of multiple count, binary and ordinal variables simultaneously
given the marginal characteristics and association structure. Throughout the package,
the word 'Poisson' is used to imply count data under the assumption of Poisson distribution.
Author: Gul Inan, Hakan Demirtas
Maintainer: Gul Inan <ginan@metu.edu.tr>
Diff between PoisBinOrd versions 1.2 dated 2016-05-13 and 1.3 dated 2018-01-03
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/PoisBinOrd-package.Rd | 6 +++--- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Data Generation with Poisson, Binary and Continuous Components
Description: Generation of multiple count, binary and continuous variables simultaneously
given the marginal characteristics and association structure. Throughout the package,
the word 'Poisson' is used to imply count data under the assumption of Poisson distribution.
Author: Gul Inan, Hakan Demirtas
Maintainer: Gul Inan <ginan@metu.edu.tr>
Diff between PoisBinNonNor versions 1.1 dated 2016-05-13 and 1.2 dated 2018-01-03
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/PoisBinNonNor-package.Rd | 6 +++--- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance 'MongoDB' client based on 'libmongoc' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication. The online user manual provides an overview of the
available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre],
MongoDB, Inc [cph] (Bundled mongo-c-driver, see AUTHORS file)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between mongolite versions 1.4 dated 2017-12-22 and 1.5 dated 2018-01-03
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS | 4 ++++ R/bson.R | 4 +++- R/client.R | 5 +++-- R/mongo.R | 12 +++++++++--- man/mongo.Rd | 3 ++- src/collection.c | 17 +++++++++++------ 8 files changed, 42 insertions(+), 23 deletions(-)
Title: Circle Manhattan Plot
Description: Manhattan plot, a type of scatter plot, was widely used to display the association results. However, it is usually time-consuming and laborious for a
non-specialist user to write scripts and adjust parameters of an elaborate plot. Moreover, the ever-growing traits measured have necessitated the
integration of results from different Genome-wide association study researches. Circle Manhattan Plot is the first open R package that can lay out
Genome-wide association study P-value results in both traditional rectangular patterns, QQ-plot and novel circular ones. United in only one bull's eye style
plot, association results from multiple traits can be compared interactively, thereby to reveal both similarities and differences between signals.
Author: LiLin-Yin
Maintainer: LiLin-Yin <ylilin@163.com>
Diff between CMplot versions 3.3.0 dated 2017-12-14 and 3.3.1 dated 2018-01-03
DESCRIPTION | 8 - MD5 | 8 - NAMESPACE | 4 R/CMplot.r | 205 +++++++++++++++++++++++++++++++++++++++----------- man/CMplot-package.Rd | 18 ++-- 5 files changed, 179 insertions(+), 64 deletions(-)
Title: Data Generation with Binary and Continuous Non-Normal Components
Description: Generation of multiple binary and continuous non-normal variables simultaneously
given the marginal characteristics and association structure based on the methodology
proposed by Demirtas et al. (2012).
Author: Gul Inan, Hakan Demirtas
Maintainer: Gul Inan <ginan@metu.edu.tr>
Diff between BinNonNor versions 1.3 dated 2016-05-13 and 1.4 dated 2018-01-03
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/BinNonNor-package.Rd | 6 +++--- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: A Tidy Tool for Phylogenetic Tree Data Manipulation
Description: Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Author: Guangchuang Yu [aut, cre, cph] (0000-0002-6485-8781),
Bradley Jones [ctb],
Zebulun Arendsee [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between tidytree versions 0.1.5 dated 2017-12-14 and 0.1.6 dated 2018-01-03
DESCRIPTION | 6 MD5 | 30 ++-- NAMESPACE | 1 NEWS | 8 + R/AllClasses.R | 12 + R/ancestor.R | 79 ++++++++++-- R/as-data-frame.R | 9 - R/offspring.R | 35 +++++ R/show.R | 7 - R/sibling.R | 2 README.md |only inst/doc/tidytree.R | 12 - inst/doc/tidytree.Rmd | 12 - inst/doc/tidytree.html | 178 +++++++++++++++-------------- man/treedata.Rd |only tests/testthat/test-access-related-nodes.R | 3 vignettes/tidytree.Rmd | 12 - 17 files changed, 263 insertions(+), 143 deletions(-)
Title: Google Search Console R Client
Description: Provides an interface with the Google Search Console,
formally called Google Webmaster Tools.
Author: Mark Edmondson [aut, cre],
Jennifer Bryan [ctb],
Parzakonis Manos [ctb]
Maintainer: Mark Edmondson <r@sunholo.com>
Diff between searchConsoleR versions 0.2.1 dated 2016-06-24 and 0.3.0 dated 2018-01-03
searchConsoleR-0.2.1/searchConsoleR/R/zzz.R |only searchConsoleR-0.3.0/searchConsoleR/DESCRIPTION | 18 searchConsoleR-0.3.0/searchConsoleR/LICENSE | 4 searchConsoleR-0.3.0/searchConsoleR/MD5 | 75 - searchConsoleR-0.3.0/searchConsoleR/NAMESPACE | 1 searchConsoleR-0.3.0/searchConsoleR/R/auth.R |only searchConsoleR-0.3.0/searchConsoleR/R/getData.R | 434 +++++----- searchConsoleR-0.3.0/searchConsoleR/R/options.R |only searchConsoleR-0.3.0/searchConsoleR/R/reqParse.R | 86 - searchConsoleR-0.3.0/searchConsoleR/R/utility.R | 138 +-- searchConsoleR-0.3.0/searchConsoleR/README.md | 6 searchConsoleR-0.3.0/searchConsoleR/build/vignette.rds |binary searchConsoleR-0.3.0/searchConsoleR/inst/clients |only searchConsoleR-0.3.0/searchConsoleR/inst/doc/searchConsoleR-intro.Rmd | 19 searchConsoleR-0.3.0/searchConsoleR/inst/doc/searchConsoleR-intro.html | 27 searchConsoleR-0.3.0/searchConsoleR/man/RFC_convert.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/add_sitemap.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/add_website.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/check.Url.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/crawl_errors.Rd | 3 searchConsoleR-0.3.0/searchConsoleR/man/delete_sitemap.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/delete_website.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/error_sample_url.Rd | 9 searchConsoleR-0.3.0/searchConsoleR/man/fix_sample_url.Rd | 11 searchConsoleR-0.3.0/searchConsoleR/man/is.error.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/is.valid.category.platform.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/list_crawl_error_samples.Rd | 3 searchConsoleR-0.3.0/searchConsoleR/man/list_sitemaps.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/list_websites.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/lookupCountryCode.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/parseDimFilterGroup.Rd | 6 searchConsoleR-0.3.0/searchConsoleR/man/parse_crawlerror_sample.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/parse_crawlerrors.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/parse_errorsample_url.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/parse_search_analytics.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/parse_sitemaps.Rd | 1 searchConsoleR-0.3.0/searchConsoleR/man/scr_auth.Rd | 61 + searchConsoleR-0.3.0/searchConsoleR/man/search_analytics.Rd | 91 +- searchConsoleR-0.3.0/searchConsoleR/tests |only searchConsoleR-0.3.0/searchConsoleR/vignettes/searchConsoleR-intro.Rmd | 19 40 files changed, 545 insertions(+), 482 deletions(-)
More information about searchConsoleR at CRAN
Permanent link
Title: Knowledge Space Theory
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kst' package provides
basic functionalities to generate, handle, and manipulate knowledge
structures and knowledge spaces.
Author: Christina Stahl [aut],
David Meyer [aut], Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kst versions 0.2-2 dated 2017-12-13 and 0.3-0 dated 2018-01-03
Changelog | 23 ++++++++++-- DESCRIPTION | 12 +++--- MD5 | 54 +++++++++++++++-------------- NAMESPACE | 5 +- R/as.relation.kbase.R |only R/closure.kbase.R |only R/katoms.R | 92 ++++++++++++++++++++++++++------------------------ R/kbase.R | 10 +++-- R/kdomain.R | 9 +++- R/kfringe.R | 54 ++++++++++++++--------------- R/kfringe_inner.R | 69 +++++++++++++++---------------------- R/kfringe_outer.R | 69 +++++++++++++++---------------------- R/kneighbourhood.R |only R/knotions.R | 9 +++- R/kspace.R | 11 ++++- R/kstructure.R | 1 demo/kst.R | 14 +++---- inst/doc/kst.R | 39 +++++++++++---------- inst/doc/kst.Rnw | 21 +++++++---- inst/doc/kst.pdf |binary man/as.relation.Rd | 5 ++ man/closure.Rd | 9 +++- man/katoms.Rd | 5 +- man/kbase.Rd | 8 ++-- man/kdomain.Rd | 9 ++-- man/kfringe.Rd | 52 +++++++++++----------------- man/kneighbourhood.Rd |only man/knotions.Rd | 9 ++-- man/space.Rd | 9 ++-- vignettes/kst.Rnw | 21 +++++++---- 30 files changed, 324 insertions(+), 295 deletions(-)
Title: Bayesian Nonparametric Modeling in R
Description: Functions to perform inference via
simulation from the posterior distributions for Bayesian
nonparametric and semiparametric models. Although the name of
the package was motivated by the Dirichlet Process prior, the
package considers and will consider other priors on functional
spaces. So far, DPpackage includes models considering Dirichlet
Processes, Dependent Dirichlet Processes, Dependent Poisson-
Dirichlet Processes, Hierarchical Dirichlet Processes, Polya
Trees, Linear Dependent Tailfree Processes, Mixtures of
Triangular distributions, Random Bernstein polynomials priors
and Dependent Bernstein Polynomials. The package also includes
models considering Penalized B-Splines.
Includes semiparametric models for marginal and conditional
density estimation, ROC curve analysis, interval censored data,
binary regression models, generalized linear mixed models, IRT
type models, and generalized additive models. Also
contains functions to compute Pseudo-Bayes factors for model
comparison, and to elicitate the precision parameter of the
Dirichlet Process. To maximize computational efficiency, the
actual sampling for each model is done in compiled FORTRAN. The
functions return objects which can be subsequently analyzed
with functions provided in the 'coda' package.
Author: Alejandro Jara [aut, cre], Timothy Hanson [ctb], Fernando
Quintana [ctb], Peter Mueller [ctb], Gary Rosner [ctb]
Maintainer: ORPHANED
Diff between DPpackage versions 1.1-7.2 dated 2017-12-19 and 1.1-7.3 dated 2018-01-03
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- src/DPdensityreg.f | 4 ++-- src/LDBDPdensity.f | 4 ++-- src/LDDPdensity.f | 12 ++++++------ src/LDDPsurvival.f | 8 ++++---- src/LDPDdoublyintsba.f | 10 +++++----- src/LDTFPdensity.f | 10 +++++----- src/LDTFPglmmpois.f | 8 ++++---- src/LDTFPsurvival.f | 10 +++++----- src/PSgamgam.f | 2 +- src/PSgamgauss.f | 2 +- src/PSgamlogit.f | 2 +- src/PSgampois.f | 2 +- src/PSgamprob.f | 2 +- 15 files changed, 56 insertions(+), 56 deletions(-)
Title: Estimation and Hypothesis Testing for Threshold Regression
Description: Threshold regression models are also called two-phase regression, broken-stick regression, split-point regression, structural change models, and regression kink models. Methods for both continuous and discontinuous threshold models are included, but the support for the former is much greater. This package is described in Fong, Huang, Gilbert and Permar (2017) chngpt: threshold regression model estimation and inference, BMC Bioinformatics, in press, <DOI:10.1186/s12859-017-1863-x>.
Author: Youyi Fong
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between chngpt versions 2017.12-3 dated 2017-12-03 and 2017.12-26 dated 2018-01-03
DESCRIPTION | 6 +-- MD5 | 4 +- src/chnpgt_boot.cc | 102 ++++++++++++++++++++++++++--------------------------- 3 files changed, 56 insertions(+), 56 deletions(-)
Title: Chronomics Analysis Toolkit (CAT): Periodicity Analysis
Description: Calculates auto- and cross-correlation functions and plots an actogram and a smoothing function from a time series to identify and visualize periodic components. Tests presence of anticipated rhythm and estimates rhythm parameters; fits model consisting of multiple rhythmic components to data; performs least squares spectral analysis and other cosinor-based analyses, including population-mean cosinor (pmc).
Author: Cathy Lee Gierke, Ruth Helget, Germaine Cornelissen-Guillaume
Maintainer: Cathy Lee Gierke <leegi001@umn.edu>
Diff between CATkit versions 3.0.0.2 dated 2017-02-17 and 3.2.3 dated 2018-01-03
DESCRIPTION | 14 MD5 | 28 - NAMESPACE | 8 R/CATCosinor.R | 1056 +++++++++++++++++++++++++++--------------------- R/CatCall.R | 100 ++-- R/closeOutput.R | 28 - R/consolidate.R |only R/module.R |only R/phase.R |only R/phsrd.R |only R/pmc.R |only R/pmc_internal.R |only inst/extdata/Fnc1.txt |only inst/extdata/Fnc2.txt |only inst/extdata/Fnc3.txt |only inst/extdata/ReadMe.rtf | 29 - man/CATkit-package.Rd | 13 man/CatCall.rd | 68 +-- man/CatCosinor.rd | 92 ++-- man/pmc.Rd |only 20 files changed, 830 insertions(+), 606 deletions(-)
Title: Hierarchical Bayesian Modeling of Decision-Making Tasks
Description: Fit an array of decision-making tasks with computational models in
a hierarchical Bayesian framework. Can perform hierarchical Bayesian analysis of
various computational models with a single line of coding.
Author: Woo-Young Ahn [aut, cre],
Nate Haines [aut],
Lei Zhang [aut]
Maintainer: Woo-Young Ahn <wooyoung.ahn@gmail.com>
Diff between hBayesDM versions 0.4.0 dated 2017-05-23 and 0.5.0 dated 2018-01-03
DESCRIPTION | 14 +- MD5 | 210 ++++++++++++++++---------------- NAMESPACE | 10 + R/bandit2arm_delta.R | 105 +++++++++------- R/bandit4arm_4par.R | 93 ++++++++------ R/bandit4arm_lapse.R | 97 ++++++++------ R/choiceRT_ddm.R | 86 +++++++------ R/choiceRT_ddm_single.R | 84 +++++++----- R/choiceRT_lba.R | 89 +++++++------ R/choiceRT_lba_single.R | 85 +++++++----- R/dd_cs.R | 103 ++++++++------- R/dd_cs_single.R | 112 +++++++++-------- R/dd_exp.R | 105 +++++++++------- R/dd_hyperbolic.R | 103 ++++++++------- R/dd_hyperbolic_single.R | 106 ++++++++-------- R/gng_m1.R | 93 ++++++++------ R/gng_m2.R | 93 ++++++++------ R/gng_m3.R | 93 ++++++++------ R/gng_m4.R | 87 +++++++------ R/hBayesDM.R | 6 R/igt_pvl_decay.R | 109 +++++++++------- R/igt_pvl_delta.R | 97 ++++++++------ R/igt_vpp.R | 99 ++++++++------- R/peer_ocu.R |only R/plot.hBayesDM.R | 21 ++- R/prl_ewa.R | 77 +++++++---- R/prl_fictitious.R | 77 +++++++---- R/prl_fictitious_multipleB.R | 83 +++++++----- R/prl_fictitious_rp.R |only R/prl_rp.R | 77 +++++++---- R/prl_rp_multipleB.R | 79 +++++++----- R/ra_noLA.R | 72 ++++++---- R/ra_noRA.R | 76 +++++++---- R/ra_prospect.r | 74 ++++++----- R/rhat.R | 7 - R/ug_bayes.R | 80 +++++++----- R/ug_delta.R | 106 +++++++++------- inst/NEWS | 54 ++++++++ inst/extdata/peer_exampleData.txt |only inst/plotting/plot_functions.R | 41 ++++++ inst/stan/bandit2arm_delta.stan | 67 ++++++---- inst/stan/bandit4arm_4par.stan | 87 +++++++------ inst/stan/bandit4arm_lapse.stan | 85 +++++++----- inst/stan/choiceRT_ddm.stan | 82 ++++++------ inst/stan/choiceRT_ddm_single.stan | 52 ++++--- inst/stan/choiceRT_lba.stan | 106 +++++++++------- inst/stan/choiceRT_lba_single.stan | 42 ++++-- inst/stan/dd_cs.stan | 45 ++++-- inst/stan/dd_cs_single.stan | 21 ++- inst/stan/dd_exp.stan | 39 +++-- inst/stan/dd_hyperbolic.stan | 39 +++-- inst/stan/dd_hyperbolic_single.stan | 14 +- inst/stan/gng_m1.stan | 82 +++++++----- inst/stan/gng_m1_reg.stan | 93 ++++++++------ inst/stan/gng_m2.stan | 86 +++++++------ inst/stan/gng_m2_reg.stan | 97 ++++++++------ inst/stan/gng_m3.rds |only inst/stan/gng_m3.stan | 96 ++++++++------ inst/stan/gng_m3_reg.stan | 109 +++++++++------- inst/stan/gng_m4.stan | 98 ++++++++------ inst/stan/gng_m4_reg.stan | 111 +++++++++------- inst/stan/igt_pvl_decay.stan | 67 ++++++---- inst/stan/igt_pvl_delta.stan | 67 ++++++---- inst/stan/igt_vpp.stan | 95 ++++++++------ inst/stan/peer_ocu.stan |only inst/stan/prl_ewa.stan | 83 +++++++----- inst/stan/prl_fictitious.stan | 71 ++++++---- inst/stan/prl_fictitious_multipleB.stan | 124 ++++++++++-------- inst/stan/prl_fictitious_rp.stan |only inst/stan/prl_rp.stan | 71 ++++++---- inst/stan/prl_rp_multipleB.stan | 85 +++++++----- inst/stan/ra_noLA.stan | 36 +++-- inst/stan/ra_noRA.stan | 36 +++-- inst/stan/ra_prospect.stan | 36 +++-- inst/stan/ug_bayes.stan | 67 ++++++---- inst/stan/ug_delta.stan | 85 +++++++----- man/bandit2arm_delta.Rd | 10 - man/bandit4arm_4par.Rd | 10 - man/bandit4arm_lapse.Rd | 10 - man/choiceRT_ddm.Rd | 11 + man/choiceRT_ddm_single.Rd | 11 + man/choiceRT_lba.Rd | 11 + man/choiceRT_lba_single.Rd | 10 - man/dd_cs.Rd | 11 + man/dd_cs_single.Rd | 11 + man/dd_exp.Rd | 11 + man/dd_hyperbolic.Rd | 11 + man/dd_hyperbolic_single.Rd | 12 + man/gng_m1.Rd | 11 + man/gng_m2.Rd | 11 + man/gng_m3.Rd | 11 + man/gng_m4.Rd | 11 + man/hBayesDM-package.Rd | 6 man/igt_pvl_decay.Rd | 11 + man/igt_pvl_delta.Rd | 11 + man/igt_vpp.Rd | 11 + man/peer_ocu.Rd |only man/plot.hBayesDM.Rd | 2 man/prl_ewa.Rd | 11 + man/prl_fictitious.Rd | 10 - man/prl_fictitious_multipleB.Rd | 10 - man/prl_fictitious_rp.Rd |only man/prl_rp.Rd | 11 + man/prl_rp_multipleB.Rd | 10 - man/ra_noLA.Rd | 11 + man/ra_noRA.Rd | 11 + man/ra_prospect.Rd | 11 + man/rhat.Rd | 3 man/ug_bayes.Rd | 11 + man/ug_delta.Rd | 11 + 110 files changed, 3374 insertions(+), 2327 deletions(-)
Title: Deciphering Central Informative Nodes in Network Analysis
Description: Functions for computing, comparing and demonstrating top informative centrality measures within a network.
Author: Minoo Ashtiani,
Mohieddin Jafari
Maintainer: Minoo Ashtiani <m_ashtiani@pasteur.ac.ir>
Diff between CINNA versions 1.1.2 dated 2017-10-23 and 1.1.3 dated 2018-01-03
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- inst/doc/CINNA.Rmd | 2 +- inst/doc/CINNA.html | 44 ++++++++++++++++++++++---------------------- vignettes/CINNA.Rmd | 2 +- 5 files changed, 33 insertions(+), 33 deletions(-)
Title: Estimation, Gene Selection, and Survival Prediction Based on the
Compound Covariate Method Under the Cox Model
Description: Estimation, gene selection, and survival prediction based on the compound covariate method under the Cox model with high-dimensional gene expressions.
Available are survival data for non-small-cell lung cancer patients with gene expressions (Chen et al 2007 New Engl J Med) <DOI:10.1056/NEJMoa060096>,
statistical methods in Emura et al (2012 PLoS ONE) <DOI:10.1371/journal.pone.0047627> and
Emura & Chen (2016 Stat Methods Med Res) <DOI:10.1177/0962280214533378>. Algorithms for generating correlated gene expressions are also available.
Author: Takeshi Emura, Hsuan-Yu Chen, Shigeyuki Matsui, Yi-Hau Chen
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between compound.Cox versions 3.6 dated 2017-11-18 and 3.7 dated 2018-01-03
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/uni.selection.R | 19 +++++++------------ man/compound.Cox-package.Rd | 4 ++-- man/compound.reg.Rd | 5 ++--- man/dependCox.reg.CV.Rd | 5 ++--- 6 files changed, 22 insertions(+), 29 deletions(-)