Title: Statistical Downscaling Toolkit for Climate Change Scenario
using Non Parametric Quantile Mapping
Description: Conducts statistical downscaling of daily CMIP5 (Coupled Model Intercomparison Project 5) climate change scenario data at a station level using empirical quantile mapping method by Jaepil Cho et al. (2016) <doi:10.1002/ird.2035>.
Author: Jaepil Cho [aut],
Wonil Cho [aut, cre],
Imgook Jung [aut]
Maintainer: Wonil Cho <climate.service@apcc21.org>
Diff between rSQM versions 1.2.42 dated 2017-09-25 and 1.3.14 dated 2018-01-11
DESCRIPTION | 10 MD5 | 47 NEWS.md |only R/CalSradiation.R | 6 R/CheckDaysOfYear.R | 20 R/Cmip5Var2Stn.R | 69 - R/DailyExtractAll.R | 2 R/DailyQMapAll.R | 65 - R/ExtractPointValue.R | 40 R/Fill360Date.R | 60 - R/Fill365Date.R | 54 R/FillDate.R | 56 R/GetQmapFit.R | 22 R/GetQmapFit2.R | 8 R/GhcnDailyUpdate.R | 3 R/ObsDataSummary.R | 8 R/Qmap.R | 3 R/ReadNetCDF4.R | 28 R/SetWorkingEnvironment.R | 28 README.md |only build/vignette.rds |binary inst/doc/rSQM-workflow.Rmd | 350 +++++ inst/doc/rSQM-workflow.html | 2608 +++++++++++++++++++++++++++++++++++++++++++- man/ObsDataSummary.Rd | 2 vignettes/img |only vignettes/rSQM-workflow.Rmd | 350 +++++ 26 files changed, 3473 insertions(+), 366 deletions(-)
Title: Permits *apply() Style Dispatch for 'HPC'
Description: Function of apply style using 'MPI' provides better 'HPC' environment on R.
And this package supports long vector, can deal with slightly big data.
Author: Junji NAKANO <nakanoj@ism.ac.jp> and Ei-ji Nakama<nakama@com-one.com>
Maintainer: Ei-ji Nakama <nakama@com-one.com>
Diff between Rhpc versions 0.17-353 dated 2017-12-19 and 0.18-12 dated 2018-01-11
ChangeLog | 29 +++++--- DESCRIPTION | 10 +- MD5 | 46 ++++++------- R/Rhpc.R | 31 +++++---- R/RhpcExt.R | 23 ++++-- R/RhpcSerialzie.R | 10 ++ README | 38 ++++++++++- configure | 2 configure.ac | 2 man/Rhpc-package.Rd | 30 +++++--- src/RhpcMPI.c | 30 +++----- src/RhpcMPIWorkerCall.h | 17 ++--- src/RhpcMPIlapplyLB.h | 24 +++---- src/RhpcMPIlapplyseq.h | 20 +++-- src/RhpcSerialize.c | 124 +++++++++++++++++++++++++++++++++++++ src/common/Rhpc.h | 114 ++++++++++++++++++++++++++-------- src/common/Rhpc_ms.h | 25 +++++++ src/common/config.h.in | 3 src/common/fakemaster.h | 17 +++++ src/worker/RhpcWorker.c | 12 +-- src/worker/RhpcWorker_LapplyLB.h | 34 ++++++---- src/worker/RhpcWorker_Lapplyseq.h | 41 +++++++----- src/worker/RhpcWorker_WorkerCall.h | 32 +++++---- src/worker/fakemaster.c | 18 +++++ 24 files changed, 535 insertions(+), 197 deletions(-)
Title: Convolution of Gamma Distributions
Description: Convolution of gamma distributions in R. The convolution of
gamma distributions is the sum of series of gamma
distributions and all gamma distributions here can have different
parameters. This package can calculate density, distribution function
and do simulation work.
Author: Chaoran Hu [aut, cre],
Vladimir Pozdnyakov [ths],
Jun Yan [ths]
Maintainer: Chaoran Hu <chaoran.hu@uconn.edu>
Diff between coga versions 0.2.1 dated 2017-07-27 and 0.2.2 dated 2018-01-11
coga-0.2.1/coga/build |only coga-0.2.1/coga/inst/doc |only coga-0.2.1/coga/vignettes |only coga-0.2.2/coga/DESCRIPTION | 13 coga-0.2.2/coga/MD5 | 30 - coga-0.2.2/coga/NAMESPACE | 2 coga-0.2.2/coga/NEWS.md | 17 coga-0.2.2/coga/R/RcppExports.R | 100 +++- coga-0.2.2/coga/configure | 18 coga-0.2.2/coga/configure.ac | 2 coga-0.2.2/coga/inst/CITATION | 8 coga-0.2.2/coga/inst/include/coga_RcppExports.h | 315 ++++++++++++ coga-0.2.2/coga/inst/vignette |only coga-0.2.2/coga/man/dcoga_approx.Rd |only coga-0.2.2/coga/src/RcppExports.cpp | 598 ++++++++++++++++++++++-- coga-0.2.2/coga/src/approxcoga.cpp |only coga-0.2.2/coga/src/coga2dim.cpp | 29 - coga-0.2.2/coga/src/dpcoga.cpp | 12 18 files changed, 1038 insertions(+), 106 deletions(-)
Title: Modern Text Mining Framework for R
Description: Fast and memory-friendly tools for text vectorization, topic
modeling (LDA, LSA), word embeddings (GloVe), similarities. This package
provides a source-agnostic streaming API, which allows researchers to perform
analysis of collections of documents which are larger than available RAM. All
core functions are parallelized to benefit from multicore machines.
Author: Dmitriy Selivanov [aut, cre, cph],
Qing Wang [aut, cph] (Author of the WaprLDA C++ code)
Maintainer: Dmitriy Selivanov <selivanov.dmitriy@gmail.com>
Diff between text2vec versions 0.5.0 dated 2017-08-08 and 0.5.1 dated 2018-01-11
text2vec-0.5.0/text2vec/R/mlapi_R6.R |only text2vec-0.5.0/text2vec/R/mlapi_S3.R |only text2vec-0.5.0/text2vec/man/collect.Rd |only text2vec-0.5.0/text2vec/man/fit.Rd |only text2vec-0.5.0/text2vec/man/fit_transform.Rd |only text2vec-0.5.0/text2vec/man/transform.Rd |only text2vec-0.5.0/text2vec/tests/testthat/not-test-doc2vec.R |only text2vec-0.5.1/text2vec/DESCRIPTION | 16 - text2vec-0.5.1/text2vec/MD5 | 117 ++++++------ text2vec-0.5.1/text2vec/NAMESPACE | 15 - text2vec-0.5.1/text2vec/NEWS.md | 16 + text2vec-0.5.1/text2vec/R/RcppExports.R | 4 text2vec-0.5.1/text2vec/R/analogies.R | 23 +- text2vec-0.5.1/text2vec/R/distance_RWMD.R | 35 +-- text2vec-0.5.1/text2vec/R/dtm.R | 92 +--------- text2vec-0.5.1/text2vec/R/iterators.R | 46 ++++- text2vec-0.5.1/text2vec/R/model_Collocations.R | 119 ++++++++----- text2vec-0.5.1/text2vec/R/model_GloVe.R | 6 text2vec-0.5.1/text2vec/R/model_LDA.R | 30 +-- text2vec-0.5.1/text2vec/R/model_LSA.R | 4 text2vec-0.5.1/text2vec/R/model_bns.R |only text2vec-0.5.1/text2vec/R/model_tfidf.R | 6 text2vec-0.5.1/text2vec/R/perplexity.R | 6 text2vec-0.5.1/text2vec/R/tcm.R | 2 text2vec-0.5.1/text2vec/R/text2vec.R | 8 text2vec-0.5.1/text2vec/R/tokenizers.R | 28 +-- text2vec-0.5.1/text2vec/R/utils.R | 13 + text2vec-0.5.1/text2vec/R/vocabulary.R | 23 +- text2vec-0.5.1/text2vec/build/vignette.rds |binary text2vec-0.5.1/text2vec/inst/doc/files-multicore.html | 44 ++-- text2vec-0.5.1/text2vec/inst/doc/glove.html | 20 +- text2vec-0.5.1/text2vec/inst/doc/text-vectorization.R | 18 - text2vec-0.5.1/text2vec/inst/doc/text-vectorization.Rmd | 18 - text2vec-0.5.1/text2vec/inst/doc/text-vectorization.html | 106 +++++------ text2vec-0.5.1/text2vec/man/BNS.Rd |only text2vec-0.5.1/text2vec/man/Collocations.Rd | 47 +++-- text2vec-0.5.1/text2vec/man/GlobalVectors.Rd | 4 text2vec-0.5.1/text2vec/man/LatentDirichletAllocation.Rd | 6 text2vec-0.5.1/text2vec/man/LatentSemanticAnalysis.Rd | 2 text2vec-0.5.1/text2vec/man/RelaxedWordMoversDistance.Rd | 8 text2vec-0.5.1/text2vec/man/TfIdf.Rd | 2 text2vec-0.5.1/text2vec/man/create_dtm.Rd | 5 text2vec-0.5.1/text2vec/man/create_tcm.Rd | 2 text2vec-0.5.1/text2vec/man/create_vocabulary.Rd | 5 text2vec-0.5.1/text2vec/man/itoken.Rd | 6 text2vec-0.5.1/text2vec/man/perplexity.Rd | 6 text2vec-0.5.1/text2vec/man/reexports.Rd | 6 text2vec-0.5.1/text2vec/man/tokenizers.Rd | 15 - text2vec-0.5.1/text2vec/src/HashCorpus.cpp | 2 text2vec-0.5.1/text2vec/src/RcppExports.cpp | 11 - text2vec-0.5.1/text2vec/src/VocabCorpus.cpp | 2 text2vec-0.5.1/text2vec/src/collocations.cpp | 27 +- text2vec-0.5.1/text2vec/src/matrix_utils.cpp | 2 text2vec-0.5.1/text2vec/tests/testthat.R | 1 text2vec-0.5.1/text2vec/tests/testthat/test-colloc.R | 86 +++++++++ text2vec-0.5.1/text2vec/tests/testthat/test-distances.R | 6 text2vec-0.5.1/text2vec/tests/testthat/test-hash-corpus.R | 4 text2vec-0.5.1/text2vec/tests/testthat/test-iterators.R | 36 ++- text2vec-0.5.1/text2vec/tests/testthat/test-lda.R | 4 text2vec-0.5.1/text2vec/tests/testthat/test-lsa.R | 4 text2vec-0.5.1/text2vec/tests/testthat/test-s3-interface.R | 17 + text2vec-0.5.1/text2vec/tests/testthat/test-utils.R | 10 - text2vec-0.5.1/text2vec/tests/testthat/test-vocab-corpus.R | 18 - text2vec-0.5.1/text2vec/vignettes/text-vectorization.Rmd | 18 - 64 files changed, 652 insertions(+), 525 deletions(-)
Title: Soil Database Interface
Description: A collection of functions for reading data from USDA-NCSS soil databases.
Author: D.E. Beaudette and J. Skovlin, and S.M. Roecker
Maintainer: D.E. Beaudette <dylan.beaudette@ca.usda.gov>
Diff between soilDB versions 1.8.14 dated 2017-11-16 and 2.0 dated 2018-01-11
soilDB-1.8.14/soilDB/R/get_phorizon_from_NASIS_db.R |only soilDB-1.8.14/soilDB/R/get_vegplot_from_NASIS_db.R |only soilDB-1.8.14/soilDB/R/nasis_component_data.R |only soilDB-2.0/soilDB/.Rinstignore | 4 soilDB-2.0/soilDB/DESCRIPTION | 8 soilDB-2.0/soilDB/MD5 | 103 +- soilDB-2.0/soilDB/NEWS | 2 soilDB-2.0/soilDB/R/KSSL_VG_model.R | 86 - soilDB-2.0/soilDB/R/SDA_query.R | 560 +++++------ soilDB-2.0/soilDB/R/fetchHenry.R | 11 soilDB-2.0/soilDB/R/fetchNASIS.R | 184 --- soilDB-2.0/soilDB/R/fetchNASIS_components.R |only soilDB-2.0/soilDB/R/fetchNASIS_pedons.R | 227 ++-- soilDB-2.0/soilDB/R/fetchPedonPC.R | 3 soilDB-2.0/soilDB/R/get_colors_from_NASIS_db.R | 30 soilDB-2.0/soilDB/R/get_colors_from_pedon_db.R | 6 soilDB-2.0/soilDB/R/get_component_data_from_NASIS_db.R |only soilDB-2.0/soilDB/R/get_component_from_LIMS.R | 129 ++ soilDB-2.0/soilDB/R/get_component_from_SDA.R | 32 soilDB-2.0/soilDB/R/get_cosoilmoist_from_LIMS.R | 75 - soilDB-2.0/soilDB/R/get_cosoilmoist_from_NASIS.R | 57 - soilDB-2.0/soilDB/R/get_cosoilmoist_from_SDA.R | 48 soilDB-2.0/soilDB/R/get_extended_data_from_NASIS_db.R | 365 +++---- soilDB-2.0/soilDB/R/get_extended_data_from_pedon_db.R | 35 soilDB-2.0/soilDB/R/get_hz_data_from_NASIS_db.R | 105 +- soilDB-2.0/soilDB/R/get_phlabresults_data_from_NASIS_db.R | 16 soilDB-2.0/soilDB/R/get_projectmapunit_from_NASIS.R | 10 soilDB-2.0/soilDB/R/get_site_data_from_NASIS_db.R | 113 -- soilDB-2.0/soilDB/R/get_site_data_from_pedon_db.R | 21 soilDB-2.0/soilDB/R/get_text_notes_from_NASIS_db.R | 24 soilDB-2.0/soilDB/R/get_veg_data_from_NASIS_db.R |only soilDB-2.0/soilDB/R/get_vegplot_data_from_NASIS_db.R | 129 -- soilDB-2.0/soilDB/R/mix_and_clean_colors.R | 138 +- soilDB-2.0/soilDB/R/parseWebReport.R | 134 +- soilDB-2.0/soilDB/R/seriesExtent.R | 4 soilDB-2.0/soilDB/R/simplfyFragmentData.R | 300 +++-- soilDB-2.0/soilDB/R/simplifyColorData.R | 175 +-- soilDB-2.0/soilDB/R/uncode.R | 17 soilDB-2.0/soilDB/R/utils.R | 128 ++ soilDB-2.0/soilDB/man/KSSL_VG_model.Rd | 108 +- soilDB-2.0/soilDB/man/SDA_query.Rd | 57 - soilDB-2.0/soilDB/man/SDA_query_features.Rd | 13 soilDB-2.0/soilDB/man/fetchLIMS_component.Rd |only soilDB-2.0/soilDB/man/fetchNASIS.Rd | 38 soilDB-2.0/soilDB/man/fetchSDA_component.Rd | 40 soilDB-2.0/soilDB/man/get_colors_from_NASIS_db.Rd | 6 soilDB-2.0/soilDB/man/get_comonth_from_NASIS_db.Rd |only soilDB-2.0/soilDB/man/get_component_data_from_NASIS_db.Rd |only soilDB-2.0/soilDB/man/get_extended_data_from_NASIS.Rd |only soilDB-2.0/soilDB/man/get_hz_data_from_NASIS_db.Rd | 6 soilDB-2.0/soilDB/man/get_lablayer_data_from_NASIS_db.Rd | 2 soilDB-2.0/soilDB/man/get_phlabresults_data_from_NASIS_db.Rd | 6 soilDB-2.0/soilDB/man/get_site_data_from_NASIS_db.Rd | 19 soilDB-2.0/soilDB/man/get_text_notes_from_NASIS_db.Rd |only soilDB-2.0/soilDB/man/get_veg_data_from_NASIS_db.Rd |only soilDB-2.0/soilDB/man/mapunit_geom_by_ll_bbox.Rd | 7 soilDB-2.0/soilDB/man/parseWebReport.Rd | 54 - soilDB-2.0/soilDB/man/simplfyFragmentData.Rd |only soilDB-2.0/soilDB/man/simplifyColorData.Rd | 72 - soilDB-2.0/soilDB/man/uncode.Rd | 15 60 files changed, 1830 insertions(+), 1892 deletions(-)
Title: Preprocessing Tools to Create Design Matrices
Description: An extensible framework to create and preprocess
design matrices. Recipes consist of one or more data manipulation
and analysis "steps". Statistical parameters for the steps can
be estimated from an initial data set and then applied to
other data sets. The resulting design matrices can then be used
as inputs into statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between recipes versions 0.1.1 dated 2017-11-20 and 0.1.2 dated 2018-01-11
DESCRIPTION | 6 MD5 | 291 ++++++++------- NAMESPACE | 36 + NEWS.md | 32 + R/BoxCox.R | 17 R/YeoJohnson.R | 17 R/bag_imp.R | 17 R/bin2factor.R | 17 R/bs.R | 17 R/center.R | 23 - R/classdist.R | 17 R/colcheck.R |only R/corr.R | 17 R/count.R | 17 R/date.R | 17 R/depth.R | 17 R/discretize.R | 50 +- R/downsample.R |only R/dummy.R | 18 R/factor2string.R | 17 R/holiday.R | 20 - R/hyperbolic.R | 22 - R/ica.R | 17 R/interactions.R | 15 R/intercept.R | 27 + R/invlogit.R | 19 - R/isomap.R | 17 R/knn_imp.R | 16 R/kpca.R | 17 R/lincombo.R | 17 R/log.R | 19 - R/logit.R | 19 - R/lowerimpute.R | 17 R/meanimpute.R | 17 R/misc.R | 97 ++--- R/missing.r |only R/modeimpute.R | 17 R/novel.R |only R/ns.R | 17 R/num2factor.R |only R/nzv.R | 17 R/ordinalscore.R | 17 R/other.R | 20 - R/pca.R | 17 R/poly.R | 17 R/profile.R |only R/range.R | 17 R/ratio.R | 17 R/recipe.R | 129 ++++-- R/regex.R | 20 - R/relu.R | 15 R/rm.R | 17 R/scale.R | 17 R/selections.R | 4 R/shuffle.R | 17 R/sparsity.R | 14 R/spatialsign.R | 32 + R/sqrt.R | 21 - R/steps_and_checks.R |only R/string2factor.R | 20 - R/tidy.R | 58 +-- R/unorder.R | 19 - R/upsample.R |only R/window.R | 17 R/zv.R | 17 build/vignette.rds |binary inst/doc/Custom_Steps.R | 37 + inst/doc/Custom_Steps.Rmd | 68 ++- inst/doc/Custom_Steps.html | 688 +++++++++++++++++++++++++------------ inst/doc/Dummies.html | 622 +++++++++++++++++++++++---------- inst/doc/Ordering.html | 222 +++++++++++ inst/doc/Selecting_Variables.html | 434 ++++++++++++++++++----- inst/doc/Simple_Example.R | 12 inst/doc/Simple_Example.Rmd | 25 + inst/doc/Simple_Example.html | 598 ++++++++++++++++++++++---------- inst/doc/Skipping.R |only inst/doc/Skipping.Rmd |only inst/doc/Skipping.html |only man/add_step.Rd | 12 man/bake.Rd | 12 man/check_cols.Rd |only man/check_missing.Rd |only man/discretize.Rd | 37 - man/fixed.Rd |only man/juice.Rd | 6 man/prep.Rd | 23 - man/recipe.Rd | 19 - man/step.Rd | 21 - man/step_BoxCox.Rd | 9 man/step_YeoJohnson.Rd | 9 man/step_bagimpute.Rd | 10 man/step_bin2factor.Rd | 9 man/step_bs.Rd | 9 man/step_center.Rd | 9 man/step_classdist.Rd | 9 man/step_corr.Rd | 10 man/step_count.Rd | 9 man/step_date.Rd | 9 man/step_depth.Rd | 9 man/step_discretize.Rd |only man/step_downsample.Rd |only man/step_dummy.Rd | 11 man/step_factor2string.Rd | 9 man/step_holiday.Rd | 10 man/step_hyperbolic.Rd | 11 man/step_ica.Rd | 9 man/step_interact.Rd | 9 man/step_intercept.Rd | 17 man/step_invlogit.Rd | 12 man/step_isomap.Rd | 9 man/step_knnimpute.Rd | 9 man/step_kpca.Rd | 9 man/step_lincomb.Rd | 9 man/step_log.Rd | 11 man/step_logit.Rd | 12 man/step_lowerimpute.Rd | 9 man/step_meanimpute.Rd | 9 man/step_modeimpute.Rd | 10 man/step_novel.Rd |only man/step_ns.Rd | 9 man/step_num2factor.Rd |only man/step_nzv.Rd | 9 man/step_ordinalscore.Rd | 9 man/step_other.Rd | 14 man/step_pca.Rd | 10 man/step_poly.Rd | 9 man/step_profile.Rd |only man/step_range.Rd | 9 man/step_ratio.Rd | 10 man/step_regex.Rd | 9 man/step_relu.Rd | 9 man/step_rm.Rd | 10 man/step_scale.Rd | 9 man/step_shuffle.Rd | 10 man/step_spatialsign.Rd | 16 man/step_sqrt.Rd | 12 man/step_string2factor.Rd | 12 man/step_unorder.Rd | 12 man/step_upsample.Rd |only man/step_window.Rd | 10 man/step_zv.Rd | 10 man/summary.recipe.Rd | 2 man/tidy.recipe.Rd | 20 - tests/testthat/test_center_scale.R | 10 tests/testthat/test_classdist.R | 14 tests/testthat/test_colcheck.R |only tests/testthat/test_downsample.R |only tests/testthat/test_matrix.R |only tests/testthat/test_missing.R |only tests/testthat/test_novel.R |only tests/testthat/test_num2factor.R |only tests/testthat/test_pca.R | 9 tests/testthat/test_profile.R |only tests/testthat/test_skipping.R |only tests/testthat/test_sparsity.R | 12 tests/testthat/test_spatialsign.R | 19 + tests/testthat/test_tidy.R | 19 - tests/testthat/test_upsample.R |only vignettes/Custom_Steps.Rmd | 68 ++- vignettes/Simple_Example.Rmd | 25 + vignettes/Skipping.Rmd |only vignettes/articles |only 162 files changed, 3613 insertions(+), 1467 deletions(-)
Title: Enhanced Foreign Function Interface Supporting Long Vectors
Description: Provides .C64(), which is an enhanced version of .C()
and .Fortran() from the foreign function interface. .C64() supports long
vectors, arguments of type 64-bit integer, and provides a mechanism to
avoid unnecessary copies of read-only and write-only arguments. This
makes it a convenient and fast interface to C/C++ and Fortran code.
Author: Kaspar Moesinger [aut],
Florian Gerber [cre, ctb],
Reinhard Furrer [ctb]
Maintainer: Florian Gerber <florian.gerber@math.uzh.ch>
Diff between dotCall64 versions 0.9-5 dated 2017-12-12 and 0.9-5.2 dated 2018-01-11
DESCRIPTION | 18 ++++++------- MD5 | 14 +++++----- NEWS.md | 8 +++++ R/dotCall64.R | 76 ++++++++++++++++++++++++++----------------------------- R/vector_dc.R | 15 +++++----- man/dotCall64.Rd | 74 ++++++++++++++++++++++++++--------------------------- man/vector_dc.Rd | 15 +++++----- src/dotCall64.c | 2 - 8 files changed, 110 insertions(+), 112 deletions(-)
Title: Manage Massive Matrices with Shared Memory and Memory-Mapped
Files
Description: Create, store, access, and manipulate massive matrices.
Matrices are allocated to shared memory and may use memory-mapped
files. Packages 'biganalytics', 'bigtabulate', 'synchronicity', and
'bigalgebra' provide advanced functionality.
Author: Michael J. Kane <kaneplusplus@gmail.com>, John W. Emerson
<jayemerson@gmail.com>, Peter Haverty <haverty.peter@gene.com>, and Charles
Determan Jr. <cdetermanjr@gmail.com>
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between bigmemory versions 4.5.30 dated 2017-11-20 and 4.5.33 dated 2018-01-11
DESCRIPTION | 14 MD5 | 22 R/bigmemory.R | 868 ++++++++++++++++++--------------------- R/hello-bigmemory.R | 2 build/vignette.rds |binary inst/doc/Overview.pdf |binary man/bigmemory-package.Rd | 2 man/extract-methods.Rd | 6 man/print-big.matrix-method.Rd | 2 man/write.big.matrix.Rd | 2 src/bigmemory.cpp | 5 tests/testthat/test_assignment.R | 8 12 files changed, 450 insertions(+), 481 deletions(-)
Title: Bayesian Survival Regression with Flexible Error and Random
Effects Distributions
Description: Contains Bayesian implementations of Mixed-Effects Accelerated Failure Time (MEAFT) models
for censored data. Those can be not only right-censored but also interval-censored,
doubly-interval-censored or misclassified interval-censored.
Author: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Maintainer: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Diff between bayesSurv versions 3.1 dated 2017-09-24 and 3.2 dated 2018-01-11
CHANGES | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- src/Gspline.cpp | 3 ++- src/classCovMatrix.cpp | 3 ++- src/classRandomEff.cpp | 3 ++- 6 files changed, 19 insertions(+), 12 deletions(-)
Title: Allele Retention, Inbreeding, and Demography
Description: Simulate the effect of management or demography on allele retention and inbreeding accumulation in bottlenecked populations of animals with overlapping generations.
Author: Emily L. Weiser
Maintainer: Emily Weiser <emily.l.weiser@gmail.com>
Diff between AlleleRetain versions 1.3.4 dated 2017-08-15 and 2.0.2 dated 2018-01-11
AlleleRetain-1.3.4/AlleleRetain/inst/doc/AlleleRetain_User_Guide.pdf |only AlleleRetain-2.0.2/AlleleRetain/DESCRIPTION | 12 AlleleRetain-2.0.2/AlleleRetain/MD5 | 22 AlleleRetain-2.0.2/AlleleRetain/NAMESPACE | 4 AlleleRetain-2.0.2/AlleleRetain/R/AlleleRetain.R | 370 +++++++--- AlleleRetain-2.0.2/AlleleRetain/inst/CITATION | 2 AlleleRetain-2.0.2/AlleleRetain/inst/doc/AlleleRetain2.0_User_Guide.pdf |only AlleleRetain-2.0.2/AlleleRetain/man/AlleleRetain-package.Rd | 2 AlleleRetain-2.0.2/AlleleRetain/man/LRS.summary.Rd |only AlleleRetain-2.0.2/AlleleRetain/man/aRetain.Rd | 99 ++ AlleleRetain-2.0.2/AlleleRetain/man/aRetain.summary.Rd | 6 AlleleRetain-2.0.2/AlleleRetain/man/agerepro.summary.Rd |only AlleleRetain-2.0.2/AlleleRetain/man/indiv.summary.Rd | 11 AlleleRetain-2.0.2/AlleleRetain/man/pedigree.summary.Rd | 9 14 files changed, 381 insertions(+), 156 deletions(-)
Title: Two-/Three-Stage Designs for Phase 1&2 Clinical Trials
Description: Calculate optimal Zhong's two-/three-stage Phase II designs (see Zhong (2012) <doi:10.1016/j.cct.2012.07.006>). Generate Target Toxicity decision table for Phase I dose-finding (Two-/three-stage). This package also allows users to run dose-finding simulations based on customized decision table.
Author: Wenchuan Guo, Bob Zhong
Maintainer: Wenchuan Guo <wguo007@ucr.edu>
Diff between tsdf versions 1.1-2 dated 2017-09-06 and 1.1-4 dated 2018-01-11
DESCRIPTION | 10 MD5 | 52 +- NAMESPACE | 31 - NEWS | 152 +++--- R/dec.sim.R | 256 +++++------ R/dec.table.R | 171 +++---- R/internal.R | 847 ++++++++++++++++++------------------ R/opt.design.R | 154 +++--- R/sl.sim.R | 86 +-- R/utility.R | 552 ++++++++++++----------- README.md | 34 - build/vignette.rds |binary inst/doc/my-vignette.R | 186 ++++---- inst/doc/my-vignette.Rmd | 297 ++++++------ inst/doc/my-vignette.html | 1060 +++++++++++++++++++++------------------------- inst/extdata/decTable.csv | 24 - inst/extdata/testS.csv | 6 man/dec.sim.Rd | 97 ++-- man/dec.table.Rd | 118 ++--- man/opt.design.Rd | 150 +++--- man/plot.dec.sim.Rd | 86 +-- man/plot.dec.table.Rd | 48 +- man/print.dec.table.Rd | 44 - man/print.opt.design.Rd | 50 +- man/sl.sim.Rd | 90 +-- man/summary.dec.sim.Rd | 56 +- vignettes/my-vignette.Rmd | 297 ++++++------ 27 files changed, 2456 insertions(+), 2498 deletions(-)
Title: Particle Tracking and Demography
Description: Obtain population density and body size structure, using video material or image sequences as input. Functions assist in the creation of image sequences from videos, background detection and subtraction, particle identification and tracking. An artificial neural network can be trained for noise filtering. The goal is to supply accurate estimates of population size, structure and/or individual behavior, for use in evolutionary and ecological studies.
Author: Marjolein Bruijning, Marco D. Visser, Caspar A. Hallmann, Eelke Jongejans
Maintainer: Marjolein Bruijning <m.bruijning@science.ru.nl>
Diff between trackdem versions 0.3 dated 2017-11-29 and 0.3.1 dated 2018-01-11
DESCRIPTION | 12 +++++++----- MD5 | 27 +++++++++++++++++++++------ R/identifyFunctions.R | 45 +++++++++++++++++++++++---------------------- R/nnFunctions.R | 4 ++-- R/resultsFunctions.R | 10 +++++----- R/simulationFunctions.R | 3 ++- R/trackFunctions.R | 6 +++--- build |only inst/doc |only vignettes |only 10 files changed, 63 insertions(+), 44 deletions(-)
Title: Labelled Data Utility Functions
Description: Collection of functions dealing with labelled data, like reading and
writing data between R and other statistical software packages like 'SPSS',
'SAS' or 'Stata', and working with labelled data. This includes easy ways
to get, set or change value and variable label attributes, to convert
labelled vectors into factors or numeric (and vice versa), or to deal with
multiple declared missing values.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjlabelled versions 1.0.5 dated 2017-11-09 and 1.0.6 dated 2018-01-11
DESCRIPTION | 14 MD5 | 78 +- NAMESPACE | 189 +++--- NEWS.md | 9 R/convert_case.R |only R/get_model_labels.R | 426 +++++++------- R/helpfunctions.R | 17 R/tidiers.R | 260 ++++---- build/vignette.rds |binary inst/doc/intro_sjlabelled.R | 578 +++++++++---------- inst/doc/intro_sjlabelled.html | 1224 ++++++++++++++++++++--------------------- inst/doc/labelleddata.R | 90 +-- inst/doc/labelleddata.html | 392 ++++++------- man/add_labels.Rd | 240 ++++---- man/as_factor.Rd | 172 ++--- man/as_label.Rd | 290 ++++----- man/as_labelled.Rd | 112 +-- man/as_numeric.Rd | 202 +++--- man/convert_case.Rd |only man/copy_labels.Rd | 84 +- man/efc.Rd | 64 +- man/get_label.Rd | 180 +++--- man/get_labels.Rd | 334 +++++------ man/get_na.Rd | 124 ++-- man/get_note.Rd | 74 +- man/get_term_labels.Rd | 143 ++-- man/get_values.Rd | 122 ++-- man/is_labelled.Rd | 36 - man/lbl_df.Rd | 72 +- man/read_spss.Rd | 144 ++-- man/reexports.Rd | 32 - man/remove_all_labels.Rd | 64 +- man/set_label.Rd | 224 +++---- man/set_labels.Rd | 344 +++++------ man/set_note.Rd | 74 +- man/tidy_labels.Rd | 106 +-- man/type_sum.Rd | 34 - man/unlabel.Rd | 54 - man/write_spss.Rd | 72 +- man/zap_labels.Rd | 278 ++++----- man/zap_na_tags.Rd | 84 +- 41 files changed, 3544 insertions(+), 3492 deletions(-)
Title: Fast Truncated Singular Value Decomposition and Principal
Components Analysis for Large Dense and Sparse Matrices
Description: Fast and memory efficient methods for truncated singular value
decomposition and principal components analysis of large sparse and dense matrices.
Author: Jim Baglama [aut, cph],
Lothar Reichel [aut, cph],
B. W. Lewis [aut, cre, cph]
Maintainer: B. W. Lewis <blewis@illposed.net>
Diff between irlba versions 2.3.1 dated 2017-10-18 and 2.3.2 dated 2018-01-11
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- R/eigen.R | 2 +- R/irlba.R | 29 ++++++++++++++++------------- R/prcomp.R | 36 ++++++++++++++++++++++++++---------- R/ssvd.R | 25 +++++++++++++++++++------ R/svdr.R | 5 ++++- R/utility.R | 15 +++++++++++---- README.md | 26 ++++++++++++++++++-------- build/vignette.rds |binary inst/doc/irlba.pdf |binary man/irlba.Rd | 2 +- man/ssvd.Rd | 8 ++++++-- src/irlb.c | 20 +++++++++++--------- src/utility.c | 1 - tests/edge.R | 13 +++++++++++++ tests/prcomp.r | 48 +++++++++++++++++++++++++++++++++++++++++++++++- 17 files changed, 193 insertions(+), 77 deletions(-)
Title: Data Preparation During and After the Use of the Experience
Sampling Methodology (ESM)
Description: Support in preparing a raw ESM dataset for statistical analysis. Preparation includes the handling of errors (mostly due to technological reasons) and the generating of new variables that are necessary and/or helpful in meeting the conditions when statistically analyzing ESM data. The functions in 'esmprep' are meant to hierarchically lead from bottom, i.e. the raw (separated) ESM dataset(s), to top, i.e. a single ESM dataset ready for statistical analysis. This hierarchy evolved out of my personal experience in working with ESM data.
Author: Marcel Miché <esmprep@gmail.com>
Maintainer: Marcel Miché <esmprep@gmail.com>
Diff between esmprep versions 0.1.0 dated 2017-08-30 and 0.1.3 dated 2018-01-11
DESCRIPTION | 6 +- MD5 | 34 +++++++-------- R/computeTimeBetween.R | 7 ++- R/dateTimeFormats.R | 2 R/dateTimeFormats2.R | 2 R/esAssign.R | 6 ++ R/esComplete.R | 2 R/esIdentical.R | 2 R/esList.R | 16 ++++++- R/genDateTime.R | 19 ++------ R/intolerable.R | 2 R/overallCounter.R | 9 +++ R/relevantESVN.R | 6 +- R/setES.R | 16 +++---- R/splitDateTime.R | 111 ++++++++++++++++++++++--------------------------- man/esIdentical.Rd | 2 man/relevantESVN.Rd | 2 man/setES.Rd | 2 18 files changed, 127 insertions(+), 119 deletions(-)
Title: Matrix Exponential using Krylov Subspace Routines
Description: Implements functions from 'EXPOKIT'
(<https://www.maths.uq.edu.au/expokit/>) to calculate
matrix exponentials, Sidje RB, (1998) <doi:10.1145/285861.285868>.
Includes functions for small dense matrices along with functions
for large sparse matrices. The functions for large sparse matrices
implement Krylov subspace methods which help minimise the
computational complexity for matrix exponentials. 'Kexpmv' can be
utilised to calculate both the matrix exponential in isolation
along with the product of the matrix exponential and a vector.
Author: Meabh G. McCurdy <mmccurdy01@qub.ac.uk>
Maintainer: Meabh G. McCurdy <mmccurdy01@qub.ac.uk>
Diff between kexpmv versions 0.0.2 dated 2018-01-11 and 0.0.3 dated 2018-01-11
kexpmv-0.0.2/kexpmv/inst/notes/CRAN-comments-11Dec2017.txt |only kexpmv-0.0.3/kexpmv/DESCRIPTION | 6 kexpmv-0.0.3/kexpmv/MD5 | 13 kexpmv-0.0.3/kexpmv/NEWS | 4 kexpmv-0.0.3/kexpmv/R/kexpmv.R | 2 kexpmv-0.0.3/kexpmv/src/blas_mod.f | 378 --- kexpmv-0.0.3/kexpmv/src/lapack.f | 1631 ------------- kexpmv-0.0.3/kexpmv/src/mataid.f | 746 ----- 8 files changed, 12 insertions(+), 2768 deletions(-)
Title: Analysis of Stable Matchings
Description: Implements structural estimators to correct for
the sample selection bias from observed outcomes in matching
markets. This includes one-sided matching of agents into
groups as well as two-sided matching of students to schools.
The package also contains algorithms to find stable matchings
in the three most common matching problems: the stable roommates
problem, the college admissions problem, and the house
allocation problem.
Author: Thilo Klein
Maintainer: Thilo Klein <thilo@klein.uk>
Diff between matchingMarkets versions 0.3-3 dated 2017-03-26 and 0.3-4 dated 2018-01-11
matchingMarkets-0.3-3/matchingMarkets/src/matchingMarkets_init.c |only matchingMarkets-0.3-4/matchingMarkets/DESCRIPTION | 27 +-- matchingMarkets-0.3-4/matchingMarkets/MD5 | 73 +++++----- matchingMarkets-0.3-4/matchingMarkets/NAMESPACE | 5 matchingMarkets-0.3-4/matchingMarkets/R/RcppExports.R | 12 - matchingMarkets-0.3-4/matchingMarkets/R/sri.R | 2 matchingMarkets-0.3-4/matchingMarkets/R/stabit.R | 20 +- matchingMarkets-0.3-4/matchingMarkets/R/stabit2.R | 6 matchingMarkets-0.3-4/matchingMarkets/README.md | 6 matchingMarkets-0.3-4/matchingMarkets/build/vignette.rds |binary matchingMarkets-0.3-4/matchingMarkets/data/baac00.RData |binary matchingMarkets-0.3-4/matchingMarkets/data/klein15a.RData |binary matchingMarkets-0.3-4/matchingMarkets/data/klein15b.RData |binary matchingMarkets-0.3-4/matchingMarkets/inst/doc/matching.Rnw | 12 - matchingMarkets-0.3-4/matchingMarkets/inst/doc/matching.pdf |binary matchingMarkets-0.3-4/matchingMarkets/inst/staticdocs |only matchingMarkets-0.3-4/matchingMarkets/man/hri.Rd | 8 - matchingMarkets-0.3-4/matchingMarkets/man/iaa.Rd | 8 - matchingMarkets-0.3-4/matchingMarkets/man/khb.Rd | 7 matchingMarkets-0.3-4/matchingMarkets/man/matchingMarkets-package.Rd | 2 matchingMarkets-0.3-4/matchingMarkets/man/mce.Rd | 1 matchingMarkets-0.3-4/matchingMarkets/man/plp.Rd | 7 matchingMarkets-0.3-4/matchingMarkets/man/predict.stabit2.Rd | 7 matchingMarkets-0.3-4/matchingMarkets/man/sri.Rd | 7 matchingMarkets-0.3-4/matchingMarkets/man/stabit.Rd | 8 - matchingMarkets-0.3-4/matchingMarkets/man/stabit2.Rd | 10 - matchingMarkets-0.3-4/matchingMarkets/man/stabsim.Rd | 1 matchingMarkets-0.3-4/matchingMarkets/man/stabsim2.Rd | 1 matchingMarkets-0.3-4/matchingMarkets/man/ttc.Rd | 7 matchingMarkets-0.3-4/matchingMarkets/src/RcppExports.cpp | 21 ++ matchingMarkets-0.3-4/matchingMarkets/src/stabit2Mat1.cpp | 1 matchingMarkets-0.3-4/matchingMarkets/src/stabit2Sel1.cpp | 1 matchingMarkets-0.3-4/matchingMarkets/src/stabit2Sel2.cpp | 1 matchingMarkets-0.3-4/matchingMarkets/src/stabitSel2.cpp | 1 matchingMarkets-0.3-4/matchingMarkets/vignettes/Sections/4_MonteCarloResults.Rnw | 6 matchingMarkets-0.3-4/matchingMarkets/vignettes/matching.Rnw | 12 - matchingMarkets-0.3-4/matchingMarkets/vignettes/matching.bib | 2 37 files changed, 134 insertions(+), 148 deletions(-)
More information about matchingMarkets at CRAN
Permanent link
Title: Fast Generators and Iterators for Permutations, Combinations and
Partitions
Description: Fast generators and iterators for permutations, combinations
and partitions. The iterators allow users to generate arrangements in
a memory efficient manner and the generated arrangements are in
lexicographical (dictionary) order. Permutations and combinations can
be drawn with/without replacement and support multisets. It has been
demonstrated that 'arrangements' outperforms most of the existing
packages of similar kind. Some benchmarks could be found at
<https://randy3k.github.io/arrangements/articles/benchmark.html>.
Author: Randy Lai [aut, cre]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between arrangements versions 1.0.0 dated 2018-01-10 and 1.0.1 dated 2018-01-11
DESCRIPTION | 8 +++--- MD5 | 32 ++++++++++++------------ NAMESPACE | 1 R/arrangements.R | 1 R/combinations.R | 42 ++++++++++++++------------------ R/partitions.R | 12 ++++----- R/permutations.R | 45 ++++++++++++++++------------------- man/combinations.Rd | 3 +- man/icombinations.Rd | 9 +++---- man/ipartitions.Rd | 6 ++-- man/ipermutations.Rd | 9 +++---- man/ncombinations.Rd | 3 +- man/npermutations.Rd | 3 +- man/partitions.Rd | 2 - man/permutations.Rd | 5 ++- tests/testthat/test_k_permutations.R | 2 - tests/testthat/test_permutations.R | 2 - 17 files changed, 92 insertions(+), 93 deletions(-)
Title: Bayesian Modeling and Analysis of Spatially Correlated Survival
Data
Description: Provides several Bayesian survival models for spatial/non-spatial survival data: proportional hazards (PH), accelerated failure time (AFT), proportional odds (PO), and accelerated hazards (AH), a super model that includes PH, AFT, PO and AH as special cases, Bayesian nonparametric nonproportional hazards (LDDPM), generalized accelerated failure time (GAFT), and spatially smoothed density estimation. The spatial dependence is modeled via frailties under PH, AFT, PO, AH and GAFT, and via copulas under LDDPM and PH. Model choice is carried out via LPML and DIC.
Author: Haiming Zhou <zhouh@niu.edu> and Timothy Hanson <hansont@stat.sc.edu>
Maintainer: Haiming Zhou <zhouh@niu.edu>
Diff between spBayesSurv versions 1.1.1 dated 2017-05-15 and 1.1.2 dated 2018-01-11
DESCRIPTION | 12 MD5 | 46 NAMESPACE | 74 - R/SpatDensReg.R |only R/anovaDDP.R | 525 +++++----- R/indeptCoxph.R | 1 R/spCopulaCoxph.R | 861 ++++++++--------- R/spCopulaDDP.R | 681 ++++++------- R/survregbayes.R | 2156 +++++++++++++++++++++++--------------------- R/survregbayes2.R | 1425 ++++++++++++++--------------- build/vignette.rds |binary inst/doc/spBayesSurv.pdf |binary man/SpatDensReg.Rd |only man/survregbayes.Rd | 3 src/spSurv_AFT_BP.cpp | 104 +- src/spSurv_AH_BP.cpp |only src/spSurv_BP_tools.cpp | 88 - src/spSurv_BP_tools.h | 42 src/spSurv_PHPOAFT_BP.cpp | 13 src/spSurv_PH_BP.cpp | 104 +- src/spSurv_PO_BP.cpp | 104 +- src/spSurv_SpatDens.cpp |only src/spSurv_common.cpp | 6 src/spSurv_common.h | 4 src/spSurv_spatialtools.cpp | 128 ++ src/spSurv_spatialtools.h | 31 26 files changed, 3483 insertions(+), 2925 deletions(-)
More information about DirectedClustering at CRAN
Permanent link
Title: Matrix Exponential using Krylov Subspace Routines
Description: Implements functions from 'EXPOKIT'
(<https://www.maths.uq.edu.au/expokit/>) to calculate
matrix exponentials, Sidje RB, (1998) <doi:10.1145/285861.285868>.
Includes functions for small dense matrices along with functions
for large sparse matrices. The functions for large sparse matrices
implement Krylov subspace methods which help minimise the
computational complexity for matrix exponentials. 'Kexpmv' can be
utilised to calculate both the matrix exponential in isolation
along with the product of the matrix exponential and a vector.
Author: Meabh G. McCurdy <mmccurdy01@qub.ac.uk>
Maintainer: Meabh G. McCurdy <mmccurdy01@qub.ac.uk>
Diff between kexpmv versions 0.0.1 dated 2017-12-19 and 0.0.2 dated 2018-01-11
DESCRIPTION | 6 MD5 | 20 NEWS | 6 R/kexpmv.R | 75 - README.md | 2 man/expokit_dgexpv.Rd | 4 man/expokit_dgpadm.Rd | 2 man/expokit_dmexpv.Rd | 2 man/kexpmv-package.Rd | 6 src/blas_mod.f | 1367 ------------------ src/my_expokit.f | 3612 -------------------------------------------------- 11 files changed, 42 insertions(+), 5060 deletions(-)
Title: Programming with Big Data -- Interface to ZeroMQ
Description: 'ZeroMQ' is a well-known library for high-performance
asynchronous messaging in scalable, distributed applications. This
package provides high level R wrapper functions to easily utilize
'ZeroMQ'. We mainly focus on interactive client/server programming
frameworks. For convenience, a minimal 'ZeroMQ' library (4.2.2)
is shipped with 'pbdZMQ', which can be used if no system installation
of 'ZeroMQ' is available. A few wrapper functions compatible with
'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Christian Heckendorf [aut] (file transfer),
George Ostrouchov [aut] (Mac OSX),
Whit Armstrong [ctb] (some functions are modified from the rzmq package
for backwards compatibility),
Brian Ripley [ctb] (C code of shellexec, and Solaris),
R Core team [ctb] (some functions are modified from the R source code),
Philipp A. [ctb] (Fedora),
Elliott Sales de Andrade [ctb] (sprintf),
Spencer Aiello [ctb] (windows conf)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdZMQ versions 0.3-0 dated 2018-01-04 and 0.3-1 dated 2018-01-11
ChangeLog | 9 ++++++++- DESCRIPTION | 16 ++++++++-------- MD5 | 8 ++++---- R/get_conf_zmq.r | 28 +++++++++++++++++++++------- src/install.libs.R | 4 ++-- 5 files changed, 43 insertions(+), 22 deletions(-)
Title: 'sf'-Compatible Interface to 'Google Maps' APIs
Description: Interface to the 'Google Maps' APIs: (1) routing directions based on the 'Directions' API, returned as 'sf' objects, either as single feature per alternative route, or a single feature per segment per alternative route; (2) travel distance or time matrices based on the 'Distance Matrix' API; (3) geocoded locations based on the 'Geocode' API, returned as 'sf' objects, either points or bounds.
Author: Michael Dorman [aut, cre]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between mapsapi versions 0.2.0 dated 2017-11-02 and 0.3.0 dated 2018-01-11
DESCRIPTION | 8 +-- MD5 | 18 ++++---- NEWS.md | 6 ++ R/mp_geocode.R | 116 ++++++++++++++++++++++++++++++++++++---------------- R/mp_get_points.R | 107 ++++++++++++++++++++++++----------------------- build/vignette.rds |binary inst/doc/intro.Rmd | 2 inst/doc/intro.html | 44 +++++++++---------- man/mp_geocode.Rd | 25 ++++++++++- vignettes/intro.Rmd | 2 10 files changed, 203 insertions(+), 125 deletions(-)
Title: High Throughput Sequencing of Stable Isotope Probing Data
Analysis
Description: Functions for analyzing high throughput sequencing
stable isotope probing (HTS-SIP) data.
Analyses include high resolution stable isotope probing (HR-SIP),
multi-window high resolution stable isotope probing (MW-HR-SIP),
and quantitative stable isotope probing (q-SIP).
Author: Nicholas Youngblut [aut, cre],
Samuel Barnett [ctb]
Maintainer: Nicholas Youngblut <nyoungb2@gmail.com>
Diff between HTSSIP versions 1.3.0 dated 2017-10-25 and 1.3.1 dated 2018-01-11
DESCRIPTION | 6 MD5 | 26 NEWS.md | 4 README.md | 4 build/vignette.rds |binary inst/CITATION | 24 inst/doc/BD_shifts.html | 690 ++++++++--------------- inst/doc/HTSSIP_intro.html | 598 ++++++-------------- inst/doc/HTSSIP_sim.html | 656 ++++++++-------------- inst/doc/MW_HR_SIP.html | 915 +++++++++++-------------------- inst/doc/beta_diversity_ordinations.html | 535 ++++++------------ inst/doc/heavy_SIP.html | 595 +++++++------------- inst/doc/qSIP.html | 605 +++++++------------- inst/doc/quant_incorp.html | 591 +++++++------------- 14 files changed, 1916 insertions(+), 3333 deletions(-)
Title: 'DRNG' on Intel CPUs with the 'RdRand' Instruction for R
Description: Make use of the hardware random number accessed by the 'RdRand'
instruction in recent Intel CPUs (Ivy Bridge and later).
'DRNG' is "Digital Random Number Generator".
Author: Ei-ji Nakama <nakama@com-one.com>, Junji NAKANO <nakanoj@ism.ac.jp>
Maintainer: Ei-ji Nakama <nakama@com-one.com>
Diff between Rrdrand versions 0.1-14 dated 2015-05-28 and 0.1-15 dated 2018-01-11
Changelog | 2 ++ DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- src/Rrdrand.c | 9 +++++++-- src/registerDynamicSymbol.c |only 5 files changed, 17 insertions(+), 9 deletions(-)
Title: Parametric Mortality Models, Life Tables and HMD
Description: Fit the most popular human mortality 'laws', and construct
full and abridge life tables given various input indices. A mortality
law is a parametric function that describes the dying-out process of
individuals in a population during a significant portion of their
life spans. For a comprehensive review of the most important mortality
laws see Tabeau (2001) <doi:10.1007/0-306-47562-6_1>.
An elegant function for downloading data from Human Mortality
Database <http://www.mortality.org> is provided as well.
Author: Marius D. Pascariu [aut, cre],
Vladimir Canudas-Romo [ctb]
Maintainer: Marius D. Pascariu <mpascariu@outlook.com>
Diff between MortalityLaws versions 1.2.0 dated 2017-12-08 and 1.3.0 dated 2018-01-11
MortalityLaws-1.2.0/MortalityLaws/R/fun_Laws.R |only MortalityLaws-1.2.0/MortalityLaws/R/fun_LifeTable.R |only MortalityLaws-1.2.0/MortalityLaws/R/fun_MortalityLaw.R |only MortalityLaws-1.2.0/MortalityLaws/R/fun_availableHMD.R |only MortalityLaws-1.2.0/MortalityLaws/R/fun_availableLF.R |only MortalityLaws-1.2.0/MortalityLaws/R/fun_availableLaws.R |only MortalityLaws-1.2.0/MortalityLaws/R/fun_data_and_imports.R |only MortalityLaws-1.2.0/MortalityLaws/R/fun_graphics.R |only MortalityLaws-1.2.0/MortalityLaws/R/fun_readHMD.R |only MortalityLaws-1.2.0/MortalityLaws/R/fun_utils.R |only MortalityLaws-1.3.0/MortalityLaws/DESCRIPTION | 6 MortalityLaws-1.3.0/MortalityLaws/MD5 | 176 +++++----- MortalityLaws-1.3.0/MortalityLaws/NAMESPACE | 7 MortalityLaws-1.3.0/MortalityLaws/NEWS | 4 MortalityLaws-1.3.0/MortalityLaws/R/LifeTable.R |only MortalityLaws-1.3.0/MortalityLaws/R/MortalityLaw_S3.R |only MortalityLaws-1.3.0/MortalityLaws/R/MortalityLaw_check.R |only MortalityLaws-1.3.0/MortalityLaws/R/MortalityLaw_main.R |only MortalityLaws-1.3.0/MortalityLaws/R/MortalityLaw_models.R |only MortalityLaws-1.3.0/MortalityLaws/R/availableHMD.R |only MortalityLaws-1.3.0/MortalityLaws/R/availableLF.R |only MortalityLaws-1.3.0/MortalityLaws/R/availableLaws.R |only MortalityLaws-1.3.0/MortalityLaws/R/data_and_imports.R |only MortalityLaws-1.3.0/MortalityLaws/R/graphics.R |only MortalityLaws-1.3.0/MortalityLaws/R/readHMD.R |only MortalityLaws-1.3.0/MortalityLaws/R/utils.R |only MortalityLaws-1.3.0/MortalityLaws/README.md |only MortalityLaws-1.3.0/MortalityLaws/THANKS | 5 MortalityLaws-1.3.0/MortalityLaws/build/vignette.rds |binary MortalityLaws-1.3.0/MortalityLaws/inst/doc/Installation.R | 8 MortalityLaws-1.3.0/MortalityLaws/inst/doc/Installation.Rmd | 32 + MortalityLaws-1.3.0/MortalityLaws/inst/doc/Installation.pdf |binary MortalityLaws-1.3.0/MortalityLaws/inst/doc/Manual.Rmd | 2 MortalityLaws-1.3.0/MortalityLaws/inst/doc/Manual.pdf |binary MortalityLaws-1.3.0/MortalityLaws/man/AIC.MortalityLaw.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/HMDcountries.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/HP.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/HP2.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/HP3.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/HP4.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/LifeTable.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/LifeTable.check.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/LifeTable.core.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/MortalityLaw.Rd | 6 MortalityLaws-1.3.0/MortalityLaws/man/ReadHMD.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/ReadHMD.core.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/ahmd.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/availableHMD.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/availableLF.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/availableLaws.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/beard.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/bring_parameters.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/carriere1.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/carriere2.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/check.MortalityLaw.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/check_input_ReadHMD.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/choose_optim.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/coale.demeny.ax.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/compute.ax.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/deviance.MortalityLaw.Rd |only MortalityLaws-1.3.0/MortalityLaws/man/df.residual.MortalityLaw.Rd |only MortalityLaws-1.3.0/MortalityLaws/man/find.my.case.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/gompertz.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/gompertz0.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/head_tail.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/invgompertz.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/invweibull.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/kannisto.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/kostaki.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/logLik.MortalityLaw.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/makeham.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/makeham0.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/makehambeard.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/martinelle.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/mx_qx.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/objective_fun.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/onAttach.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/opperman.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/perks.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/plot.MortalityLaw.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/predict.MortalityLaw.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/print.LifeTable.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/print.MortalityLaw.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/print.ReadHMD.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/print.availableHMD.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/print.availableLF.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/print.availableLaws.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/print.summary.MortalityLaw.Rd | 9 MortalityLaws-1.3.0/MortalityLaws/man/quadratic.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/rogersplanck.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/scale_x.Rd |only MortalityLaws-1.3.0/MortalityLaws/man/siler.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/summary.MortalityLaw.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/thiele.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/vandermaen.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/vandermaen2.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/weibull.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/man/wittstein.Rd | 2 MortalityLaws-1.3.0/MortalityLaws/tests/testthat/test_MortalityLaws.R | 14 MortalityLaws-1.3.0/MortalityLaws/tests/testthat/test_ReadHMD.R | 3 MortalityLaws-1.3.0/MortalityLaws/vignettes/Installation.Rmd | 32 + MortalityLaws-1.3.0/MortalityLaws/vignettes/Manual.Rmd | 2 102 files changed, 245 insertions(+), 179 deletions(-)