Thu, 01 Feb 2018

Package pmclust updated to version 0.2-0 with previous version 0.1-9 dated 2016-12-19

Title: Parallel Model-Based Clustering using Expectation-Gathering-Maximization Algorithm for Finite Mixture Gaussian Model
Description: Aims to utilize model-based clustering (unsupervised) for high dimensional and ultra large data, especially in a distributed manner. The code employs 'pbdMPI' to perform a expectation-gathering-maximization algorithm for finite mixture Gaussian models. The unstructured dispersion matrices are assumed in the Gaussian models. The implementation is default in the single program multiple data programming model. The code can be executed through 'pbdMPI' and MPI' implementations such as 'OpenMPI' and 'MPICH'. See the High Performance Statistical Computing website <https://snoweye.github.io/hpsc/> for more information, documents and examples.
Author: Wei-Chen Chen [aut, cre], George Ostrouchov [aut]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

Diff between pmclust versions 0.1-9 dated 2016-12-19 and 0.2-0 dated 2018-02-01

 ChangeLog                   |    3 +++
 DESCRIPTION                 |   21 +++++++++++----------
 MD5                         |   25 +++++++++++++++----------
 NAMESPACE                   |    1 +
 R/00_pmclust_reduceK.r      |only
 R/00_pmclust_reduceK_dmat.r |only
 R/dmat_em_base.r            |   34 ++++++++++++++++++++++++++--------
 R/pm_aecm_base.r            |   33 +++++++++++++++++++++++++--------
 R/pm_apecm_base.r           |    6 +++++-
 R/pm_apecma_base.r          |   33 +++++++++++++++++++++++++--------
 R/pm_em_base.r              |   33 +++++++++++++++++++++++++--------
 data/control.r              |    3 ++-
 man/13_d.control.Rd         |    1 +
 man/zz-internal.Rd          |only
 src/zzz.c                   |only
 src/zzz.h                   |only
 16 files changed, 139 insertions(+), 54 deletions(-)

More information about pmclust at CRAN
Permanent link

Package pbdRPC updated to version 0.2-0 with previous version 0.1-1 dated 2017-01-01

Title: Programming with Big Data -- Remote Procedure Call
Description: A very light implementation yet secure for remote procedure calls with unified interface via ssh (OpenSSH) or plink/plink.exe (PuTTY).
Author: Wei-Chen Chen [aut, cre], Drew Schmidt [aut]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

Diff between pbdRPC versions 0.1-1 dated 2017-01-01 and 0.2-0 dated 2018-02-01

 ChangeLog                                           |   17 ++
 DESCRIPTION                                         |   19 +-
 MD5                                                 |   79 ++++++-----
 NAMESPACE                                           |   10 +
 R/111_control.r                                     |   25 ++-
 R/machine.r                                         |only
 R/pbdRPC-package.r                                  |    4 
 R/rpc.r                                             |  111 ++-------------
 R/rpc_cs_example.r                                  |   96 ++++---------
 R/rpc_options.r                                     |    4 
 R/rpc_pid.r                                         |only
 R/rpc_rr_example.r                                  |  141 +++++++++++---------
 R/srpc.r                                            |only
 R/ssh_plink.r                                       |    9 +
 R/tunnel.r                                          |only
 R/utils.r                                           |only
 README.md                                           |   49 +++++-
 TODO                                                |    2 
 inst/CITATION                                       |   10 -
 inst/doc/pbdRPC-guide.Rnw                           |    1 
 inst/doc/pbdRPC-guide.pdf                           |binary
 man/a0_b_control.Rd                                 |    9 -
 man/a0_c_options.Rd                                 |    9 -
 man/find_plink.Rd                                   |    1 
 man/machine.Rd                                      |only
 man/pbdRPC-package.Rd                               |    7 
 man/print-machine.Rd                                |only
 man/rpc.Rd                                          |   52 -------
 man/rpc_cs_example.Rd                               |   61 ++------
 man/rpc_options.Rd                                  |    7 
 man/rpc_pid.Rd                                      |only
 man/rpc_rr_example.Rd                               |   68 ++++-----
 man/srpc.Rd                                         |only
 man/ssh_plink.Rd                                    |    7 
 man/tunnel.Rd                                       |only
 man/zz_rpc_control.Rd                               |   26 ++-
 vignettes/pbdRPC-guide.Rnw                          |    1 
 vignettes/pbdRPC-include/02-introduction.tex        |   31 ++--
 vignettes/pbdRPC-include/03-login_information.tex   |   14 -
 vignettes/pbdRPC-include/04-application_rr.tex      |   17 +-
 vignettes/pbdRPC-include/05-application_cs.tex      |   17 +-
 vignettes/pbdRPC-include/06-port_forwarding.tex     |   99 ++++++++++++--
 vignettes/pbdRPC-include/07-advance_pbdmpi.tex      |   14 -
 vignettes/pbdRPC-include/08-machine_information.tex |only
 vignettes/pbdRPC-include/99-faq.tex                 |   13 -
 vignettes/pbdRPC-include/pbdRPC.bib                 |    2 
 46 files changed, 525 insertions(+), 507 deletions(-)

More information about pbdRPC at CRAN
Permanent link

Package memery updated to version 0.4.0 with previous version 0.3.1 dated 2017-11-14

Title: Internet Memes for Data Analysts
Description: Generates internet memes that optionally include a superimposed inset plot and other atypical features, combining the visual impact of an attention-grabbing meme with graphic results of data analysis. The package differs from related packages that focus on imitating and reproducing standard memes. Some packages do this by interfacing with online meme generators whereas others achieve this natively. This package takes the latter approach. It does not interface with online meme generators or require any authentication with external websites. It reads images directly from local files or via URL and meme generation is done by the package. While this is similar to the 'meme' package available on CRAN, it differs in that the focus is on allowing for non-standard meme layouts and hybrids of memes mixed with graphs. While this package can be used to make basic memes like an online meme generator would produce, it caters primarily to hybrid graph-meme plots where the meme presentation can be seen as a backdrop highlighting foreground graphs of data analysis results. The package also provides support for an arbitrary number of meme text labels with arbitrary size, position and other attributes rather than restricting to the standard top and/or bottom text placement. This is useful for proper aesthetic interleaving of plots of data between meme image backgrounds and overlain text labels. The package offers a selection of templates for graph placement and appearance with respect to the underlying meme. Graph templates also permit additional template-specific customization. Animated gif support is provided but this is optional and functional only if the 'magick' package is installed. 'magick' is not required unless gif functionality is desired.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <mfleonawicz@alaska.edu>

Diff between memery versions 0.3.1 dated 2017-11-14 and 0.4.0 dated 2018-02-01

 DESCRIPTION                |   12 ++---
 MD5                        |   33 +++++++------
 NAMESPACE                  |    2 
 NEWS.md                    |   14 +++++
 R/inset.R                  |    6 --
 R/meme.R                   |  108 ++++++++++++++++++++++++++++++++++++++++-----
 R/memery.R                 |   36 +++++++++++++++
 build/vignette.rds         |binary
 inst/doc/memery.R          |   20 +++++++-
 inst/doc/memery.Rmd        |   61 +++++++++++++++++++++----
 inst/doc/memery.html       |   46 +++++++++++++++----
 inst/shiny                 |only
 man/inset.Rd               |    8 ++-
 man/meme.Rd                |   60 ++++++++++++++++++++++---
 man/memeApp.Rd             |only
 man/memery.Rd              |    2 
 tests/testthat/test-meme.R |   24 ++++++++++
 vignettes/memery.Rmd       |   61 +++++++++++++++++++++----
 18 files changed, 417 insertions(+), 76 deletions(-)

More information about memery at CRAN
Permanent link

Package FRESA.CAD updated to version 3.0.1 with previous version 3.0.0 dated 2018-02-01

Title: Feature Selection Algorithms for Computer Aided Diagnosis
Description: Contains a set of utilities for building and testing formula-based models (linear, logistic or COX) for Computer Aided Diagnosis/Prognosis applications. Utilities include data adjustment, univariate analysis, model building, model-validation, longitudinal analysis, reporting and visualization.
Author: Jose Gerardo Tamez-Pena, Antonio Martinez-Torteya and Israel Alanis
Maintainer: Jose Gerardo Tamez-Pena <jose.tamezpena@itesm.mx>

Diff between FRESA.CAD versions 3.0.0 dated 2018-02-01 and 3.0.1 dated 2018-02-01

 FRESA.CAD-3.0.0/FRESA.CAD/src/outcheck.txt         |only
 FRESA.CAD-3.0.1/FRESA.CAD/DESCRIPTION              |    8 ++++----
 FRESA.CAD-3.0.1/FRESA.CAD/MD5                      |   11 +++++------
 FRESA.CAD-3.0.1/FRESA.CAD/NAMESPACE                |    2 +-
 FRESA.CAD-3.0.1/FRESA.CAD/NEWS                     |    4 ++++
 FRESA.CAD-3.0.1/FRESA.CAD/man/FRESA.CAD-package.Rd |    4 ++--
 FRESA.CAD-3.0.1/FRESA.CAD/src/FRESACAD_init.cpp    |    5 +++++
 7 files changed, 21 insertions(+), 13 deletions(-)

More information about FRESA.CAD at CRAN
Permanent link

Package cifti updated to version 0.4.5 with previous version 0.4.2 dated 2017-05-05

Title: Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files
Description: Functions for the input/output and visualization of medical imaging data in the form of 'CIFTI' files <https://www.nitrc.org/projects/cifti/>.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between cifti versions 0.4.2 dated 2017-05-05 and 0.4.5 dated 2018-02-01

 DESCRIPTION           |   16 ++++++++++------
 MD5                   |   30 ++++++++++++++++++++----------
 NAMESPACE             |    3 +++
 NEWS.md               |only
 R/aaa_utils.R         |only
 R/get_cifti_type.R    |   24 ++++++++++++++++++++++++
 R/nifti_2_hdr.R       |    3 ++-
 R/parse_parcel.R      |    7 +++++--
 R/read_cifti.R        |   17 +++++++++++++----
 README.md             |   18 +++++++++++++++++-
 build                 |only
 inst                  |only
 man/get_cifti_type.Rd |    4 ++++
 man/nifti_2_hdr.Rd    |    3 ++-
 man/read_cifti.Rd     |    5 +++--
 vignettes             |only
 16 files changed, 103 insertions(+), 27 deletions(-)

More information about cifti at CRAN
Permanent link

New package cbsodataR with initial version 0.2.5
Package: cbsodataR
Type: Package
Title: Statistics Netherlands (CBS) Open Data API Client
Version: 0.2.5
Author: Edwin de Jonge
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Description: The data and meta data from Statistics Netherlands (www.cbs.nl) can be browsed and downloaded. The client uses the open data API of Statistics Netherlands.
License: GPL-2
URL: https://github.com/edwindj/cbsodataR
BugReports: https://github.com/edwindj/cbsodataR/issues
Imports: whisker, jsonlite, yaml, utils, httr
Suggests: knitr, rmarkdown, dplyr, shiny
VignetteBuilder: knitr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-02-01 23:10:12 UTC; edwin
Repository: CRAN
Date/Publication: 2018-02-01 23:27:33 UTC

More information about cbsodataR at CRAN
Permanent link

New package bigsnpr with initial version 0.2.4
Encoding: UTF-8
Package: bigsnpr
Type: Package
Title: Analysis of Massive SNP Arrays
Version: 0.2.4
Date: 2018-02-01
Authors@R: c( person("Florian", "Privé", email = "florian.prive.21@gmail.com", role = c("aut", "cre")), person("Michael", "Blum", email = "michael.blum@univ-grenoble-alpes.fr", role = "ths"), person("Hugues", "Aschard", email = "hugues.aschard@pasteur.fr", role = "ths"))
Description: Easy-to-use, efficient, flexible and scalable tools for the analysis of massive SNP arrays. Preprint: Privé et al. (2017) <doi:10.1101/190926>.
License: GPL-3
LazyData: TRUE
Language: en-US
ByteCompile: TRUE
Depends: R (>= 3.2.3), bigstatsr (>= 0.2.3)
Imports: data.table, doParallel, dplyr, foreach, ggplot2, gsubfn, Matrix, parallel, Rcpp, reshape2, robust, stats, xgboost
LinkingTo: BH, bigstatsr, Rcpp, RcppArmadillo
Suggests: spelling, covr, gaston, Hmisc, magrittr, pcadapt, testthat
RoxygenNote: 6.0.1
URL: https://privefl.github.io/bigsnpr
BugReports: https://github.com/privefl/bigsnpr/issues
NeedsCompilation: yes
Packaged: 2018-02-01 17:23:34 UTC; privef
Author: Florian Privé [aut, cre], Michael Blum [ths], Hugues Aschard [ths]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Repository: CRAN
Date/Publication: 2018-02-01 23:01:38 UTC

More information about bigsnpr at CRAN
Permanent link

Package viridisLite updated to version 0.3.0 with previous version 0.2.0 dated 2017-03-24

Title: Default Color Maps from 'matplotlib' (Lite Version)
Description: Implementation of the 'viridis' - the default -, 'magma', 'plasma', 'inferno', and 'cividis' color maps for 'R'. 'viridis', 'magma', 'plasma', and 'inferno' are ported from 'matplotlib' <http://matplotlib.org/>, a popular plotting library for 'python'. 'cividis', was developed by Jamie R. Nuñez and Sean M. Colby. These color maps are designed in such a way that they will analytically be perfectly perceptually-uniform, both in regular form and also when converted to black-and-white. They are also designed to be perceived by readers with the most common form of color blindness (all color maps in this package) and color vision deficiency ('cividis' only). This is the 'lite' version of the more complete 'viridis' package that can be found at <https://cran.r-project.org/package=viridis>.
Author: Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Cédric Scherer [ctb, cph]
Maintainer: Simon Garnier <garnier@njit.edu>

Diff between viridisLite versions 0.2.0 dated 2017-03-24 and 0.3.0 dated 2018-02-01

 viridisLite-0.2.0/viridisLite/README.md                      |only
 viridisLite-0.3.0/viridisLite/DESCRIPTION                    |   33 +++++---
 viridisLite-0.3.0/viridisLite/MD5                            |   17 ++--
 viridisLite-0.3.0/viridisLite/NAMESPACE                      |    1 
 viridisLite-0.3.0/viridisLite/R/viridis.R                    |   41 ++++++++---
 viridisLite-0.3.0/viridisLite/data/viridis.map.rda           |binary
 viridisLite-0.3.0/viridisLite/man/figures/viridis-scales.png |binary
 viridisLite-0.3.0/viridisLite/man/viridis.Rd                 |   23 ++++--
 viridisLite-0.3.0/viridisLite/man/viridis.map.Rd             |   12 ++-
 viridisLite-0.3.0/viridisLite/tests/testthat/test-palettes.R |   13 ++-
 10 files changed, 96 insertions(+), 44 deletions(-)

More information about viridisLite at CRAN
Permanent link

Package topmodel updated to version 0.7.3 with previous version 0.7.2-2 dated 2011-01-11

Title: Implementation of the Hydrological Model TOPMODEL in R
Description: Set of hydrological functions including an R implementation of the hydrological model TOPMODEL, which is based on the 1995 FORTRAN version by Keith Beven. From version 0.7.0, the package is put into maintenance mode.
Author: Wouter Buytaert
Maintainer: Wouter Buytaert <w.buytaert@imperial.ac.uk>

Diff between topmodel versions 0.7.2-2 dated 2011-01-11 and 0.7.3 dated 2018-02-01

 topmodel-0.7.2-2/topmodel/doc                 |only
 topmodel-0.7.2-2/topmodel/src/flowlength.c    |only
 topmodel-0.7.2-2/topmodel/src/infiltration.c  |only
 topmodel-0.7.2-2/topmodel/src/sinkfill.c      |only
 topmodel-0.7.2-2/topmodel/src/streamorder.c   |only
 topmodel-0.7.2-2/topmodel/src/subcatch.c      |only
 topmodel-0.7.2-2/topmodel/src/topidx.c        |only
 topmodel-0.7.2-2/topmodel/src/topmodel.c      |only
 topmodel-0.7.3/topmodel/DESCRIPTION           |   20 +++++++++-----------
 topmodel-0.7.3/topmodel/MD5                   |only
 topmodel-0.7.3/topmodel/NAMESPACE             |    4 +++-
 topmodel-0.7.3/topmodel/R/flowlength.R        |    2 +-
 topmodel-0.7.3/topmodel/R/infiltration.R      |    2 +-
 topmodel-0.7.3/topmodel/R/sinkfill.R          |    2 +-
 topmodel-0.7.3/topmodel/R/streamorder.R       |    2 +-
 topmodel-0.7.3/topmodel/R/subcatch.R          |    2 +-
 topmodel-0.7.3/topmodel/R/topidx.R            |    2 +-
 topmodel-0.7.3/topmodel/R/topmodel.R          |    6 +++---
 topmodel-0.7.3/topmodel/data/huagrahuma.RData |binary
 topmodel-0.7.3/topmodel/man/flowlength.Rd     |    2 +-
 topmodel-0.7.3/topmodel/man/huagrahuma.Rd     |    4 ++--
 topmodel-0.7.3/topmodel/man/infiltration.Rd   |    2 +-
 topmodel-0.7.3/topmodel/man/outlet.Rd         |    2 +-
 topmodel-0.7.3/topmodel/man/river.Rd          |    2 +-
 topmodel-0.7.3/topmodel/man/sinkfill.Rd       |    2 +-
 topmodel-0.7.3/topmodel/man/subcatch.Rd       |    2 +-
 topmodel-0.7.3/topmodel/man/topidx.Rd         |    2 +-
 topmodel-0.7.3/topmodel/man/topmodel.Rd       |   12 ++++++------
 topmodel-0.7.3/topmodel/src/c_flowlength.c    |only
 topmodel-0.7.3/topmodel/src/c_infiltration.c  |only
 topmodel-0.7.3/topmodel/src/c_sinkfill.c      |only
 topmodel-0.7.3/topmodel/src/c_streamorder.c   |only
 topmodel-0.7.3/topmodel/src/c_subcatch.c      |only
 topmodel-0.7.3/topmodel/src/c_topidx.c        |only
 topmodel-0.7.3/topmodel/src/c_topmodel.c      |only
 topmodel-0.7.3/topmodel/src/core_topmodel.c   |    6 +++---
 topmodel-0.7.3/topmodel/src/river.c           |    4 ++--
 topmodel-0.7.3/topmodel/src/topmodel_init.c   |only
 38 files changed, 41 insertions(+), 41 deletions(-)

More information about topmodel at CRAN
Permanent link

Package SpaDES.tools updated to version 0.1.1 with previous version 0.1.0 dated 2017-08-12

Title: Additional Tools for Developing Spatially Explicit Discrete Event Simulation (SpaDES) Models
Description: Provides GIS and map utilities, plus additional modeling tools for developing cellular automata, dynamic raster models, and agent based models in 'SpaDES'. Included are various methods for spatial spreading, spatial agents, GIS operations, random map generation, and others. See '?SpaDES.tools' for an categorized overview of these additional tools.
Author: Alex M Chubaty [aut, cre], Eliot J B McIntire [aut], Yong Luo [ctb], Steve Cumming [ctb], Jean Marchal [ctb], Her Majesty the Queen in Right of Canada, as represented by the Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alexander.chubaty@canada.ca>

Diff between SpaDES.tools versions 0.1.0 dated 2017-08-12 and 0.1.1 dated 2018-02-01

 .aspell/defaults.R                            |   12 
 DESCRIPTION                                   |   45 
 MD5                                           |  153 -
 NAMESPACE                                     |  269 +-
 NEWS.md                                       |   18 
 R/RcppExports.R                               |  140 -
 R/SELES.R                                     |  590 +++---
 R/distanceFromEachPoint.R                     |  820 ++++----
 R/downloadInputs.R                            |only
 R/environment.R                               |   14 
 R/gis.R                                       |only
 R/heading.R                                   |  174 -
 R/initialize.R                                |  763 ++++---
 R/mapReduce.R                                 |  148 -
 R/mergeRaster.R                               |  134 -
 R/movement.R                                  |  252 +-
 R/neighbourhood.R                             | 2140 +++++++++++-----------
 R/numerical-comparisons.R                     |   74 
 R/resample.R                                  |   72 
 R/rings.R                                     |  186 -
 R/spades-tools-package.R                      |  218 +-
 R/splitRaster.R                               |  232 +-
 R/spread.R                                    | 2324 +++++++++++------------
 R/spread2.R                                   | 2102 +++++++++++----------
 R/zzz.R                                       |   42 
 README.md                                     |   97 -
 inst/examples/example_cir.R                   |  174 -
 inst/examples/example_distanceFromEachPoint.R |  100 -
 inst/examples/example_mapReduce.R             |   44 
 inst/examples/example_rings.R                 |   76 
 inst/examples/example_splitRaster.R           |  118 -
 inst/examples/example_spokes.R                |   74 
 inst/examples/example_spread.R                |  552 ++---
 inst/examples/example_spread2.R               |  254 +-
 man/SELESagentLocation.Rd                     |   54 
 man/SELESnumAgents.Rd                         |   56 
 man/SELESprobInit.Rd                          |   86 
 man/SELEStransitions.Rd                       |   58 
 man/SpaDES.tools-package.Rd                   |  269 +-
 man/adj.Rd                                    |  248 +-
 man/cir.Rd                                    |  404 +---
 man/cirSpecialQuick.Rd                        |only
 man/crw.Rd                                    |  162 -
 man/directions.Rd                             |  178 -
 man/distances.Rd                              |  390 ++--
 man/duplicated.Rd                             |   36 
 man/extractFromArchive.Rd                     |only
 man/fastCrop.Rd                               |only
 man/fastMask.Rd                               |only
 man/findFactors.Rd                            |   38 
 man/gaussmap.Rd                               |   98 -
 man/heading.Rd                                |  126 -
 man/inRange.Rd                                |   62 
 man/initiateAgents.Rd                         |  174 -
 man/match.Rd                                  |   36 
 man/matchedPointDirection.Rd                  |   26 
 man/patchSize.Rd                              |   28 
 man/pkgEnv.Rd                                 |   28 
 man/prepInputs.Rd                             |only
 man/randomPolygons.Rd                         |  124 -
 man/rasterizeReduce.Rd                        |  128 -
 man/rcpp-extras.Rd                            |   34 
 man/resample.Rd                               |   64 
 man/rings.Rd                                  |  234 +-
 man/sampleV.Rd                                |   60 
 man/specnumperpatch-probs.Rd                  |  130 -
 man/splitRaster.Rd                            |  284 +-
 man/spokes.Rd                                 |  260 +-
 man/spread.Rd                                 | 1262 ++++++-------
 man/spread2-internals.Rd                      |   96 
 man/spread2.Rd                                |  891 ++++-----
 man/wrap.Rd                                   |  186 -
 tests/test-all.R                              |    4 
 tests/testthat/test-adj.R                     |  322 +--
 tests/testthat/test-examples.R                |   22 
 tests/testthat/test-gis.R                     |only
 tests/testthat/test-inRange.R                 |   48 
 tests/testthat/test-mapReduce.R               |  206 +-
 tests/testthat/test-randomPolygon.R           |only
 tests/testthat/test-spelling.R                |   58 
 tests/testthat/test-splitRaster.R             |  536 ++---
 tests/testthat/test-spread.R                  | 2519 +++++++++++++-------------
 tests/testthat/test-spread2.R                 | 1769 +++++++++---------
 83 files changed, 12208 insertions(+), 11997 deletions(-)

More information about SpaDES.tools at CRAN
Permanent link

Package solvebio updated to version 2.3.1 with previous version 2.3.0 dated 2018-01-08

Title: The Official SolveBio API Client
Description: R language bindings for SolveBio's API. SolveBio is a biomedical knowledge hub that enables life science organizations to collect and harmonize the complex, disparate "multi-omic" data essential for today's R&D and BI needs. For more information, visit <https://www.solvebio.com>.
Author: David Caplan
Maintainer: David Caplan <dcaplan@solvebio.com>

Diff between solvebio versions 2.3.0 dated 2018-01-08 and 2.3.1 dated 2018-02-01

 DESCRIPTION |    8 ++++----
 MD5         |   12 ++++++------
 NEWS.md     |    6 ++++++
 R/dataset.R |   37 ++++++++++++-------------------------
 R/object.R  |   11 -----------
 R/utils.R   |   43 +++++++++++++++++++++++++------------------
 R/vault.R   |   35 +++++++++++++++--------------------
 7 files changed, 68 insertions(+), 84 deletions(-)

More information about solvebio at CRAN
Permanent link

Package rio updated to version 0.5.9 with previous version 0.5.5 dated 2017-06-18

Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that the user is probably willing to make: 'import()' and 'export()' determine the data structure from the file extension, reasonable defaults are used for data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is natively supported (including from SSL/HTTPS), compressed files can be read directly without explicit decompression, and fast import packages are used where appropriate. An additional convenience function, 'convert()', provides a simple method for converting between file types.
Author: Jason Becker [ctb], Chung-hong Chan [aut], Geoffrey CH Chan [ctb], Thomas J. Leeper [aut, cre] (<https://orcid.org/0000-0003-4097-6326>), Christopher Gandrud [ctb], Andrew MacDonald [ctb], Ista Zahn [ctb], Stanislaus Stadlmann [ctb], Ruaridh Williamson [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>

Diff between rio versions 0.5.5 dated 2017-06-18 and 0.5.9 dated 2018-02-01

 rio |only
 1 file changed

More information about rio at CRAN
Permanent link

Package neurobase updated to version 1.26.1 with previous version 1.13.2 dated 2017-03-03

Title: 'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects
Description: Base package for 'Neuroconductor', which includes many helper functions that interact with objects of class 'nifti', implemented by package 'oro.nifti', for reading/writing and also other manipulation functions.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between neurobase versions 1.13.2 dated 2017-03-03 and 1.26.1 dated 2018-02-01

 neurobase-1.13.2/neurobase/man/applyEmptyImageDimensions.Rd         |only
 neurobase-1.13.2/neurobase/man/maskEmptyImageDimensions.Rd          |only
 neurobase-1.13.2/neurobase/vignettes/nifti_basics_cache             |only
 neurobase-1.13.2/neurobase/vignettes/nifti_basics_files             |only
 neurobase-1.26.1/neurobase/DESCRIPTION                              |   33 
 neurobase-1.26.1/neurobase/MD5                                      |  164 +-
 neurobase-1.26.1/neurobase/NAMESPACE                                |   52 
 neurobase-1.26.1/neurobase/R/applyEmptyImageDimensions.R            |  152 +
 neurobase-1.26.1/neurobase/R/breaker.R                              |    2 
 neurobase-1.26.1/neurobase/R/check_nifti.R                          |  161 +-
 neurobase-1.26.1/neurobase/R/check_nifti_header.R                   |only
 neurobase-1.26.1/neurobase/R/checkimg.R                             |    2 
 neurobase-1.26.1/neurobase/R/cog.R                                  |    2 
 neurobase-1.26.1/neurobase/R/cut.R                                  |only
 neurobase-1.26.1/neurobase/R/dicer.R                                |only
 neurobase-1.26.1/neurobase/R/dropEmptyImageDimensions.R             |   77 
 neurobase-1.26.1/neurobase/R/emptyImageDimensionsMask.R             |only
 neurobase-1.26.1/neurobase/R/ensure_array.R                         |only
 neurobase-1.26.1/neurobase/R/finite_img.R                           |    2 
 neurobase-1.26.1/neurobase/R/flip_img.R                             |only
 neurobase-1.26.1/neurobase/R/getEmptyImageDimensions.R              |    7 
 neurobase-1.26.1/neurobase/R/img_color_df.R                         |only
 neurobase-1.26.1/neurobase/R/img_indices.R                          |    2 
 neurobase-1.26.1/neurobase/R/img_ts_to_list.R                       |only
 neurobase-1.26.1/neurobase/R/maskEmptyImageDimensions.R             |  203 ++
 neurobase-1.26.1/neurobase/R/mask_img.R                             |   52 
 neurobase-1.26.1/neurobase/R/mask_vals.R                            |    2 
 neurobase-1.26.1/neurobase/R/minmax_img.R                           |only
 neurobase-1.26.1/neurobase/R/nii.stub.R                             |    4 
 neurobase-1.26.1/neurobase/R/ortho2.R                               |   83 -
 neurobase-1.26.1/neurobase/R/overlay2.R                             |   19 
 neurobase-1.26.1/neurobase/R/parse_img_ext.R                        |   12 
 neurobase-1.26.1/neurobase/R/quantile.nifti.R                       |    2 
 neurobase-1.26.1/neurobase/R/quantile_img.R                         |    2 
 neurobase-1.26.1/neurobase/R/readNIfTI2.R                           |   17 
 neurobase-1.26.1/neurobase/R/remap_filename.R                       |   14 
 neurobase-1.26.1/neurobase/R/replace_dropped_dimensions.R           |    2 
 neurobase-1.26.1/neurobase/R/rescale_img.R                          |  158 --
 neurobase-1.26.1/neurobase/R/separate_img.R                         |only
 neurobase-1.26.1/neurobase/R/slice_colour_df.R                      |only
 neurobase-1.26.1/neurobase/R/subset_dti.R                           |only
 neurobase-1.26.1/neurobase/R/window_img.R                           |  117 +
 neurobase-1.26.1/neurobase/R/write_nifti.R                          |only
 neurobase-1.26.1/neurobase/R/writenii.R                             |   14 
 neurobase-1.26.1/neurobase/R/zlimmer.R                              |   12 
 neurobase-1.26.1/neurobase/R/zscore_img.R                           |only
 neurobase-1.26.1/neurobase/build/vignette.rds                       |binary
 neurobase-1.26.1/neurobase/inst/doc/neurobase.html                  |  654 +++++---
 neurobase-1.26.1/neurobase/inst/doc/nifti_basics.R                  |    7 
 neurobase-1.26.1/neurobase/inst/doc/nifti_basics.Rmd                |    2 
 neurobase-1.26.1/neurobase/inst/doc/nifti_basics.html               |  779 ++++++----
 neurobase-1.26.1/neurobase/man/applyEmptyImageDimensions-methods.Rd |only
 neurobase-1.26.1/neurobase/man/breaker.Rd                           |    2 
 neurobase-1.26.1/neurobase/man/check_nifti-methods.Rd               |   21 
 neurobase-1.26.1/neurobase/man/check_nifti_header-methods.Rd        |only
 neurobase-1.26.1/neurobase/man/colorbar.Rd                          |    2 
 neurobase-1.26.1/neurobase/man/cut.nifti.Rd                         |only
 neurobase-1.26.1/neurobase/man/dicer.Rd                             |only
 neurobase-1.26.1/neurobase/man/emptyImageDimensionsMask.Rd          |only
 neurobase-1.26.1/neurobase/man/ensure_array.Rd                      |only
 neurobase-1.26.1/neurobase/man/flip_img.Rd                          |only
 neurobase-1.26.1/neurobase/man/img_colour_df.Rd                     |only
 neurobase-1.26.1/neurobase/man/img_indices.Rd                       |    2 
 neurobase-1.26.1/neurobase/man/img_list_to_ts.Rd                    |only
 neurobase-1.26.1/neurobase/man/img_ts_to_df.Rd                      |only
 neurobase-1.26.1/neurobase/man/img_ts_to_list.Rd                    |only
 neurobase-1.26.1/neurobase/man/img_ts_to_matrix.Rd                  |only
 neurobase-1.26.1/neurobase/man/maskEmptyImageDimensions-methods.Rd  |only
 neurobase-1.26.1/neurobase/man/mask_img.Rd                          |    4 
 neurobase-1.26.1/neurobase/man/mask_vals-methods.Rd                 |    2 
 neurobase-1.26.1/neurobase/man/minmax_img-methods.Rd                |only
 neurobase-1.26.1/neurobase/man/multi_overlay.Rd                     |    8 
 neurobase-1.26.1/neurobase/man/nii.stub.Rd                          |    5 
 neurobase-1.26.1/neurobase/man/ortho2.Rd                            |   23 
 neurobase-1.26.1/neurobase/man/quantile.nifti.Rd                    |    2 
 neurobase-1.26.1/neurobase/man/quantile_img.Rd                      |    2 
 neurobase-1.26.1/neurobase/man/readNIfTI2.Rd                        |    7 
 neurobase-1.26.1/neurobase/man/remap_filename.Rd                    |    8 
 neurobase-1.26.1/neurobase/man/replace_dropped_dimensions.Rd        |    2 
 neurobase-1.26.1/neurobase/man/separate_img-methods.Rd              |only
 neurobase-1.26.1/neurobase/man/slice_colour_df.Rd                   |only
 neurobase-1.26.1/neurobase/man/subset_dti-methods.Rd                |only
 neurobase-1.26.1/neurobase/man/window_img.Rd                        |   23 
 neurobase-1.26.1/neurobase/man/writeNIfTI2.Rd                       |    9 
 neurobase-1.26.1/neurobase/man/write_nifti.Rd                       |only
 neurobase-1.26.1/neurobase/man/xyz.Rd                               |    2 
 neurobase-1.26.1/neurobase/man/zlimmer.Rd                           |    5 
 neurobase-1.26.1/neurobase/man/zscore_img.Rd                        |   24 
 neurobase-1.26.1/neurobase/vignettes/nifti_basics.Rmd               |    2 
 89 files changed, 1883 insertions(+), 1083 deletions(-)

More information about neurobase at CRAN
Permanent link

Package matlabr updated to version 1.5.0 with previous version 1.4.3 dated 2017-10-11

Title: An Interface for MATLAB using System Calls
Description: Provides users to call MATLAB from using the "system" command. Allows users to submit lines of code or MATLAB m files. This is in comparison to 'R.matlab', which creates a MATLAB server.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between matlabr versions 1.4.3 dated 2017-10-11 and 1.5.0 dated 2018-02-01

 DESCRIPTION              |    8 ++++----
 MD5                      |   10 +++++-----
 NEWS.md                  |    4 ++++
 R/matlab_script.R        |   16 +++++++++++++---
 man/get_matlab.Rd        |    5 ++++-
 man/run_matlab_script.Rd |    5 ++++-
 6 files changed, 34 insertions(+), 14 deletions(-)

More information about matlabr at CRAN
Permanent link

Package kirby21.t1 updated to version 1.6.0 with previous version 1.5.1 dated 2017-03-02

Title: Example T1 Structural Data from the Multi-Modal MRI 'Reproducibility' Resource
Description: Structural T1 magnetic resonance imaging ('MRI') data from the 'Kirby21' 'reproducibility' study <doi:10.1016/j.neuroimage.2010.11.047>.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between kirby21.t1 versions 1.5.1 dated 2017-03-02 and 1.6.0 dated 2018-02-01

 DESCRIPTION             |   17 +++++++++--------
 MD5                     |    7 ++++---
 NEWS.md                 |only
 R/get_t1_filenames.R    |    2 +-
 man/get_t1_filenames.Rd |    2 +-
 5 files changed, 15 insertions(+), 13 deletions(-)

More information about kirby21.t1 at CRAN
Permanent link

Package heatmaply updated to version 0.14.1 with previous version 0.14.0 dated 2018-01-20

Title: Interactive Cluster Heat Maps Using 'plotly'
Description: Create interactive cluster 'heatmaps' that can be saved as a stand- alone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app, and available in the 'RStudio' viewer pane. Hover the mouse pointer over a cell to show details or drag a rectangle to zoom. A 'heatmap' is a popular graphical method for visualizing high-dimensional data, in which a table of numbers are encoded as a grid of colored cells. The rows and columns of the matrix are ordered to highlight patterns and are often accompanied by 'dendrograms'. 'Heatmaps' are used in many fields for visualizing observations, correlations, missing values patterns, and more. Interactive 'heatmaps' allow the inspection of specific value by hovering the mouse over a cell, as well as zooming into a region of the 'heatmap' by dragging a rectangle around the relevant area. This work is based on the 'ggplot2' and 'plotly.js' engine. It produces similar 'heatmaps' as 'heatmap.2' or 'd3heatmap', with the advantage of speed ('plotly.js' is able to handle larger size matrix), the ability to zoom from the 'dendrogram' panes, and the placing of factor variables in the sides of the 'heatmap'.
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Jonathan Sidi [ctb] (https://github.com/yonicd), Alan O'Callaghan [ctb] (https://github.com/Alanocallaghan), Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>

Diff between heatmaply versions 0.14.0 dated 2018-01-20 and 0.14.1 dated 2018-02-01

 ChangeLog               |   36 ++++++++++++++++++++++--
 DESCRIPTION             |    8 ++---
 MD5                     |   20 ++++++-------
 NEWS                    |   10 ++++++
 NEWS.md                 |   10 ++++++
 R/heatmaply.R           |    6 ----
 R/heatmapr.R            |   10 +++++-
 R/plots.R               |   17 +++++------
 inst/doc/heatmaply.html |   70 ++++++++++++++++++++++++------------------------
 man/heatmaply.Rd        |    2 -
 man/heatmapr.Rd         |    5 ++-
 11 files changed, 123 insertions(+), 71 deletions(-)

More information about heatmaply at CRAN
Permanent link

Package googleway updated to version 2.4.0 with previous version 2.2.0 dated 2017-06-25

Title: Accesses Google Maps APIs to Retrieve Data and Plot Maps
Description: Provides a mechanism to plot a Google Map from R and overlay it with shapes and markers. Also provides access to Google Maps APIs, including places, directions, roads, distances, geocoding, elevation and timezone.
Author: David Cooley [aut, cre], Paulo Barcelos [ctb] (Author of c++ decode_pl), Rstudio [ctb] (Functions written for the Leaflet pacakge)
Maintainer: David Cooley <dcooley@symbolix.com.au>

Diff between googleway versions 2.2.0 dated 2017-06-25 and 2.4.0 dated 2018-02-01

 googleway-2.2.0/googleway/R/get_route.R                                       |only
 googleway-2.2.0/googleway/R/methods_polyline.R                                |only
 googleway-2.2.0/googleway/man/get_route.Rd                                    |only
 googleway-2.2.0/googleway/src/googleway_init.c                                |only
 googleway-2.2.0/googleway/src/polyline_encode.cpp                             |only
 googleway-2.2.0/googleway/tests/testthat/test-get_route.R                     |only
 googleway-2.2.0/googleway/vignettes/img/melbourne_polygons.png                |only
 googleway-2.2.0/googleway/vignettes/img/melbourne_to_sydney.png               |only
 googleway-2.2.0/googleway/vignettes/img/nearest_roads.png                     |only
 googleway-2.2.0/googleway/vignettes/img/snap_to_roads.png                     |only
 googleway-2.4.0/googleway/DESCRIPTION                                         |   15 
 googleway-2.4.0/googleway/MD5                                                 |  290 -
 googleway-2.4.0/googleway/NAMESPACE                                           |  112 
 googleway-2.4.0/googleway/R/RcppExports.R                                     |    6 
 googleway-2.4.0/googleway/R/colours.R                                         |only
 googleway-2.4.0/googleway/R/data.R                                            |    9 
 googleway-2.4.0/googleway/R/google_directions.R                               |  105 
 googleway-2.4.0/googleway/R/google_distance.R                                 |   63 
 googleway-2.4.0/googleway/R/google_elevation.R                                |   16 
 googleway-2.4.0/googleway/R/google_geocode.R                                  |   57 
 googleway-2.4.0/googleway/R/google_keys.R                                     |only
 googleway-2.4.0/googleway/R/google_map.R                                      |  154 
 googleway-2.4.0/googleway/R/google_map_layer_circle.R                         |only
 googleway-2.4.0/googleway/R/google_map_layer_drawing.R                        |only
 googleway-2.4.0/googleway/R/google_map_layer_fusion.R                         |only
 googleway-2.4.0/googleway/R/google_map_layer_geojson.R                        |only
 googleway-2.4.0/googleway/R/google_map_layer_heatmap.R                        |only
 googleway-2.4.0/googleway/R/google_map_layer_kml.R                            |only
 googleway-2.4.0/googleway/R/google_map_layer_marker.R                         |only
 googleway-2.4.0/googleway/R/google_map_layer_methods.R                        |only
 googleway-2.4.0/googleway/R/google_map_layer_overlay.R                        |only
 googleway-2.4.0/googleway/R/google_map_layer_parameters.R                     |only
 googleway-2.4.0/googleway/R/google_map_layer_polygon.R                        |only
 googleway-2.4.0/googleway/R/google_map_layer_polyline.R                       |only
 googleway-2.4.0/googleway/R/google_map_layer_rectangle.R                      |only
 googleway-2.4.0/googleway/R/google_map_layer_sf.R                             |only
 googleway-2.4.0/googleway/R/google_map_layers.R                               | 1817 ---------
 googleway-2.4.0/googleway/R/google_map_shape_constructors.R                   |only
 googleway-2.4.0/googleway/R/google_map_urls.R                                 |only
 googleway-2.4.0/googleway/R/google_place_autocomplete.R                       |   55 
 googleway-2.4.0/googleway/R/google_place_details.R                            |   20 
 googleway-2.4.0/googleway/R/google_places.R                                   |  142 
 googleway-2.4.0/googleway/R/google_reverse_geocode.R                          |   58 
 googleway-2.4.0/googleway/R/google_roads.R                                    |   36 
 googleway-2.4.0/googleway/R/google_streetview.R                               |   39 
 googleway-2.4.0/googleway/R/google_timezone.R                                 |   27 
 googleway-2.4.0/googleway/R/google_utilities.R                                |  212 -
 googleway-2.4.0/googleway/R/googleway-package.R                               |  176 
 googleway-2.4.0/googleway/R/legend.R                                          |only
 googleway-2.4.0/googleway/R/onLoad.R                                          |only
 googleway-2.4.0/googleway/R/parameter_checks.R                                |  553 ++
 googleway-2.4.0/googleway/R/polyline.R                                        |    4 
 googleway-2.4.0/googleway/R/polyline_constructors.R                           |only
 googleway-2.4.0/googleway/R/results_access.R                                  |only
 googleway-2.4.0/googleway/R/results_directions.R                              |only
 googleway-2.4.0/googleway/R/results_distance.R                                |only
 googleway-2.4.0/googleway/R/results_elevation.R                               |only
 googleway-2.4.0/googleway/R/results_geocode.R                                 |only
 googleway-2.4.0/googleway/R/results_places.R                                  |only
 googleway-2.4.0/googleway/R/results_roads.R                                   |only
 googleway-2.4.0/googleway/R/scratch.R                                         |    7 
 googleway-2.4.0/googleway/build/vignette.rds                                  |binary
 googleway-2.4.0/googleway/data/geo_melbourne.rda                              |only
 googleway-2.4.0/googleway/data/melbourne.rda                                  |binary
 googleway-2.4.0/googleway/inst/doc/googleway-vignette.R                       |   19 
 googleway-2.4.0/googleway/inst/doc/googleway-vignette.Rmd                     |  717 +++
 googleway-2.4.0/googleway/inst/doc/googleway-vignette.html                    |  734 +++
 googleway-2.4.0/googleway/inst/htmlwidgets/google_map.js                      | 1885 +---------
 googleway-2.4.0/googleway/inst/htmlwidgets/google_map.yaml                    |   58 
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/circles.js                     |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/drawing.js                     |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/fusion.js                      |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/geojson.js                     |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/heatmap.js                     |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/kml.js                         |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/legend.js                      |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/map_events.js                  |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/map_layer_methods.js           |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/map_layers.js                  |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/map_style.css                  |   69 
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/markers.js                     |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/overlay.js                     |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/polygons.js                    |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/polylines.js                   |only
 googleway-2.4.0/googleway/inst/htmlwidgets/lib/rectangles.js                  |only
 googleway-2.4.0/googleway/man/access_result.Rd                                |only
 googleway-2.4.0/googleway/man/add_bicycling.Rd                                |    4 
 googleway-2.4.0/googleway/man/add_circles.Rd                                  |  126 
 googleway-2.4.0/googleway/man/add_dragdrop.Rd                                 |only
 googleway-2.4.0/googleway/man/add_drawing.Rd                                  |only
 googleway-2.4.0/googleway/man/add_fusion.Rd                                   |   71 
 googleway-2.4.0/googleway/man/add_geojson.Rd                                  |only
 googleway-2.4.0/googleway/man/add_heatmap.Rd                                  |   37 
 googleway-2.4.0/googleway/man/add_kml.Rd                                      |    8 
 googleway-2.4.0/googleway/man/add_markers.Rd                                  |   42 
 googleway-2.4.0/googleway/man/add_overlay.Rd                                  |   13 
 googleway-2.4.0/googleway/man/add_polygons.Rd                                 |  109 
 googleway-2.4.0/googleway/man/add_polylines.Rd                                |  106 
 googleway-2.4.0/googleway/man/add_rectangles.Rd                               |   86 
 googleway-2.4.0/googleway/man/add_traffic.Rd                                  |    4 
 googleway-2.4.0/googleway/man/add_transit.Rd                                  |    4 
 googleway-2.4.0/googleway/man/clear.Rd                                        |   51 
 googleway-2.4.0/googleway/man/clear_keys.Rd                                   |only
 googleway-2.4.0/googleway/man/clear_search.Rd                                 |    3 
 googleway-2.4.0/googleway/man/decode_pl.Rd                                    |    1 
 googleway-2.4.0/googleway/man/encode_pl.Rd                                    |    1 
 googleway-2.4.0/googleway/man/geo_melbourne.Rd                                |only
 googleway-2.4.0/googleway/man/google_directions.Rd                            |   55 
 googleway-2.4.0/googleway/man/google_dispatch.Rd                              |    6 
 googleway-2.4.0/googleway/man/google_distance.Rd                              |   27 
 googleway-2.4.0/googleway/man/google_elevation.Rd                             |    7 
 googleway-2.4.0/googleway/man/google_geocode.Rd                               |    8 
 googleway-2.4.0/googleway/man/google_keys.Rd                                  |only
 googleway-2.4.0/googleway/man/google_map-shiny.Rd                             |    1 
 googleway-2.4.0/googleway/man/google_map.Rd                                   |   47 
 googleway-2.4.0/googleway/man/google_map_directions.Rd                        |only
 googleway-2.4.0/googleway/man/google_map_panorama.Rd                          |only
 googleway-2.4.0/googleway/man/google_map_search.Rd                            |only
 googleway-2.4.0/googleway/man/google_map_update.Rd                            |    1 
 googleway-2.4.0/googleway/man/google_map_url.Rd                               |only
 googleway-2.4.0/googleway/man/google_nearestRoads.Rd                          |    8 
 googleway-2.4.0/googleway/man/google_place_autocomplete.Rd                    |    9 
 googleway-2.4.0/googleway/man/google_place_details.Rd                         |    9 
 googleway-2.4.0/googleway/man/google_places.Rd                                |   18 
 googleway-2.4.0/googleway/man/google_reverse_geocode.Rd                       |    9 
 googleway-2.4.0/googleway/man/google_snapToRoads.Rd                           |    8 
 googleway-2.4.0/googleway/man/google_speedLimits.Rd                           |    9 
 googleway-2.4.0/googleway/man/google_streetview.Rd                            |    6 
 googleway-2.4.0/googleway/man/google_timezone.Rd                              |    8 
 googleway-2.4.0/googleway/man/map_styles.Rd                                   |    3 
 googleway-2.4.0/googleway/man/melbourne.Rd                                    |    1 
 googleway-2.4.0/googleway/man/pipe.Rd                                         |    1 
 googleway-2.4.0/googleway/man/set_key.Rd                                      |only
 googleway-2.4.0/googleway/man/tram_route.Rd                                   |    1 
 googleway-2.4.0/googleway/man/tram_stops.Rd                                   |    1 
 googleway-2.4.0/googleway/man/update_circles.Rd                               |   63 
 googleway-2.4.0/googleway/man/update_geojson.Rd                               |only
 googleway-2.4.0/googleway/man/update_heatmap.Rd                               |   67 
 googleway-2.4.0/googleway/man/update_polygons.Rd                              |   63 
 googleway-2.4.0/googleway/man/update_polylines.Rd                             |   55 
 googleway-2.4.0/googleway/man/update_rectangles.Rd                            |   56 
 googleway-2.4.0/googleway/man/update_style.Rd                                 |    3 
 googleway-2.4.0/googleway/src/RcppExports.cpp                                 |   23 
 googleway-2.4.0/googleway/tests/manual_tests.R                                |only
 googleway-2.4.0/googleway/tests/testthat/test-colours.R                       |only
 googleway-2.4.0/googleway/tests/testthat/test-decode_pl.R                     |   13 
 googleway-2.4.0/googleway/tests/testthat/test-google_directions.R             |   55 
 googleway-2.4.0/googleway/tests/testthat/test-google_distances.R              |   20 
 googleway-2.4.0/googleway/tests/testthat/test-google_elevation.R              |   44 
 googleway-2.4.0/googleway/tests/testthat/test-google_geocode.R                |    4 
 googleway-2.4.0/googleway/tests/testthat/test-google_keys.R                   |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map.R                    |   41 
 googleway-2.4.0/googleway/tests/testthat/test-google_map_layer_circles.R      |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map_layer_fusion.R       |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map_layer_geojson.R      |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map_layer_kml.R          |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map_layer_methods.R      |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map_layer_parameters.R   |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map_layer_polygons.R     |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map_layer_polyline.R     |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map_layer_rectangles.R   |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map_layer_sf.R           |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map_layers.R             |  211 -
 googleway-2.4.0/googleway/tests/testthat/test-google_map_shape_constructors.R |only
 googleway-2.4.0/googleway/tests/testthat/test-google_map_urls.R               |only
 googleway-2.4.0/googleway/tests/testthat/test-google_place_autocomplete.R     |   38 
 googleway-2.4.0/googleway/tests/testthat/test-google_place_details.R          |    2 
 googleway-2.4.0/googleway/tests/testthat/test-google_places.R                 |    8 
 googleway-2.4.0/googleway/tests/testthat/test-google_reverse_geocode.R        |    2 
 googleway-2.4.0/googleway/tests/testthat/test-google_streetview.R             |    7 
 googleway-2.4.0/googleway/tests/testthat/test-google_timezone.R               |    4 
 googleway-2.4.0/googleway/tests/testthat/test-google_utilities.R              |   37 
 googleway-2.4.0/googleway/tests/testthat/test-legend.R                        |only
 googleway-2.4.0/googleway/tests/testthat/test-parameter_checks.R              |  270 +
 googleway-2.4.0/googleway/tests/testthat/test-results_access.R                |only
 googleway-2.4.0/googleway/tests/testthat/test-results_access_api.R            |only
 googleway-2.4.0/googleway/vignettes/googleway-vignette.Rmd                    |  717 +++
 googleway-2.4.0/googleway/vignettes/img/fusion_layer.png                      |only
 googleway-2.4.0/googleway/vignettes/img/fusion_layer_style.png                |only
 googleway-2.4.0/googleway/vignettes/img/geojson.png                           |only
 googleway-2.4.0/googleway/vignettes/img/google_map.png                        |binary
 googleway-2.4.0/googleway/vignettes/img/heatmap.png                           |binary
 googleway-2.4.0/googleway/vignettes/img/heatmap_colour.png                    |binary
 googleway-2.4.0/googleway/vignettes/img/kml.png                               |only
 googleway-2.4.0/googleway/vignettes/img/marker_info.png                       |binary
 googleway-2.4.0/googleway/vignettes/img/melbourne_to_sydney_add_polylines.png |binary
 googleway-2.4.0/googleway/vignettes/img/overlay.png                           |only
 googleway-2.4.0/googleway/vignettes/img/polygon_custom_legend.png             |only
 googleway-2.4.0/googleway/vignettes/img/polygon_legend.png                    |only
 googleway-2.4.0/googleway/vignettes/img/polygon_multiple_colours.png          |only
 googleway-2.4.0/googleway/vignettes/img/polygon_palette.png                   |only
 googleway-2.4.0/googleway/vignettes/img/polygon_single_colour.png             |only
 googleway-2.4.0/googleway/vignettes/img/polygons.png                          |only
 googleway-2.4.0/googleway/vignettes/img/sf_marker_lines.png                   |only
 googleway-2.4.0/googleway/vignettes/img/sf_north_carolina.png                 |only
 195 files changed, 5086 insertions(+), 5081 deletions(-)

More information about googleway at CRAN
Permanent link

Package gifti updated to version 0.7.5 with previous version 0.7.4 dated 2017-07-26

Title: Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information
Description: Functions to read in the geometry format under the 'Neuroimaging' 'Informatics' Technology Initiative ('NIfTI'), called 'GIFTI' <https://www.nitrc.org/projects/gifti/>. These files contain surfaces of brain imaging data.
Author: John Muschelli
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between gifti versions 0.7.4 dated 2017-07-26 and 0.7.5 dated 2018-02-01

 DESCRIPTION                       |    6 
 MD5                               |   20 +-
 NEWS.md                           |    9 
 R/create_data_matrix.R            |    3 
 R/surf_triangles.R                |    2 
 build/vignette.rds                |binary
 inst/doc/Reading_GIFTI_Files.Rmd  |    6 
 inst/doc/Reading_GIFTI_Files.html |  362 ++++++++++++++++++++++++++++++--------
 man/create_data_matrix.Rd         |    4 
 man/surf_triangles.Rd             |    2 
 vignettes/Reading_GIFTI_Files.Rmd |    6 
 11 files changed, 319 insertions(+), 101 deletions(-)

More information about gifti at CRAN
Permanent link

Package cellWise updated to version 2.0.7 with previous version 1.0.0 dated 2016-12-06

Title: Analyzing Data with Cellwise Outliers
Description: Tools for detecting cellwise outliers and robust methods to analyze data which may contain them.
Author: Jakob Raymaekers [aut, cre], Peter Rousseeuw [aut], Wannes Van den Bossche [aut]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>

Diff between cellWise versions 1.0.0 dated 2016-12-06 and 2.0.7 dated 2018-02-01

 cellWise-1.0.0/cellWise/R/DDC_code.R                |only
 cellWise-2.0.7/cellWise/DESCRIPTION                 |   21 
 cellWise-2.0.7/cellWise/MD5                         |   68 +-
 cellWise-2.0.7/cellWise/NAMESPACE                   |    9 
 cellWise-2.0.7/cellWise/R/DDC.R                     |only
 cellWise-2.0.7/cellWise/R/RcppExports.R             |only
 cellWise-2.0.7/cellWise/R/Wrap.R                    |only
 cellWise-2.0.7/cellWise/R/cellMap.R                 |only
 cellWise-2.0.7/cellWise/R/checkDataSet.R            |only
 cellWise-2.0.7/cellWise/R/estLocScale.R             |only
 cellWise-2.0.7/cellWise/build/vignette.rds          |binary
 cellWise-2.0.7/cellWise/data/datalist               |only
 cellWise-2.0.7/cellWise/data/dog_walker.rdata       |only
 cellWise-2.0.7/cellWise/inst/doc/DDC_examples.R     |   41 -
 cellWise-2.0.7/cellWise/inst/doc/DDC_examples.Rmd   |   41 -
 cellWise-2.0.7/cellWise/inst/doc/DDC_examples.html  |  655 ++++++++++++--------
 cellWise-2.0.7/cellWise/inst/doc/Wrap_examples.R    |only
 cellWise-2.0.7/cellWise/inst/doc/Wrap_examples.Rmd  |only
 cellWise-2.0.7/cellWise/inst/doc/Wrap_examples.html |only
 cellWise-2.0.7/cellWise/man/DetectDeviatingCells.Rd |   20 
 cellWise-2.0.7/cellWise/man/cellMap.Rd              |   12 
 cellWise-2.0.7/cellWise/man/checkDataSet.Rd         |    8 
 cellWise-2.0.7/cellWise/man/dog_walker.Rd           |only
 cellWise-2.0.7/cellWise/man/estLocScale.Rd          |only
 cellWise-2.0.7/cellWise/man/wrap.Rd                 |only
 cellWise-2.0.7/cellWise/src                         |only
 cellWise-2.0.7/cellWise/vignettes/DDC_examples.Rmd  |   41 -
 cellWise-2.0.7/cellWise/vignettes/Wrap_examples.Rmd |only
 28 files changed, 614 insertions(+), 302 deletions(-)

More information about cellWise at CRAN
Permanent link

Package asymmetry updated to version 1.2.5 with previous version 1.2.4 dated 2017-10-27

Title: Multidimensional Scaling of Asymmetric Data
Description: Multidimensional scaling models and methods for the visualization for asymmetric data. A matrix is asymmetric if the number of rows equals the number of columns, and these rows and columns refer to the same set of objects. An example is a student migration table, where the rows correspond to the countries of origin of the students and the columns to the destination countries. This package provides the slide-vector model, a scaling model with unique dimensions and the asymscal model for asymmetric multidimensional scaling. Furthermore, a heat map for skew-symmetric data, and the decomposition of asymmetry are provided for the analysis of asymmetric tables.
Author: Berrie Zielman
Maintainer: Berrie Zielman <berrie.zielman@gmail.com>

Diff between asymmetry versions 1.2.4 dated 2017-10-27 and 1.2.5 dated 2018-02-01

 DESCRIPTION                 |   12 ++++++------
 MD5                         |   35 ++++++++++++++++++++---------------
 NAMESPACE                   |    1 +
 R/mdsunique.R               |   10 ++++++++--
 R/plot.skewsymmetry.R       |    8 +++++++-
 R/print.mdsunique.R         |    2 +-
 R/skewsymmetry.R            |    2 ++
 R/summary.mdsunique.R       |only
 build/partial.rdb           |binary
 build/vignette.rds          |binary
 inst/doc/asymmetricmds.R    |only
 inst/doc/asymmetricmds.Rmd  |only
 inst/doc/asymmetricmds.html |only
 inst/doc/asymmetry.Rmd      |    2 +-
 inst/doc/asymmetry.html     |    8 ++++----
 man/asymscal.Rd             |    5 ++---
 man/mdsunique.Rd            |    6 ++++--
 man/slidevector.Rd          |   11 +++++------
 man/summary.mdsunique.Rd    |only
 man/summary.slidevector.Rd  |    2 +-
 vignettes/asymmetry.Rmd     |    2 +-
 21 files changed, 63 insertions(+), 43 deletions(-)

More information about asymmetry at CRAN
Permanent link

Package xmrr updated to version 1.0.1 with previous version 1.0.0 dated 2017-12-15

Title: Generate XMR Control Chart Data from Time-Series Data
Description: XMRs combine X-Bar control charts and Moving Range control charts. These functions also will recalculate the reference lines when significant change has occurred.
Author: Alex Zanidean [aut, cre]
Maintainer: Alex Zanidean <AZanidean@mhc.ab.ca>

Diff between xmrr versions 1.0.0 dated 2017-12-15 and 1.0.1 dated 2018-02-01

 DESCRIPTION                                       |   13 
 LICENSE                                           |  825 ++++------------------
 MD5                                               |   27 
 R/xmR.R                                           |   99 +-
 R/xmR_chart.R                                     |   14 
 README.md                                         |only
 build                                             |only
 inst                                              |only
 man/xmr.Rd                                        |    4 
 man/xmr_chart.Rd                                  |    6 
 tests/testthat/test-xmr_recalc_lowerlongrun.R     |    6 
 tests/testthat/test-xmr_recalc_shortruns.R        |    8 
 tests/testthat/test-xmr_recalc_shortruns_4.R      |    5 
 tests/testthat/test-xmr_recalc_upperlongrun.R     |    5 
 tests/testthat/test-xmr_single_longrunrunvector.R |only
 vignettes                                         |only
 16 files changed, 284 insertions(+), 728 deletions(-)

More information about xmrr at CRAN
Permanent link

Package neurohcp updated to version 0.7.3 with previous version 0.6 dated 2017-05-14

Title: Human 'Connectome' Project Interface
Description: Downloads and reads data from Human 'Connectome' Project <https://db.humanconnectome.org> using Amazon Web Services ('AWS') 'S3' buckets.
Author: John Muschelli [aut, cre], Adi Gherman [ctb]
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between neurohcp versions 0.6 dated 2017-05-14 and 0.7.3 dated 2018-02-01

 DESCRIPTION                     |   31 ++-
 MD5                             |   53 +++--
 NAMESPACE                       |    8 
 NEWS.md                         |only
 R/download_hcp_dir.R            |   17 +
 R/download_hcp_file.R           |    9 +
 R/get_hcp_file.R                |   18 ++
 R/hcp_ids.R                     |    5 
 R/hcp_list_files.R              |   86 +++++++++
 R/hcp_scanning_info.R           |    7 
 R/make_aws_call.R               |    2 
 R/set_aws_api_key.R             |    2 
 README.md                       |    1 
 build/vignette.rds              |binary
 data/hcp_1200_scanning_info.rda |only
 data/hcp_900_scanning_info.rda  |binary
 data/hcp_scanning_info.rda      |binary
 inst/doc/hcp.R                  |    4 
 inst/doc/hcp.Rmd                |    4 
 inst/doc/hcp.html               |  359 +++++++++++++++++++++++++++++++---------
 man/download_hcp_dir.Rd         |    7 
 man/download_hcp_file.Rd        |    3 
 man/get_hcp_file.Rd             |    6 
 man/hcp_1200_scanning_info.Rd   |only
 man/hcp_ids.Rd                  |    2 
 man/hcp_list_files.Rd           |   26 ++
 man/make_aws_call.Rd            |    2 
 man/set_aws_api_key.Rd          |    2 
 vignettes/hcp.Rmd               |    4 
 29 files changed, 525 insertions(+), 133 deletions(-)

More information about neurohcp at CRAN
Permanent link

Package CLME updated to version 2.0-9 with previous version 2.0-8 dated 2017-12-08

Title: Constrained Inference for Linear Mixed Effects Models
Description: Estimation and inference for linear models where some or all of the fixed-effects coefficients are subject to order restrictions. This package uses the robust residual bootstrap methodology for inference, and can handle some structure in the residual variance matrix.
Author: Casey M. Jelsema, Shyamal D. Peddada
Maintainer: Casey M. Jelsema <jelsema.casey@gmail.com>

Diff between CLME versions 2.0-8 dated 2017-12-08 and 2.0-9 dated 2018-02-01

 DESCRIPTION       |   10 ++---
 MD5               |   14 +++----
 NAMESPACE         |    6 ---
 NEWS              |    4 +-
 R/00Package.r     |    4 +-
 R/summary_clme.r  |   96 +++++++++++++++++++++++++++---------------------------
 R/utilities.r     |   17 ++++++---
 man/sigma.clme.Rd |    1 
 8 files changed, 78 insertions(+), 74 deletions(-)

More information about CLME at CRAN
Permanent link

Package childhoodmortality updated to version 0.2.0 with previous version 0.1.0 dated 2017-12-14

Title: Calculating Childhood Mortality Rates
Description: Calculates childhood (neonatal, postneonatal, infant, child, and under-five) mortality rates using Demographic and Health Survey (DHS) microdata. The 'childhoodmortality' package was developed in accordance to the methodology outlined in the "DHS Guide to Statistics" (Rutstein 2006, <http://dhsprogram.com/pubs/pdf/DHSG1/Guide_to_DHS_Statistics_29Oct2012_DHSG1.pdf>) Specifically, the package uses a synthetic cohort life table approach, combining mortality probabilities for age segments with actual cohort mortality experience into more common age segments. Standard errors for mortality estimates are computed using the jackknife repeated replication method outlined in the "Estimates of Sampling Errors" appendix of DHS Final Reports (DHS 2004, <http://dhsprogram.com/pubs/pdf/FR175/19AppendixB.pdf>). This methodology controls for sample design.
Author: Casey Breen
Maintainer: Casey Breen <cbreen@umn.edu>

Diff between childhoodmortality versions 0.1.0 dated 2017-12-14 and 0.2.0 dated 2018-02-01

 DESCRIPTION               |    8 +--
 MD5                       |   15 +++--
 R/childhoodmortality.R    |   22 ++++----
 R/utilities.R             |   20 +++----
 README.md                 |  122 +++++++++++++++++++++++++++++++++++++++++++++-
 build                     |only
 inst                      |only
 man/childhoodmortality.Rd |    2 
 vignettes                 |only
 9 files changed, 160 insertions(+), 29 deletions(-)

More information about childhoodmortality at CRAN
Permanent link

Package kirby21.fmri updated to version 1.6.0 with previous version 1.5.1 dated 2017-03-02

Title: Example Functional Imaging Data from the Multi-Modal MRI 'Reproducibility' Resource
Description: Functional magnetic resonance imaging ('fMRI') data from the 'Kirby21' 'reproducibility' study <doi:10.1016/j.neuroimage.2010.11.047>.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between kirby21.fmri versions 1.5.1 dated 2017-03-02 and 1.6.0 dated 2018-02-01

 DESCRIPTION               |   20 +++++++++++---------
 MD5                       |    7 ++++---
 NEWS.md                   |only
 R/get_fmri_filenames.R    |    2 +-
 man/get_fmri_filenames.Rd |    2 +-
 5 files changed, 17 insertions(+), 14 deletions(-)

More information about kirby21.fmri at CRAN
Permanent link

Package tmle updated to version 1.3.0 with previous version 1.2.0-5 dated 2017-01-07

Title: Targeted Maximum Likelihood Estimation
Description: Targeted maximum likelihood estimation of point treatment effects (Targeted Maximum Likelihood Learning, The International Journal of biostatistics, 2(1), 2006. This version automatically estimates the additive treatment effect among the treated (ATT) and among the controls (ATC). The tmle() function calculates the adjusted marginal difference in mean outcome associated with a binary point treatment, for continuous or binary outcomes. Relative risk and odds ratio estimates are also reported for binary outcomes. Missingness in the outcome is allowed, but not in treatment assignment or baseline covariate values. The population mean is calculated when there is missingness, and no variation in the treatment assignment. The tmleMSM() function estimates the parameters of a marginal structural model for a binary point treatment effect. Effect estimation stratified by a binary mediating variable is also available. An ID argument can be used to identify repeated measures. Default settings call 'SuperLearner' to estimate the Q and g portions of the likelihood, unless values or a user-supplied regression function are passed in as arguments.
Author: Susan Gruber [aut, cre], Mark van der Laan [aut]
Maintainer: Susan Gruber <sgruber@cal.berkeley.edu>

Diff between tmle versions 1.2.0-5 dated 2017-01-07 and 1.3.0 dated 2018-02-01

 DESCRIPTION            |   12 ++--
 MD5                    |   29 +++++------
 NEWS                   |    4 +
 R/tmle.R               |  125 +++++++++++++++++++++++++++++++++++++++++++++++--
 R/zzz.R                |    2 
 man/calcParameters.Rd  |    8 +--
 man/calcSigma.Rd       |    2 
 man/estimateG.Rd       |    2 
 man/estimateQ.Rd       |    2 
 man/oneStepATT.Rd      |only
 man/summary.tmle.Rd    |    2 
 man/summary.tmleMSM.Rd |    2 
 man/tmle-package.Rd    |   12 ++--
 man/tmle.Rd            |    6 +-
 man/tmleMSM.Rd         |    2 
 man/tmleNews.Rd        |    4 -
 16 files changed, 169 insertions(+), 45 deletions(-)

More information about tmle at CRAN
Permanent link

Package SpaDES updated to version 2.0.1 with previous version 2.0.0 dated 2017-09-05

Title: Develop and Run Spatially Explicit Discrete Event Simulation Models
Description: Metapackage for implementing a variety of event-based models, with a focus on spatially explicit models. These include raster-based, event-based, and agent-based models. The core simulation components (provided by 'SpaDES.core') are built upon a discrete event simulation (DES; see Matloff (2011) ch 7.8.3 <https://nostarch.com/artofr.htm>) framework that facilitates modularity, and easily enables the user to include additional functionality by running user-built simulation modules (see also 'SpaDES.tools'). Included are numerous tools to visualize rasters and other maps (via 'quickPlot'), and caching methods for reproducible simulations (via 'reproducible'). Additional functionality is provided by the 'SpaDES.addins' and 'SpaDES.shiny' packages.
Author: Alex M Chubaty [aut, cre], Eliot J B McIntire [aut], Yong Luo [ctb], Steve Cumming [ctb], Her Majesty the Queen in Right of Canada, as represented by the Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alexander.chubaty@canada.ca>

Diff between SpaDES versions 2.0.0 dated 2017-09-05 and 2.0.1 dated 2018-02-01

 DESCRIPTION             |   18 -
 MD5                     |   18 -
 NAMESPACE               |    5 
 NEWS.md                 |    5 
 R/spades-package.R      |   10 
 R/zzz.R                 |    1 
 README.md               |   26 +-
 build/vignette.rds      |binary
 inst/doc/iii-cache.html |  513 +++++++++++++++++++++++++++++++++---------------
 man/SpaDES-package.Rd   |    3 
 10 files changed, 417 insertions(+), 182 deletions(-)

More information about SpaDES at CRAN
Permanent link

Package SensMap updated to version 0.6 with previous version 0.5 dated 2018-01-29

Title: Sensory and Consumer Data Mapping
Description: External preference mapping technique is commonly used in sensory analysis field to connect consumer rating data that contains liking scores to sensory data that incorporates sensory attributes' evaluations of the perceived products Danzart(1998) (<doi:10.1006/fstl.1998.0373>). SensMap package provides the mapping visualization from several features : options in dimension reduction methods and prediction models ranging from linear to non linear regressions. A smoothed version of the map performed using LOESS algorithm is available. A selection process of map stability is provided. A 'shiny' application is included. It presents an easy GUI for the implemented functions as well as a comparative tool of fit models using several criteria. Basic analysis such as characterization of products, panelists and sessions likewise consumer segmentation are also made available.
Author: Ibtihel Rebhi [aut, cre], Rihab Boubakri [ctb], Dhafer Malouche [ctb]
Maintainer: Ibtihel Rebhi <ibtihel.rebhi@enit.utm.tn>

Diff between SensMap versions 0.5 dated 2018-01-29 and 0.6 dated 2018-02-01

 DESCRIPTION         |   12 
 MD5                 |    4 
 inst/SensMapUI/ui.R |  691 +++++++++++++++++++++++++---------------------------
 3 files changed, 353 insertions(+), 354 deletions(-)

More information about SensMap at CRAN
Permanent link

Package RVowpalWabbit updated to version 0.0.12 with previous version 0.0.11 dated 2018-01-28

Title: R Interface to the Vowpal Wabbit
Description: The 'Vowpal Wabbit' project is a fast out-of-core learning system sponsored by Microsoft Research (having started at Yahoo! Research) and written by John Langford along with a number of contributors. This R package does not include the distributed computing implementation of the cluster/ directory of the upstream sources. Use of the software as a network service is also not directly supported as the aim is a simpler direct call from R for validation and comparison. Note that this package contains an embedded older version of 'Vowpal Wabbit'. The package 'rvw' at the GitHub repo <https://github.com/eddelbuettel/rvw> can provide an alternative using an external 'Vowpal Wabbit' library installation.
Author: Dirk Eddelbuettel <edd@debian.org>
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RVowpalWabbit versions 0.0.11 dated 2018-01-28 and 0.0.12 dated 2018-02-01

 ChangeLog                |   17 ++++++++++++++++-
 DESCRIPTION              |    8 ++++----
 MD5                      |   18 +++++++++---------
 demo/vw.R                |   10 +++++-----
 man/vw.Rd                |    2 +-
 src/active_interactor.cc |    8 ++++----
 src/bfgs.cc              |   10 +++++-----
 tests/test1.r            |    2 +-
 tests/test5.r            |    2 +-
 tests/test7.r            |    2 +-
 10 files changed, 47 insertions(+), 32 deletions(-)

More information about RVowpalWabbit at CRAN
Permanent link

Package opticut updated to version 0.1-2 with previous version 0.1-1 dated 2018-01-31

Title: Likelihood Based Optimal Partitioning and Indicator Species Analysis
Description: Likelihood based optimal partitioning and indicator species analysis. Finding the best binary partition for each species based on model selection, with the possibility to take into account modifying/confounding variables as described in Kemencei et al. (2014) <doi:10.1556/ComEc.15.2014.2.6>. The package implements binary and multi-level response models, various measures of uncertainty, Lorenz-curve based thresholding, with native support for parallel computations.
Author: Peter Solymos [cre, aut], Ermias T. Azeria [ctb]
Maintainer: Peter Solymos <solymos@ualberta.ca>

Diff between opticut versions 0.1-1 dated 2018-01-31 and 0.1-2 dated 2018-02-01

 DESCRIPTION       |    8 ++++----
 MD5               |   21 +++++++++++----------
 R/opticut1dot.R   |    6 +++++-
 R/zzz.R           |    3 ++-
 build/partial.rdb |binary
 inst              |only
 man/birdrec.Rd    |    2 +-
 man/multicut.Rd   |    3 +++
 man/occolors.Rd   |    2 +-
 man/ocoptions.Rd  |   11 +++++++++++
 man/opticut.Rd    |    3 +++
 man/optilevels.Rd |    3 +++
 12 files changed, 44 insertions(+), 18 deletions(-)

More information about opticut at CRAN
Permanent link

Package modmarg updated to version 0.9.2 with previous version 0.9.0 dated 2017-10-29

Title: Calculating Marginal Effects and Levels with Errors
Description: Calculate predicted levels and marginal effects, using the delta method to calculate standard errors. This is an R-based version of the 'margins' command from Stata.
Author: Alex Gold [aut], Nat Olin [aut], Annie Wang [aut, cre]
Maintainer: Annie Wang <anniejw6@gmail.com>

Diff between modmarg versions 0.9.0 dated 2017-10-29 and 0.9.2 dated 2018-02-01

 DESCRIPTION                |    6 +++---
 MD5                        |   16 ++++++++--------
 NEWS.md                    |    4 ++++
 R/glm_marg.R               |    2 +-
 R/marg.R                   |   14 +++++++++-----
 README.md                  |    2 +-
 inst/doc/delta-method.html |    4 ++--
 inst/doc/usage.html        |    4 ++--
 tests/testthat/test_glm.R  |   11 ++++++++++-
 9 files changed, 40 insertions(+), 23 deletions(-)

More information about modmarg at CRAN
Permanent link

Package mlmm updated to version 1.5.0 with previous version 1.0 dated 2017-11-02

Title: Multilevel Model for Multivariate Responses with Missing Values
Description: To conduct Bayesian inference regression for responses with multilevel explanatory variables and missing values; It uses function from 'Stan', a software to implement posterior sampling using Hamiltonian MC and its variation Non-U-Turn algorithms. It implements the posterior sampling of regression coefficients from the multilevel regression models. The package has two main functions to handle not-missing-at-random missing responses and left- censored with not-missing-at random responses. The purpose is to provide a similar format as the other R regression functions but using 'Stan' models.
Author: Irene SL Zeng [aut, cre], Thomas Lumley [ctb]
Maintainer: Irene SL Zeng <i.zeng@auckland.ac.nz>

Diff between mlmm versions 1.0 dated 2017-11-02 and 1.5.0 dated 2018-02-01

 mlmm-1.0/mlmm/inst/chunks/mlmc_i32.rds |only
 mlmm-1.0/mlmm/inst/chunks/mlmc_i64.rds |only
 mlmm-1.5.0/mlmm/DESCRIPTION            |   24 
 mlmm-1.5.0/mlmm/MD5                    |   32 
 mlmm-1.5.0/mlmm/NAMESPACE              |   21 
 mlmm-1.5.0/mlmm/R/mlmc.R               |   29 
 mlmm-1.5.0/mlmm/R/mlmm-internal.R      |  252 +-
 mlmm-1.5.0/mlmm/R/mlmm.R               |   17 
 mlmm-1.5.0/mlmm/R/readstancode.R       |  550 +++---
 mlmm-1.5.0/mlmm/R/setinitialvalues.R   |   50 
 mlmm-1.5.0/mlmm/R/stanmodels.R         |   80 
 mlmm-1.5.0/mlmm/R/zzz.R                |    8 
 mlmm-1.5.0/mlmm/exec/mlmc_code.stan    |  270 +--
 mlmm-1.5.0/mlmm/exec/mmlm_code.stan    |  258 +--
 mlmm-1.5.0/mlmm/man/mlmc.Rd            |   20 
 mlmm-1.5.0/mlmm/man/mlmm.Rd            |   12 
 mlmm-1.5.0/mlmm/src/include/models.hpp | 2802 +++++++++++++++++----------------
 mlmm-1.5.0/mlmm/tools/make_cpp.R       |   98 -
 18 files changed, 2344 insertions(+), 2179 deletions(-)

More information about mlmm at CRAN
Permanent link

Package lqr updated to version 1.7 with previous version 1.5 dated 2016-05-19

Title: Robust Linear Quantile Regression
Description: It fits a robust linear quantile regression model using a new family of zero-quantile distributions for the error term as in Galarza et.al.(2017) <doi:10.1002/sta4.140>. This family of distribution includes skewed versions of the Normal, Student's t, Laplace, Slash and Contaminated Normal distribution. It also performs logistic quantile regression for bounded responses as shown in Bottai et.al.(2009) <doi:10.1002/sim.3781>. It provides estimates and full inference. It also provides envelopes plots for assessing the fit and confidences bands when several quantiles are provided simultaneously.
Author: Christian E. Galarza, Luis Benites, Victor H. Lachos
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>

Diff between lqr versions 1.5 dated 2016-05-19 and 1.7 dated 2018-02-01

 DESCRIPTION           |   10 +++++-----
 MD5                   |   20 ++++++++++----------
 R/EMonly.R            |   13 +++++++------
 R/bestlqr.R           |   20 +++++++++++++-------
 man/SKD.Rd            |    2 +-
 man/best.lqr.Rd       |    3 +--
 man/dist.Truncated.Rd |    3 +--
 man/logbestlqr.Rd     |   13 ++++++-------
 man/loglqr.Rd         |   14 +++++++-------
 man/lqr-package.Rd    |    4 ++--
 man/resistence.Rd     |    3 +--
 11 files changed, 54 insertions(+), 51 deletions(-)

More information about lqr at CRAN
Permanent link

Package fastLink updated to version 0.3.1 with previous version 0.3.0 dated 2018-01-26

Title: Fast Probabilistic Record Linkage with Missing Data
Description: Implements a Fellegi-Sunter probabilistic record linkage model that allows for missing data and the inclusion of auxiliary information. This includes functionalities to conduct a merge of two datasets under the Fellegi-Sunter model using the Expectation-Maximization algorithm. In addition, tools for preparing, adjusting, and summarizing data merges are included. The package implements methods described in Enamorado, Fifield, and Imai (2017) ''Using a Probabilistic Model to Assist Merging of Large-scale Administrative Records'', available at <http://imai.princeton.edu/research/linkage.html>.
Author: Ted Enamorado [aut, cre], Ben Fifield [aut], Kosuke Imai [aut]
Maintainer: Ted Enamorado <fastlinkr@gmail.com>

Diff between fastLink versions 0.3.0 dated 2018-01-26 and 0.3.1 dated 2018-02-01

 DESCRIPTION                    |    8 ++++----
 MD5                            |   18 +++++++++---------
 R/confusion.R                  |    4 ++--
 R/fastLink.R                   |   12 ++++++++++--
 data/countyname_to_fips.RData  |binary
 data/cps_statemovers.RData     |binary
 data/irs_countymigration.RData |binary
 data/irs_statemigration.RData  |binary
 data/samplematch.RData         |binary
 data/statecode_to_fips.RData   |binary
 10 files changed, 25 insertions(+), 17 deletions(-)

More information about fastLink at CRAN
Permanent link

Package canvasXpress updated to version 1.18.3 with previous version 1.18.2 dated 2018-01-18

Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework in R. CanvasXpress is a standalone JavaScript library for reproducible research with complete tracking of data and end-user modifications stored in a single PNG image that can be played back. See <http://canvasxpress.org> for more information.
Author: Isaac Neuhaus [aut, cre], Connie Brett [ctb]
Maintainer: Connie Brett <connie@aggregate-genius.com>

Diff between canvasXpress versions 1.18.2 dated 2018-01-18 and 1.18.3 dated 2018-02-01

 DESCRIPTION                                           |    6 
 MD5                                                   |   28 -
 NEWS.md                                               |    2 
 README.md                                             |    4 
 inst/doc/additional_examples.html                     |    4 
 inst/doc/getting_started.html                         |    4 
 inst/extdata/cX-networkbasic-edges.txt                |   14 
 inst/extdata/cX-networkbasic-nodes.txt                |   12 
 inst/extdata/cX-wpapoptosis-edges.txt                 |  134 ++++-----
 inst/extdata/cX-wpapoptosis-nodes.txt                 |   32 +-
 inst/htmlwidgets/canvasXpress.js                      |    4 
 inst/htmlwidgets/lib/canvasXpress/canvasXpress.css    |  256 ++----------------
 inst/htmlwidgets/lib/canvasXpress/canvasXpress.min.js |    6 
 tests/cX-function.R                                   |   17 -
 tests/cX-test-setup.R                                 |    3 
 15 files changed, 176 insertions(+), 350 deletions(-)

More information about canvasXpress at CRAN
Permanent link

Package awsMethods updated to version 1.1-0 with previous version 1.0-4 dated 2016-09-14

Title: Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi'
Description: Defines the method extract and provides 'openMP' support as needed in several packages.
Author: Joerg Polzehl [aut, cre], Felix Anker [ctb]
Maintainer: Joerg Polzehl <joerg.polzehl@wias-berlin.de>

Diff between awsMethods versions 1.0-4 dated 2016-09-14 and 1.1-0 dated 2018-02-01

 awsMethods-1.0-4/awsMethods/configure       |only
 awsMethods-1.0-4/awsMethods/src/Makevars.in |only
 awsMethods-1.0-4/awsMethods/src/cleanup     |only
 awsMethods-1.1-0/awsMethods/DESCRIPTION     |   12 ++++++------
 awsMethods-1.1-0/awsMethods/MD5             |   13 +++++++------
 awsMethods-1.1-0/awsMethods/NAMESPACE       |    2 +-
 awsMethods-1.1-0/awsMethods/R/onAttach.r    |only
 awsMethods-1.1-0/awsMethods/R/utilities.r   |    6 +++---
 awsMethods-1.1-0/awsMethods/cleanup         |only
 awsMethods-1.1-0/awsMethods/src/Makevars    |only
 awsMethods-1.1-0/awsMethods/src/init.c      |only
 11 files changed, 17 insertions(+), 16 deletions(-)

More information about awsMethods at CRAN
Permanent link

Package ald updated to version 1.2 with previous version 1.1 dated 2016-06-06

Title: The Asymmetric Laplace Distribution
Description: It provides the density, distribution function, quantile function, random number generator, likelihood function, moments and Maximum Likelihood estimators for a given sample, all this for the three parameter Asymmetric Laplace Distribution defined in Koenker and Machado (1999). This is a special case of the skewed family of distributions available in Galarza et.al. (2017) <doi:10.1002/sta4.140> useful for quantile regression.
Author: Christian E. Galarza <cgalarza88@gmail.com> and Victor H. Lachos <hlachos@ime.unicamp.br>
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>

Diff between ald versions 1.1 dated 2016-06-06 and 1.2 dated 2018-02-01

 DESCRIPTION |   10 +++++-----
 MD5         |    4 ++--
 man/ALD.Rd  |    2 +-
 3 files changed, 8 insertions(+), 8 deletions(-)

More information about ald at CRAN
Permanent link

Package TraMineRextras updated to version 0.4.2 with previous version 0.4.1 dated 2017-08-16

Title: TraMineR Extension
Description: Collection of ancillary functions and utilities to be used in conjunction with the 'TraMineR' package for sequence data exploration. Most of the functions are in test phase, lack systematic consistency check of the arguments and are subject to changes. Once fully checked, some of the functions of this collection could be included in a next release of 'TraMineR'.
Author: Gilbert Ritschard [aut, cre, ths, cph], Matthias Studer [aut], Reto Buergin [aut], Alexis Gabadinho [ctb], Pierre-Alexandre Fonta [ctb], Nicolas Muller [ctb], Patrick Rousset [ctb]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>

Diff between TraMineRextras versions 0.4.1 dated 2017-08-16 and 0.4.2 dated 2018-02-01

 DESCRIPTION                   |   12 +++++----
 MD5                           |   51 +++++++++++++++++++++++++-----------------
 NAMESPACE                     |   12 +++++++++
 R/dissvar-grp.R               |    2 -
 R/eventLatex-gr.R             |   12 ++++-----
 R/pamward.R                   |   18 +++++++++-----
 R/plot.stslist.surv.R         |only
 R/seqplot-tentrop.R           |    3 ++
 R/seqprecarity.R              |only
 R/seqprecorr.R                |only
 R/seqprecstart.R              |only
 R/seqrep-grp.R                |   25 ++++++++++++++++----
 R/seqsplot.R                  |only
 R/seqsurv.R                   |only
 R/seqtabstocc.R               |    9 ++++---
 inst/CITATION                 |   26 ++++++++++++++++++---
 inst/NEWS                     |   30 ++++++++++++++++++++++++
 inst/NEWS.Rd                  |   49 ++++++++++++++++++++++++++++++++++++++++
 man/TraMineRextras-package.Rd |    2 -
 man/pamward.Rd                |   10 ++++----
 man/plot.emlt.Rd              |   42 ++++++++++++++++++----------------
 man/plot.stslist.surv.Rd      |only
 man/seqedplot.Rd              |    4 +--
 man/seqemlt.Rd                |   23 +++++++++---------
 man/seqentrans.Rd             |    2 -
 man/seqeordplot.Rd            |    5 ++--
 man/seqprecarity.Rd           |only
 man/seqprecstart.Rd           |only
 man/seqrep-grp.Rd             |   13 ++++++----
 man/seqsplot.Rd               |only
 man/seqsurv.Rd                |only
 man/seqtabstocc.Rd            |    4 ++-
 32 files changed, 257 insertions(+), 97 deletions(-)

More information about TraMineRextras at CRAN
Permanent link

Package d3heatmap updated to version 0.6.1.2 with previous version 0.6.1.1 dated 2016-02-23

Title: Interactive Heat Maps Using 'htmlwidgets' and 'D3.js'
Description: Create interactive heat maps that are usable from the R console, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a cell to show details, drag a rectangle to zoom, and click row/column labels to highlight.
Author: Joe Cheng [aut, cre], Tal Galili [aut], RStudio, Inc. [cph], Michael Bostock [ctb, cph] (D3.js library), Justin Palmer [ctb, cph] (d3.tip library)
Maintainer: ORPHANED

Diff between d3heatmap versions 0.6.1.1 dated 2016-02-23 and 0.6.1.2 dated 2018-02-01

 d3heatmap-0.6.1.1/d3heatmap/tests/smoketest.R      |only
 d3heatmap-0.6.1.2/d3heatmap/DESCRIPTION            |   15 +++++++++------
 d3heatmap-0.6.1.2/d3heatmap/MD5                    |    5 +++--
 d3heatmap-0.6.1.2/d3heatmap/tests/Note             |only
 d3heatmap-0.6.1.2/d3heatmap/tests/smoketest.R.duff |only
 5 files changed, 12 insertions(+), 8 deletions(-)

More information about d3heatmap at CRAN
Permanent link

Package GGMselect updated to version 0.1-12.1 with previous version 0.1-12 dated 2017-04-19

Title: Gaussian Graphs Models Selection
Description: Graph estimation in Gaussian Graphical Models. The main functions return the adjacency matrix of an undirected graph estimated from a data matrix.
Author: Annie Bouvier, Christophe Giraud, Sylvie Huet, Verzelen N.
Maintainer: ORPHANED

Diff between GGMselect versions 0.1-12 dated 2017-04-19 and 0.1-12.1 dated 2018-02-01

 DESCRIPTION               |   11 +++++++----
 MD5                       |   30 +++++++++++++++---------------
 src/Makevars              |    2 +-
 tests/bsch.Rout.save      |   10 +++++-----
 tests/penInf.Rout.save    |   16 +++++++++-------
 tests/sh9.2012.Rout.save  |   10 +++++-----
 tests/shPUR.Rout.save     |   10 +++++-----
 tests/test1Fast.Rout.save |   10 +++++-----
 tests/test1QE.Rout.save   |   10 +++++-----
 tests/test2Fast.Rout.save |   10 +++++-----
 tests/test2QE.Rout.save   |   10 +++++-----
 tests/test3Fast.Rout.save |   10 +++++-----
 tests/test3QE.Rout.save   |   10 +++++-----
 tests/test5Fast.Rout.save |   10 +++++-----
 tests/test7Fast.Rout.save |   10 +++++-----
 tests/testMyFam.Rout.save |   10 +++++-----
 16 files changed, 92 insertions(+), 87 deletions(-)

More information about GGMselect at CRAN
Permanent link

Package pubprint (with last version 0.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-05-24 0.2.1
2016-05-12 0.2
2016-01-28 0.1.1

Permanent link
Package wTO updated to version 1.4.2 with previous version 1.4.1 dated 2017-11-22

Title: Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network
Description: Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks (Nowick et al. (2009) <doi:10.1073/pnas.0911376106>) given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks.
Author: Deisy Morselli Gysi, Andre Voigt, Tiago Miranda Fragoso, Eivind Almaas and Katja Nowick.
Maintainer: Deisy Morselli Gysi <deisy@bioinf.uni-leipzig.de>

Diff between wTO versions 1.4.1 dated 2017-11-22 and 1.4.2 dated 2018-02-01

 DESCRIPTION          |    6 +++---
 MD5                  |   11 ++++++-----
 R/wTO.Complete2.R    |    2 +-
 R/wTO.Consensus.R    |    2 +-
 inst                 |only
 man/wTO.Complete.Rd  |    2 +-
 man/wTO.Consensus.Rd |    2 +-
 7 files changed, 13 insertions(+), 12 deletions(-)

More information about wTO at CRAN
Permanent link

Package FRESA.CAD updated to version 3.0.0 with previous version 2.2.1 dated 2016-09-10

Title: Feature Selection Algorithms for Computer Aided Diagnosis
Description: Contains a set of utilities for building and testing formula-based models (linear, logistic or COX) for Computer Aided Diagnosis/Prognosis applications. Utilities include data adjustment, univariate analysis, model building, model-validation, longitudinal analysis, reporting and visualization.
Author: Jose Gerardo Tamez-Pena, Antonio Martinez-Torteya and Israel Alanis
Maintainer: Jose Gerardo Tamez-Pena <jose.tamezpena@itesm.mx>

Diff between FRESA.CAD versions 2.2.1 dated 2016-09-10 and 3.0.0 dated 2018-02-01

 FRESA.CAD-2.2.1/FRESA.CAD/R/medianPredict.R                          |only
 FRESA.CAD-2.2.1/FRESA.CAD/man/medianPredict.Rd                       |only
 FRESA.CAD-3.0.0/FRESA.CAD/DESCRIPTION                                |   11 
 FRESA.CAD-3.0.0/FRESA.CAD/MD5                                        |  162 -
 FRESA.CAD-3.0.0/FRESA.CAD/NAMESPACE                                  |   53 
 FRESA.CAD-3.0.0/FRESA.CAD/NEWS                                       |   37 
 FRESA.CAD-3.0.0/FRESA.CAD/R/BSWiMS.r                                 |only
 FRESA.CAD-3.0.0/FRESA.CAD/R/EmpiricalSurvDiff.r                      |only
 FRESA.CAD-3.0.0/FRESA.CAD/R/FRESA.Model.R                            |  320 +-
 FRESA.CAD-3.0.0/FRESA.CAD/R/ForwardSelection.Model.Bin.R             |  371 +-
 FRESA.CAD-3.0.0/FRESA.CAD/R/ForwardSelection.Model.Res.R             |  165 -
 FRESA.CAD-3.0.0/FRESA.CAD/R/backVarElimination.Bin.R                 |   73 
 FRESA.CAD-3.0.0/FRESA.CAD/R/backVarElimination.Res.R                 |   64 
 FRESA.CAD-3.0.0/FRESA.CAD/R/baggedModel.R                            |  775 +++--
 FRESA.CAD-3.0.0/FRESA.CAD/R/bootstrapValidation.Bin.R                |   90 
 FRESA.CAD-3.0.0/FRESA.CAD/R/bootstrapValidation.Res.R                |   97 
 FRESA.CAD-3.0.0/FRESA.CAD/R/bootstrapVarElimination.Bin.R            |  308 +-
 FRESA.CAD-3.0.0/FRESA.CAD/R/bootstrapVarElimination.Res.R            |  331 +-
 FRESA.CAD-3.0.0/FRESA.CAD/R/crossValidationFeatureSelection.Bin.R    |  464 +--
 FRESA.CAD-3.0.0/FRESA.CAD/R/crossValidationFeatureSelection.Res.R    |  444 +--
 FRESA.CAD-3.0.0/FRESA.CAD/R/ensemblePredict.R                        |only
 FRESA.CAD-3.0.0/FRESA.CAD/R/getKNNpredictionFromFormula.R            |   34 
 FRESA.CAD-3.0.0/FRESA.CAD/R/getSignature.r                           |only
 FRESA.CAD-3.0.0/FRESA.CAD/R/getVar.Bin.R                             |  228 +
 FRESA.CAD-3.0.0/FRESA.CAD/R/getVar.Res.R                             |  154 -
 FRESA.CAD-3.0.0/FRESA.CAD/R/heatMaps.R                               |  631 ++--
 FRESA.CAD-3.0.0/FRESA.CAD/R/modelFitting.R                           |  177 -
 FRESA.CAD-3.0.0/FRESA.CAD/R/nearestneighborimpute.R                  |only
 FRESA.CAD-3.0.0/FRESA.CAD/R/plot.bootstrapValidation.Bin.R           |   87 
 FRESA.CAD-3.0.0/FRESA.CAD/R/plot.bootstrapValidation.Res.R           |   17 
 FRESA.CAD-3.0.0/FRESA.CAD/R/plotModels.ROC.R                         |  178 -
 FRESA.CAD-3.0.0/FRESA.CAD/R/predictForFresa.R                        |  134 
 FRESA.CAD-3.0.0/FRESA.CAD/R/rankInverseNormalDataFrame.R             |   13 
 FRESA.CAD-3.0.0/FRESA.CAD/R/reportEquivalentVariables.R              |  234 +
 FRESA.CAD-3.0.0/FRESA.CAD/R/residualtForFRESA.R                      |   21 
 FRESA.CAD-3.0.0/FRESA.CAD/R/signatureDistance.r                      |only
 FRESA.CAD-3.0.0/FRESA.CAD/R/summary.bootstrapValidation.R            |   98 
 FRESA.CAD-3.0.0/FRESA.CAD/R/summary.fitFRESA.R                       |only
 FRESA.CAD-3.0.0/FRESA.CAD/R/timeSerieAnalysis.R                      |   47 
 FRESA.CAD-3.0.0/FRESA.CAD/R/uniRankVar.R                             | 1432 +++++-----
 FRESA.CAD-3.0.0/FRESA.CAD/R/univariateRankVariables.R                |    4 
 FRESA.CAD-3.0.0/FRESA.CAD/R/update.uniRankVar.R                      |    2 
 FRESA.CAD-3.0.0/FRESA.CAD/R/updateModel.Bin.R                        |  314 --
 FRESA.CAD-3.0.0/FRESA.CAD/R/updateModel.Res.R                        |  309 --
 FRESA.CAD-3.0.0/FRESA.CAD/man/BSWiMS.Rd                              |only
 FRESA.CAD-3.0.0/FRESA.CAD/man/EmpiricalSurvDiff.Rd                   |only
 FRESA.CAD-3.0.0/FRESA.CAD/man/FRESA.CAD-package.Rd                   |  425 +-
 FRESA.CAD-3.0.0/FRESA.CAD/man/FRESA.Model.Rd                         |   83 
 FRESA.CAD-3.0.0/FRESA.CAD/man/ForwardModel.Bin.Rd                    |   57 
 FRESA.CAD-3.0.0/FRESA.CAD/man/ForwardModel.Res.Rd                    |   66 
 FRESA.CAD-3.0.0/FRESA.CAD/man/backVarElimination.Bin.Rd              |   58 
 FRESA.CAD-3.0.0/FRESA.CAD/man/backVarElimination.Res.Rd              |   58 
 FRESA.CAD-3.0.0/FRESA.CAD/man/baggedModel.Rd                         |   54 
 FRESA.CAD-3.0.0/FRESA.CAD/man/bootstrapValidation.Bin.Rd             |   52 
 FRESA.CAD-3.0.0/FRESA.CAD/man/bootstrapValidation.Res.Rd             |   60 
 FRESA.CAD-3.0.0/FRESA.CAD/man/bootstrapVarElimination.Bin.Rd         |   78 
 FRESA.CAD-3.0.0/FRESA.CAD/man/bootstrapVarElimination.Res.Rd         |   79 
 FRESA.CAD-3.0.0/FRESA.CAD/man/crossValidationFeatureSelection.Bin.Rd |  103 
 FRESA.CAD-3.0.0/FRESA.CAD/man/crossValidationFeatureSelection.Res.Rd |   93 
 FRESA.CAD-3.0.0/FRESA.CAD/man/ensemblePredict.Rd                     |only
 FRESA.CAD-3.0.0/FRESA.CAD/man/featureAdjustment.Rd                   |   34 
 FRESA.CAD-3.0.0/FRESA.CAD/man/getKNNpredictionFromFormula.Rd         |   51 
 FRESA.CAD-3.0.0/FRESA.CAD/man/getSignature.Rd                        |only
 FRESA.CAD-3.0.0/FRESA.CAD/man/getVar.Bin.Rd                          |   54 
 FRESA.CAD-3.0.0/FRESA.CAD/man/getVar.Res.Rd                          |   54 
 FRESA.CAD-3.0.0/FRESA.CAD/man/heatMaps.Rd                            |   88 
 FRESA.CAD-3.0.0/FRESA.CAD/man/improvedResiduals.Rd                   |   55 
 FRESA.CAD-3.0.0/FRESA.CAD/man/modelFitting.Rd                        |   54 
 FRESA.CAD-3.0.0/FRESA.CAD/man/nearestneighborimpute.Rd               |only
 FRESA.CAD-3.0.0/FRESA.CAD/man/plot.bootstrapValidation.Bin.Rd        |   56 
 FRESA.CAD-3.0.0/FRESA.CAD/man/plot.bootstrapValidation.Res.Rd        |   45 
 FRESA.CAD-3.0.0/FRESA.CAD/man/plotModels.ROC.Rd                      |   72 
 FRESA.CAD-3.0.0/FRESA.CAD/man/predictForFresa.Rd                     |   67 
 FRESA.CAD-3.0.0/FRESA.CAD/man/reportEquivalentVariables.Rd           |   84 
 FRESA.CAD-3.0.0/FRESA.CAD/man/residualForFRESA.Rd                    |   51 
 FRESA.CAD-3.0.0/FRESA.CAD/man/signatureDistance.Rd                   |only
 FRESA.CAD-3.0.0/FRESA.CAD/man/summary.bootstrapValidation.Rd         |   49 
 FRESA.CAD-3.0.0/FRESA.CAD/man/summary.fitFRESA.Rd                    |only
 FRESA.CAD-3.0.0/FRESA.CAD/man/summaryReport.Rd                       |   68 
 FRESA.CAD-3.0.0/FRESA.CAD/man/uniRankVar.Rd                          |   53 
 FRESA.CAD-3.0.0/FRESA.CAD/man/univariateRankVariables.Rd             |   56 
 FRESA.CAD-3.0.0/FRESA.CAD/man/update.uniRankVar.Rd                   |    2 
 FRESA.CAD-3.0.0/FRESA.CAD/man/updateModel.Bin.Rd                     |   66 
 FRESA.CAD-3.0.0/FRESA.CAD/man/updateModel.Res.Rd                     |   75 
 FRESA.CAD-3.0.0/FRESA.CAD/src/FRESACAD_init.cpp                      |only
 FRESA.CAD-3.0.0/FRESA.CAD/src/FRESAcommons.cpp                       |  866 +++---
 FRESA.CAD-3.0.0/FRESA.CAD/src/FRESAcommons.h                         |   37 
 FRESA.CAD-3.0.0/FRESA.CAD/src/binaryFeatureSelectionCpp.cpp          |  411 +-
 FRESA.CAD-3.0.0/FRESA.CAD/src/outcheck.txt                           |only
 FRESA.CAD-3.0.0/FRESA.CAD/src/rankInverseNormalCpp.cpp               |    4 
 FRESA.CAD-3.0.0/FRESA.CAD/src/regresionFeatureSelectionCpp.cpp       |  320 +-
 91 files changed, 5984 insertions(+), 5933 deletions(-)

More information about FRESA.CAD at CRAN
Permanent link

Package toxplot (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-09-20 0.1.0

Permanent link
Package sdm (with last version 1.0-41) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-07-26 1.0-41

Permanent link
Package SciencesPo (with last version 1.4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-08-04 1.4.1
2016-06-13 1.4.0
2016-01-22 1.3.9
2015-10-19 1.3.8
2015-08-13 1.3.7
2015-07-27 1.3.6
2015-07-15 1.3.5
2015-02-14 1.02.12
2014-11-21 0.11.21
2014-05-27 0.05.21
2014-03-20 0.03.21
2013-08-27 0.3.8.27

Permanent link
Package cbsodataR (with last version 0.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-01-20 0.2.1

Permanent link
Package pinyin (with last version 1.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-07-18 1.1.0
2017-06-19 1.0.2

Permanent link
Package ggCompNet (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-12-31 0.1.0

Permanent link
Package codingMatrices (with last version 0.3.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-05-04 0.3.1
2017-04-18 0.3.0
2017-02-23 0.2.2
2016-07-09 0.2.1
2016-02-15 0.2.0
2016-02-10 0.1.1

Permanent link
Package POUMM (with last version 1.3.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-07-02 1.3.2
2017-06-15 1.3.0
2017-03-27 1.2.2
2017-03-12 1.2.1

Permanent link
Package pasta (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-12-12 0.1.0

Permanent link
Package aVirtualTwins (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-10-09 1.0.0

Permanent link
Package openwindfarm (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-07-12 0.1.0

Permanent link
Package wnominate updated to version 1.2.1 with previous version 1.2 dated 2016-07-30

Title: Roll Call Analysis Software
Description: Estimates Poole and Rosenthal W-NOMINATE scores from roll call votes supplied though a 'rollcall' object from package 'pscl'.
Author: Keith Poole <ktpoole@uga.edu>, Jeffrey Lewis <jblewis@ucla.edu>, James Lo <lojames@usc.edu> and Royce Carroll <rcarroll@rice.edu>
Maintainer: ORPHANED

Diff between wnominate versions 1.2 dated 2016-07-30 and 1.2.1 dated 2018-02-01

 wnominate-1.2.1/wnominate/DESCRIPTION            |   10 ++++++----
 wnominate-1.2.1/wnominate/MD5                    |   10 +++++-----
 wnominate-1.2.1/wnominate/build/vignette.rds     |binary
 wnominate-1.2.1/wnominate/inst/doc/wnominate.pdf |binary
 wnominate-1.2.1/wnominate/src/init.c             |only
 wnominate-1.2.1/wnominate/src/wnominate.f90      |   14 +++++++-------
 wnominate-1.2/wnominate/src/Makevars             |only
 7 files changed, 18 insertions(+), 16 deletions(-)

More information about wnominate at CRAN
Permanent link

Package BsMD updated to version 2013.0718-1 with previous version 2013.0718 dated 2013-07-19

Title: Bayes Screening and Model Discrimination
Description: Bayes screening and model discrimination follow-up designs.
Author: Ernesto Barrios based on Daniel Meyer's code.
Maintainer: ORPHANED

Diff between BsMD versions 2013.0718 dated 2013-07-19 and 2013.0718-1 dated 2018-02-01

 DESCRIPTION |   13 ++++++++-----
 MD5         |    7 ++++---
 NAMESPACE   |    1 +
 src/bsmd.f  |    4 ++--
 src/init.c  |only
 5 files changed, 15 insertions(+), 10 deletions(-)

More information about BsMD at CRAN
Permanent link

Package cvplogistic (with last version 3.1-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-03-18 3.1-0
2012-06-05 2.1-0
2012-05-07 2.0-0
2011-10-20 1.0-0

Permanent link
Package oc (with last version 0.98) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-11-07 0.98

Permanent link
Package solidearthtide (with last version 1.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-09-06 1.0.2
2015-08-08 1.0.0

Permanent link
Package dagbag (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-06-25 1.1

Permanent link
Package grppenalty (with last version 2.1-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-02-17 2.1-0

Permanent link
Package qtutils (with last version 0.1-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-05-23 0.1-3
2012-05-09 0.1-2

Permanent link
Package BCEs0 (with last version 1.1-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-08-07 1.1-1
2013-11-15 1.1
2013-07-22 1.0

Permanent link
Package nimble (with last version 0.6-8) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-11-22 0.6-8
2017-11-15 0.6-7
2017-07-28 0.6-6
2017-06-06 0.6-5
2017-04-25 0.6-4
2016-12-14 0.6-3
2016-11-23 0.6-2
2016-10-11 0.6-1
2016-09-02 0.6

Permanent link
Package reReg updated to version 1.1-1 with previous version 1.1-0 dated 2017-12-22

Title: Recurrent Event Regression
Description: A collection of regression models for recurrent event process and failure time. Available methods include these from Xu et al. (2017) <doi:10.1080/01621459.2016.1173557>, Lin et al. (2000) <doi:10.1111/1467-9868.00259>, Wang et al. (2001) <doi:10.1198/016214501753209031>, Ghosh and Lin (2003) <doi:10.1111/j.0006-341X.2003.00102.x>, and Huang and Wang (2004) <doi:10.1198/016214504000001033>.
Author: Sy Han (Steven) Chiou
Maintainer: Sy Han (Steven) Chiou <schiou@utdallas.edu>

Diff between reReg versions 1.1-0 dated 2017-12-22 and 1.1-1 dated 2018-02-01

 DESCRIPTION       |    8 ++++----
 MD5               |   10 +++++-----
 man/plot.reReg.Rd |    2 +-
 man/plotHaz.Rd    |    2 +-
 man/plotRate.Rd   |    2 +-
 man/reReg.Rd      |    4 ++--
 6 files changed, 14 insertions(+), 14 deletions(-)

More information about reReg at CRAN
Permanent link

Package vdiffr updated to version 0.2.2 with previous version 0.2.1 dated 2017-10-09

Title: Visual Regression Testing and Graphical Diffing
Description: An extension to the 'testthat' package that makes it easy to add graphical unit tests. It provides a Shiny application to manage the test cases.
Author: Lionel Henry [cre, aut], RStudio [cph], Carl Sutherland [aut] (jg-imagediff library), Humble Software [cph] (jg-imagediff library), David Hong [aut] (TwoFace library), jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/htmlwidgets/lib/jquery-authors.txt)
Maintainer: Lionel Henry <lionel@rstudio.com>

Diff between vdiffr versions 0.2.1 dated 2017-10-09 and 0.2.2 dated 2018-02-01

 DESCRIPTION                                                         |    6 -
 MD5                                                                 |   10 +-
 NEWS.md                                                             |   11 +++
 R/testthat-ui.R                                                     |   35 ++++++----
 tests/testthat/mock-pkg-skip-newer/tests/testthat/test-skip-newer.R |    4 -
 tests/testthat/mock-pkg-skip-older/tests/testthat/test-skip-newer.R |    4 -
 6 files changed, 46 insertions(+), 24 deletions(-)

More information about vdiffr at CRAN
Permanent link

Package oem updated to version 2.0.7 with previous version 2.0.6 dated 2017-07-08

Title: Orthogonalizing EM
Description: Solves penalized least squares problems for big tall data using the orthogonalizing EM algorithm of Xiong et al. (2016) <doi: 10.1080/00401706.2015.1054436>. The main fitting function is oem() and the functions cv.oem() and xval.oem() are for cross validation, the latter being an accelerated cross validation function for linear models. The big.oem() function allows for out of memory fitting.
Author: Bin Dai [aut], Jared Huling [aut, cre], Yixuan Qiu [ctb], Gael Guennebaud [cph], Jitse Niesen [cph]
Maintainer: Jared Huling <jaredhuling@gmail.com>

Diff between oem versions 2.0.6 dated 2017-07-08 and 2.0.7 dated 2018-02-01

 DESCRIPTION                   |   15 +-
 MD5                           |   36 +++---
 R/big_oem.R                   |   71 +++++++++---
 R/cv_oem.R                    |    2 
 R/methods.R                   |    2 
 R/oem_xtx.R                   |    2 
 R/oem_xval.R                  |    2 
 R/utils.R                     |   47 ++++----
 README.md                     |  151 +++++++++++++--------------
 build/vignette.rds            |binary
 inst/doc/oem_vignette.Rmd     |    6 -
 inst/doc/oem_vignette.html    |  232 +++++++++++++-----------------------------
 man/big.oem.Rd                |    4 
 man/cv.oem.Rd                 |    4 
 man/oem.xtx.Rd                |    4 
 man/xval.oem.Rd               |    4 
 src/oem_fb_big.cpp            |only
 vignettes/The_oem_Package.pdf |only
 vignettes/mult-1.png          |binary
 vignettes/oem_vignette.Rmd    |    6 -
 20 files changed, 273 insertions(+), 315 deletions(-)

More information about oem at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.