Title: Functions for Elementary Bayesian Inference
Description: A set of R functions and data sets for the book Introduction to Bayesian Statistics, Bolstad, W.M. (2017), John Wiley & Sons ISBN 978-1-118-09156-2.
Author: James Curran [aut, cre]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between Bolstad versions 0.2-34 dated 2017-03-30 and 0.2-35 dated 2018-01-17
DESCRIPTION | 8 MD5 | 134 +++---- NAMESPACE | 98 ++--- R/as.data.frame.Bolstad.R | 22 - R/bayes.lin.reg.r | 744 ++++++++++++++++++++-------------------- R/bayes.lm.R | 368 ++++++++++---------- R/bayes.t.gibbs.R | 242 ++++++------- R/bayes.t.test.R | 788 +++++++++++++++++++++---------------------- R/binobp.r | 208 +++++------ R/binomixp.r | 392 ++++++++++----------- R/cdf.R | 60 +-- R/createPrior.R | 20 - R/createPrior.default.R | 50 +- R/median.Bolstad.R | 38 +- R/mvnmvnp.R | 176 ++++----- R/normgcp.r | 430 +++++++++++------------ R/normmixp.r | 478 +++++++++++++------------- R/normnp.r | 266 +++++++------- R/nvaricp.r | 438 +++++++++++------------ R/poisgamp.r | 379 ++++++++++---------- R/poisgcp.r | 410 +++++++++++----------- R/print.Bolstad.R | 70 +-- R/print.sscamp.R | 54 +- R/print.summary.Bolstad.R | 96 ++--- R/quantile.Bolstad.R | 38 +- R/sd.R | 88 ++-- R/sscsample.r | 376 ++++++++++---------- R/summary.Bolstad.R | 74 ++-- R/var.R | 46 +- man/Bolstad-package.Rd | 54 +- man/IQR.Rd | 48 +- man/as.data.frame.Bolstad.Rd | 32 - man/bayes.lin.reg.Rd | 206 +++++------ man/bayes.lm.Rd | 240 ++++++------- man/bayes.t.test.Rd | 262 +++++++------- man/bears.Rd | 96 ++--- man/binobp.Rd | 124 +++--- man/binodp.Rd | 154 ++++---- man/binogcp.Rd | 188 +++++----- man/binomixp.Rd | 162 ++++---- man/cdf.Rd | 68 +-- man/createPrior.Rd | 40 +- man/createPrior.default.Rd | 46 +- man/decomp.Rd | 78 ++-- man/lines.Bolstad.Rd | 34 - man/mean.Bolstad.Rd | 76 ++-- man/mvnmvnp.Rd | 72 +-- man/normdp.Rd | 134 +++---- man/normgcp.Rd | 248 ++++++------- man/normmixp.Rd | 134 +++---- man/normnp.Rd | 132 +++---- man/nvaricp.Rd | 116 +++--- man/plot.Bolstad.Rd | 132 +++---- man/poisdp.Rd | 138 +++---- man/poisgamp.Rd | 163 ++++---- man/poisgcp.Rd | 216 +++++------ man/print.Bolstad.Rd | 58 +-- man/print.sscsamp.Rd | 52 +- man/quantile.Bolstad.Rd | 46 +- man/sd.Bolstad.Rd | 84 ++-- man/sd.Rd | 32 - man/sintegral.Rd | 128 +++--- man/slug.Rd | 58 +-- man/sscsample.Rd | 116 +++--- man/sscsample.data.Rd | 54 +- man/summary.Bolstad.Rd | 42 +- man/var.Rd | 32 - man/xdesign.Rd | 106 ++--- 68 files changed, 5401 insertions(+), 5391 deletions(-)
Title: Use 'Python' from Within 'R'
Description: Interact with 'Python' <https://www.python.org/> from within 'R'.
Author: Florian Schwendinger [aut, cre],
Kimyen Truong [ctb]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between PythonInR versions 0.1-3 dated 2015-11-19 and 0.1-4 dated 2018-01-17
PythonInR-0.1-3/PythonInR/R/PythonFunctions.R |only PythonInR-0.1-3/PythonInR/src/PythonFunctions.c |only PythonInR-0.1-3/PythonInR/src/PythonFunctions.h |only PythonInR-0.1-4/PythonInR/ChangeLog | 11 PythonInR-0.1-4/PythonInR/DESCRIPTION | 19 PythonInR-0.1-4/PythonInR/MD5 | 98 - PythonInR-0.1-4/PythonInR/NAMESPACE | 3 PythonInR-0.1-4/PythonInR/R/PyGet.R | 2 PythonInR-0.1-4/PythonInR/R/PyObject.R | 14 PythonInR-0.1-4/PythonInR/R/PyOptions.R | 10 PythonInR-0.1-4/PythonInR/R/PythonInR.R | 112 - PythonInR-0.1-4/PythonInR/R/TransformReturnValues.R | 2 PythonInR-0.1-4/PythonInR/README.md | 8 PythonInR-0.1-4/PythonInR/configure | 26 PythonInR-0.1-4/PythonInR/inst/testing/PyExec.R | 1 PythonInR-0.1-4/PythonInR/inst/testing/PyGetSet.R | 4 PythonInR-0.1-4/PythonInR/inst/testing/PyObject.R | 4 PythonInR-0.1-4/PythonInR/inst/testing/PyOptions.R | 7 PythonInR-0.1-4/PythonInR/inst/testing/all.R | 9 PythonInR-0.1-4/PythonInR/man/BEGIN.Python.Rd | 5 PythonInR-0.1-4/PythonInR/man/autodetectPython.Rd | 5 PythonInR-0.1-4/PythonInR/man/pyAttach.Rd | 13 PythonInR-0.1-4/PythonInR/man/pyCall.Rd | 13 PythonInR-0.1-4/PythonInR/man/pyConnect.Rd | 39 PythonInR-0.1-4/PythonInR/man/pyDict.Rd | 11 PythonInR-0.1-4/PythonInR/man/pyDir.Rd | 5 PythonInR-0.1-4/PythonInR/man/pyExec.Rd | 5 PythonInR-0.1-4/PythonInR/man/pyExecfile.Rd | 7 PythonInR-0.1-4/PythonInR/man/pyExecg.Rd | 23 PythonInR-0.1-4/PythonInR/man/pyExecp.Rd | 15 PythonInR-0.1-4/PythonInR/man/pyExit.Rd | 3 PythonInR-0.1-4/PythonInR/man/pyFunction.Rd | 12 PythonInR-0.1-4/PythonInR/man/pyGet.Rd | 13 PythonInR-0.1-4/PythonInR/man/pyGet0.Rd | 5 PythonInR-0.1-4/PythonInR/man/pyHelp.Rd | 3 PythonInR-0.1-4/PythonInR/man/pyImport.Rd | 19 PythonInR-0.1-4/PythonInR/man/pyIsConnected.Rd | 3 PythonInR-0.1-4/PythonInR/man/pyList.Rd | 9 PythonInR-0.1-4/PythonInR/man/pyObject.Rd | 7 PythonInR-0.1-4/PythonInR/man/pyOptions.Rd | 7 PythonInR-0.1-4/PythonInR/man/pyPrint.Rd | 9 PythonInR-0.1-4/PythonInR/man/pySet.Rd | 17 PythonInR-0.1-4/PythonInR/man/pyTuple.Rd | 7 PythonInR-0.1-4/PythonInR/man/pyType.Rd | 3 PythonInR-0.1-4/PythonInR/man/pyVersion.Rd | 3 PythonInR-0.1-4/PythonInR/src/CastPyObjects.c | 1146 +++++++--------- PythonInR-0.1-4/PythonInR/src/CastPyObjects.h | 10 PythonInR-0.1-4/PythonInR/src/PythonInR.c | 55 PythonInR-0.1-4/PythonInR/src/PythonInR.h | 9 PythonInR-0.1-4/PythonInR/src/PythonInRMacros.h | 6 PythonInR-0.1-4/PythonInR/src/Python_Explicit_Linking.h | 13 PythonInR-0.1-4/PythonInR/src/init.c |only 52 files changed, 933 insertions(+), 897 deletions(-)
Title: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Description: Note, that the 'PMCMR' package is superseded
by the novel 'PMCMRplus' package. The PMCMRplus
package contains all functions from
'PMCMR' and many more parametric and non-parametric
multiple comparison procedures, one-factorial trend
tests, as well as improved method functions,
such as print, summary and plot.
The 'PMCMR' package is no longer maintained,
but kept for compatibility of reverse depending
packages for some time.
Author: Thorsten Pohlert
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between PMCMR versions 4.1 dated 2016-01-06 and 4.2 dated 2018-01-17
DESCRIPTION | 33 - MD5 | 13 R/zzz.R |only build/vignette.rds |binary inst/CITATION | 2 inst/doc/PMCMR.Rnw | 1336 ++++++++++++++++++++++++++-------------------------- inst/doc/PMCMR.pdf |binary vignettes/PMCMR.Rnw | 1336 ++++++++++++++++++++++++++-------------------------- 8 files changed, 1358 insertions(+), 1362 deletions(-)
Title: Furniture for Quantitative Scientists
Description: Contains three main functions (i.e., three pieces of furniture):
table1() which produces a well-formatted table of descriptives common as Table 1
in research articles, tableC() which produces a well-formatted table of correlations,
and washer() which is helpful in cleaning up the data. In addition,
long() and wide(), built on the stats::reshape(), can help reformat the data.
These furniture functions are designed to simplify common tasks in
quantitative analysis. Other data summary and cleaning tools are also available.
Author: Tyson S. Barrett [aut, cre] (0000-0002-2137-1391),
Emily Brignone [aut],
Daniel J. Laxman [aut]
Maintainer: Tyson S. Barrett <t.barrett@aggiemail.usu.edu>
Diff between furniture versions 1.7.2 dated 2017-11-10 and 1.7.3 dated 2018-01-17
DESCRIPTION | 8 - MD5 | 35 ++--- NAMESPACE | 2 NEWS.md | 7 + R/Table1.R | 4 R/furniture.R | 3 R/rowmeans.R |only R/tableF.R | 23 +++ R/tableX.R | 23 +++ R/zzz.R | 2 build/vignette.rds |binary inst/doc/Furniture.html | 292 +++++++++++++++++++++---------------------- inst/doc/Table1.html | 6 man/furniture.Rd | 3 man/rowmeans.Rd |only man/rowsums.Rd |only man/table1.Rd | 4 man/tableF.Rd | 24 +++ man/tableX.Rd | 23 +++ tests/testthat/test_table1.R | 10 - 20 files changed, 292 insertions(+), 177 deletions(-)
Title: Utilities for Working with Air Quality Monitoring Data
Description: Utilities for working with air quality monitoring data
with a focus on small particulates (PM2.5) generated by wildfire
smoke. Functions are provided for downloading available data from
the United States 'EPA' <https://www.epa.gov/outdoor-air-quality-data> and
it's 'AirNow' air quality site <https://www.airnow.gov>.
Additional sources of PM2.5 data made accessible by the package include:
'AIRSIS' (password protected) <https://www.oceaneering.com/data-management/>
and 'WRCC' <https://wrcc.dri.edu/cgi-bin/smoke.pl>.
Pre-generated data compilations are provided by 'PWFSL'
<https://www.fs.fed.us/pnw/pwfsl/>.
Author: Jonathan Callahan [aut, cre],
Rohan Aras [aut],
Zach Dingels [aut],
Jon Hagg [aut],
Jimin Kim [aut],
Helen Miller [aut],
Rex Thompson [aut],
Alice Yang [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between PWFSLSmoke versions 1.0.7 dated 2018-01-12 and 1.0.10 dated 2018-01-17
PWFSLSmoke-1.0.10/PWFSLSmoke/DESCRIPTION | 21 +- PWFSLSmoke-1.0.10/PWFSLSmoke/MD5 | 98 +++++----- PWFSLSmoke-1.0.10/PWFSLSmoke/NAMESPACE | 4 PWFSLSmoke-1.0.10/PWFSLSmoke/R/PWFSLSmoke.R | 14 - PWFSLSmoke-1.0.10/PWFSLSmoke/R/airnow_load.R | 20 +- PWFSLSmoke-1.0.10/PWFSLSmoke/R/airnow_loadDaily.R |only PWFSLSmoke-1.0.10/PWFSLSmoke/R/airnow_loadLatest.R | 72 +++++-- PWFSLSmoke-1.0.10/PWFSLSmoke/R/airnow_qualityControl.R | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/R/airsisDump_createMonitorObject.R | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/R/airsis_createMonitorObject.R | 1 PWFSLSmoke-1.0.10/PWFSLSmoke/R/airsis_load.R | 11 - PWFSLSmoke-1.0.10/PWFSLSmoke/R/airsis_loadDaily.R |only PWFSLSmoke-1.0.10/PWFSLSmoke/R/airsis_loadLatest.R | 28 +- PWFSLSmoke-1.0.10/PWFSLSmoke/R/epa_createDataDataframe.R | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/R/epa_createMetaDataframe.R | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/R/epa_load.R | 10 - PWFSLSmoke-1.0.10/PWFSLSmoke/R/epa_parseData.R | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/R/monitor_trim.R | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/R/openaq_createDataDataframes.R | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/R/openaq_createMetaDataframes.R | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/R/openaq_downloadData.R | 4 PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrccDump_createMonitorObject.R | 4 PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_EBAMQualityControl.R | 8 PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_ESAMQualityControl.R | 8 PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_createDataDataframe.R | 4 PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_createMetaDataframe.R | 4 PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_createMonitorObject.R | 3 PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_createRawDataframe.R | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_downloadData.R | 26 +- PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_identifyMonitorType.R | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_load.R |only PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_loadDaily.R |only PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_loadLatest.R | 28 +- PWFSLSmoke-1.0.10/PWFSLSmoke/R/wrcc_parseData.R | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/data/WRCC.RData |binary PWFSLSmoke-1.0.10/PWFSLSmoke/inst/doc/Maps_and_Timeseries_Plots.html | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/man/AIRSIS.Rd | 3 PWFSLSmoke-1.0.10/PWFSLSmoke/man/WRCC.Rd | 11 - PWFSLSmoke-1.0.10/PWFSLSmoke/man/airnow_load.Rd | 10 - PWFSLSmoke-1.0.10/PWFSLSmoke/man/airnow_loadDaily.Rd |only PWFSLSmoke-1.0.10/PWFSLSmoke/man/airnow_loadLatest.Rd | 29 ++ PWFSLSmoke-1.0.10/PWFSLSmoke/man/airnow_qualityControl.Rd | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/man/airsis_createMonitorObject.Rd | 1 PWFSLSmoke-1.0.10/PWFSLSmoke/man/airsis_load.Rd | 5 PWFSLSmoke-1.0.10/PWFSLSmoke/man/airsis_loadDaily.Rd |only PWFSLSmoke-1.0.10/PWFSLSmoke/man/airsis_loadLatest.Rd | 17 + PWFSLSmoke-1.0.10/PWFSLSmoke/man/monitor_trim.Rd | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/man/wrcc_createMonitorObject.Rd | 1 PWFSLSmoke-1.0.10/PWFSLSmoke/man/wrcc_identifyMonitorType.Rd | 2 PWFSLSmoke-1.0.10/PWFSLSmoke/man/wrcc_load.Rd |only PWFSLSmoke-1.0.10/PWFSLSmoke/man/wrcc_loadDaily.Rd |only PWFSLSmoke-1.0.10/PWFSLSmoke/man/wrcc_loadLatest.Rd | 16 + PWFSLSmoke-1.0.10/PWFSLSmoke/man/wrcc_parseData.Rd | 2 PWFSLSmoke-1.0.7/PWFSLSmoke/R/airsis_currentData.R |only PWFSLSmoke-1.0.7/PWFSLSmoke/R/airsis_currentStatus.R |only 55 files changed, 318 insertions(+), 175 deletions(-)
Title: R Interface to 'Keras'
Description: Interface to 'Keras' <https://keras.io>, a high-level neural
networks 'API'. 'Keras' was developed with a focus on enabling fast experimentation,
supports both convolution based networks and recurrent networks (as well as
combinations of the two), and runs seamlessly on both 'CPU' and 'GPU' devices.
Author: JJ Allaire [aut, cre],
François Chollet [aut, cph],
RStudio [ctb, cph, fnd],
Google [ctb, cph, fnd],
Yuan Tang [ctb, cph],
Daniel Falbel [ctb, cph],
Wouter Van Der Bijl [ctb, cph],
Martin Studer [ctb, cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between keras versions 2.1.2 dated 2017-12-17 and 2.1.3 dated 2018-01-17
DESCRIPTION | 8 - MD5 | 38 ++++----- NEWS.md | 16 +++ R/layer-methods.R | 2 R/model-persistence.R | 78 +++++++++++++------ R/model.R | 9 ++ R/optimizers.R | 3 R/package.R | 24 +---- R/preprocessing.R | 71 ++++++++++------- inst/doc/backend.Rmd | 4 inst/doc/backend.html | 3 inst/doc/faq.Rmd | 3 inst/doc/faq.html | 4 man/export_savedmodel.keras.engine.training.Model.Rd | 10 +- man/generator_next.Rd | 2 man/get_input_at.Rd | 2 man/optimizer_nadam.Rd | 2 tests/testthat/test-model-persistence.R | 14 ++- vignettes/backend.Rmd | 4 vignettes/faq.Rmd | 3 20 files changed, 184 insertions(+), 116 deletions(-)
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through matching, weighting or subclassification, for example, using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal', and 'WeightIt' for assessing balance on the output of their preprocessing functions. Users can also specify data for balance assessment not generated through the above packages. Also included are methods for assessing balance in clustered or multiply imputed data sets.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between cobalt versions 3.1.0 dated 2017-11-12 and 3.2.0 dated 2018-01-17
cobalt-3.1.0/cobalt/inst/doc/cobalt_basic_use.R |only cobalt-3.1.0/cobalt/inst/doc/cobalt_basic_use.Rmd |only cobalt-3.1.0/cobalt/inst/doc/cobalt_basic_use.html |only cobalt-3.1.0/cobalt/inst/doc/cobalt_cluster_imp.R |only cobalt-3.1.0/cobalt/inst/doc/cobalt_cluster_imp.Rmd |only cobalt-3.1.0/cobalt/inst/doc/cobalt_cluster_imp.html |only cobalt-3.1.0/cobalt/inst/doc/cobalt_other_packages.R |only cobalt-3.1.0/cobalt/inst/doc/cobalt_other_packages.Rmd |only cobalt-3.1.0/cobalt/inst/doc/cobalt_other_packages.html |only cobalt-3.1.0/cobalt/vignettes/cobalt_basic_use.Rmd |only cobalt-3.1.0/cobalt/vignettes/cobalt_cluster_imp.Rmd |only cobalt-3.1.0/cobalt/vignettes/cobalt_other_packages.Rmd |only cobalt-3.2.0/cobalt/DESCRIPTION | 19 cobalt-3.2.0/cobalt/MD5 | 84 cobalt-3.2.0/cobalt/NAMESPACE | 8 cobalt-3.2.0/cobalt/NEWS.md | 16 cobalt-3.2.0/cobalt/R/bal.plot.R | 148 + cobalt-3.2.0/cobalt/R/bal.tab.R | 696 +++++- cobalt-3.2.0/cobalt/R/functions_for_processing.R | 259 ++ cobalt-3.2.0/cobalt/R/love.plot.R | 180 + cobalt-3.2.0/cobalt/R/print.bal.tab.R | 255 ++ cobalt-3.2.0/cobalt/R/utilities.R | 47 cobalt-3.2.0/cobalt/R/x2base.R | 1052 +++++++--- cobalt-3.2.0/cobalt/build/vignette.rds |binary cobalt-3.2.0/cobalt/inst/doc/cobalt_A0_basic_use.R |only cobalt-3.2.0/cobalt/inst/doc/cobalt_A0_basic_use.Rmd |only cobalt-3.2.0/cobalt/inst/doc/cobalt_A0_basic_use.html |only cobalt-3.2.0/cobalt/inst/doc/cobalt_A1_other_packages.R |only cobalt-3.2.0/cobalt/inst/doc/cobalt_A1_other_packages.Rmd |only cobalt-3.2.0/cobalt/inst/doc/cobalt_A1_other_packages.html |only cobalt-3.2.0/cobalt/inst/doc/cobalt_A2_cluster_imp.R |only cobalt-3.2.0/cobalt/inst/doc/cobalt_A2_cluster_imp.Rmd |only cobalt-3.2.0/cobalt/inst/doc/cobalt_A2_cluster_imp.html |only cobalt-3.2.0/cobalt/inst/doc/cobalt_A3_longitudinal_treat.R |only cobalt-3.2.0/cobalt/inst/doc/cobalt_A3_longitudinal_treat.Rmd |only cobalt-3.2.0/cobalt/inst/doc/cobalt_A3_longitudinal_treat.html |only cobalt-3.2.0/cobalt/man/bal.plot.Rd | 33 cobalt-3.2.0/cobalt/man/bal.tab.CBPS.Rd | 44 cobalt-3.2.0/cobalt/man/bal.tab.Match.Rd | 25 cobalt-3.2.0/cobalt/man/bal.tab.Rd | 55 cobalt-3.2.0/cobalt/man/bal.tab.df.formula.Rd | 44 cobalt-3.2.0/cobalt/man/bal.tab.ebalance.Rd | 25 cobalt-3.2.0/cobalt/man/bal.tab.list.Rd |only cobalt-3.2.0/cobalt/man/bal.tab.matchit.Rd | 27 cobalt-3.2.0/cobalt/man/bal.tab.optmatch.Rd | 27 cobalt-3.2.0/cobalt/man/bal.tab.ps.Rd | 26 cobalt-3.2.0/cobalt/man/bal.tab.weightit.Rd | 126 - cobalt-3.2.0/cobalt/man/class-bal.tab.imp.Rd | 2 cobalt-3.2.0/cobalt/man/class-bal.tab.msm.Rd |only cobalt-3.2.0/cobalt/man/class-bal.tab.multi.Rd | 2 cobalt-3.2.0/cobalt/man/class-bal.tab.subclass.Rd | 2 cobalt-3.2.0/cobalt/man/get.w.Rd | 4 cobalt-3.2.0/cobalt/man/love.plot.Rd | 21 cobalt-3.2.0/cobalt/man/print.bal.tab.Rd | 49 cobalt-3.2.0/cobalt/vignettes/cobalt_A0_basic_use.Rmd |only cobalt-3.2.0/cobalt/vignettes/cobalt_A1_other_packages.Rmd |only cobalt-3.2.0/cobalt/vignettes/cobalt_A2_cluster_imp.Rmd |only cobalt-3.2.0/cobalt/vignettes/cobalt_A3_longitudinal_treat.Rmd |only 58 files changed, 2478 insertions(+), 798 deletions(-)
Title: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and
K-Medoids Clustering
Description: Gaussian mixture models, k-means, mini-batch-kmeans and k-medoids
clustering with the option to plot, validate, predict (new data) and estimate the
optimal number of clusters. The package takes advantage of 'RcppArmadillo' to
speed up the computationally intensive parts of the functions.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between ClusterR versions 1.0.9 dated 2017-11-30 and 1.1.0 dated 2018-01-17
DESCRIPTION | 8 +-- MD5 | 18 +++---- NEWS.md | 6 ++ R/clustering_functions.R | 2 build/vignette.rds |binary inst/doc/the_clusterR_package.html | 12 ++--- man/MiniBatchKmeans.Rd | 2 src/Makevars | 2 src/Makevars.win | 2 src/kmeans_miniBatchKmeans_GMM_Medoids.cpp | 69 +++++++++++++++++++++-------- 10 files changed, 81 insertions(+), 40 deletions(-)
Title: R Interface to 'TensorFlow'
Description: Interface to 'TensorFlow' <https://www.tensorflow.org/>,
an open source software library for numerical computation using data
flow graphs. Nodes in the graph represent mathematical operations,
while the graph edges represent the multidimensional data arrays
(tensors) communicated between them. The flexible architecture allows
you to deploy computation to one or more 'CPUs' or 'GPUs' in a desktop,
server, or mobile device with a single 'API'. 'TensorFlow' was originally
developed by researchers and engineers working on the Google Brain Team
within Google's Machine Intelligence research organization for the
purposes of conducting machine learning and deep neural networks research,
but the system is general enough to be applicable in a wide variety
of other domains as well.
Author: JJ Allaire [aut, cre],
RStudio [cph, fnd],
Yuan Tang [aut, cph],
Dirk Eddelbuettel [ctb, cph],
Nick Golding [ctb, cph],
Google Inc. [ctb, cph] (Examples and Tutorials)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between tensorflow versions 1.4.3 dated 2017-12-18 and 1.5 dated 2018-01-17
DESCRIPTION | 10 - MD5 | 25 +-- NAMESPACE | 107 ++++--------- R/estimator-generics.R | 44 ++++- R/generics.R | 228 ++++------------------------- R/package.R | 13 + R/save.R | 46 +++++ inst/examples/mnist/fully_connected_feed.R | 19 +- inst/examples/mnist/mnist_with_summaries.R | 14 - man/evaluate.Rd | 12 + man/export_savedmodel.Rd | 16 +- man/train.Rd | 10 + man/train_and_evaluate.Rd | 10 + tests/testthat/test-export-savedmodel.R |only 14 files changed, 246 insertions(+), 308 deletions(-)
Title: Bayesian LDA for Mixed-Membership Clustering Analysis
Description: Estimates the Bayesian LDA model for mixed-membership clustering based on different types of data
(i.e., Multinomial, Bernoulli, and Binomial entries). Albuquerque, Valle and Li (2017) <doi:10.13140/RG.2.2.34599.96164>.
Author: Pedro Albuquerque and Denis Valle and Daijiang Li
Maintainer: Pedro Albuquerque <pedroa@unb.br>
Diff between Rlda versions 0.2.2 dated 2017-08-08 and 0.2.3 dated 2018-01-17
DESCRIPTION | 11 MD5 | 33 NAMESPACE | 4 NEWS | 8 R/RcppExports.R | 38 R/Utils.R | 86 - R/register.R |only R/regressionLda.R |only R/rlda.R | 247 +++ build/vignette.rds |binary inst/doc/Rlda.pdf |binary man/fast_bernoulli.Rd |only man/lda_binomialVB.Rd |only src/BinomialVariational.cpp |only src/RcppExports.cpp | 88 + src/Rlda_init.c |only src/Utils.cpp | 2 src/aux1.cpp |only tests/BinomialVariationalTest.R |only tests/FastPresenceTest.R |only vignettes/bibliography.bib | 550 +++---- vignettes/jss.dtx | 2840 ++++++++++++++++++++-------------------- 22 files changed, 2137 insertions(+), 1770 deletions(-)
Title: Interpolation Methods
Description: Bivariate data interpolation on regular and irregular
grids, either linear or using splines are the main part of this
package. It is intended to provide FOSS replacement functions for
the ACM licensed akima::interp and tripack::tri.mesh functions.
Currently the piecewise linear interpolation part of akima::interp
(and also akima::interpp) is implemented in interp::interp, this
corresponds to the call akima::interp(..., linear=TRUE) which is the
default setting and covers most of akima::interp use cases in
depending packages. A re-implementation of Akimas spline
interpolation (akima::interp(..., linear=FALSE)) is currently under
development and will complete this package in a later
version. Estimators for partial derivatives are already available,
these are a prerequisite for the spline interpolation. The basic
part is currently a GPLed triangulation algorithm (sweep hull
algorithm by David Sinclair) providing the starting point for the
piecewise linear interpolator. As side effect this algorithm is also
used to provide replacements for the basic functions of the tripack
package which also suffer from the ACM restrictions. All functions
are designed to be backward compatible with their akima / tripack
counterparts.
Author: Albrecht Gebhardt [aut, cre, cph] (...),
Roger Bivand [aut],
David Sinclair [aut, cph]
Maintainer: Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Diff between interp versions 1.0-29 dated 2017-06-17 and 1.0-30 dated 2018-01-17
ChangeLog | 24 ++++++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/s_hull_pro.h | 10 +++++----- 4 files changed, 36 insertions(+), 12 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in van Hees and colleagues (2014) <doi: 10.1152/japplphysiol.00421.2014> and (2015) <doi: 10.1371/journal.pone.0142533>. The package has been developed and tested for binary data from 'GENEActiv' <https://www.activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <http://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com/product/ax3>. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Joe Heywood [ctb],
Evgeny Mirkes [ctb],
Severine Sabia [ctb],
Jairo H Migueles [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>
Diff between GGIR versions 1.5-12 dated 2017-08-08 and 1.5-16 dated 2018-01-17
DESCRIPTION | 10 +++---- MD5 | 36 ++++++++++++------------- R/RcppExports.R | 4 +- R/g.cwaread.R | 6 ++-- R/g.part3.R | 3 +- R/g.part5.R | 50 ++++++++++++++++++++++++++++++------ R/g.shell.GGIR.R | 11 ++++--- R/g.sib.det.R | 11 +++++-- R/g.wavread.R | 10 +++---- README.md | 2 - build/vignette.rds |binary inst/NEWS.Rd | 33 +++++++++++++++-------- inst/doc/GGIR.html | 18 ++++++------ man/GGIR-package.Rd | 40 ++++++++++++++-------------- man/g.part4.Rd | 5 ++- man/g.part5.Rd | 8 +++++ src/RcppExports.cpp | 4 +- src/init.c | 8 ++--- tests/testthat/test_chainof5parts.R | 6 ++-- 19 files changed, 163 insertions(+), 102 deletions(-)
Title: Generalized Simulated Annealing
Description: Performs search for global minimum of a very complex non-linear
objective function with a very large number of optima.
Author: Sylvain Gubian, Yang Xiang, Brian Suomela, Julia Hoeng, PMP SA.
Maintainer: Sylvain Gubian <DL.RSupport@pmi.com>
Diff between GenSA versions 1.1.6 dated 2016-02-15 and 1.1.7 dated 2018-01-17
DESCRIPTION | 14 +-- MD5 | 25 +++-- NAMESPACE | 1 NEWS | 95 ++++++++++++---------- R/GenSA.R | 213 +++++++++++++++++++++++++-------------------------- inst/CITATION | 4 man/GenSA-package.Rd | 2 man/GenSA.Rd | 6 + src/Caller.cpp | 10 +- src/Caller.h | 2 src/Engine.cpp | 6 - src/Engine.h | 9 +- src/Utils.h | 2 src/init.c |only 14 files changed, 211 insertions(+), 178 deletions(-)
Title: 'DataRobot' Predictive Modeling API
Description: For working with the 'DataRobot' predictive modeling platform's API <https://www.datarobot.com/>.
Author: Ron Pearson [aut], Zachary Deane-Mayer [aut], David Chudzicki [aut], Dallin Akagi [aut], Sergey Yurgenson [aut], Thakur Raj Anand [aut], Peter Hurford [aut]
Maintainer: Peter Hurford <api-maintainer@datarobot.com>
Diff between datarobot versions 2.7.1 dated 2017-09-20 and 2.8.0 dated 2018-01-17
datarobot-2.7.1/datarobot/R/FormatMixedList.R |only datarobot-2.7.1/datarobot/man/FormatMixedList.Rd |only datarobot-2.8.0/datarobot/DESCRIPTION | 14 datarobot-2.8.0/datarobot/MD5 | 337 +++++----- datarobot-2.8.0/datarobot/NAMESPACE | 28 datarobot-2.8.0/datarobot/NEWS | 39 + datarobot-2.8.0/datarobot/R/ApplySchema.R | 6 datarobot-2.8.0/datarobot/R/Blueprints.R | 147 +++- datarobot-2.8.0/datarobot/R/ConfusionChart.R |only datarobot-2.8.0/datarobot/R/ConnectToDataRobot.R | 61 + datarobot-2.8.0/datarobot/R/ConnectionViewer.R |only datarobot-2.8.0/datarobot/R/CreateFeaturelist.R | 38 + datarobot-2.8.0/datarobot/R/DataRobotRequests.R | 33 datarobot-2.8.0/datarobot/R/Deprecated.R | 2 datarobot-2.8.0/datarobot/R/DownloadPrimeCode.R | 3 datarobot-2.8.0/datarobot/R/Enums.R | 35 + datarobot-2.8.0/datarobot/R/FeatureImpact.R | 8 datarobot-2.8.0/datarobot/R/Features.R | 85 +- datarobot-2.8.0/datarobot/R/GetFeaturelist.R | 46 + datarobot-2.8.0/datarobot/R/GetPredictions.R | 64 + datarobot-2.8.0/datarobot/R/LiftChart.R | 10 datarobot-2.8.0/datarobot/R/ListFeaturelists.R | 58 + datarobot-2.8.0/datarobot/R/Models.R | 98 +- datarobot-2.8.0/datarobot/R/Partitions.R | 333 +++++---- datarobot-2.8.0/datarobot/R/PredictionDatasets.R | 60 + datarobot-2.8.0/datarobot/R/PrimeModels.R | 11 datarobot-2.8.0/datarobot/R/RatingTables.R |only datarobot-2.8.0/datarobot/R/ReasonCodes.R | 81 +- datarobot-2.8.0/datarobot/R/ReformatMetrics.R | 2 datarobot-2.8.0/datarobot/R/RequestPredictions.R | 2 datarobot-2.8.0/datarobot/R/RequestSampleSizeUpdate.R | 2 datarobot-2.8.0/datarobot/R/RocCurve.R | 8 datarobot-2.8.0/datarobot/R/SetupProject.R | 56 - 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datarobot-2.8.0/datarobot/inst/doc/IntroductionToDataRobot.Rmd | 113 ++- datarobot-2.8.0/datarobot/inst/doc/IntroductionToDataRobot.html | 36 - datarobot-2.8.0/datarobot/inst/doc/Multiclass.R |only datarobot-2.8.0/datarobot/inst/doc/Multiclass.Rmd |only datarobot-2.8.0/datarobot/inst/doc/Multiclass.html |only datarobot-2.8.0/datarobot/inst/doc/PartialDependence.R | 2 datarobot-2.8.0/datarobot/inst/doc/PartialDependence.Rmd | 4 datarobot-2.8.0/datarobot/inst/doc/PartialDependence.html | 8 datarobot-2.8.0/datarobot/inst/doc/RatingTables.R |only datarobot-2.8.0/datarobot/inst/doc/RatingTables.Rmd |only datarobot-2.8.0/datarobot/inst/doc/RatingTables.html |only datarobot-2.8.0/datarobot/inst/doc/ReasonCodeVignette.R | 88 +- datarobot-2.8.0/datarobot/inst/doc/ReasonCodeVignette.Rmd | 103 +-- datarobot-2.8.0/datarobot/inst/doc/ReasonCodeVignette.html | 237 ++++++- datarobot-2.8.0/datarobot/inst/doc/TimeSeries.R |only datarobot-2.8.0/datarobot/inst/doc/TimeSeries.Rmd |only datarobot-2.8.0/datarobot/inst/doc/TimeSeries.html |only datarobot-2.8.0/datarobot/inst/doc/TrainingPredictions.R |only datarobot-2.8.0/datarobot/inst/doc/TrainingPredictions.Rmd |only datarobot-2.8.0/datarobot/inst/doc/TrainingPredictions.html |only datarobot-2.8.0/datarobot/inst/doc/VariableImportance.R | 4 datarobot-2.8.0/datarobot/inst/doc/VariableImportance.Rmd | 6 datarobot-2.8.0/datarobot/inst/doc/VariableImportance.html | 10 datarobot-2.8.0/datarobot/inst/icons |only datarobot-2.8.0/datarobot/inst/rstudio |only datarobot-2.8.0/datarobot/man/BlueprintChartToGraphviz.Rd | 6 datarobot-2.8.0/datarobot/man/ConnectToDataRobot.Rd | 12 datarobot-2.8.0/datarobot/man/CreateDatetimePartitionSpecification.Rd | 36 + datarobot-2.8.0/datarobot/man/CreateFeaturelist.Rd | 2 datarobot-2.8.0/datarobot/man/CreateGroupPartition.Rd | 29 datarobot-2.8.0/datarobot/man/CreateModelingFeaturelist.Rd |only datarobot-2.8.0/datarobot/man/CreateRandomPartition.Rd | 34 - 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Title: Nonparametric and Stochastic Efficiency and Productivity
Analysis
Description: Provides a variety of tools for nonparametric and parametric efficiency measurement.
Author: Oleg Badunenko [aut, cre],
Yaryna Kolomiytseva [aut],
Pavlo Mozharovskyi [aut]
Maintainer: Oleg Badunenko <oleg.badunenko@port.ac.uk>
Diff between npsf versions 0.3.0 dated 2018-01-16 and 0.3.1 dated 2018-01-17
ChangeLog | 2 +- DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/nllpk/simplexMethod.cpp | 16 +++++++++------- 4 files changed, 17 insertions(+), 15 deletions(-)
Title: Semi-Confirmatory Structural Equation Modeling via Penalized
Likelihood
Description: Fits semi-confirmatory structural equation modeling (SEM) via penalized likelihood (PL) with lasso or minimax concave penalty (MCP).
Author: Po-Hsien Huang [cre, aut],
Wen-Hsin Hu [aut]
Maintainer: Po-Hsien Huang <psyphh@gmail.com>
Diff between lslx versions 0.6.0 dated 2017-11-03 and 0.6.1 dated 2018-01-17
lslx-0.6.0/lslx/README.md |only lslx-0.6.1/lslx/DESCRIPTION | 17 lslx-0.6.1/lslx/MD5 | 83 - lslx-0.6.1/lslx/R/RcppExports.R | 4 lslx-0.6.1/lslx/R/lslx-extract-method.R | 162 ++- lslx-0.6.1/lslx/R/lslx-fit-method.R | 118 +- lslx-0.6.1/lslx/R/lslx-get-method.R | 3 lslx-0.6.1/lslx/R/lslx-initialize-method.R | 1 lslx-0.6.1/lslx/R/lslx-plot-method.R | 58 - lslx-0.6.1/lslx/R/lslx-set-block-method.R |only lslx-0.6.1/lslx/R/lslx-set-coefficient-method.R | 29 lslx-0.6.1/lslx/R/lslx-set-directed-method.R | 74 - lslx-0.6.1/lslx/R/lslx-set-heterogeneity-method.R | 115 +- lslx-0.6.1/lslx/R/lslx-set-undirected-method.R | 83 + lslx-0.6.1/lslx/R/lslx-summarize-method.R | 619 +++++++------ lslx-0.6.1/lslx/R/lslx-test-method.R | 7 lslx-0.6.1/lslx/R/lslx.R | 480 +++++----- lslx-0.6.1/lslx/R/lslxData.R | 16 lslx-0.6.1/lslx/R/lslxFitting.R | 24 lslx-0.6.1/lslx/R/lslxModel.R | 29 lslx-0.6.1/lslx/build/vignette.rds |binary lslx-0.6.1/lslx/inst/doc/factor-analysis.R | 2 lslx-0.6.1/lslx/inst/doc/factor-analysis.Rmd | 6 lslx-0.6.1/lslx/inst/doc/factor-analysis.html | 158 +-- lslx-0.6.1/lslx/inst/doc/missing-data-analysis.R | 2 lslx-0.6.1/lslx/inst/doc/missing-data-analysis.Rmd | 4 lslx-0.6.1/lslx/inst/doc/missing-data-analysis.html | 180 +-- lslx-0.6.1/lslx/inst/doc/multi-group-analysis.R | 2 lslx-0.6.1/lslx/inst/doc/multi-group-analysis.Rmd | 6 lslx-0.6.1/lslx/inst/doc/multi-group-analysis.html | 216 ++-- lslx-0.6.1/lslx/inst/doc/regression-analysis.Rmd | 2 lslx-0.6.1/lslx/inst/doc/regression-analysis.html | 130 +- lslx-0.6.1/lslx/inst/doc/structural-equation-modeling.R | 2 lslx-0.6.1/lslx/inst/doc/structural-equation-modeling.Rmd | 6 lslx-0.6.1/lslx/inst/doc/structural-equation-modeling.html | 232 ++-- lslx-0.6.1/lslx/man/lslx.Rd | 51 - lslx-0.6.1/lslx/src/RcppExports.cpp | 16 lslx-0.6.1/lslx/src/lslxOptimizer.cpp | 481 +--------- lslx-0.6.1/lslx/src/utilities.cpp |only lslx-0.6.1/lslx/vignettes/factor-analysis.Rmd | 6 lslx-0.6.1/lslx/vignettes/missing-data-analysis.Rmd | 4 lslx-0.6.1/lslx/vignettes/multi-group-analysis.Rmd | 6 lslx-0.6.1/lslx/vignettes/regression-analysis.Rmd | 2 lslx-0.6.1/lslx/vignettes/structural-equation-modeling.Rmd | 6 44 files changed, 1689 insertions(+), 1753 deletions(-)
Title: Efficient Designs for Discrete Choice Experiments
Description: Generates efficient designs for discrete choice experiments based on the multinomial logit model, and individually adapted designs for the mixed multinomial logit model. The generated designs can be presented on screen and choice data can be gathered using a shiny application. Crabbe M, Akinc D and Vandebroek M (2014) <doi:10.1016/j.trb.2013.11.008>.
Author: Frits Traets [aut, cre]
Maintainer: Frits Traets <frits.traets@kuleuven.be>
Diff between idefix versions 0.2.2 dated 2017-12-15 and 0.2.4 dated 2018-01-17
DESCRIPTION | 6 - MD5 | 34 +++--- NAMESPACE | 2 R/data.R | 17 +++ R/efficiency_algorithms.R | 24 ++-- R/efficiency_criterions.R | 2 R/generation.R | 12 +- R/importance_sampling.R | 18 +-- R/shiny_support.R | 222 +++++++++++++++++++++++--------------------- build/partial.rdb |binary data/aggregate_design.RData |only man/Charbin.Rd | 2 man/Decode.Rd | 2 man/ImpsampMNL.Rd | 14 +- man/Modfed.Rd | 6 - man/SeqDB.Rd | 10 - man/SeqKL.Rd | 10 - man/SurveyApp.Rd | 52 +++++----- man/aggregate_design.Rd |only 19 files changed, 236 insertions(+), 197 deletions(-)
Title: Time Series Regression Models with Distributed Lag Models
Description: Provides time series regression models with one predictor using finite distributed lag models, polynomial (Almon) distributed lag models, geometric distributed lag models with Koyck transformation, and autoregressive distributed lag models. It also consists of functions for computation of h-step ahead forecasts from these models. See Baltagi (2011) <doi:10.1007/978-3-642-20059-5> for more information.
Author: Haydar Demirhan
Maintainer: Haydar Demirhan <haydar.demirhan@rmit.edu.au>
Diff between dLagM versions 1.0.0 dated 2017-12-20 and 1.0.2 dated 2018-01-17
DESCRIPTION | 12 ++++----- MD5 | 52 +++++++++++++++++++++--------------------- NAMESPACE | 3 ++ R/MASE.default.R | 20 +++++++--------- R/ardlDlm.main.R | 12 ++++++++- R/ardlDlmForecast.default.R | 6 ++-- R/ardlDlmForecast.main.R | 12 +++++---- R/dlm.default.R | 2 - R/dlm.main.R | 6 +++- R/dlmForecast.default.R | 9 +++---- R/dlmForecast.main.R | 22 +++++++++-------- R/finiteDLMauto.R | 2 - R/finiteDLMauto.default.R | 30 +++++++++++++++++------- R/finiteDLMauto.main.R | 53 +++++++++++++++++++++++-------------------- R/koyckDlm.main.R | 6 ++-- R/koyckDlmForecast.default.R | 11 ++++---- R/koyckDlmForecast.main.R | 7 ++++- R/poly.dlm.tests.R | 3 ++ R/polyDlm.main.R | 2 - R/polyDlmForecast.default.R | 6 ++-- R/polyDlmForecast.main.R | 7 ++++- R/sortScore.default.R | 2 - R/sortScore.main.R | 1 man/ardlDlm.Rd | 12 ++++----- man/dLagM-package.Rd | 4 +-- man/finiteDLMauto.Rd | 37 +++++++++++++++++++++--------- man/polyDlm.Rd | 2 - 27 files changed, 202 insertions(+), 139 deletions(-)
Title: Bayesian Analysis of Contingency Tables
Description: Bayesian analysis of complete and incomplete contingency tables.
Author: Antony M. Overstall
Maintainer: Antony M. Overstall <A.M.Overstall@soton.ac.uk>
Diff between conting versions 1.6 dated 2016-08-11 and 1.6.1 dated 2018-01-17
DESCRIPTION | 10 MD5 | 165 ++++++------ R/RJ_update.R | 140 +++++----- R/RJ_update_swap.R | 216 +++++++-------- R/accept_rate.R | 22 - R/add_term.R | 92 +++--- R/bayespval.R | 108 +++---- R/bcct.R | 194 +++++++------- R/bcct.fit.R | 192 +++++++------- R/bcctsubset.R | 256 +++++++++--------- R/bcctsubset.fit.R | 246 +++++++++--------- R/bcctsubsetu.R | 198 +++++++------- R/bcctu.R | 152 +++++------ R/beta_mode.R | 164 ++++++------ R/bict.R | 252 +++++++++--------- R/bict.fit.R | 244 ++++++++--------- R/bictu.R | 180 ++++++------- R/conting-internal.R |only R/drop_term.R | 62 ++-- R/find_cens.R | 58 ++-- R/formula2index.R | 18 - R/index2formula.R | 34 +- R/index2model.R | 6 R/inter_probs.R | 82 +++--- R/inter_stats.R | 100 +++---- R/iwls_mh.R | 64 ++-- R/mod_probs.R | 108 +++---- R/model2index.R | 12 R/plot.pval.R | 20 - R/plot.totpop.R | 10 R/print.acceptrate.R | 10 R/print.bcct.R | 52 +-- R/print.bict.R | 60 ++-- R/print.interprob.R | 18 - R/print.interstat.R | 28 +- R/print.modprobs.R | 14 - R/print.pval.R | 28 +- R/print.sbcct.R | 20 - R/print.sbict.R | 24 - R/print.submod.R | 76 ++--- R/print.totpop.R | 14 - R/prop_mod.R | 84 +++--- R/sub_model.R | 232 ++++++++--------- R/summary.bcct.R | 64 ++-- R/summary.bict.R | 66 ++-- R/total_pop.R | 80 ++--- data/AOH.rda |binary data/ScotPWID.rda |binary data/heart.rda |binary data/spina.rda |binary man/AOH.Rd | 100 +++---- man/RJ_update.Rd | 286 ++++++++++---------- man/ScotPWID.Rd | 146 +++++----- man/accept_rate.Rd | 114 ++++---- man/add_term.Rd | 236 ++++++++--------- man/bayespval.Rd | 216 +++++++-------- man/bcct.Rd | 554 ++++++++++++++++++++-------------------- man/bcct.fit.Rd | 344 ++++++++++++------------- man/beta_mode.Rd | 212 +++++++-------- man/bict.Rd | 654 ++++++++++++++++++++++++------------------------ man/bict.fit.Rd | 372 +++++++++++++-------------- man/conting-package.Rd | 280 ++++++++++---------- man/find_cens.Rd | 172 ++++++------ man/formula2index.Rd | 168 ++++++------ man/heart.Rd | 122 ++++---- man/index2model.Rd | 160 +++++------ man/inter_probs.Rd | 186 ++++++------- man/inter_stats.Rd | 202 +++++++------- man/iwls_mh.Rd | 158 +++++------ man/mod_probs.Rd | 194 +++++++------- man/plot.pval.Rd | 66 ++-- man/plot.totpop.Rd | 70 ++--- man/print.acceptrate.Rd | 82 +++--- man/print.bcct.Rd | 92 +++--- man/print.interprob.Rd | 76 ++--- man/print.interstat.Rd | 74 ++--- man/print.modprobs.Rd | 74 ++--- man/print.pval.Rd | 80 ++--- man/print.submod.Rd | 84 +++--- man/print.totpop.Rd | 74 ++--- man/spina.Rd | 108 +++---- man/sub_model.Rd | 312 +++++++++++----------- man/summary.bcct.Rd | 342 ++++++++++++------------- man/total_pop.Rd | 178 ++++++------- 84 files changed, 5432 insertions(+), 5431 deletions(-)
Title: Automatic Marking of R Assignments
Description: Automatic marking of R assignments for students and teachers based
on 'testthat' test suites.
Author: Mans Magnusson, Oscar Pettersson
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between markmyassignment versions 0.6.1 dated 2016-08-15 and 0.8.1 dated 2018-01-17
markmyassignment-0.6.1/markmyassignment/R/assertion_funcions.R |only markmyassignment-0.6.1/markmyassignment/man/assert_function_arguments_in_API.Rd |only markmyassignment-0.6.1/markmyassignment/man/assignment_yml_ok.Rd |only markmyassignment-0.6.1/markmyassignment/man/cached_tasks.Rd |only markmyassignment-0.6.1/markmyassignment/man/check_assignment_file.Rd |only markmyassignment-0.6.1/markmyassignment/man/check_existance_tasks.Rd |only markmyassignment-0.6.1/markmyassignment/man/get_mark_my_reporter.Rd |only markmyassignment-0.6.1/markmyassignment/man/get_tests.Rd |only markmyassignment-0.8.1/markmyassignment/DESCRIPTION | 18 markmyassignment-0.8.1/markmyassignment/MD5 | 135 +- markmyassignment-0.8.1/markmyassignment/NAMESPACE | 6 markmyassignment-0.8.1/markmyassignment/R/expectations.R | 243 ++-- markmyassignment-0.8.1/markmyassignment/R/github.R |only markmyassignment-0.8.1/markmyassignment/R/mark_my_assignment.R | 304 ++--- markmyassignment-0.8.1/markmyassignment/R/mark_my_dir.R |only markmyassignment-0.8.1/markmyassignment/R/mark_my_file.R | 35 markmyassignment-0.8.1/markmyassignment/R/markmyassignment.R | 2 markmyassignment-0.8.1/markmyassignment/R/set_assignment.R | 530 ++++++++-- markmyassignment-0.8.1/markmyassignment/build/vignette.rds |binary markmyassignment-0.8.1/markmyassignment/inst/doc/markmyassignment-teacher.R |only markmyassignment-0.8.1/markmyassignment/inst/doc/markmyassignment-teacher.Rmd |only markmyassignment-0.8.1/markmyassignment/inst/doc/markmyassignment-teacher.html |only markmyassignment-0.8.1/markmyassignment/inst/doc/markmyassignment.R | 14 markmyassignment-0.8.1/markmyassignment/inst/doc/markmyassignment.Rmd | 61 - markmyassignment-0.8.1/markmyassignment/inst/doc/markmyassignment.html | 413 ++++--- markmyassignment-0.8.1/markmyassignment/inst/extdata/assignment_template.yml |only markmyassignment-0.8.1/markmyassignment/inst/extdata/example_assignment01.yml | 5 markmyassignment-0.8.1/markmyassignment/inst/extdata/example_assignment02.yml | 1 markmyassignment-0.8.1/markmyassignment/inst/extdata/example_assignment03.yml | 2 markmyassignment-0.8.1/markmyassignment/inst/extdata/example_assignment04.yml | 4 markmyassignment-0.8.1/markmyassignment/inst/extdata/example_assignment06.yml | 2 markmyassignment-0.8.1/markmyassignment/inst/extdata/example_assignment07_pkgs.yml | 1 markmyassignment-0.8.1/markmyassignment/inst/extdata/example_assignment08_bad_pkgs.yml | 3 markmyassignment-0.8.1/markmyassignment/inst/extdata/example_assignment09.yml |only markmyassignment-0.8.1/markmyassignment/inst/extdata/example_assignment09a.yml |only markmyassignment-0.8.1/markmyassignment/inst/extdata/example_assignment09b.yml |only markmyassignment-0.8.1/markmyassignment/inst/extdata/example_dir/example_not_parsable.R |only markmyassignment-0.8.1/markmyassignment/inst/extdata/example_lab_file_circular.R | 20 markmyassignment-0.8.1/markmyassignment/inst/extdata/example_lab_file_errors.R |only markmyassignment-0.8.1/markmyassignment/inst/extdata/example_mandatory.R | 2 markmyassignment-0.8.1/markmyassignment/inst/extdata/example_run_after.R |only markmyassignment-0.8.1/markmyassignment/inst/extdata/example_run_before1.R |only markmyassignment-0.8.1/markmyassignment/inst/extdata/example_run_before2.R |only markmyassignment-0.8.1/markmyassignment/inst/extdata/example_task2_a.R | 2 markmyassignment-0.8.1/markmyassignment/inst/extdata/example_task2_b.R | 2 markmyassignment-0.8.1/markmyassignment/man/assert_assignment_config.Rd |only markmyassignment-0.8.1/markmyassignment/man/assignment_config.Rd |only markmyassignment-0.8.1/markmyassignment/man/assignment_paths_and_files.Rd |only markmyassignment-0.8.1/markmyassignment/man/check_installed_packages.Rd | 5 markmyassignment-0.8.1/markmyassignment/man/cheer.Rd | 1 markmyassignment-0.8.1/markmyassignment/man/construct_assignment_description.Rd |only markmyassignment-0.8.1/markmyassignment/man/create_github_download_url.Rd |only markmyassignment-0.8.1/markmyassignment/man/delete_circular_calls.Rd | 1 markmyassignment-0.8.1/markmyassignment/man/directories.Rd | 14 markmyassignment-0.8.1/markmyassignment/man/download_assignment.Rd |only markmyassignment-0.8.1/markmyassignment/man/expect_attached_package.Rd | 7 markmyassignment-0.8.1/markmyassignment/man/expect_function_arguments.Rd | 10 markmyassignment-0.8.1/markmyassignment/man/expect_function_code.Rd | 12 markmyassignment-0.8.1/markmyassignment/man/expect_function_self_contained.Rd | 8 markmyassignment-0.8.1/markmyassignment/man/expect_no_attached_forbidden_package.Rd |only markmyassignment-0.8.1/markmyassignment/man/expect_no_forbidden_function_code.Rd |only markmyassignment-0.8.1/markmyassignment/man/expect_package.Rd | 1 markmyassignment-0.8.1/markmyassignment/man/expect_self_contained.Rd | 1 markmyassignment-0.8.1/markmyassignment/man/forbidden_functions.Rd |only markmyassignment-0.8.1/markmyassignment/man/get_assignment_full_subpath.Rd |only markmyassignment-0.8.1/markmyassignment/man/get_file.Rd | 10 markmyassignment-0.8.1/markmyassignment/man/get_github_path_info.Rd |only markmyassignment-0.8.1/markmyassignment/man/is_github_path.Rd |only markmyassignment-0.8.1/markmyassignment/man/mark_my_assignment.Rd | 11 markmyassignment-0.8.1/markmyassignment/man/mark_my_dir.Rd | 20 markmyassignment-0.8.1/markmyassignment/man/mark_my_file.Rd | 9 markmyassignment-0.8.1/markmyassignment/man/markmyassignment.Rd | 1 markmyassignment-0.8.1/markmyassignment/man/path_type.Rd | 7 markmyassignment-0.8.1/markmyassignment/man/read_assignment_yml.Rd | 5 markmyassignment-0.8.1/markmyassignment/man/run_test_suite.Rd | 6 markmyassignment-0.8.1/markmyassignment/man/set_assignment.Rd | 23 markmyassignment-0.8.1/markmyassignment/man/show_tasks.Rd | 3 markmyassignment-0.8.1/markmyassignment/man/temp_folder_check_create.Rd | 1 markmyassignment-0.8.1/markmyassignment/man/translate_tasks_name_to_task_files.Rd |only markmyassignment-0.8.1/markmyassignment/man/write_assignment_yml.Rd |only markmyassignment-0.8.1/markmyassignment/tests/testthat/test-expectation.R | 27 markmyassignment-0.8.1/markmyassignment/tests/testthat/test-github.R |only markmyassignment-0.8.1/markmyassignment/tests/testthat/test-mark_my_assignment.R | 85 + markmyassignment-0.8.1/markmyassignment/tests/testthat/test-mark_my_dir.R |only markmyassignment-0.8.1/markmyassignment/tests/testthat/test-mark_my_file.R | 78 + markmyassignment-0.8.1/markmyassignment/tests/testthat/test-set_assignment.R | 139 ++ markmyassignment-0.8.1/markmyassignment/vignettes/markmyassignment-teacher.Rmd |only markmyassignment-0.8.1/markmyassignment/vignettes/markmyassignment.Rmd | 61 - 88 files changed, 1493 insertions(+), 858 deletions(-)
More information about markmyassignment at CRAN
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Title: Utility Functions to Execute Standard Extract/Transform/Load
Operations (using Package 'ff') on Large Data
Description: Provides functions to facilitate the use of the 'ff' package
in interaction with big data in 'SQL' databases (e.g. in 'Oracle', 'MySQL',
'PostgreSQL', 'Hive') by allowing easy importing directly into 'ffdf' objects
using 'DBI', 'RODBC' and 'RJDBC'. Also contains some basic utility functions to
do fast left outer join merging based on 'match', factorisation of data and a
basic function for re-coding vectors.
Author: Jan Wijffels
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between ETLUtils versions 1.3 dated 2015-05-18 and 1.4 dated 2018-01-17
DESCRIPTION | 23 ++++++++------- MD5 | 34 +++++++++++------------ NAMESPACE | 2 - NEWS | 8 +++++ R/ffsql.R | 70 ++++++++++++++++++++++++++++-------------------- README.md | 13 ++------ man/ETLUtils-package.Rd | 5 +-- man/factorise.Rd | 7 ++-- man/matchmerge.Rd | 39 +++++++++++++------------- man/naLOCFPlusone.Rd | 3 -- man/read.dbi.ffdf.Rd | 37 ++++++++++++------------- man/read.jdbc.ffdf.Rd | 23 +++++++-------- man/read.odbc.ffdf.Rd | 32 ++++++++++++--------- man/recoder.Rd | 5 +-- man/renameColumns.Rd | 5 +-- man/write.dbi.ffdf.Rd | 19 +++++++------ man/write.jdbc.ffdf.Rd | 15 ++++------ man/write.odbc.ffdf.Rd | 21 ++++++-------- 18 files changed, 186 insertions(+), 175 deletions(-)
Title: Decision Models with Multi Attribute Utility Theory
Description: Provides functions for the creation, evaluation and test of decision models based in
Multi Attribute Utility Theory (MAUT). Can process and evaluate local risk aversion utilities
for a set of indexes, compute utilities and weights for the whole decision tree defining the
decision model and simulate weights employing Dirichlet distributions under addition constraints
in weights.
Author: Felipe Aguirre [ctb],
Julio Andrade [ctb],
Pedro Guarderas [aut, cre],
Daniel Lagos [ctb],
Andrés Lopez [ctb],
Nelson Recalde [ctb],
Edison Salazar [ctb]
Maintainer: Pedro Guarderas <pedro.felipe.guarderas@gmail.com>
Diff between mau versions 0.1.0 dated 2017-07-18 and 0.1.2 dated 2018-01-17
DESCRIPTION | 42 ++++++++++++---- MD5 | 65 +++++++++++++++----------- NAMESPACE | 3 + NEWS.md |only R/Bar.Plot.R |only R/Compute.Model.R | 104 ++++++++++-------------------------------- R/Eval.Utilities.R | 71 +++++++++++++--------------- R/Make.Tree.R | 10 ++-- R/Plot.Simulation.Weight.R | 29 ++++++----- R/Read.Tree.R | 10 ++-- R/Read.Utilities.R | 20 ++++---- R/Simulate.Weights.R | 14 +++-- R/Spider.Plot.R | 1 R/Stand.String.R | 9 ++- R/mau.R |only README.md | 10 +--- build |only inst/REFERENCES.bib |only inst/doc |only inst/extdata/tree.xls |only man/Bar.Plot.Rd |only man/Compute.Model.Rd | 74 ++++------------------------- man/Deep.Compute.Rd | 9 +-- man/Divide.Weights.Rd | 7 +- man/Eval.Utilities.Rd | 77 ++++++++++++++----------------- man/Index.Weights.Rd | 7 +- man/Make.Decision.Tree.Rd | 16 ++---- man/Plot.Simulation.Weight.Rd | 33 ++++++------- man/Read.Tree.Rd | 17 +++--- man/Read.Utilities.Rd | 27 +++++----- man/Sim.Const.Weights.Rd | 12 ++-- man/Sim.Weights.Rd | 16 +++--- man/Spider.Plot.Rd | 2 man/Stand.String.Rd | 8 +-- man/Sum.Weights.Rd | 7 +- man/mau-package.Rd |only vignettes |only 37 files changed, 310 insertions(+), 390 deletions(-)
Title: Full Text of 'Scholarly' Articles Across Many Data Sources
Description: Provides a single interface to many sources of full text
'scholarly' data, including 'Biomed Central', Public Library of
Science, 'Pubmed Central', 'eLife', 'F1000Research', 'PeerJ',
'Pensoft', 'Hindawi', 'arXiv' 'preprints', and more. Functionality
included for searching for articles, downloading full or partial
text, downloading supplementary materials, converting to various
data formats.
Author: Scott Chamberlain [aut, cre] (0000-0003-1444-9135),
Will Pearse [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between fulltext versions 0.1.8 dated 2016-07-23 and 1.0.0 dated 2018-01-17
fulltext-0.1.8/fulltext/R/extract_tools.R |only fulltext-0.1.8/fulltext/R/ft_extract_corpus.R |only fulltext-0.1.8/fulltext/R/ft_extract_utils.R |only fulltext-0.1.8/fulltext/R/pdfx.R |only fulltext-0.1.8/fulltext/R/plugins_get_old.R |only fulltext-0.1.8/fulltext/R/tm_helpers.R |only fulltext-0.1.8/fulltext/inst/vign/formats.Rmd |only fulltext-0.1.8/fulltext/inst/vign/formats.md |only fulltext-0.1.8/fulltext/man/chunks.Rd |only fulltext-0.1.8/fulltext/man/collect.Rd |only fulltext-0.1.8/fulltext/man/extract_tools.Rd |only fulltext-0.1.8/fulltext/man/ft_extract_corpus.Rd |only fulltext-0.1.8/fulltext/man/pdfx.Rd |only fulltext-0.1.8/fulltext/tests/testthat/test-ft_extract_corpus.R |only fulltext-1.0.0/fulltext/DESCRIPTION | 37 fulltext-1.0.0/fulltext/LICENSE | 2 fulltext-1.0.0/fulltext/MD5 | 173 +- fulltext-1.0.0/fulltext/NAMESPACE | 60 fulltext-1.0.0/fulltext/NEWS.md | 77 + fulltext-1.0.0/fulltext/R/bio_utils.R | 78 - fulltext-1.0.0/fulltext/R/bmc_utils.R | 15 fulltext-1.0.0/fulltext/R/cache.R | 172 -- fulltext-1.0.0/fulltext/R/chunks.R | 321 +++-- fulltext-1.0.0/fulltext/R/collect.R | 65 - fulltext-1.0.0/fulltext/R/defunct.R |only fulltext-1.0.0/fulltext/R/europe_pmc_utils.R | 58 fulltext-1.0.0/fulltext/R/ft_abstract.R |only fulltext-1.0.0/fulltext/R/ft_browse.R | 29 fulltext-1.0.0/fulltext/R/ft_extract.R | 154 -- fulltext-1.0.0/fulltext/R/ft_get.R | 612 +++++++--- fulltext-1.0.0/fulltext/R/ft_get_si.R | 20 fulltext-1.0.0/fulltext/R/ft_get_si_plugins.R | 2 fulltext-1.0.0/fulltext/R/ft_get_si_utils.R | 7 fulltext-1.0.0/fulltext/R/ft_links.R | 59 fulltext-1.0.0/fulltext/R/ft_providers.R | 2 fulltext-1.0.0/fulltext/R/ft_search.R | 161 +- fulltext-1.0.0/fulltext/R/ft_serialize.R | 157 -- fulltext-1.0.0/fulltext/R/ft_table.R |only fulltext-1.0.0/fulltext/R/ftxt_cache.R |only fulltext-1.0.0/fulltext/R/fulltext-package.R | 145 +- fulltext-1.0.0/fulltext/R/fulltext-warnings.R |only fulltext-1.0.0/fulltext/R/ma_utils.R |only fulltext-1.0.0/fulltext/R/normalize_doi.R |only fulltext-1.0.0/fulltext/R/on_load.R |only fulltext-1.0.0/fulltext/R/plos_code.R |only fulltext-1.0.0/fulltext/R/plugins_abstract.R |only fulltext-1.0.0/fulltext/R/plugins_get.R | 594 ++++++++- fulltext-1.0.0/fulltext/R/plugins_get_links.R |only fulltext-1.0.0/fulltext/R/plugins_links.R | 32 fulltext-1.0.0/fulltext/R/plugins_search.R | 63 - fulltext-1.0.0/fulltext/R/scopus_utils.R |only fulltext-1.0.0/fulltext/R/zzz.R | 21 fulltext-1.0.0/fulltext/README.md | 236 +-- fulltext-1.0.0/fulltext/build/vignette.rds |binary fulltext-1.0.0/fulltext/inst/doc/formats.Rmd | 15 fulltext-1.0.0/fulltext/inst/doc/formats.html | 14 fulltext-1.0.0/fulltext/inst/doc/fulltext_vignette.Rmd | 425 ++---- fulltext-1.0.0/fulltext/inst/doc/fulltext_vignette.html | 421 ++---- fulltext-1.0.0/fulltext/inst/doc/getting_fulltext.Rmd | 152 +- fulltext-1.0.0/fulltext/inst/doc/getting_fulltext.html | 153 +- fulltext-1.0.0/fulltext/inst/examples/example1.txt |only fulltext-1.0.0/fulltext/inst/ignore/cache_extra_code.R |only fulltext-1.0.0/fulltext/inst/ignore/ft_extract_corpus.R |only fulltext-1.0.0/fulltext/inst/ignore/pdfx.R |only fulltext-1.0.0/fulltext/inst/ignore/plugins_get_old.R |only fulltext-1.0.0/fulltext/inst/ignore/test-dois.R |only fulltext-1.0.0/fulltext/inst/vign/fulltext_vignette.Rmd | 50 fulltext-1.0.0/fulltext/inst/vign/fulltext_vignette.md | 425 ++---- fulltext-1.0.0/fulltext/inst/vign/getting_fulltext.Rmd | 34 fulltext-1.0.0/fulltext/inst/vign/getting_fulltext.md | 152 +- fulltext-1.0.0/fulltext/man/biorxiv_search.Rd |only fulltext-1.0.0/fulltext/man/bmc_search.Rd | 6 fulltext-1.0.0/fulltext/man/cache.Rd | 53 fulltext-1.0.0/fulltext/man/chunks-defunct.Rd |only fulltext-1.0.0/fulltext/man/collect-defunct.Rd |only fulltext-1.0.0/fulltext/man/eupmc.Rd | 31 fulltext-1.0.0/fulltext/man/ft_abstract.Rd |only fulltext-1.0.0/fulltext/man/ft_browse.Rd | 16 fulltext-1.0.0/fulltext/man/ft_chunks.Rd |only fulltext-1.0.0/fulltext/man/ft_collect.Rd |only fulltext-1.0.0/fulltext/man/ft_extract.Rd | 54 fulltext-1.0.0/fulltext/man/ft_extract_corpus-defunct.Rd |only fulltext-1.0.0/fulltext/man/ft_get-warnings.Rd |only fulltext-1.0.0/fulltext/man/ft_get.Rd | 326 ++++- fulltext-1.0.0/fulltext/man/ft_get_si.Rd | 25 fulltext-1.0.0/fulltext/man/ft_links.Rd | 51 fulltext-1.0.0/fulltext/man/ft_providers.Rd | 3 fulltext-1.0.0/fulltext/man/ft_search.Rd | 117 + fulltext-1.0.0/fulltext/man/ft_serialize.Rd | 64 - fulltext-1.0.0/fulltext/man/ft_table.Rd |only fulltext-1.0.0/fulltext/man/ft_type_sum.Rd | 9 fulltext-1.0.0/fulltext/man/ftxt_cache.Rd |only fulltext-1.0.0/fulltext/man/fulltext-defunct.Rd |only fulltext-1.0.0/fulltext/man/fulltext-package.Rd | 128 +- fulltext-1.0.0/fulltext/man/get_text-defunct.Rd |only fulltext-1.0.0/fulltext/man/microsoft-internals.Rd |only fulltext-1.0.0/fulltext/man/pdfx-defunct.Rd |only fulltext-1.0.0/fulltext/man/pipe.Rd | 1 fulltext-1.0.0/fulltext/man/scopus_search.Rd |only fulltext-1.0.0/fulltext/man/tabularize-defunct.Rd |only fulltext-1.0.0/fulltext/tests/test-all.R |only fulltext-1.0.0/fulltext/tests/testthat/helper-fulltext.R |only fulltext-1.0.0/fulltext/tests/testthat/test-chunks.R | 80 - fulltext-1.0.0/fulltext/tests/testthat/test-ft_abstract.R |only fulltext-1.0.0/fulltext/tests/testthat/test-ft_browse.R | 27 fulltext-1.0.0/fulltext/tests/testthat/test-ft_extract.R | 18 fulltext-1.0.0/fulltext/tests/testthat/test-ft_get.r | 55 fulltext-1.0.0/fulltext/tests/testthat/test-ft_get_si.r | 10 fulltext-1.0.0/fulltext/tests/testthat/test-ft_search.R | 26 fulltext-1.0.0/fulltext/tests/testthat/test-ft_serialize.R | 89 - fulltext-1.0.0/fulltext/vignettes/formats.Rmd | 15 fulltext-1.0.0/fulltext/vignettes/fulltext_vignette.Rmd | 425 ++---- fulltext-1.0.0/fulltext/vignettes/getting_fulltext.Rmd | 152 +- 113 files changed, 3797 insertions(+), 3177 deletions(-)