Fri, 19 Jan 2018

Package randomizr updated to version 0.8.0 with previous version 0.6.0 dated 2017-05-03

Title: Easy-to-Use Tools for Common Forms of Random Assignment and Sampling
Description: Generates random assignments for common experimental designs and random samples for common sampling designs.
Author: Alexander Coppock [aut, cre], Jasper Cooper [ctb], Neal Fultz [ctb] (C version of restricted partitions)
Maintainer: Alexander Coppock <acoppock@gmail.com>

Diff between randomizr versions 0.6.0 dated 2017-05-03 and 0.8.0 dated 2018-01-19

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More information about randomizr at CRAN
Permanent link

Package LoopAnalyst updated to version 1.2-6 with previous version 1.2-4 dated 2015-07-08

Title: A Collection of Tools to Conduct Levins' Loop Analysis
Description: Loop analysis makes qualitative predictions of variable change in a system of causally interdependent variables, where "qualitative" means sign only (i.e. increases, decreases, non change, and ambiguous). This implementation includes output support for graphs in .dot file format for use with visualization software such as 'graphviz' (<http://graphviz.org>). 'LoopAnalyst' provides tools for the construction and output of community matrices, computation and output of community effect matrices, tables of correlations, adjoint, absolute feedback, weighted feedback and weighted prediction matrices, change in life expectancy matrices, and feedback, path and loop enumeration tools.
Author: Alexis Dinno <alexis.dinno@pdx.edu>
Maintainer: Alexis Dinno <alexis.dinno@pdx.edu>

Diff between LoopAnalyst versions 1.2-4 dated 2015-07-08 and 1.2-6 dated 2018-01-19

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More information about LoopAnalyst at CRAN
Permanent link

Package rsMove updated to version 0.2.3 with previous version 0.2.1 dated 2017-08-19

Title: Remote Sensing for Movement Ecology
Description: Tools that support the combined use of animal movement and remote sensing data.
Author: Ruben Remelgado [aut, cre]
Maintainer: Ruben Remelgado <ruben.remelgado@uni-wuerzburg.de>

Diff between rsMove versions 0.2.1 dated 2017-08-19 and 0.2.3 dated 2018-01-19

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More information about rsMove at CRAN
Permanent link

Package rosetteApi updated to version 1.9.0 with previous version 1.8.0 dated 2017-10-24

Title: 'Rosette' API
Description: 'Rosette' is an API for multilingual text analysis and information extraction. More information can be found at <https://developer.rosette.com>.
Author: Chris Park [aut, cre], Sam Hausmann [aut], Hannah Gaudet [ctb], Seth Gransky [ctb], Basis Technology Corp. [cph]
Maintainer: Chris Park <cpark@basistech.com>

Diff between rosetteApi versions 1.8.0 dated 2017-10-24 and 1.9.0 dated 2018-01-19

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More information about rosetteApi at CRAN
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Package RNAseqNet updated to version 0.1.2 with previous version 0.1.1 dated 2017-05-16

Title: Log-Linear Poisson Graphical Model with Hot-Deck Multiple Imputation
Description: Infer log-linear Poisson Graphical Model with an auxiliary data set. Hot-deck multiple imputation method is used to improve the reliability of the inference with an auxiliary dataset. Standard log-linear Poisson graphical model can also be used for the inference and the Stability Approach for Regularization Selection (StARS) is implemented to drive the selection of the regularization parameter. The method is fully described in <doi:10.1093/bioinformatics/btx819>.
Author: Alyssa Imbert [aut], Nathalie Villa-Vialaneix [aut, cre]
Maintainer: Nathalie Villa-Vialaneix <nathalie.villa-vialaneix@inra.fr>

Diff between RNAseqNet versions 0.1.1 dated 2017-05-16 and 0.1.2 dated 2018-01-19

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New package pivotaltrackR with initial version 0.1.0
Package: pivotaltrackR
Type: Package
Title: A Client for the 'Pivotal Tracker' API
Description: 'Pivotal Tracker' <https://www.pivotaltracker.com> is a project management software-as-a-service that provides a REST API. This package provides an R interface to that API, allowing you to query it and work with its responses.
Version: 0.1.0
Authors@R: person("Neal", "Richardson", role=c("aut", "cre"), email="neal.p.richardson@gmail.com")
URL: http://enpiar.com/r/pivotaltrackR, https://github.com/nealrichardson/pivotaltrackR
BugReports: https://github.com/nealrichardson/pivotaltrackR/issues
License: MIT + file LICENSE
Depends: R (>= 3.0.0)
Imports: curl, httr, utils
Suggests: covr, httptest (>= 3.0.0), knitr, magrittr, spelling
Language: en-US
RoxygenNote: 6.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-01-19 17:53:11 UTC; neal.richardson
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal.p.richardson@gmail.com>
Repository: CRAN
Date/Publication: 2018-01-19 19:03:38 UTC

More information about pivotaltrackR at CRAN
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Package usethis updated to version 1.2.0 with previous version 1.1.0 dated 2017-11-17

Title: Automate Package and Project Setup
Description: Automate package and project setup tasks that are otherwise performed manually. This includes setting up unit testing, test coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio' projects, and more.
Author: Hadley Wickham [aut, cre] (0000-0003-4757-117X), Jennifer Bryan [aut] (0000-0002-6983-2759), RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package TreeBUGS updated to version 1.2.0 with previous version 1.1.1 dated 2017-08-23

Title: Hierarchical Multinomial Processing Tree Modeling
Description: User-friendly analysis of hierarchical multinomial processing tree (MPT) models that are often used in cognitive psychology. Implements the latent-trait MPT approach (Klauer, 2010) <DOI:10.1007/s11336-009-9141-0> and the beta-MPT approach (Smith & Batchelder, 2010) <DOI:10.1016/j.jmp.2009.06.007> to model heterogeneity of participants. MPT models are conveniently specified by an .eqn-file as used by other MPT software and data are provided by a .csv-file or directly in R. Models are either fitted by calling JAGS or by an MPT-tailored Gibbs sampler in C++ (only for nonhierarchical and beta MPT models). Provides tests of heterogeneity and MPT-tailored summaries and plotting functions.
Author: Daniel W. Heck [aut, cre], Nina R. Arnold [aut, dtc], Denis Arnold [aut], Alexander Ly [ctb]
Maintainer: Daniel W. Heck <heck@uni-mannheim.de>

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Package RSEIS updated to version 3.7-8 with previous version 3.7-4 dated 2017-03-12

Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees [aut, cre], Jake Anderson [ctb], Leonard Lisapaly [ctb], Dave Harris [aut, cph]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>

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Package rrpack updated to version 0.1-7 with previous version 0.1-6 dated 2017-11-09

Title: Reduced-Rank Regression
Description: Multivariate regression methodologies including reduced-rank regression (RRR), reduced-rank ridge regression (RRS), robust reduced-rank regression (R4), generalized/mixed-response reduced-rank regression (mRRR), row-sparse reduced-rank regression (SRRR), reduced-rank regression with a sparse singular value decomposition (RSSVD), and sparse and orthogonal factor regression (SOFAR).
Author: Kun Chen [aut, cre], Wenjie Wang [ctb], Jun Yan [ctb]
Maintainer: Kun Chen <kun.chen@uconn.edu>

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Package REddyProc updated to version 1.1.3 with previous version 1.1.2 dated 2018-01-18

Title: Post Processing of (Half-)Hourly Eddy-Covariance Measurements
Description: Standard and extensible Eddy-Covariance data post-processing includes uStar-filtering, gap-filling, and flux-partitioning. The Eddy-Covariance (EC) micrometeorological technique quantifies continuous exchange fluxes of gases, energy, and momentum between an ecosystem and the atmosphere. It is important for understanding ecosystem dynamics and upscaling exchange fluxes. (Aubinet et al. (2012) <doi:10.1007/978-94-007-2351-1>). This package inputs pre-processed (half-)hourly data and supports further processing. First, a quality-check and filtering is performed based on the relationship between measured flux and friction velocity (uStar) to discard biased data (Papale et al. (2006) <doi:10.5194/bg-3-571-2006>). Second, gaps in the data are filled based on information from environmental conditions (Reichstein et al. (2005) <doi:10.1111/j.1365-2486.2005.001002.x>). Third, the net flux of carbon dioxide is partitioned into its gross fluxes in and out of the ecosystem by night-time based and day-time based approaches (Lasslop et al. (2010) <doi:10.1111/j.1365-2486.2009.02041.x>).
Author: Department for Biogeochemical Integration at MPI-BGC, Jena, Germany [cph], Thomas Wutzler [aut, cre], Markus Reichstein [aut], Antje Maria Moffat [aut, trl], Olaf Menzer [ctb], Mirco Migliavacca [aut], Kerstin Sickel [ctb, trl], Ladislav Šigut [ctb]
Maintainer: Thomas Wutzler <twutz@bgc-jena.mpg.de>

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Package lbreg updated to version 1.2 with previous version 1.1 dated 2017-06-28

Title: Log-Binomial Regression with Constrained Optimization
Description: Maximum likelihood estimation of log-binomial regression with special functionality when the MLE is on the boundary of the parameter space.
Author: Bernardo B. Andrade
Maintainer: Bernardo Andrade <bbandrade@unb.br>

Diff between lbreg versions 1.1 dated 2017-06-28 and 1.2 dated 2018-01-19

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Package jdx updated to version 0.1.2 with previous version 0.1.1 dated 2018-01-18

Title: 'Java' Data Exchange for 'R' and 'rJava'
Description: Simplifies and extends data exchange between 'R' and 'Java'.
Author: Floid R. Gilbert [aut, cre], David B. Dahl [aut]
Maintainer: Floid R. Gilbert <floid.r.gilbert@gmail.com>

Diff between jdx versions 0.1.1 dated 2018-01-18 and 0.1.2 dated 2018-01-19

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New package icr with initial version 0.5.1
Package: icr
Type: Package
Date: 2018-01-18
Title: Compute Krippendorff's Alpha
Version: 0.5.1
Author: Alexander Staudt [aut, cre], Pierre L'Ecuyer [ctb, cph] (author of the C++ RNG code)
Maintainer: Alexander Staudt <staudtlex@live.de>
Description: Provides functions to compute and plot Krippendorff's inter-coder reliability coefficient alpha and bootstrapped uncertainty estimates (Krippendorff 2004, ISBN:0761915443).
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Imports: Rcpp (>= 0.12.9), ggplot2, reshape2
LinkingTo: Rcpp
RoxygenNote: 6.0.1
NeedsCompilation: yes
Packaged: 2018-01-19 15:07:48 UTC; astaudt
Repository: CRAN
Date/Publication: 2018-01-19 18:38:07 UTC

More information about icr at CRAN
Permanent link

Package HDPenReg updated to version 0.93.2 with previous version 0.93.1 dated 2016-01-26

Title: High-Dimensional Penalized Regression
Description: Algorithms for lasso and fused-lasso problems: implementation of the lars algorithm for lasso and fusion penalization and EM-based algorithms for (logistic) lasso and fused-lasso penalization.
Author: Quentin Grimonprez [aut, cre], Serge Iovleff [aut]
Maintainer: Quentin Grimonprez <quentin.grimonprez@inria.fr>

Diff between HDPenReg versions 0.93.1 dated 2016-01-26 and 0.93.2 dated 2018-01-19

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Package FHDI updated to version 1.2 with previous version 1.1 dated 2018-01-18

Title: Fractional Hot Deck and Fully Efficient Fractional Imputation
Description: Impute general multivariate missing data with the fractional hot deck imputation based on Jaekwang Kim (2011) <doi:10.1093/biomet/asq073>.
Author: Jongho Im [aut], Inho Cho [aut, cre], Jaekwang Kim [aut]
Maintainer: Inho Cho <icho@iastate.edu>

Diff between FHDI versions 1.1 dated 2018-01-18 and 1.2 dated 2018-01-19

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Package abjutils updated to version 0.2.1 with previous version 0.0.1 dated 2017-01-04

Title: Useful Tools for Jurimetrical Analysis Used by the Brazilian Jurimetrics Association
Description: The Brazilian Jurimetrics Association (ABJ in Portuguese, see <http://www.abjur.org.br/en/> for more information) is a non-profit organization which aims to investigate and promote the use of statistics and probability in the study of Law and its institutions. This package implements general purpose tools used by ABJ, such as functions for sampling and basic manipulation of Brazilian lawsuits identification number. It also implements functions for text cleaning, such as accentuation removal.
Author: Julio Trecenti [aut], Athos Damiani [ctb], Fernando Correa [aut], Caio Lente [aut, cre], Brazilian Jurimetrics Association [cph]
Maintainer: Caio Lente <ctlente@gmail.com>

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Package face updated to version 0.1-4 with previous version 0.1-3 dated 2017-04-25

Title: Fast Covariance Estimation for Sparse Functional Data
Description: Implementation of the Fast Covariance Estimation for Sparse Functional Data paper published in Statistics and Computing, Xiao et al. (2018) <doi:10.1007/s11222-017-9744-8>.
Author: Luo Xiao [aut,cre], Cai Li [aut], William Checkley [aut], Ciprian Crainiceanu [aut]
Maintainer: Luo Xiao <lxiao5@ncsu.edu>

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Package AnglerCreelSurveySimulation updated to version 1.0.0 with previous version 0.2.1 dated 2015-01-04

Title: Simulate a Bus Route Creel Survey of Anglers
Description: Simulate an angler population, sample the simulated population with a user-specified survey times, and calculate metrics from a bus route-type creel survey.
Author: Steven H. Ranney
Maintainer: Steven H. Ranney <steven.ranney@gmail.com>

Diff between AnglerCreelSurveySimulation versions 0.2.1 dated 2015-01-04 and 1.0.0 dated 2018-01-19

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Package RcppCWB (with last version 0.1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-01-14 0.1.3

Permanent link
Package wrassp updated to version 0.1.6 with previous version 0.1.4 dated 2016-05-30

Title: Interface to the 'ASSP' Library
Description: A wrapper around Michel Scheffers's 'libassp' (<http://libassp.sourceforge.net/>). The 'libassp' (Advanced Speech Signal Processor) library aims at providing functionality for handling speech signal files in most common audio formats and for performing analyses common in phonetic science/speech science. This includes the calculation of formants, fundamental frequency, root mean square, auto correlation, a variety of spectral analyses, zero crossing rate, filtering etc. This wrapper provides R with a large subset of 'libassp's signal processing functions and provides them to the user in a (hopefully) user-friendly manner.
Author: Raphael Winkelmann [aut, cre], Lasse Bombien [aut], Michel Scheffers [aut]
Maintainer: Raphael Winkelmann <raphael@phonetik.uni-muenchen.de>

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Package spcosa updated to version 0.3-7 with previous version 0.3-6 dated 2015-12-22

Title: Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata
Description: Spatial coverage sampling and random sampling from compact geographical strata created by k-means.
Author: Dennis Walvoort [aut, cre, cph], Dick Brus [aut, cph], Jaap de Gruijter [aut, cph]
Maintainer: Dennis Walvoort <dennis.Walvoort@wur.nl>

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Package sp updated to version 1.2-7 with previous version 1.2-6 dated 2018-01-05

Title: Classes and Methods for Spatial Data
Description: Classes and methods for spatial data; the classes document where the spatial location information resides, for 2D or 3D data. Utility functions are provided, e.g. for plotting data as maps, spatial selection, as well as methods for retrieving coordinates, for subsetting, print, summary, etc.
Author: Edzer Pebesma [aut, cre], Roger Bivand [aut], Barry Rowlingson [ctb], Virgilio Gomez-Rubio [ctb], Robert Hijmans [ctb], Michael Sumner [ctb], Don MacQueen [ctb], Jim Lemon [ctb], Josh O'Brien [ctb], Joseph O'Rourke [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

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Package longRPart2 updated to version 0.2.3 with previous version 0.0.1 dated 2017-10-04

Title: Recursive Partitioning of Longitudinal Data
Description: Performs recursive partitioning of linear and nonlinear mixed effects models, specifically for longitudinal data. The package is an extension of the original 'longRPart' package by Stewart and Abdolell (2013) <https://cran.r-project.org/package=longRPart>.
Author: Ross Jacobucci [aut,cre], Sam Stewart[aut], Mohamed Abdolell [aut], Sarfaraz Serang [ctb], Gabriela Stegmann [ctb]
Maintainer: Ross Jacobucci <rcjacobuc@gmail.com>

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Package glamlasso updated to version 3.0 with previous version 2.0.1 dated 2016-08-19

Title: Penalization in Large Scale Generalized Linear Array Models
Description: Functions capable of performing efficient design matrix free penalized estimation in large scale 2 and 3-dimensional generalized linear array model framework. The generic glamlasso() function solves the penalized maximum likelihood estimation (PMLE) problem in a pure generalized linear array model (GLAM) as well as in a GLAM containing a non-tensor component. Currently Lasso or Smoothly Clipped Absolute Deviation (SCAD) penalized estimation is possible for the followings models: The Gaussian model with identity link, the Binomial model with logit link, the Poisson model with log link and the Gamma model with log link. Furthermore this package also contains two functions that can be used to fit special cases of GLAMs, see glamlassoRR() and glamlassoS(). The procedure underlying these functions is based on the gdpg algorithm from Lund et al. (2017) <doi:10.1080/10618600.2017.1279548>.
Author: Adam Lund
Maintainer: Adam Lund <adam.lund@math.ku.dk>

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Package dynatopmodel updated to version 1.2.1 with previous version 1.1 dated 2016-01-06

Title: Implementation of the Dynamic TOPMODEL Hydrological Model
Description: A native R implementation and enhancement of the Dynamic TOPMODEL semi-distributed hydrological model. Includes some preprocessing, utility and routines for displaying outputs.
Author: Peter Metcalfe, Keith Beven and Jim Freer
Maintainer: Peter Metcalfe <p.metcalfe@lancaster.ac.uk>

Diff between dynatopmodel versions 1.1 dated 2016-01-06 and 1.2.1 dated 2018-01-19

 dynatopmodel-1.1/dynatopmodel/man/disp.par.Rd              |only
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Package dnet updated to version 1.1.2 with previous version 1.1.1 dated 2017-07-09

Title: Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
Description: The focus of the dnet is to make sense of omics data (such as gene expression and mutations) from different angles including: integration with molecular networks, enrichments using ontologies, and relevance to gene evolutionary ages. Integration is achieved to identify a gene subnetwork from the whole gene network whose nodes/genes are labelled with informative data (such as the significant levels of differential expression or survival risks). To help make sense of identified gene networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific gene age information in major organisms including: human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. Add-on functionalities are supports for calculating semantic similarity between ontology terms (and between genes) and for calculating network affinity based on random walk; both can be done via high-performance parallel computing.
Author: Hai Fang and Julian Gough
Maintainer: Hai Fang <hfang@well.ox.ac.uk>

Diff between dnet versions 1.1.1 dated 2017-07-09 and 1.1.2 dated 2018-01-19

 DESCRIPTION               |   10 +++++-----
 MD5                       |   18 +++++++++---------
 R/dDAGinduce.r            |   25 ++++++++++++++++---------
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 10 files changed, 67 insertions(+), 29 deletions(-)

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Package descr updated to version 1.1.4 with previous version 1.1.3 dated 2016-05-11

Title: Descriptive Statistics
Description: Weighted frequency and contingency tables of categorical variables and of the comparison of the mean value of a numerical variable by the levels of a factor, and methods to produce xtable objects of the tables and to plot them. There are also functions to facilitate the character encoding conversion of objects, to quickly convert fixed width files into csv ones, and to export a data.frame to a text file with the necessary R and SPSS codes to reread the data.
Author: Jakson Aquino. Includes R source code and/or documentation written by Dirk Enzmann, Marc Schwartz, Nitin Jain, and Stefan Kraft
Maintainer: Jakson Aquino <jalvesaq@gmail.com>

Diff between descr versions 1.1.3 dated 2016-05-11 and 1.1.4 dated 2018-01-19

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 22 files changed, 155 insertions(+), 305 deletions(-)

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Package bayesTFR updated to version 6.1-2 with previous version 6.1-1 dated 2017-08-09

Title: Bayesian Fertility Projection
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova (hanas@uw.edu), Leontine Alkema (alkema@nus.edu.sg), Adrian Raftery (raftery@uw.edu), Bailey Fosdick (bfosdick@uw.edu), Patrick Gerland (gerland@un.org)
Maintainer: Hana Sevcikova <hanas@uw.edu>

Diff between bayesTFR versions 6.1-1 dated 2017-08-09 and 6.1-2 dated 2018-01-19

 ChangeLog               |    7 +++++++
 DESCRIPTION             |    8 ++++----
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 6 files changed, 21 insertions(+), 14 deletions(-)

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Package adabag updated to version 4.2 with previous version 4.1 dated 2015-10-14

Title: Applies Multiclass AdaBoost.M1, SAMME and Bagging
Description: It implements Freund and Schapire's Adaboost.M1 algorithm and Breiman's Bagging algorithm using classification trees as individual classifiers. Once these classifiers have been trained, they can be used to predict on new data. Also, cross validation estimation of the error can be done. Since version 2.0 the function margins() is available to calculate the margins for these classifiers. Also a higher flexibility is achieved giving access to the rpart.control() argument of 'rpart'. Four important new features were introduced on version 3.0, AdaBoost-SAMME (Zhu et al., 2009) is implemented and a new function errorevol() shows the error of the ensembles as a function of the number of iterations. In addition, the ensembles can be pruned using the option 'newmfinal' in the predict.bagging() and predict.boosting() functions and the posterior probability of each class for observations can be obtained. Version 3.1 modifies the relative importance measure to take into account the gain of the Gini index given by a variable in each tree and the weights of these trees. Version 4.0 includes the margin-based ordered aggregation for Bagging pruning (Guo and Boukir, 2013) and a function to auto prune the 'rpart' tree. Moreover, three new plots are also available importanceplot(), plot.errorevol() and plot.margins(). Version 4.1 allows to predict on unlabeled data. Version 4.2 includes the parallel computation option for some of the functions.
Author: Alfaro, Esteban; Gamez, Matias and Garcia, Noelia; with contributions from Li Guo
Maintainer: Esteban Alfaro <Esteban.Alfaro@uclm.es>

Diff between adabag versions 4.1 dated 2015-10-14 and 4.2 dated 2018-01-19

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 NAMESPACE                           |   11 +
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Package mvabund updated to version 3.13.1 with previous version 3.12.3 dated 2017-04-27

Title: Statistical Methods for Analysing Multivariate Abundance Data
Description: A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See 'mvabund-package.Rd' for details of overall package organization. The package is implemented with the Gnu Scientific Library (<http://www.gnu.org/software/gsl/>) and 'Rcpp' (<http://dirk.eddelbuettel.com/code/rcpp.html>) 'R' / 'C++' classes.
Author: Yi Wang [aut], Ulrike Naumann [aut], Dirk Eddelbuettel [aut], David Warton [aut, cre], Julian Byrnes [ctb], Ralph dos Santos Silva [ctb, cph], Jenni Niku [ctb], Ian Renner [ctb], Stephen Wright [ctb]
Maintainer: David Warton <David.Warton@unsw.edu.au>

Diff between mvabund versions 3.12.3 dated 2017-04-27 and 3.13.1 dated 2018-01-19

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 27 files changed, 847 insertions(+), 767 deletions(-)

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New package LN0SCIs with initial version 0.1.5
Package: LN0SCIs
Type: Package
Title: Simultaneous CIs for Ratios of Means of Log-Normal Populations with Zeros
Version: 0.1.5
Author: Jing Xu, Xinmin Li, Hua Liang
Maintainer: Jing Xu <274762204@qq.com>
Description: Construct the simultaneous confidence intervals for ratios of means of Log-normal populations with zeros. It also has a Python module that do the same thing, and can be applied to multiple comparisons of parameters of any k mixture distributions. And we provide four methods, the method based on generalized pivotal quantity with order statistics and the quantity based on Wilson by Li et al. (2009) <doi:10.1016/j.spl.2009.03.004> (GPQW), and the methods based on generalized pivotal quantity with order statistics and the quantity based on Hannig (2009) <doi:10.1093/biomet/asp050> (GPQH). The other two methods are based on two-step MOVER intervals by Amany H, Abdel K (2015) <doi:10.1080/03610918.2013.767911>. We deduce Fiducial generalized pivotal two-step MOVER intervals based on Wilson quantity (FMW) and based on Hannig's quantity (FMWH). All these approach you can find in the paper of us which it has been submitted.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-01-18 18:07:26 UTC; Administrator
Repository: CRAN
Date/Publication: 2018-01-19 12:11:37 UTC

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New package fs with initial version 1.0.0
Package: fs
Title: Cross-Platform File System Operations Based on 'libuv'
Version: 1.0.0
Authors@R: c( person("Jim", "Hester", email = "james.f.hester@gmail.com", role = c("aut", "cre")), person("Hadley", "Wickham", , "hadley@rstudio.com", "aut"), person("libuv project contributors", role = "cph", comment = "libuv library"), person("Joyent, Inc. and other Node contributors", role = "cph", comment = "libuv library"), person("RStudio", role = c("cph", "fnd")) )
Description: A cross-platform interface to file system operations, built on top of the 'libuv' C library.
Depends: R (>= 3.1)
License: GPL-3
Encoding: UTF-8
LazyData: true
ByteCompile: true
LinkingTo: Rcpp
Imports: Rcpp
SystemRequirements: GNU make
RoxygenNote: 6.0.1
URL: http://fs.r-lib.org
BugReports: https://github.com/r-lib/fs/issues
Copyright: file COPYRIGHTS
Suggests: testthat, covr, pillar (>= 1.0.0), crayon, withr
NeedsCompilation: yes
Packaged: 2018-01-18 21:48:31 UTC; jhester
Author: Jim Hester [aut, cre], Hadley Wickham [aut], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), RStudio [cph, fnd]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Repository: CRAN
Date/Publication: 2018-01-19 12:56:09 UTC

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New package crossword.r with initial version 0.3.5
Package: crossword.r
Date: 2018-01-13
Type: Package
Title: Generating Crosswords from Word Lists
Version: 0.3.5
Author: Peter Meissner
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Description: Generate crosswords from a list of words.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: R6 (>= 2.2.0), dplyr (>= 0.5.0), stringr (>= 1.2.0), magrittr (>= 1.5), jsonlite (>= 1.5), r6extended (>= 0.1.1)
RoxygenNote: 6.0.1
Collate: 'cw_matrix_to_df.R' 'Crossword.R' 'cw_greplv.R' 'cw_normalize_words.R' 'cw_to_json.R' 'cw_wordlist_animal_en.R'
Suggests: covr, testthat
NeedsCompilation: no
Packaged: 2018-01-19 09:42:19 UTC; peter
Repository: CRAN
Date/Publication: 2018-01-19 12:25:58 UTC

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New package pubh with initial version 0.1.6
Package: pubh
Title: A Toolbox for Public Health and Epidemiology
Version: 0.1.6
Authors@R: c( person("Josie", "Athens", email = "josie.athens@otago.ac.nz", role = c("aut", "cre")), person("Deepayan", "Sarkar", email = "deepayan.sarkar@r-project.org", role = "ctb"), person("Mark", "Stevenson", email = "mark.stevenson1@unimelb.edu.au", role = "ctb"), person("Simon", "Firestone", role = "ctb"), person("Cord", "Heuer", role = "ctb"), person("Jim", "Robison-Cox", role = "ctb"), person("Frank", "Harell", email = "f.harrell@vanderbilt.edu", role = "ctb"), person("John", "Fox", email = "jfox@mcmaster.ca", role = "ctb"), person("Kazuki", "Yoshida", role = "ctb"), person("Tomas", "Aragon", role = "ctb"), person("R-Core", role="ctb"))
Maintainer: Josie Athens <josie.athens@otago.ac.nz>
Description: A toolbox for making R functions and capabilities more accessible to students and professionals from Epidemiology and Public Health related disciplines. Includes a function to report coefficients and confidence intervals from models using robust standard errors (when available), functions that expand lattice plots and functions relevant for introductory papers in Epidemiology or Public Health. Please note that use of the provided data sets is for educational purposes only.
Depends: R (>= 3.4.0), lattice, latticeExtra, stats
Imports: car, Epi, epiR, epitools, gee, lmtest, lme4, MASS, multcomp, nlme, nnet, ordinal, sandwich, survival
Suggests: captioner, descr, epibasix, epiDisplay, haven, ISwR, knitr, pander, papeR, psych, rmarkdown, visreg
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
VignetteBuilder: knitr
URL: https://github.com/josie-athens/pubh
BugReports: https://github.com/josie-athens/pubh/issues
NeedsCompilation: no
Packaged: 2018-01-18 20:41:14 UTC; josie
Author: Josie Athens [aut, cre], Deepayan Sarkar [ctb], Mark Stevenson [ctb], Simon Firestone [ctb], Cord Heuer [ctb], Jim Robison-Cox [ctb], Frank Harell [ctb], John Fox [ctb], Kazuki Yoshida [ctb], Tomas Aragon [ctb], R-Core [ctb]
Repository: CRAN
Date/Publication: 2018-01-19 11:37:53 UTC

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Package ICcalib updated to version 1.0.7 with previous version 1.0.6 dated 2018-01-15

Title: Cox Model with Interval-Censored Starting Time of a Covariate
Description: Calibration and risk-set calibration methods for fitting Cox proportional hazard model when a binary covariate is measured intermittently. Methods include functions to fit calibration models from interval-censored data and modified partial likelihood for the proportional hazard model, Nevo et al. (2018+) <arXiv:1801.01529>.
Author: Daniel Nevo
Maintainer: Daniel Nevo <danielnevo@gmail.com>

Diff between ICcalib versions 1.0.6 dated 2018-01-15 and 1.0.7 dated 2018-01-19

 DESCRIPTION             |    8 ++++----
 MD5                     |    4 ++--
 src/FindIntervalCPP.cpp |   16 +---------------
 3 files changed, 7 insertions(+), 21 deletions(-)

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New package Bioi with initial version 0.2.8
Package: Bioi
Title: Biological Image Analysis
Version: 0.2.8
Author: Zachary Colburn
Maintainer: Zachary Colburn <zcolburn@gmail.com>
Description: Single linkage clustering and connected component analyses are often performed on biological images. 'Bioi' provides a set of functions for performing these tasks. This functionality is implemented in several key functions that can extend to from 1 to many dimensions. The single linkage clustering method implemented here can be used on n-dimensional data sets, while connected component analyses are limited to 3 or fewer dimensions.
Depends: R (>= 3.3.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: Rcpp(>= 0.12.13), assertthat(>= 0.2.0), testthat(>= 2.0.0), dplyr(>= 0.7.4), igraph(>= 1.1.2)
LinkingTo: Rcpp
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown, ggplot2
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2018-01-19 01:23:32 UTC; ZacharyColburn
Repository: CRAN
Date/Publication: 2018-01-19 11:52:37 UTC

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Package dmm updated to version 2.1-3 with previous version 2.1-2 dated 2017-09-27

Title: Dyadic Mixed Model for Pedigree Data
Description: Dyadic mixed model analysis with multi-trait responses and pedigree-based partitioning of individual variation into a range of environmental and genetic variance components for individual and maternal effects.
Author: Neville Jackson
Maintainer: Neville Jackson <nanddjackson@bigpond.com>

Diff between dmm versions 2.1-2 dated 2017-09-27 and 2.1-3 dated 2018-01-19

 DESCRIPTION              |    8 ++++----
 MD5                      |   14 +++++++-------
 R/dmesolve.R             |   14 ++++++++++----
 R/dyad.am.expect.R       |   11 +++++++++--
 R/gsummary.dmm.R         |    8 ++++++++
 R/summary.dmm.R          |    8 ++++++++
 inst/doc/dmmOverview.pdf |binary
 inst/doc/mods.txt        |    3 +++
 8 files changed, 49 insertions(+), 17 deletions(-)

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Package PSW updated to version 1.1-3 with previous version 1.1-2 dated 2017-10-09

Title: Propensity Score Weighting Methods for Dichotomous Treatments
Description: Provides propensity score weighting methods to control for confounding in causal inference with dichotomous treatments and continuous/binary outcomes. It includes the following functional modules: (1) visualization of the propensity score distribution in both treatment groups with mirror histogram, (2) covariate balance diagnosis, (3) propensity score model specification test, (4) weighted estimation of treatment effect, and (5) augmented estimation of treatment effect with outcome regression. The weighting methods include the inverse probability weight (IPW) for estimating the average treatment effect (ATE), the IPW for average treatment effect of the treated (ATT), the IPW for the average treatment effect of the controls (ATC), the matching weight (MW), the overlap weight (OVERLAP), and the trapezoidal weight (TRAPEZOIDAL). Sandwich variance estimation is provided to adjust for the sampling variability of the estimated propensity score. These methods are discussed by Hirano et al (2003) <DOI:10.1111/1468-0262.00442>, Lunceford and Davidian (2004) <DOI:10.1002/sim.1903>, Li and Greene (2013) <DOI:10.1515/ijb-2012-0030>, and Li et al (2016) <DOI:10.1080/01621459.2016.1260466>.
Author: Huzhang Mao <huzhangmao@gmail.com>, Liang Li <LLi15@mdanderson.org>
Maintainer: Huzhang Mao <huzhangmao@gmail.com>

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Package Chaos01 updated to version 1.1.0 with previous version 1.0.1 dated 2016-07-25

Title: 0-1 Test for Chaos
Description: Computes and plot the results of the 0-1 test for chaos proposed by Gottwald and Melbourne (2004) <DOI:10.1137/080718851>. The algorithm is available in parallel for the independent values of parameter c.
Author: Tomas Martinovic [aut, cre]
Maintainer: Tomas Martinovic <tomas.martinovic@vsb.cz>

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Package LSAmitR updated to version 1.0-1 with previous version 1.0-0 dated 2016-11-16

Title: Daten, Beispiele und Funktionen zu 'Large-Scale Assessment mit R'
Description: Dieses R-Paket stellt Zusatzmaterial in Form von Daten, Funktionen und R-Hilfe-Seiten für den Herausgeberband Breit, S. und Schreiner, C. (Hrsg.). (2016). "Large-Scale Assessment mit R: Methodische Grundlagen der österreichischen Bildungsstandardüberprüfung." Wien: facultas. (ISBN: 978-3-7089-1343-8, <https://www.bifie.at/node/3770>) zur Verfügung.
Author: Thomas Kiefer [aut, cre], Alexander Robitzsch [aut], Matthias Trendtel [aut], Robert Fellinger [aut]
Maintainer: Thomas Kiefer <t.kiefer@bifie.at>

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Package BeSS (with last version 1.0.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-01-04 1.0.4
2017-08-22 1.0.3
2017-06-29 1.0.2
2017-05-26 1.0.1
2017-04-20 1.0.0

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Package hrr (with last version 1.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-03-10 1.1.1
2014-02-27 1.1.0
2014-02-26 1.0.1

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Package EPGLM (with last version 1.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-08-23 1.1.2
2016-01-09 1.1.1
2015-09-18 1.1
2015-07-31 1.0

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