Title: Fast Generators and Iterators for Permutations, Combinations and
Partitions
Description: Fast generators and iterators for permutations, combinations
and partitions. The iterators allow users to generate arrangements in
a memory efficient manner and the generated arrangements are in
lexicographical (dictionary) order. Permutations and combinations can
be drawn with/without replacement and support multisets. It has been
demonstrated that 'arrangements' outperforms most of the existing
packages of similar kind. Some benchmarks could be found at
<https://randy3k.github.io/arrangements/articles/benchmark.html>.
Author: Randy Lai [aut, cre]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between arrangements versions 1.0.1 dated 2018-01-11 and 1.0.2 dated 2018-01-18
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- src/combinations.c | 2 +- src/k_partitions.c | 4 ++-- src/k_permutations.c | 2 +- src/multiset_combinations.c | 7 ++++--- src/partitions.c | 28 ++++++++++++++++++---------- src/permutations.c | 2 +- src/replace_combinations.c | 2 +- src/replace_permutations.c | 2 +- 10 files changed, 42 insertions(+), 33 deletions(-)
Title: Decision Trees
Description: Combines various decision tree algorithms, plus both
linear regression and ensemble methods into one package.
Allows for the use of both continuous and categorical outcomes.
An optional feature is to quantify the (in)stability to the
decision tree methods, indicating when results can be trusted
and when ensemble methods may be preferential.
Author: Ross Jacobucci
Maintainer: Ross Jacobucci <rcjacobuc@gmail.com>
Diff between dtree versions 0.2.3 dated 2017-04-20 and 0.4.2 dated 2018-01-18
DESCRIPTION | 6 +- MD5 | 20 ++++----- R/bump_ret.R | 50 ++++++++++++++++-------- R/ctreePrune_ret.R | 109 +++++++++++++++++++++++++++++++++++------------------ R/ctree_ret.R | 63 ++++++++++++++++++++---------- R/dtree.R | 31 +++++++++++---- R/evtree_ret.R | 108 +++++++++++++++++++++++++++++++++++++--------------- R/lm_ret.R | 59 +++++++++++++++++----------- R/rf_ret.R | 59 +++++++++++++++++----------- R/rpart_ret.R | 22 ++++++++-- R/stable.R | 2 11 files changed, 355 insertions(+), 174 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <http://canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut, cre],
Connie Brett [ctb]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 1.18.1 dated 2017-12-21 and 1.18.2 dated 2018-01-18
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 3 +++ R/canvasXpress.R | 8 ++++---- README.md | 2 ++ inst/doc/additional_examples.html | 4 ++-- inst/doc/getting_started.html | 4 ++-- inst/htmlwidgets/canvasXpress.js | 7 +++---- 8 files changed, 27 insertions(+), 23 deletions(-)
Title: CRAN Task Views
Description: Infrastructure for task views to CRAN-style repositories: Querying task views and installing the associated
packages (client-side tools), generating HTML pages and storing task view information in the repository
(server-side tools).
Author: Achim Zeileis [aut, cre] (0000-0003-0918-3766),
Kurt Hornik [aut] (0000-0003-4198-9911)
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between ctv versions 0.8-3 dated 2017-10-07 and 0.8-4 dated 2018-01-18
ctv-0.8-3/ctv/inst/ctv/ctv_npkg.R |only ctv-0.8-3/ctv/inst/ctv/psycho-npkg.pdf |only ctv-0.8-4/ctv/DESCRIPTION | 14 ctv-0.8-4/ctv/MD5 | 72 ++-- ctv-0.8-4/ctv/NEWS | 9 ctv-0.8-4/ctv/R/ctv-server.R | 14 ctv-0.8-4/ctv/build/vignette.rds |binary ctv-0.8-4/ctv/inst/ctv/ChemPhys.ctv | 30 + ctv-0.8-4/ctv/inst/ctv/ClinicalTrials.ctv | 26 + ctv-0.8-4/ctv/inst/ctv/Cluster.ctv | 5 ctv-0.8-4/ctv/inst/ctv/DifferentialEquations.ctv | 50 ++- ctv-0.8-4/ctv/inst/ctv/Distributions.ctv | 300 +++++++++++++++---- ctv-0.8-4/ctv/inst/ctv/Econometrics.ctv | 5 ctv-0.8-4/ctv/inst/ctv/ExperimentalDesign.ctv | 193 ++++++++---- ctv-0.8-4/ctv/inst/ctv/ExtremeValue.ctv | 9 ctv-0.8-4/ctv/inst/ctv/Finance.ctv | 11 ctv-0.8-4/ctv/inst/ctv/FunctionalData.ctv | 8 ctv-0.8-4/ctv/inst/ctv/HighPerformanceComputing.ctv | 80 +++-- ctv-0.8-4/ctv/inst/ctv/MachineLearning.ctv | 35 +- ctv-0.8-4/ctv/inst/ctv/MetaAnalysis.ctv | 119 +++++-- ctv-0.8-4/ctv/inst/ctv/Multivariate.ctv | 4 ctv-0.8-4/ctv/inst/ctv/NaturalLanguageProcessing.ctv | 24 + ctv-0.8-4/ctv/inst/ctv/NumericalMathematics.ctv | 7 ctv-0.8-4/ctv/inst/ctv/OfficialStatistics.ctv | 153 ++++++--- ctv-0.8-4/ctv/inst/ctv/Optimization.ctv | 270 ++++++++++------- ctv-0.8-4/ctv/inst/ctv/Pharmacokinetics.ctv | 6 ctv-0.8-4/ctv/inst/ctv/Phylogenetics.ctv | 11 ctv-0.8-4/ctv/inst/ctv/Psychometrics.ctv | 24 - ctv-0.8-4/ctv/inst/ctv/ReproducibleResearch.ctv | 7 ctv-0.8-4/ctv/inst/ctv/Spatial.ctv | 12 ctv-0.8-4/ctv/inst/ctv/SpatioTemporal.ctv | 14 ctv-0.8-4/ctv/inst/ctv/Survival.ctv | 22 - ctv-0.8-4/ctv/inst/ctv/TimeSeries.ctv | 25 + ctv-0.8-4/ctv/inst/ctv/WebTechnologies.ctv | 3 ctv-0.8-4/ctv/inst/ctv/gR.ctv | 106 ++++-- ctv-0.8-4/ctv/inst/doc/ctv-howto.Rnw | 12 ctv-0.8-4/ctv/inst/doc/ctv-howto.pdf | 213 ++++++------- ctv-0.8-4/ctv/vignettes/ctv-howto.Rnw | 12 38 files changed, 1271 insertions(+), 634 deletions(-)
Title: 'Java' Data Exchange for 'R' and 'rJava'
Description: Simplifies and extends data exchange between 'R' and 'Java'.
Author: Floid R. Gilbert [aut, cre],
David B. Dahl [aut]
Maintainer: Floid R. Gilbert <floid.r.gilbert@gmail.com>
Diff between jdx versions 0.1.0 dated 2018-01-09 and 0.1.1 dated 2018-01-18
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/Introduction.Rmd | 4 +++- inst/doc/Introduction.html | 3 ++- vignettes/Introduction.Rmd | 4 +++- 5 files changed, 16 insertions(+), 11 deletions(-)
Title: Calculating Proportionality Between Vectors of Compositional
Data
Description: The bioinformatic evaluation of gene co-expression often begins with
correlation-based analyses. However, this approach lacks statistical validity
when applied to relative data. This includes, for example, biological count data
generated by high-throughput RNA-sequencing, chromatin immunoprecipitation (ChIP),
ChIP-sequencing, Methyl-Capture sequencing, and other techniques. This package
implements several metrics for proportionality, including
phi [Lovell et al (2015) <DOI:10.1371/journal.pcbi.1004075>] and
rho [Erb and Notredame (2016) <DOI:10.1007/s12064-015-0220-8>]. This package also
implements several metrics for differential proportionality. Unlike correlation,
these measures give the same result for both relative and absolute data.
Author: Thomas Quinn [aut, cre],
David Lovell [aut],
Ionas Erb [aut],
Anders Bilgrau [ctb],
Greg Gloor [ctb]
Maintainer: Thomas Quinn <contacttomquinn@gmail.com>
Diff between propr versions 3.1.2 dated 2017-12-14 and 3.1.4 dated 2018-01-18
DESCRIPTION | 6 +- MD5 | 50 +++++++++++---------- NAMESPACE | 1 NEWS.md | 11 ++++ R/RcppExports.R | 4 + R/global.R | 21 +++++++++ R/propr.R | 8 +++ build/vignette.rds |binary inst/doc/a_introduction.html | 18 +++---- inst/doc/b_visualization.html | 10 ++-- inst/doc/c_indexing.html | 88 +++++++++++++++++++------------------- inst/doc/d_advanced.html | 78 ++++++++++++++++----------------- inst/doc/e_differential.html | 40 ++++++++--------- inst/doc/f_moderation.R | 12 +---- inst/doc/f_moderation.Rmd | 10 +--- inst/doc/f_moderation.html | 20 +++----- inst/doc/g_questions.html | 16 +++--- man/ratios.Rd |only src/RcppExports.cpp | 11 ++++ src/backend.cpp | 20 ++++++++ tests/testthat/test-aldex2propr.R | 2 tests/testthat/test-half2mat.R | 4 - tests/testthat/test-lr2propr.R | 18 +++---- tests/testthat/test-propd.R | 15 +++--- tests/testthat/test-ratios.R |only tests/testthat/test-theta.R | 45 ++++++++++--------- vignettes/f_moderation.Rmd | 10 +--- 27 files changed, 293 insertions(+), 225 deletions(-)
Title: Interface to 'TensorFlow' Estimators
Description: Interface to 'TensorFlow' Estimators
<https://www.tensorflow.org/programmers_guide/estimators>, a high-level
API that provides implementations of many different model types
including linear models and deep neural networks.
Author: JJ Allaire [aut, cre],
Yuan Tang [aut],
Kevin Ushey [aut],
Kevin Kuo [aut],
Daniel Falbel [ctb, cph],
RStudio [cph, fnd],
Google Inc. [cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between tfestimators versions 1.4.2 dated 2017-12-20 and 1.5 dated 2018-01-18
DESCRIPTION | 6 +- MD5 | 32 ++++++++------ NAMESPACE | 1 R/keras_estimator.R |only R/session_run_hooks_custom.R | 4 - R/tf_estimator.R | 77 ++++++++++++++++++++++++---------- README.md | 1 build/vignette.rds |binary inst/doc/dataset_api.R |only inst/doc/dataset_api.Rmd |only inst/doc/dataset_api.html |only inst/doc/estimator_basics.R | 17 +++++++ inst/doc/estimator_basics.Rmd | 31 +++++++++++-- inst/doc/estimator_basics.html | 29 +++++++++--- inst/doc/tensorflow_layers.html | 2 man/export_savedmodel.tf_estimator.Rd | 12 +++-- man/keras_model_to_estimator.Rd |only tests/testthat/test-save.R | 2 vignettes/dataset_api.Rmd |only vignettes/estimator_basics.Rmd | 31 +++++++++++-- 20 files changed, 179 insertions(+), 66 deletions(-)
Title: Fixed Effects Nonlinear Maximum Likelihood Models
Description: Efficient estimation of multiple fixed-effects maximum likelihood models
with, possibly, non-linear in parameters right hand sides. Standard-errors
can easily be clustered. It also includes tools to seamlessly export (to Latex)
the results of various estimations.
Author: Laurent Berge
Maintainer: Laurent Berge <laurent.berge@uni.lu>
Diff between FENmlm versions 1.0 dated 2015-10-03 and 2.0 dated 2018-01-18
FENmlm-1.0/FENmlm/man/feNmlm.Rd |only FENmlm-1.0/FENmlm/man/print.feNmlm.Rd |only FENmlm-1.0/FENmlm/man/summary.nlglm.Rd |only FENmlm-2.0/FENmlm/DESCRIPTION | 22 FENmlm-2.0/FENmlm/MD5 | 30 FENmlm-2.0/FENmlm/NAMESPACE | 26 FENmlm-2.0/FENmlm/R/ML_Families.R | 569 ++++--- FENmlm-2.0/FENmlm/R/MiscFuns.R | 1809 +++++++++++++++++++----- FENmlm-2.0/FENmlm/R/RcppExports.R |only FENmlm-2.0/FENmlm/R/feNmlm.R | 2459 ++++++++++++++++++++------------- FENmlm-2.0/FENmlm/data |only FENmlm-2.0/FENmlm/inst |only FENmlm-2.0/FENmlm/man/femlm.Rd | 224 +-- FENmlm-2.0/FENmlm/man/getFE.Rd | 55 FENmlm-2.0/FENmlm/man/print.femlm.Rd |only FENmlm-2.0/FENmlm/man/res2table.Rd | 107 - FENmlm-2.0/FENmlm/man/res2tex.Rd | 142 - FENmlm-2.0/FENmlm/man/summary.femlm.Rd |only FENmlm-2.0/FENmlm/man/trade.Rd |only FENmlm-2.0/FENmlm/src |only 20 files changed, 3657 insertions(+), 1786 deletions(-)
Title: Mixed-Effect Models, Particularly Spatial Models
Description: Inference in mixed-effect models, including generalized linear mixed models with spatial correlations and models with non-Gaussian random effects (e.g., Beta-Binomial). Variation in residual variance (heteroscedasticity) can itself be represented by a generalized linear mixed model. Various approximations of likelihood or restricted likelihood are implemented, in particular h-likelihood (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>) and Laplace approximation.
Author: François Rousset [aut, cre, cph],
Jean-Baptiste Ferdy [aut, cph],
Alexandre Courtiol [aut],
GSL authors [ctb] (src/gsl_bessel.*)
Maintainer: François Rousset <francois.rousset@umontpellier.fr>
Diff between spaMM versions 2.2.0 dated 2017-10-03 and 2.3.0 dated 2018-01-18
spaMM-2.2.0/spaMM/R/TDT..R |only spaMM-2.2.0/spaMM/R/calc_logdisp_cov_old.R |only spaMM-2.2.0/spaMM/R/is.diagonal.R |only spaMM-2.2.0/spaMM/R/pastefrom.R |only spaMM-2.2.0/spaMM/R/slashTerms.R |only spaMM-2.2.0/spaMM/R/structures.R |only spaMM-2.2.0/spaMM/R/subbarsMM.R |only spaMM-2.2.0/spaMM/src/corMatern.cpp |only spaMM-2.2.0/spaMM/src/init.c |only spaMM-2.2.0/spaMM/tests/testthat/test-LevM-and-sparse.R |only spaMM-2.2.0/spaMM/tests/testthat/test-sparsePrecision.R |only spaMM-2.3.0/spaMM/DESCRIPTION | 20 spaMM-2.3.0/spaMM/MD5 | 262 +-- spaMM-2.3.0/spaMM/NAMESPACE | 20 spaMM-2.3.0/spaMM/R/COMPoisson.R | 413 ++++- spaMM-2.3.0/spaMM/R/CanonizeRanPars.R | 101 - spaMM-2.3.0/spaMM/R/GLM.fit.R | 6 spaMM-2.3.0/spaMM/R/HLCor.R | 46 spaMM-2.3.0/spaMM/R/HLCor_body.R | 312 ---- spaMM-2.3.0/spaMM/R/HLFactorList.R | 232 ++- spaMM-2.3.0/spaMM/R/HLfit.R | 16 spaMM-2.3.0/spaMM/R/HLfit_Internals.R | 712 ++++++---- spaMM-2.3.0/spaMM/R/HLfit_b_internals.R | 45 spaMM-2.3.0/spaMM/R/HLfit_body.R | 376 ++--- spaMM-2.3.0/spaMM/R/HLframes.R | 194 +- spaMM-2.3.0/spaMM/R/LR.R | 31 spaMM-2.3.0/spaMM/R/MakeCovEst.R | 192 +- spaMM-2.3.0/spaMM/R/RcppExports.R | 60 spaMM-2.3.0/spaMM/R/bloc_lambda.R | 2 spaMM-2.3.0/spaMM/R/calc_LRT.R | 24 spaMM-2.3.0/spaMM/R/calc_logdisp_cov.R | 257 ++- spaMM-2.3.0/spaMM/R/confint.R | 54 spaMM-2.3.0/spaMM/R/corMatern.R | 368 ++--- spaMM-2.3.0/spaMM/R/corrHLfit-internals.R | 323 ++-- spaMM-2.3.0/spaMM/R/corrHLfit.R | 64 spaMM-2.3.0/spaMM/R/corrHLfit_body.R | 203 +- spaMM-2.3.0/spaMM/R/corrMM.LRT.R | 3 spaMM-2.3.0/spaMM/R/correlationFns.R | 67 spaMM-2.3.0/spaMM/R/cov_new_fix.R | 343 ++-- spaMM-2.3.0/spaMM/R/determine_spprec.R |only spaMM-2.3.0/spaMM/R/expandSlash.R | 51 spaMM-2.3.0/spaMM/R/extractors.R | 180 +- spaMM-2.3.0/spaMM/R/fit_as_ZX.R | 73 - spaMM-2.3.0/spaMM/R/fit_as_sparsePrecision.R | 85 - spaMM-2.3.0/spaMM/R/fitme.R | 43 spaMM-2.3.0/spaMM/R/fitme_body.R | 368 ++--- spaMM-2.3.0/spaMM/R/fitmecorrHLfit_body_internals.R | 237 +-- spaMM-2.3.0/spaMM/R/generateName.R | 4 spaMM-2.3.0/spaMM/R/geo_info.R |only spaMM-2.3.0/spaMM/R/locoptim.R | 158 +- spaMM-2.3.0/spaMM/R/multinomial.R | 4 spaMM-2.3.0/spaMM/R/negbin.R | 88 + spaMM-2.3.0/spaMM/R/newPLS.R | 97 - spaMM-2.3.0/spaMM/R/poisson.R |only spaMM-2.3.0/spaMM/R/precision_internals.R | 31 spaMM-2.3.0/spaMM/R/predict.R | 610 +++++--- spaMM-2.3.0/spaMM/R/predictor.R | 13 spaMM-2.3.0/spaMM/R/preprocess.R | 765 +++++++---- spaMM-2.3.0/spaMM/R/preprocess_internals.R | 10 spaMM-2.3.0/spaMM/R/profile.R | 30 spaMM-2.3.0/spaMM/R/sXaug_EigenDense_QRP_Chol_scaled.R | 6 spaMM-2.3.0/spaMM/R/sXaug_Matrix_QRP_CHM.R | 12 spaMM-2.3.0/spaMM/R/sXaug_sparsePrecisions.R | 377 +++-- spaMM-2.3.0/spaMM/R/save.R | 47 spaMM-2.3.0/spaMM/R/separator.R | 9 spaMM-2.3.0/spaMM/R/simulate.HL.R | 93 - spaMM-2.3.0/spaMM/R/spaMM.data.R | 15 spaMM-2.3.0/spaMM/R/sparseX.R |only spaMM-2.3.0/spaMM/R/summary.HL.R | 235 +-- spaMM-2.3.0/spaMM/R/update.HL.R | 24 spaMM-2.3.0/spaMM/R/utils.R | 9 spaMM-2.3.0/spaMM/inst/NEWS.Rd | 50 spaMM-2.3.0/spaMM/man/COMPoisson.Rd | 28 spaMM-2.3.0/spaMM/man/HLCor.Rd | 40 spaMM-2.3.0/spaMM/man/HLfit.Rd | 25 spaMM-2.3.0/spaMM/man/Loaloa.Rd | 20 spaMM-2.3.0/spaMM/man/Matern.corr.Rd | 1 spaMM-2.3.0/spaMM/man/Predictor.Rd | 6 spaMM-2.3.0/spaMM/man/anova.HLfit.Rd | 7 spaMM-2.3.0/spaMM/man/arabidopsis.Rd | 10 spaMM-2.3.0/spaMM/man/autoregressive.Rd | 37 spaMM-2.3.0/spaMM/man/blackcap.Rd | 2 spaMM-2.3.0/spaMM/man/confint.Rd | 2 spaMM-2.3.0/spaMM/man/corMatern.Rd | 8 spaMM-2.3.0/spaMM/man/corrHLfit.Rd | 6 spaMM-2.3.0/spaMM/man/corrMatrix.Rd | 2 spaMM-2.3.0/spaMM/man/covStruct.Rd | 2 spaMM-2.3.0/spaMM/man/designL.from.Corr.Rd | 2 spaMM-2.3.0/spaMM/man/extractors.Rd | 17 spaMM-2.3.0/spaMM/man/fitme.Rd | 24 spaMM-2.3.0/spaMM/man/fixed.LRT.Rd | 4 spaMM-2.3.0/spaMM/man/fixed.Rd |only spaMM-2.3.0/spaMM/man/freight.Rd | 2 spaMM-2.3.0/spaMM/man/inverse.Gamma.Rd | 2 spaMM-2.3.0/spaMM/man/make.scaled.dist.Rd | 2 spaMM-2.3.0/spaMM/man/mapMM.Rd | 4 spaMM-2.3.0/spaMM/man/multinomial.Rd | 2 spaMM-2.3.0/spaMM/man/negbin.Rd | 22 spaMM-2.3.0/spaMM/man/options.Rd | 9 spaMM-2.3.0/spaMM/man/pedigree.Rd | 11 spaMM-2.3.0/spaMM/man/plot.HL.Rd | 2 spaMM-2.3.0/spaMM/man/poisson.Rd |only spaMM-2.3.0/spaMM/man/predict.Rd | 15 spaMM-2.3.0/spaMM/man/rankinfo.Rd |only spaMM-2.3.0/spaMM/man/salamander.Rd | 10 spaMM-2.3.0/spaMM/man/scotlip.Rd | 8 spaMM-2.3.0/spaMM/man/seaMask.Rd | 12 spaMM-2.3.0/spaMM/man/seeds.Rd | 4 spaMM-2.3.0/spaMM/man/simulate.HLCor.Rd | 4 spaMM-2.3.0/spaMM/man/spaMM-internal.Rd | 61 spaMM-2.3.0/spaMM/man/spaMM.Rd | 14 spaMM-2.3.0/spaMM/man/stripHLfit.Rd | 2 spaMM-2.3.0/spaMM/man/summary.HL.Rd | 5 spaMM-2.3.0/spaMM/man/update.Rd | 2 spaMM-2.3.0/spaMM/man/wafers.Rd | 2 spaMM-2.3.0/spaMM/man/welding.Rd | 2 spaMM-2.3.0/spaMM/src/RcppExports.cpp | 119 + spaMM-2.3.0/spaMM/src/gsl_bessel.cpp | 36 spaMM-2.3.0/spaMM/src/spaMM_linear.cpp | 31 spaMM-2.3.0/spaMM/tests/test-all.R | 8 spaMM-2.3.0/spaMM/tests/testthat/test-AR1.R |only spaMM-2.3.0/spaMM/tests/testthat/test-CAR.R | 6 spaMM-2.3.0/spaMM/tests/testthat/test-COMPoisson.R | 20 spaMM-2.3.0/spaMM/tests/testthat/test-HLCor.R | 21 spaMM-2.3.0/spaMM/tests/testthat/test-HLfit.R | 2 spaMM-2.3.0/spaMM/tests/testthat/test-LRT-boot.R | 4 spaMM-2.3.0/spaMM/tests/testthat/test-Nugget.R | 5 spaMM-2.3.0/spaMM/tests/testthat/test-Rasch.R | 6 spaMM-2.3.0/spaMM/tests/testthat/test-adjacency-corrMatrix.R |only spaMM-2.3.0/spaMM/tests/testthat/test-adjacency-long.R |only spaMM-2.3.0/spaMM/tests/testthat/test-cloglog.R | 14 spaMM-2.3.0/spaMM/tests/testthat/test-confint.R | 47 spaMM-2.3.0/spaMM/tests/testthat/test-corMatern.R | 9 spaMM-2.3.0/spaMM/tests/testthat/test-filled.mapMM.R | 5 spaMM-2.3.0/spaMM/tests/testthat/test-fixedLRT.R | 4 spaMM-2.3.0/spaMM/tests/testthat/test-inverse.Gamma.R | 2 spaMM-2.3.0/spaMM/tests/testthat/test-pedigree.R |only spaMM-2.3.0/spaMM/tests/testthat/test-predVar.R | 21 spaMM-2.3.0/spaMM/tests/testthat/test-random-slope.R | 26 spaMM-2.3.0/spaMM/tests/testthat/test-rank.R |only spaMM-2.3.0/spaMM/tests/testthat/test-salamander.R | 4 spaMM-2.3.0/spaMM/tests/testthat/test-sp-nsp.R | 2 spaMM-2.3.0/spaMM/tests/testthat/test-spaMM.R | 6 spaMM-2.3.0/spaMM/tests/testthat/test-truncated.R |only 144 files changed, 5230 insertions(+), 4078 deletions(-)
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington.
Maintainer: Chris Fraley <fraley@u.washington.edu>
Diff between ensembleBMA versions 5.1.4 dated 2017-03-19 and 5.1.5 dated 2018-01-18
CHANGELOG | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- inst |only man/plotProbcast.Rd | 4 ++-- 5 files changed, 13 insertions(+), 9 deletions(-)
Title: Deriving Expressions of Joint Interventional Distributions and
Transport Formulas in Causal Models
Description: Functions for identification and transportation of causal effects. Provides a conditional causal effect identification algorithm (IDC) by Shpitser, I. and Pearl, J. (2006) <http://ftp.cs.ucla.edu/pub/stat_ser/r329-uai.pdf>, an algorithm for transportability from multiple domains with limited experiments by Bareinboim, E. and Pearl, J. (2014) <http://ftp.cs.ucla.edu/pub/stat_ser/r443.pdf> and a selection bias recovery algorithm by Bareinboim, E. and Tian, J. (2015) <http://ftp.cs.ucla.edu/pub/stat_ser/r445.pdf>. All of the previously mentioned algorithms are based on a causal effect identification algorithm by Tian , J. (2002) <http://ftp.cs.ucla.edu/pub/stat_ser/r309.pdf>.
Author: Santtu Tikka
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between causaleffect versions 1.3.5 dated 2017-09-11 and 1.3.6 dated 2018-01-18
DESCRIPTION | 8 +-- MD5 | 24 +++++------ NEWS | 4 + R/causal.effect.R | 7 ++- R/deconstruct.R | 89 +++++++++++++++++++++++--------------------- R/generalize.R | 10 +++- R/parse.expression.R | 2 R/recover.R | 3 + R/transport.R | 3 + R/verma.constraints.R | 3 + R/zzaux.effect.R | 3 + inst/doc/causaleffect.pdf |binary inst/doc/simplification.pdf |binary 13 files changed, 93 insertions(+), 63 deletions(-)
Title: Soft Maximin Estimation for Large Scale Array-Tensor Models
Description: Efficient design matrix free procedure for solving a soft maximin problem for large scale array-tensor structured models. Currently Lasso and SCAD penalized estimation is implemented.
Author: Adam Lund
Maintainer: Adam Lund <adam.lund@math.ku.dk>
Diff between SMMA versions 1.0.1 dated 2017-03-30 and 1.0.2 dated 2018-01-18
DESCRIPTION | 14 +-- MD5 | 26 ++--- NAMESPACE | 2 R/RcppExports.R | 2 R/SMMA.R | 241 +++++++++++++++++++++++++++------------------------- R/SMMA_predict.R | 114 ++++++++++++------------ man/RH.Rd | 11 +- man/SMMA.Rd | 98 ++++++++++----------- man/predict.SMMA.Rd | 28 ++---- man/print.SMMA.Rd | 1 src/RcppExports.cpp | 2 src/auxfunc.h | 94 ++++++++++---------- src/init.c | 4 src/rcppfunc.cpp | 32 ++---- 14 files changed, 335 insertions(+), 334 deletions(-)
Title: Generalized Polynomial Modelling
Description: Platform dedicated to the Global Modelling technique. Its aim is to
obtain ordinary differential equations of polynomial form directly from
time series. It can be applied to single or multiple time series under various
conditions of noise, time series lengths, sampling, etc. This platform
is developped at the Centre d'Etudes Spatiales de la Biosphere (CESBIO), UMR 5126
UPS/CNRS/CNES/IRD, 18 av. Edouard Belin, 31401 TOULOUSE, FRANCE.
The developments were funded by the French program Les Enveloppes
Fluides et l'Environnement (LEFE, MANU, projets GloMo, SpatioGloMo and MoMu).
The French program Defi InFiNiTi (CNRS) and PNTS are also acknowledged
(projects Crops'IChaos and Musc & SlowFast).
Author: Sylvain Mangiarotti [aut], Flavie Le Jean [ctb], Malika Chassan [ctb],
Laurent Drapeau [ctb], Mireille Huc [cre]
Maintainer: Mireille Huc <mireille.huc@cesbio.cnes.fr>
Diff between GPoM versions 1.0 dated 2017-04-04 and 1.1 dated 2018-01-18
GPoM-1.0/GPoM/R/lorenz-data.R |only GPoM-1.0/GPoM/R/rossler-data.R |only GPoM-1.0/GPoM/R/sprottK-data.R |only GPoM-1.0/GPoM/data/lorenz.rda |only GPoM-1.0/GPoM/data/rossler.rda |only GPoM-1.0/GPoM/data/sprottK.rda |only GPoM-1.0/GPoM/inst/doc/GeneralIntro.html |only GPoM-1.0/GPoM/inst/doc/III_Modelling.html |only GPoM-1.0/GPoM/inst/doc/II_PreProcessing.html |only GPoM-1.0/GPoM/inst/doc/IV_VisualizeOutputs.html |only GPoM-1.0/GPoM/inst/doc/I_Generate.html |only GPoM-1.0/GPoM/inst/doc/V_Predictability.html |only GPoM-1.0/GPoM/man/GPoM.Rd |only GPoM-1.0/GPoM/man/lorenz-1963-time-series.Rd |only GPoM-1.0/GPoM/man/sprottK-time-series.Rd |only GPoM-1.0/GPoM/tests |only GPoM-1.1/GPoM/DESCRIPTION | 27 GPoM-1.1/GPoM/MD5 | 217 +-- GPoM-1.1/GPoM/NAMESPACE | 70 - GPoM-1.1/GPoM/R/GPoM-package.R | 206 +-- GPoM-1.1/GPoM/R/GSproc.R | 83 - GPoM-1.1/GPoM/R/NDVI-data.R | 36 GPoM-1.1/GPoM/R/RosYco-data.R | 42 GPoM-1.1/GPoM/R/Ross76-data.R | 62 GPoM-1.1/GPoM/R/TSallMod_nVar3_dMax2-data.R |only GPoM-1.1/GPoM/R/allMod_nVar3_dMax2-data.R |only GPoM-1.1/GPoM/R/allToTest-data.R | 54 GPoM-1.1/GPoM/R/autoGPoMoSearch.R | 198 +-- GPoM-1.1/GPoM/R/autoGPoMoTest.R | 546 ++++---- GPoM-1.1/GPoM/R/bDrvFilt.R | 74 - GPoM-1.1/GPoM/R/cano2M.R | 84 - GPoM-1.1/GPoM/R/compDeriv.R | 116 - GPoM-1.1/GPoM/R/d2pMax.R | 74 - GPoM-1.1/GPoM/R/data_vignetteIII-data.R |only GPoM-1.1/GPoM/R/data_vignetteVI-data.R |only GPoM-1.1/GPoM/R/data_vignetteVII-data.R |only GPoM-1.1/GPoM/R/derivODE2.R | 98 - GPoM-1.1/GPoM/R/detectP1limCycl.R | 185 +- GPoM-1.1/GPoM/R/drvSucc.R | 278 ++-- GPoM-1.1/GPoM/R/findAllSets.R | 243 ++- GPoM-1.1/GPoM/R/gPoMo.R | 616 +++++---- GPoM-1.1/GPoM/R/gloMoId.R | 495 +++---- GPoM-1.1/GPoM/R/numicano.R | 233 +-- GPoM-1.1/GPoM/R/numinoisy.R | 414 +++--- GPoM-1.1/GPoM/R/odeBruitMult2.R | 154 +- GPoM-1.1/GPoM/R/p2dMax.R | 121 - GPoM-1.1/GPoM/R/paramId.R | 86 - GPoM-1.1/GPoM/R/poLabs.R | 157 +- GPoM-1.1/GPoM/R/predictab.R | 592 +++++---- GPoM-1.1/GPoM/R/regOrd.R | 97 - GPoM-1.1/GPoM/R/regSeries.R | 148 +- GPoM-1.1/GPoM/R/visuEq.R | 292 ++-- GPoM-1.1/GPoM/R/visuOutGP.R | 479 +++---- GPoM-1.1/GPoM/R/wInProd.R | 78 - GPoM-1.1/GPoM/build/vignette.rds |binary GPoM-1.1/GPoM/data/TSallMod_nVar3_dMax2.RData |only GPoM-1.1/GPoM/data/allMod_nVar3_dMax2.RData |only GPoM-1.1/GPoM/data/data_vignetteIII.rda |only GPoM-1.1/GPoM/data/data_vignetteVI.rda |only GPoM-1.1/GPoM/data/data_vignetteVII.rda |only GPoM-1.1/GPoM/data/datalist |only GPoM-1.1/GPoM/inst/doc/GeneralIntro.Rmd | 332 +++-- GPoM-1.1/GPoM/inst/doc/GeneralIntro.pdf |only GPoM-1.1/GPoM/inst/doc/III_Modelling.R | 518 ++++---- GPoM-1.1/GPoM/inst/doc/III_Modelling.Rmd | 1308 +++++++++++---------- GPoM-1.1/GPoM/inst/doc/III_Modelling.pdf |only GPoM-1.1/GPoM/inst/doc/II_PreProcessing.R | 316 ++--- GPoM-1.1/GPoM/inst/doc/II_PreProcessing.Rmd | 856 +++++++------ GPoM-1.1/GPoM/inst/doc/II_PreProcessing.pdf |only GPoM-1.1/GPoM/inst/doc/IV_VisualizeOutputs.R | 196 +-- GPoM-1.1/GPoM/inst/doc/IV_VisualizeOutputs.Rmd | 483 +++---- GPoM-1.1/GPoM/inst/doc/IV_VisualizeOutputs.pdf |only GPoM-1.1/GPoM/inst/doc/I_Generate.R | 173 +- GPoM-1.1/GPoM/inst/doc/I_Generate.Rmd | 476 +++---- GPoM-1.1/GPoM/inst/doc/I_Generate.pdf |only GPoM-1.1/GPoM/inst/doc/VII_Retro-modelling.R |only GPoM-1.1/GPoM/inst/doc/VII_Retro-modelling.Rmd |only GPoM-1.1/GPoM/inst/doc/VII_Retro-modelling.pdf |only GPoM-1.1/GPoM/inst/doc/VI_Sensitivity.R |only GPoM-1.1/GPoM/inst/doc/VI_Sensitivity.Rmd |only GPoM-1.1/GPoM/inst/doc/VI_Sensitivity.pdf |only GPoM-1.1/GPoM/inst/doc/V_Predictability.R | 193 +-- GPoM-1.1/GPoM/inst/doc/V_Predictability.Rmd | 539 ++++---- GPoM-1.1/GPoM/inst/doc/V_Predictability.pdf |only GPoM-1.1/GPoM/man/GPoM-package.Rd |only GPoM-1.1/GPoM/man/GSproc.Rd | 73 - GPoM-1.1/GPoM/man/NDVI.Rd | 51 GPoM-1.1/GPoM/man/RosYco.Rd | 57 GPoM-1.1/GPoM/man/Rossler-1976-data-set.Rd | 99 - GPoM-1.1/GPoM/man/TSallMod_nVar3_dMax2-data-set.Rd |only GPoM-1.1/GPoM/man/allMod_nVar3_dMax2-data-set.Rd |only GPoM-1.1/GPoM/man/allToTest.Rd | 75 - GPoM-1.1/GPoM/man/autoGPoMoSearch.Rd | 142 +- GPoM-1.1/GPoM/man/autoGPoMoTest.Rd | 194 +-- GPoM-1.1/GPoM/man/bDrvFilt.Rd | 53 GPoM-1.1/GPoM/man/cano2M.Rd | 72 - GPoM-1.1/GPoM/man/compDeriv.Rd | 89 - GPoM-1.1/GPoM/man/d2pMax.Rd | 88 - GPoM-1.1/GPoM/man/data_vignetteIII-data-set.Rd |only GPoM-1.1/GPoM/man/data_vignetteVI-data-set.Rd |only GPoM-1.1/GPoM/man/data_vignetteVII-data-set.Rd |only GPoM-1.1/GPoM/man/derivODE2.Rd | 77 - GPoM-1.1/GPoM/man/detectP1limCycl.Rd | 57 GPoM-1.1/GPoM/man/drvSucc.Rd | 240 +-- GPoM-1.1/GPoM/man/findAllSets.Rd | 129 +- GPoM-1.1/GPoM/man/gPoMo.Rd | 415 +++--- GPoM-1.1/GPoM/man/gloMoId.Rd | 348 ++--- GPoM-1.1/GPoM/man/numicano.Rd | 219 +-- GPoM-1.1/GPoM/man/numinoisy.Rd | 269 ++-- GPoM-1.1/GPoM/man/odeBruitMult2.Rd | 99 - GPoM-1.1/GPoM/man/p2dMax.Rd | 102 - GPoM-1.1/GPoM/man/paramId.Rd | 49 GPoM-1.1/GPoM/man/poLabs.Rd | 103 - GPoM-1.1/GPoM/man/predictab.Rd | 159 +- GPoM-1.1/GPoM/man/regOrd.Rd | 68 - GPoM-1.1/GPoM/man/regSeries.Rd | 91 - GPoM-1.1/GPoM/man/visuEq.Rd | 140 +- GPoM-1.1/GPoM/man/visuOutGP.Rd | 105 - GPoM-1.1/GPoM/man/wInProd.Rd | 77 - GPoM-1.1/GPoM/vignettes/GeneralIntro.Rmd | 332 +++-- GPoM-1.1/GPoM/vignettes/III_Modelling.Rmd | 1308 +++++++++++---------- GPoM-1.1/GPoM/vignettes/II_PreProcessing.Rmd | 856 +++++++------ GPoM-1.1/GPoM/vignettes/IV_VisualizeOutputs.Rmd | 483 +++---- GPoM-1.1/GPoM/vignettes/I_Generate.Rmd | 476 +++---- GPoM-1.1/GPoM/vignettes/VII_Retro-modelling.Rmd |only GPoM-1.1/GPoM/vignettes/VI_Sensitivity.Rmd |only GPoM-1.1/GPoM/vignettes/V_Predictability.Rmd | 539 ++++---- 127 files changed, 10304 insertions(+), 9475 deletions(-)
Title: R Package for Designing and Analyzing Randomized Experiments
Description: Provides various statistical methods for
designing and analyzing randomized experiments. One main functionality
of the package is the implementation of randomized-block and
matched-pair designs based on possibly multivariate pre-treatment
covariates. The package also provides the tools to analyze various
randomized experiments including cluster randomized experiments,
randomized experiments with noncompliance, and randomized experiments
with missing data.
Author: Kosuke Imai [aut, cre],
Zhichao Jiang [ctb]
Maintainer: Kosuke Imai <kimai@princeton.edu>
Diff between experiment versions 1.1-1 dated 2013-03-29 and 1.1-2 dated 2018-01-18
DESCRIPTION | 36 +-- MD5 | 51 ++-- NAMESPACE | 63 +++-- R/ATEbounds.R | 75 ++++++ R/ATEcluster.R | 76 ++++++ R/ATEnocov.R | 35 ++ R/ATOPbasic.R |only R/ATOPnoassumption.R |only R/ATOPobs.R |only R/ATOPsens.R |only R/CACEcluster.R | 53 ++++ R/NoncompLI.R | 179 +++++++++++++++ R/Seguro.R |only R/print.randomize.R | 1 R/print.summary.NoncompMAR.R | 1 R/randomize.R | 69 +++++ R/summary.NoncompMAR.R | 1 data |only man/ATEbounds.Rd | 228 +++++++------------ man/ATEcluster.Rd | 251 ++++++--------------- man/ATEnocov.Rd | 94 ++------ man/ATOPnoassumption.Rd |only man/ATOPobs.Rd |only man/ATOPsens.Rd |only man/CACEcluster.Rd | 174 +++++--------- man/NoncompLI.Rd | 505 ++++++++++++++++++------------------------- man/randomize.Rd | 177 +++++---------- man/seguro.Rd |only src/LInoncompMixed.c | 22 - src/MARnoncomp.c | 2 src/NIstandard.c | 4 src/init.c |only 32 files changed, 1135 insertions(+), 962 deletions(-)
Title: Zigzag Expanded Navigation Plots
Description: Graphical tools for visualizing high-dimensional data with a path of
pairs (note that this requires 'graph' from Bioconductor and R configured
with Tcl/Tk support).
Author: Marius Hofert [aut, cre], Wayne Oldford [aut]
Maintainer: Marius Hofert <marius.hofert@uwaterloo.ca>
Diff between zenplots versions 0.0-1 dated 2016-12-16 and 0.0-2 dated 2018-01-18
zenplots-0.0-1/zenplots/man/extreme_pairs.Rd |only zenplots-0.0-1/zenplots/man/scale01.Rd |only zenplots-0.0-2/zenplots/DESCRIPTION | 16 zenplots-0.0-2/zenplots/MD5 | 56 +- zenplots-0.0-2/zenplots/NAMESPACE | 64 +-- zenplots-0.0-2/zenplots/R/auxiliaries.R | 100 ---- zenplots-0.0-2/zenplots/R/getlayout.R | 36 - zenplots-0.0-2/zenplots/R/getpath.R | 177 +++++--- zenplots-0.0-2/zenplots/R/plot1dloon.R |only zenplots-0.0-2/zenplots/R/plot2dgrid.R | 2 zenplots-0.0-2/zenplots/R/plot2dloon.R |only zenplots-0.0-2/zenplots/R/tools.R | 73 +-- zenplots-0.0-2/zenplots/R/tools_grid.R | 5 zenplots-0.0-2/zenplots/R/tools_loon.R |only zenplots-0.0-2/zenplots/R/zenpath.R | 171 +++----- zenplots-0.0-2/zenplots/R/zenplot.R | 338 ++++++++-------- zenplots-0.0-2/zenplots/TODO | 124 ----- zenplots-0.0-2/zenplots/build/vignette.rds |binary zenplots-0.0-2/zenplots/demo/SP500.R | 200 +++++++-- zenplots-0.0-2/zenplots/inst/doc/intro.R | 66 +-- zenplots-0.0-2/zenplots/inst/doc/intro.Rmd | 96 +--- zenplots-0.0-2/zenplots/inst/doc/intro.html | 170 +++----- zenplots-0.0-2/zenplots/inst/doc/selected_features.R |only zenplots-0.0-2/zenplots/inst/doc/selected_features.Rmd |only zenplots-0.0-2/zenplots/inst/doc/selected_features.html |only zenplots-0.0-2/zenplots/man/burst.Rd | 64 +-- zenplots-0.0-2/zenplots/man/de_elect.Rd | 2 zenplots-0.0-2/zenplots/man/extract.Rd | 4 zenplots-0.0-2/zenplots/man/olive.Rd | 2 zenplots-0.0-2/zenplots/man/plots_loon.Rd |only zenplots-0.0-2/zenplots/man/zenpath.Rd | 25 - zenplots-0.0-2/zenplots/man/zenplot.Rd | 134 ++++-- zenplots-0.0-2/zenplots/vignettes/intro.Rmd | 96 +--- zenplots-0.0-2/zenplots/vignettes/selected_features.Rmd |only 34 files changed, 1019 insertions(+), 1002 deletions(-)
Title: Graphical User Interface (GUI) for Interactive R Analysis
Sessions
Description: Really Poor Man's Graphical User Interface, used to create interactive R analysis sessions with simple R commands.
Author: Jonathan M. Lees [aut, cre],
Jake Anderson [ctb]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RPMG versions 2.2-1 dated 2015-11-06 and 2.2-2 dated 2018-01-18
DESCRIPTION | 13 ++++++++----- MD5 | 2 +- 2 files changed, 9 insertions(+), 6 deletions(-)
Title: Geophysical Inverse Theory and Optimization
Description: Several functions introduced in Aster et al.'s book on inverse theory. The functions are often translations of MATLAB code developed by the authors to illustrate concepts of inverse theory as applied to geophysics. Generalized inversion, tomographic inversion algorithms (conjugate gradients, 'ART' and 'SIRT'), non-linear least squares, first and second order Tikhonov regularization, roughness constraints, and procedures for estimating smoothing parameters are included.
Author: Jonathan M. Lees [aut, cre]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between PEIP versions 2.0-1 dated 2015-06-10 and 2.2-1 dated 2018-01-18
PEIP-2.0-1/PEIP/R/rlsqr.R |only PEIP-2.0-1/PEIP/man/rlsqr.Rd |only PEIP-2.0-1/PEIP/src |only PEIP-2.0-1/PEIP/tests/trlsqr.R |only PEIP-2.2-1/PEIP/DESCRIPTION | 18 ++-- PEIP-2.2-1/PEIP/MD5 | 26 +------ PEIP-2.2-1/PEIP/NAMESPACE | 9 +- PEIP-2.2-1/PEIP/R/GSVD.R | 135 ++++--------------------------------- PEIP-2.2-1/PEIP/R/interp2grid.R | 9 +- PEIP-2.2-1/PEIP/man/GSVD.Rd | 28 +++++-- PEIP-2.2-1/PEIP/man/interp2grid.Rd | 6 - PEIP-2.2-1/PEIP/tests/tgsvd.R | 20 ++++- 12 files changed, 86 insertions(+), 165 deletions(-)
Title: Topographic and Geologic Mapping
Description: Set of routines for making Map Projections (forward and inverse), Topographic Maps, Perspective plots, Geological Maps, geological map symbols, geological databases, interactive plotting and selection of focus regions.
Author: Jonathan M. Lees [aut, cre]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between GEOmap versions 2.4-0 dated 2017-03-12 and 2.4-4 dated 2018-01-18
DESCRIPTION | 12 +++++++----- MD5 | 12 ++++++------ R/GlobeView.R | 4 ++-- R/lamaz.eqarea.R | 16 ++++++++++++++-- R/rose.R | 13 ++++++++++--- man/GlobeView.Rd | 3 ++- man/lamaz.eqarea.Rd | 17 ++++++++++++----- 7 files changed, 53 insertions(+), 24 deletions(-)
Title: An R-Tool for Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from SCOPUS (<http://scopus.com>) and
Clarivate Analytics Web of Science (<http://www.webofknowledge.com/>) databases, performing bibliometric analysis
and building data matrices for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 1.8 dated 2017-09-14 and 1.9 dated 2018-01-18
DESCRIPTION | 10 MD5 | 80 +-- NAMESPACE | 4 NEWS | 12 R/biblioAnalysis.R | 44 + R/biblioNetwork.R | 8 R/cocMatrix.R | 3 R/conceptualStructure.R | 2 R/convert2df.R | 82 +-- R/dominance.R | 2 R/histNetwork.R | 30 - R/histPlot.R | 18 R/isibib2df.R | 18 R/localCitations.R | 66 -- R/metaTagExtraction.R | 60 ++ R/networkPlot.R | 221 +++++--- R/pubmed2df.R |only R/zzz.R | 2 build/vignette.rds |binary data/biblio.rda |binary data/biblio_df.rda |binary data/countries.rda |binary data/garfield.rda |binary data/isiCollection.rda |binary data/scientometrics.rda |binary data/scientometrics_text.rda |binary data/scopusCollection.rda |binary data/stopwords.rda |binary inst/doc/bibliometrix-vignette.R | 14 inst/doc/bibliometrix-vignette.Rmd | 21 inst/doc/bibliometrix-vignette.html | 946 ++++++++++++++++++++++-------------- man/biblioNetwork.Rd | 8 man/cocMatrix.Rd | 3 man/convert2df.Rd | 39 - man/isi2df.Rd | 3 man/isibib2df.Rd | 3 man/localCitations.Rd | 17 man/metaTagExtraction.Rd | 3 man/networkPlot.Rd | 23 man/pubmed2df.Rd |only man/scopus2df.Rd | 3 vignettes/bibliometrix-vignette.Rmd | 21 42 files changed, 1059 insertions(+), 707 deletions(-)
Title: Seismic Reflection and Scattering Coefficients
Description: Calculate and plot scattering matrix coefficients for plane waves at interface.
Author: Jonathan M. Lees [aut, cre]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between zoeppritz versions 1.0-6 dated 2017-03-13 and 1.0-7 dated 2018-01-18
DESCRIPTION | 12 +++++++----- MD5 | 2 +- 2 files changed, 8 insertions(+), 6 deletions(-)
Title: Training Run Tools for 'TensorFlow'
Description: Create and manage unique directories for each 'TensorFlow'
training run. Provides a unique, time stamped directory for each run
along with functions to retrieve the directory of the latest run or
latest several runs.
Author: JJ Allaire [aut, cre],
RStudio [cph, fnd],
Mike Bostock [cph] (D3 library - https://d3js.org/),
Masayuki Tanaka [cph] (C3 library - http://c3js.org/),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [cph] (jQuery library; authors:
inst/views/components/jquery-AUTHORS.txt),
Shaun Bowe [cph] (jQuery visibilityChanged plugin),
Materialize [cph] (Materizlize library - https://materializecss.com/),
Yuxi You [cph] (Vue.js library - https://vuejs.org/),
Kevin Decker [cph] (jsdiff library -
https://github.com/kpdecker/jsdiff/),
Rodrigo Fernandes [cph] (diff2html library - https://diff2html.xyz/),
Ivan Sagalaev [cph] (highlight.js library - https://highlightjs.org/),
Yauheni Pakala [cph] (highlightjs-line-numbers library)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between tfruns versions 1.1 dated 2017-12-17 and 1.2 dated 2018-01-18
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/training_run.R | 2 +- inst/doc/overview.R | 9 +++------ inst/doc/overview.Rmd | 11 ++++------- inst/doc/overview.html | 11 ++++------- inst/views/components/metrics_charts.html | 6 ++++++ vignettes/overview.Rmd | 11 ++++------- 8 files changed, 32 insertions(+), 38 deletions(-)
Title: Detection of Structural Changes in Climate and Environment Time
Series
Description: Tools for automatic model selection and diagnostics for Climate and Environmental data. In particular the envcpt() function does automatic model selection between a variety of trend, changepoint and autocorrelation models. The envcpt() function should be your first port of call.
Author: Rebecca Killick [aut, cre],
Claudie Beaulieu [aut],
Simon Taylor [aut],
Harjit Hullait [aut]
Maintainer: Rebecca Killick <r.killick@lancs.ac.uk>
Diff between EnvCpt versions 0.1.1 dated 2016-10-13 and 1.0 dated 2018-01-18
EnvCpt-0.1.1/EnvCpt/R/LMregression.r |only EnvCpt-1.0/EnvCpt/DESCRIPTION | 15 +- EnvCpt-1.0/EnvCpt/MD5 | 21 +-- EnvCpt-1.0/EnvCpt/NAMESPACE | 2 EnvCpt-1.0/EnvCpt/NEWS | 9 + EnvCpt-1.0/EnvCpt/R/CptReg.R |only EnvCpt-1.0/EnvCpt/R/diagnostics.R | 142 ++++++++++++++--------- EnvCpt-1.0/EnvCpt/R/envcpt.R | 95 +++++++++++---- EnvCpt-1.0/EnvCpt/R/zzz.R |only EnvCpt-1.0/EnvCpt/man/envcpt-package.Rd | 4 EnvCpt-1.0/EnvCpt/man/envcpt.Rd | 24 ++- EnvCpt-1.0/EnvCpt/src |only EnvCpt-1.0/EnvCpt/tests/testthat/test-examples.R | 36 ++--- 13 files changed, 219 insertions(+), 129 deletions(-)
Title: Like base::sets Tools But Keeps Duplicate Elements
Description: The base 'sets' tools follow the algebraic definition
that each element of a set must be unique.
Since it's often helpful to compare all elements of two vectors,
this toolset treats every element as unique for counting purposes.
For ease of use, all functions in vecsets have an argument
'multiple' which, when set to FALSE,
reverts them to the base::set tools functionality.
Author: Carl Witthoft
Maintainer: Carl Witthoft <carl@witthoft.com>
Diff between vecsets versions 1.1 dated 2014-10-24 and 1.2.1 dated 2018-01-18
ChangeLog | 3 ++- DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 + R/vintersect.R | 8 ++++++-- R/vsetdiff.R | 14 +++++++++----- 6 files changed, 28 insertions(+), 18 deletions(-)
Title: Visualization for Seismic Tomography
Description: Aimed at seismic tomography, the package
plots tomographic images, and allows one to interact and query
three-dimensional tomographic models.
Vertical cross-sectional cuts can be extracted by mouse click.
Geographic information can be added easily.
Author: Jonathan M. Lees [aut, cre]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RTOMO versions 1.1-5 dated 2017-03-13 and 1.1-6 dated 2018-01-18
DESCRIPTION | 12 +++++++----- MD5 | 2 +- 2 files changed, 8 insertions(+), 6 deletions(-)
Title: Visualization for Norwegian Health Quality Registries
Description: Assists for presentation and visualization of data from the Norwegian Health Quality Registries following the standardization based on the requirement specified by the National Service for Health Quality Registries. This requirement can be accessed from (<https://www.kvalitetsregistre.no/resultater-til-publisering-pa-nett>). Unfortunately the website is only available in Norwegian.
Author: Yusman Kamaleri [aut, cre]
Maintainer: Yusman Kamaleri <ybkamaleri@gmail.com>
Diff between rreg versions 0.1.1 dated 2017-11-08 and 0.1.2 dated 2018-01-18
DESCRIPTION | 8 ++--- MD5 | 8 ++--- R/regbar.R | 62 ++++++++++++++++++++++++++++++--------- man/regbar.Rd | 13 ++++++-- tests/testthat/test_regbar_pos.R | 12 +++---- 5 files changed, 73 insertions(+), 30 deletions(-)
Title: Interface to 'REDCap'
Description: Access data stored in 'REDCap' databases using the Application
Programming Interface (API). 'REDCap' (Research Electronic Data CAPture;
<https://projectredcap.org>) is
a web application for building and managing online surveys and databases
developed at Vanderbilt University. The API allows users to access data
and project meta data (such as the data dictionary) from the web
programmatically. The 'redcapAPI' package facilitates the process of
accessing data with options to prepare an analysis-ready data set
consistent with the definitions in a database's data dictionary.
Author: Benjamin Nutter [aut, ctb, cre],
Stephen Lane [ctb],
Will Beasley [ctb],
Jeffrey Horner [ctb],
Will Gray [ctb],
Jeremy Stephens [ctb]
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between redcapAPI versions 1.3 dated 2015-03-14 and 2.0 dated 2018-01-18
redcapAPI-1.3/redcapAPI/R/allocationTable_offline.R |only redcapAPI-1.3/redcapAPI/R/apiCall.R |only redcapAPI-1.3/redcapAPI/R/compareRedcapVersion.R |only redcapAPI-1.3/redcapAPI/R/redcapProjectInfo.R |only redcapAPI-1.3/redcapAPI/man/apiCall.Rd |only redcapAPI-1.3/redcapAPI/man/redcapProjectInfo.Rd |only redcapAPI-1.3/redcapAPI/src |only redcapAPI-2.0/redcapAPI/DESCRIPTION | 43 redcapAPI-2.0/redcapAPI/MD5 | 123 + redcapAPI-2.0/redcapAPI/NAMESPACE | 26 redcapAPI-2.0/redcapAPI/NEWS | 51 redcapAPI-2.0/redcapAPI/R/allocationTable.R | 336 +++-- redcapAPI-2.0/redcapAPI/R/checkbox_suffixes.R |only redcapAPI-2.0/redcapAPI/R/deleteFiles.R | 114 + redcapAPI-2.0/redcapAPI/R/deprecated_recapProjectInfo.R |only redcapAPI-2.0/redcapAPI/R/exportArms.R | 155 +- redcapAPI-2.0/redcapAPI/R/exportBundle.R |only redcapAPI-2.0/redcapAPI/R/exportEvents.R | 133 +- redcapAPI-2.0/redcapAPI/R/exportFieldNames.R |only redcapAPI-2.0/redcapAPI/R/exportFiles.R | 220 ++- redcapAPI-2.0/redcapAPI/R/exportInstruments.R | 82 - redcapAPI-2.0/redcapAPI/R/exportMappings.R | 116 - redcapAPI-2.0/redcapAPI/R/exportMetaData.R | 125 -- redcapAPI-2.0/redcapAPI/R/exportPDF.R |only redcapAPI-2.0/redcapAPI/R/exportProjectInformation.R |only redcapAPI-2.0/redcapAPI/R/exportRecords.R | 746 +++++------- redcapAPI-2.0/redcapAPI/R/exportRecords_offline.R | 217 +-- redcapAPI-2.0/redcapAPI/R/exportReports.R | 204 ++- redcapAPI-2.0/redcapAPI/R/exportUsers.R | 220 ++- redcapAPI-2.0/redcapAPI/R/exportVersion.R | 69 - redcapAPI-2.0/redcapAPI/R/fieldToVar.R | 256 +--- redcapAPI-2.0/redcapAPI/R/importFiles.R | 135 +- redcapAPI-2.0/redcapAPI/R/importRecords.R | 480 ++++--- redcapAPI-2.0/redcapAPI/R/makeRedcapFactor.R |only redcapAPI-2.0/redcapAPI/R/massert.R |only redcapAPI-2.0/redcapAPI/R/parseBranchingLogic.R | 3 redcapAPI-2.0/redcapAPI/R/recodeCheck.R | 193 --- redcapAPI-2.0/redcapAPI/R/redcapConnection.R | 5 redcapAPI-2.0/redcapAPI/R/redcapFactorFlip.R | 4 redcapAPI-2.0/redcapAPI/R/redcap_error.R |only redcapAPI-2.0/redcapAPI/R/syncUnderscoreCodings.R | 100 + redcapAPI-2.0/redcapAPI/R/validateImport.R | 690 ++--------- redcapAPI-2.0/redcapAPI/R/validateImport_methods.R |only redcapAPI-2.0/redcapAPI/R/zzz.R | 32 redcapAPI-2.0/redcapAPI/README.md | 2 redcapAPI-2.0/redcapAPI/man/allocationTable.Rd | 72 - redcapAPI-2.0/redcapAPI/man/checkbox_suffixes.Rd |only redcapAPI-2.0/redcapAPI/man/deleteFiles.Rd | 39 redcapAPI-2.0/redcapAPI/man/deprecated_redcapProjectInfo.Rd |only redcapAPI-2.0/redcapAPI/man/exportArms.Rd | 96 - redcapAPI-2.0/redcapAPI/man/exportBundle.Rd |only redcapAPI-2.0/redcapAPI/man/exportEvents.Rd | 84 - redcapAPI-2.0/redcapAPI/man/exportFieldNames.Rd |only redcapAPI-2.0/redcapAPI/man/exportFiles.Rd | 98 - redcapAPI-2.0/redcapAPI/man/exportInstruments.Rd | 49 redcapAPI-2.0/redcapAPI/man/exportMappings.Rd | 77 - redcapAPI-2.0/redcapAPI/man/exportMetaData.Rd | 56 redcapAPI-2.0/redcapAPI/man/exportPdf.Rd |only redcapAPI-2.0/redcapAPI/man/exportProjectInformation.Rd |only redcapAPI-2.0/redcapAPI/man/exportRecords.Rd | 293 ++-- redcapAPI-2.0/redcapAPI/man/exportReports.Rd | 54 redcapAPI-2.0/redcapAPI/man/exportUsers.Rd | 117 - redcapAPI-2.0/redcapAPI/man/exportVersion.Rd | 34 redcapAPI-2.0/redcapAPI/man/fieldToVar.Rd | 34 redcapAPI-2.0/redcapAPI/man/importFiles.Rd | 47 redcapAPI-2.0/redcapAPI/man/importRecords.Rd | 66 - redcapAPI-2.0/redcapAPI/man/massert.Rd |only redcapAPI-2.0/redcapAPI/man/parseBranchingLogic.Rd | 15 redcapAPI-2.0/redcapAPI/man/recodeCheck.Rd | 177 -- redcapAPI-2.0/redcapAPI/man/redcapAPI.Rd | 57 redcapAPI-2.0/redcapAPI/man/redcapConnection.Rd | 60 redcapAPI-2.0/redcapAPI/man/redcapFactorFlip.Rd | 19 redcapAPI-2.0/redcapAPI/man/redcap_error.Rd |only redcapAPI-2.0/redcapAPI/man/syncUnderscoreCodings.Rd | 67 - redcapAPI-2.0/redcapAPI/man/validateImport.Rd | 96 - 75 files changed, 3258 insertions(+), 3329 deletions(-)
Title: Random Generation of Contingency Tables
Description: Contains functions for random generation of R x C and 2 x 2 x K contingency tables. In addition to the generation of contingency tables over predetermined intraclass-correlated clusters, it is possible to generate contingency tables without intraclass correlations under product multinomial, multinomial, and Poisson sampling plans. It also consists of a function for generation of random data from a given discrete probability distribution function. See Demirhan (2016) <https://journal.r-project.org/archive/2016-1/demirhan.pdf> for more information.
Author: Haydar Demirhan
Maintainer: Haydar Demirhan <haydar.demirhan@rmit.edu.au>
Diff between rTableICC versions 1.0.4 dated 2017-03-28 and 1.0.6 dated 2018-01-18
DESCRIPTION | 10 - MD5 | 5 inst |only man/rTableICC-package.Rd | 242 +++++++++++++++++++++++------------------------ 4 files changed, 130 insertions(+), 127 deletions(-)
Title: Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Description: Read and write 'las' and 'laz' binary file formats. The LAS file format is a public file format for the interchange of 3-dimensional point cloud data between data users. The LAS specifications are approved by the American Society for Photogrammetry and Remote Sensing <https://www.asprs.org/committee-general/laser-las-file-format-exchange-activities.html>. The LAZ file format is an open and lossless compression scheme for binary LAS format versions 1.0 to 1.3 <https://www.laszip.org/>.
Author: Jean-Romain Roussel [aut, cre, cph],
Martin Isenburg [cph] (Is the author of the LASlib and LASzip
libraries),
David Auty [ctb] (Reviewed the documentation),
Pierrick Marie [ctb] (Helped to compile LASlib code in R),
Florian De Boissieu [ctb] (Enable support of .lax file and extra byte
attributes)
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between rlas versions 1.1.8 dated 2018-01-16 and 1.1.9 dated 2018-01-18
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 8 +++++++- README.md | 2 +- inst/include/rlasstreamer.h | 5 ++--- src/rlasstreamer.cpp | 10 ++++------ tests/testthat/test-readlas.R | 6 ++++++ 7 files changed, 30 insertions(+), 21 deletions(-)
Title: Import and Export 'SPSS', 'Stata' and 'SAS' Files
Description: Import foreign statistical formats into R via the embedded
'ReadStat' C library, <https://github.com/WizardMac/ReadStat>.
Author: Hadley Wickham [aut, cre],
Evan Miller [aut, cph] (Author of included ReadStat code),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between haven versions 1.1.0 dated 2017-07-09 and 1.1.1 dated 2018-01-18
DESCRIPTION | 36 - MD5 | 139 +++-- NAMESPACE | 5 NEWS.md | 31 + R/RcppExports.R | 32 - R/as_factor.R | 4 R/haven.R | 30 - R/labelled_spss.R | 2 R/tagged_na.R | 3 R/update.R | 10 R/utils.R |only R/zzz.R | 4 build/vignette.rds |binary inst/doc/datetimes.html | 184 +++++++ inst/doc/semantics.Rmd | 2 inst/doc/semantics.html | 528 +++++++++++++++------- man/read_dta.Rd | 2 man/read_sas.Rd | 9 src/DfReader.cpp | 44 + src/DfWriter.cpp | 33 - src/RcppExports.cpp | 72 +-- src/haven_types.cpp |only src/haven_types.h | 126 ----- src/readstat/readstat.h | 20 src/readstat/readstat_convert.c | 27 - src/readstat/readstat_error.c | 3 src/readstat/readstat_io_unistd.c | 32 + src/readstat/readstat_io_unistd.h | 2 src/readstat/readstat_malloc.c |only src/readstat/readstat_malloc.h |only src/readstat/readstat_parser.c | 14 src/readstat/readstat_writer.c | 18 src/readstat/readstat_writer.h | 2 src/readstat/sas/ieee.c | 2 src/readstat/sas/readstat_sas.c | 62 +- src/readstat/sas/readstat_sas.h | 7 src/readstat/sas/readstat_sas7bcat_read.c | 76 ++- src/readstat/sas/readstat_sas7bdat_read.c | 283 +++++++---- src/readstat/sas/readstat_sas7bdat_write.c | 62 ++ src/readstat/sas/readstat_sas_rle.c | 184 +++---- src/readstat/sas/readstat_sas_rle.h | 8 src/readstat/sas/readstat_xport_read.c | 44 + src/readstat/sas/readstat_xport_write.c | 50 +- src/readstat/spss/readstat_por_parse.c | 20 src/readstat/spss/readstat_por_read.c | 186 +++++-- src/readstat/spss/readstat_por_write.c | 13 src/readstat/spss/readstat_sav.c | 5 src/readstat/spss/readstat_sav.h | 11 src/readstat/spss/readstat_sav_parse.c | 78 +-- src/readstat/spss/readstat_sav_parse_timestamp.c | 86 +-- src/readstat/spss/readstat_sav_parse_timestamp.h | 6 src/readstat/spss/readstat_sav_read.c | 363 ++++++++------- src/readstat/spss/readstat_sav_write.c | 83 +-- src/readstat/spss/readstat_spss.c | 117 ++-- src/readstat/spss/readstat_spss.h | 8 src/readstat/spss/readstat_spss_parse.c | 2 src/readstat/stata/readstat_dta.c | 86 ++- src/readstat/stata/readstat_dta.h | 9 src/readstat/stata/readstat_dta_parse_timestamp.c | 65 +- src/readstat/stata/readstat_dta_parse_timestamp.h | 3 src/readstat/stata/readstat_dta_read.c | 467 +++++++++++-------- src/readstat/stata/readstat_dta_write.c | 68 ++ tests/testthat/test-as-factor.R | 2 tests/testthat/test-labelled.R | 3 tests/testthat/test-labelled_spss.R | 5 tests/testthat/test-read-sas.R | 1 tests/testthat/test-read-xpt.R |only tests/testthat/test-utils.R |only tests/testthat/test-write-sas.R | 11 tests/testthat/test-write-sav.R | 22 tests/testthat/test-write-xpt.R | 1 tests/testthat/test-zap_labels.R | 4 tests/testthat/test-zap_widths.R |only vignettes/semantics.Rmd | 2 74 files changed, 2408 insertions(+), 1511 deletions(-)
Title: Fuzzy String Matching
Description: Fuzzy string matching implementation of the 'fuzzywuzzy' <https://github.com/seatgeek/fuzzywuzzy> 'python' package. It uses the Levenshtein Distance <https://en.wikipedia.org/wiki/Levenshtein_distance> to calculate the differences between sequences.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between fuzzywuzzyR versions 1.0.1 dated 2017-08-04 and 1.0.2 dated 2018-01-18
DESCRIPTION | 8 MD5 | 23 - NEWS.md | 6 R/fuzzy_w.R | 271 ++++++++++++- R/package.R | 4 build/vignette.rds |binary inst/doc/functionality_of_fuzzywuzzyR_package.html | 72 +-- man/FuzzExtract.Rd | 10 man/FuzzMatcher.Rd | 10 man/FuzzUtils.Rd | 8 man/check_scorer.Rd | 2 man/is_python2.Rd |only tests/testthat/test_package.R | 414 +++++++++++++++++++++ 13 files changed, 744 insertions(+), 84 deletions(-)
Title: R-Based API for Accessing the MSKCC Cancer Genomics Data Server
(CGDS)
Description: Provides a basic set of R functions for querying the Cancer
Genomics Data Server (CGDS), hosted by the Computational Biology Center at
Memorial-Sloan-Kettering Cancer Center (MSKCC) at <www.cbioportal.org>.
Author: Anders Jacobsen <jacobsen@cbio.mskcc.org>, cBioPortal Questions <cbioportal@googlegroups.com>
Maintainer: Augustin Luna <lunaa@cbio.mskcc.org>
Diff between cgdsr versions 1.2.8 dated 2017-12-06 and 1.2.10 dated 2018-01-18
DESCRIPTION | 14 +++++----- MD5 | 6 ++-- R/cgdsr.R | 72 +++++++++++++++++++++++++++-------------------------- inst/doc/cgdsr.pdf |binary 4 files changed, 48 insertions(+), 44 deletions(-)
Title: Map Layers and Spatial Utilities for British Columbia
Description: Provides access to various spatial layers for B.C., such as
administrative boundaries, natural resource management boundaries, etc.
All layers are imported from the 'bcmaps.rdata' package as 'sf' or 'Spatial' objects
through function calls in this package. All layers are in B.C. 'Albers' equal-area projection
<http://spatialreference.org/ref/epsg/nad83-bc-albers/>, which is the B.C.
government standard.
Author: Andy Teucher [aut, cre],
Stephanie Hazlitt [aut],
Sam Albers [aut],
Province of British Columbia [cph]
Maintainer: Andy Teucher <andy.teucher@gov.bc.ca>
Diff between bcmaps versions 0.16.0 dated 2017-12-20 and 0.17.0 dated 2018-01-18
DESCRIPTION | 16 ++- MD5 | 46 +++++------ NAMESPACE | 3 NEWS.md | 9 ++ R/bcmaps.R | 3 R/download_data.R | 47 ++++++++++- R/get_data.R | 56 ++++++++++--- R/make_shortcuts.R | 17 +++- R/shortcuts.R | 61 ++++++++++++++ R/utils.R | 20 +--- README.md | 144 ++++++++++++++++++++++------------- inst/doc/add_points.html | 26 +++--- man/available_layers.Rd | 11 +- man/bc_cities.Rd |only man/bcmaps.Rd | 3 man/fix_geo_problems.Rd | 2 man/get_layer.Rd | 5 - man/get_poly_attribute.Rd | 2 man/municipalities.Rd | 3 man/regional_districts.Rd | 3 man/tsa.Rd |only tests/testthat/test-data_functions.R | 18 +--- tests/testthat/test-get_big_data.R | 11 ++ tools/readme/unnamed-chunk-6-1.png |binary tools/readme/unnamed-chunk-7-1.png |binary 25 files changed, 358 insertions(+), 148 deletions(-)
Title: Domain-Specific Language for Building PLS Structural Equation
Models
Description: A powerful, easy to write and easy to modify syntax for
specifying and estimating Partial Least Squares (PLS) path models allowing for the latest estimation methods
for Consistent PLS as per Dijkstra & Henseler (2015, MISQ 39(2): 297-316), adjusted interactions as per
Henseler & Chin (2010) <doi:10.1080/10705510903439003> and bootstrapping utilizing
parallel processing as per Hair et al. (2017, ISBN:978-1483377445).
Author: Soumya Ray [aut, ths],
Nicholas Danks [aut, cre],
Juan Manuel Velasquez Estrada [aut]
Maintainer: Nicholas Danks <nicholasdanks@hotmail.com>
Diff between seminr versions 0.3.1 dated 2018-01-05 and 0.4.0 dated 2018-01-18
seminr-0.3.1/seminr/tests/fixtures/factorial_factorscores.csv |only seminr-0.3.1/seminr/tests/fixtures/factorscores.csv |only seminr-0.3.1/seminr/tests/fixtures/factorscores2.csv |only seminr-0.3.1/seminr/tests/fixtures/inner_weights_factorscores.csv |only seminr-0.4.0/seminr/DESCRIPTION | 14 + seminr-0.4.0/seminr/MD5 | 80 +++++----- seminr-0.4.0/seminr/R/bootstrap.R | 6 seminr-0.4.0/seminr/R/consistent.R | 14 - seminr-0.4.0/seminr/R/constructs.R | 10 - seminr-0.4.0/seminr/R/evaluation.R | 20 +- seminr-0.4.0/seminr/R/interactions.R | 42 ++--- seminr-0.4.0/seminr/R/library.R | 52 +++--- seminr-0.4.0/seminr/R/model.R | 2 seminr-0.4.0/seminr/R/reliability.R | 2 seminr-0.4.0/seminr/R/reporting.R | 22 +- seminr-0.4.0/seminr/R/simplePLS.R | 38 ++-- seminr-0.4.0/seminr/R/summary.R | 5 seminr-0.4.0/seminr/README.md | 2 seminr-0.4.0/seminr/build/vignette.rds |binary seminr-0.4.0/seminr/demo/seminr-interaction.R | 8 - seminr-0.4.0/seminr/inst/doc/SEMinR.R | 2 seminr-0.4.0/seminr/inst/doc/SEMinR.Rmd | 16 +- seminr-0.4.0/seminr/inst/doc/SEMinR.html | 31 ++- seminr-0.4.0/seminr/man/PLSc.Rd | 4 seminr-0.4.0/seminr/man/bootstrap_model.Rd | 6 seminr-0.4.0/seminr/man/constructs.Rd | 6 seminr-0.4.0/seminr/man/interaction_ortho.Rd | 10 - seminr-0.4.0/seminr/man/interaction_scaled.Rd | 10 - seminr-0.4.0/seminr/man/interactions.Rd | 6 seminr-0.4.0/seminr/man/mode_A.Rd | 4 seminr-0.4.0/seminr/man/mode_B.Rd | 4 seminr-0.4.0/seminr/man/path_factorial.Rd | 4 seminr-0.4.0/seminr/man/path_weighting.Rd | 4 seminr-0.4.0/seminr/man/reflective.Rd | 4 seminr-0.4.0/seminr/man/report_paths.Rd | 16 +- seminr-0.4.0/seminr/tests/fixtures/constructscores.csv |only seminr-0.4.0/seminr/tests/fixtures/constructscores2.csv |only seminr-0.4.0/seminr/tests/fixtures/factorial_scores.csv |only seminr-0.4.0/seminr/tests/fixtures/inner_weights_constructscores.csv |only seminr-0.4.0/seminr/tests/testthat/test-bootstrap.R | 10 - seminr-0.4.0/seminr/tests/testthat/test-consistent.R | 14 - seminr-0.4.0/seminr/tests/testthat/test-inner_weighting.R | 28 +-- seminr-0.4.0/seminr/tests/testthat/test-metric.R | 4 seminr-0.4.0/seminr/tests/testthat/test-output.r | 32 ++-- seminr-0.4.0/seminr/vignettes/SEMinR.Rmd | 16 +- 45 files changed, 284 insertions(+), 264 deletions(-)
Title: Chemical Composition of Differential Protein Expression
Description: Datasets are collected here for differentially (up- and down-)
expressed proteins identified in proteomic studies of cancer and in cell
culture experiments. Tables of amino acid compositions of proteins are
used for calculations of chemical composition, projected into selected
basis species. Plotting functions are used to visualize the compositional
differences and thermodynamic potentials for proteomic transformations.
Author: Jeffrey Dick
Maintainer: Jeffrey Dick <j3ffdick@gmail.com>
Diff between canprot versions 0.1.0 dated 2017-06-13 and 0.1.1 dated 2018-01-18
canprot-0.1.0/canprot/R/CNS.R |only canprot-0.1.0/canprot/R/ZC_nH2O.R |only canprot-0.1.0/canprot/man/ZC_nH2O.Rd |only canprot-0.1.1/canprot/DESCRIPTION | 12 +- canprot-0.1.1/canprot/MD5 | 73 ++++++++--------- canprot-0.1.1/canprot/NAMESPACE | 12 +- canprot-0.1.1/canprot/R/diffplot.R | 27 +++--- canprot-0.1.1/canprot/R/get_colors.R | 8 + canprot-0.1.1/canprot/R/get_comptab.R |only canprot-0.1.1/canprot/R/internal.R | 16 +++ canprot-0.1.1/canprot/R/pdat_CRC.R | 23 ++--- canprot-0.1.1/canprot/R/pdat_pancreatic.R | 21 ++-- canprot-0.1.1/canprot/R/xsummary.R | 29 +++--- canprot-0.1.1/canprot/build/partial.rdb |binary canprot-0.1.1/canprot/inst/NEWS | 20 ++++ canprot-0.1.1/canprot/inst/doc/basis_comparison.html | 4 canprot-0.1.1/canprot/inst/doc/colorectal.R | 2 canprot-0.1.1/canprot/inst/doc/colorectal.Rmd | 4 canprot-0.1.1/canprot/inst/doc/colorectal.html | 16 +-- canprot-0.1.1/canprot/inst/doc/hyperosmotic.R | 2 canprot-0.1.1/canprot/inst/doc/hyperosmotic.Rmd | 2 canprot-0.1.1/canprot/inst/doc/hyperosmotic.html | 12 +- canprot-0.1.1/canprot/inst/doc/hypoxia.R | 2 canprot-0.1.1/canprot/inst/doc/hypoxia.Rmd | 2 canprot-0.1.1/canprot/inst/doc/hypoxia.html | 12 +- canprot-0.1.1/canprot/inst/doc/pancreatic.R | 2 canprot-0.1.1/canprot/inst/doc/pancreatic.Rmd | 2 canprot-0.1.1/canprot/inst/doc/pancreatic.html | 12 +- canprot-0.1.1/canprot/inst/doc/potential_diagrams.html | 6 - canprot-0.1.1/canprot/inst/extdata/colors |only canprot-0.1.1/canprot/man/diffplot.Rd | 14 +-- canprot-0.1.1/canprot/man/get_colors.Rd | 2 canprot-0.1.1/canprot/man/get_comptab.Rd |only canprot-0.1.1/canprot/man/get_pdat.Rd | 4 canprot-0.1.1/canprot/man/pdat_.Rd | 7 - canprot-0.1.1/canprot/man/xsummary.Rd | 9 +- canprot-0.1.1/canprot/vignettes/colorectal.Rmd | 4 canprot-0.1.1/canprot/vignettes/hyperosmotic.Rmd | 2 canprot-0.1.1/canprot/vignettes/hypoxia.Rmd | 2 canprot-0.1.1/canprot/vignettes/pancreatic.Rmd | 2 40 files changed, 206 insertions(+), 161 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-16 1.0.9
2017-10-10 1.0.8
2017-07-22 1.0.7
2017-06-05 1.0.6
2017-05-03 1.0.5