Title: Package for Community Ecology and Suitability Analysis
Description: Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
Author: Roeland Kindt
Maintainer: Roeland Kindt <R.KINDT@CGIAR.ORG>
Diff between BiodiversityR versions 2.8-4 dated 2017-09-05 and 2.9-1 dated 2018-02-10
DESCRIPTION | 8 MD5 | 54 ++-- NAMESPACE | 1 R/ensemble.VIF.R | 12 - R/ensemble.analogue.R | 12 - R/ensemble.batch.R | 67 ++++-- R/ensemble.bioclim.R | 12 - R/ensemble.calibrate.models.R | 457 +++++++++++++++++++---------------------- R/ensemble.calibrate.weights.R | 12 - R/ensemble.ecocrop.R | 15 - R/ensemble.mean.R | 11 R/ensemble.novel.R | 15 - R/ensemble.plot.R | 71 ++++-- R/ensemble.raster.R | 198 ++++++++++++++--- R/ensemble.spatialThin.R |only R/ensemble.zones.R | 10 R/evaluation.strip.data.R | 246 +++++++++++++++------- inst/ChangeLog | 43 +++ inst/etc/BiodiversityGUI.R | 9 man/ensemble.Rd | 35 +-- man/ensemble.analogue.Rd | 4 man/ensemble.batch.Rd | 52 ++++ man/ensemble.bioclim.Rd | 4 man/ensemble.ecocrop.Rd | 4 man/ensemble.novel.Rd | 4 man/ensemble.raster.Rd | 5 man/ensemble.spatialThin.Rd |only man/ensemble.zones.Rd | 4 man/evaluation.strip.Rd | 4 29 files changed, 888 insertions(+), 481 deletions(-)
Title: Simultaneous Generation of Multivariate Binary and Normal
Variates
Description: Generating multiple binary and normal variables simultaneously given marginal characteristics and association structure based on the methodology proposed by Demirtas and Doganay (2012).
Author: Anup Amatya, Hakan Demirtas
Maintainer: Anup Amatya <aamatya@nmsu.edu>
Diff between BinNor versions 2.1 dated 2016-05-27 and 2.2 dated 2018-02-10
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/BinNor-package.Rd | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: A Tidy API for Graph Manipulation
Description: A graph, while not "tidy" in itself, can be thought of as two tidy
data frames describing node and edge data respectively. 'tidygraph'
provides an approach to manipulate these two virtual data frames using the
API defined in the 'dplyr' package, as well as provides tidy interfaces to
a lot of common graph algorithms.
Author: Thomas Lin Pedersen [cre, aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between tidygraph versions 1.0.0 dated 2017-07-08 and 1.1.0 dated 2018-02-10
DESCRIPTION | 22 ++++-- LICENSE |only MD5 | 113 ++++++++++++++++++---------------- NAMESPACE | 86 ++++++++++++++++++++++++-- NEWS.md |only R/RcppExports.R | 4 - R/aaa.R | 21 ++++++ R/activate.R | 43 ++++++++++++- R/arrange.R | 3 R/bind.R | 1 R/centrality.R | 125 +++++++++++++++++++++++++++++++++++++- R/context.R | 76 ++++++++++++++++++++++- R/data_frame.R | 46 ++++++++++++- R/distinct.R | 3 R/edge.R | 40 ++++++++++++ R/filter.R | 5 - R/graph_types.R |only R/group.R | 46 ++++++++++--- R/group_by.R | 3 R/list.R | 7 +- R/morph.R | 43 +++++++++++-- R/morphers.R | 62 +++++++++++++++++- R/mutate.R | 42 +++++++++++- R/node.R | 52 +++++++++++++++ R/node_rank.R |only R/play.R | 62 ------------------ R/rename.R | 3 R/reroute.R | 3 R/select.R | 3 R/slice.R | 5 - R/tbl_graph.R | 29 +------- R/tidygraph-package.R | 2 README.md | 28 ++++---- man/activate.Rd | 22 ++++++ man/centrality.Rd | 117 ++++++++++++++++++++++++++++++++++- man/component_games.Rd | 1 man/dot-register_graph_context.Rd |only man/edge_types.Rd | 25 +++++++ man/evolution_games.Rd | 1 man/figures |only man/graph_join.Rd | 2 man/graph_types.Rd |only man/group_graph.Rd | 4 - man/local_graph.Rd | 8 +- man/map_bfs.Rd | 1 man/map_bfs_back.Rd | 1 man/map_dfs.Rd | 1 man/map_dfs_back.Rd | 1 man/map_local.Rd | 2 man/morph.Rd | 14 +++- man/morphers.Rd | 28 ++++++++ man/mutate_as_tbl.Rd |only man/node_measures.Rd | 25 +++++++ man/node_rank.Rd |only man/node_types.Rd | 15 ++++ man/reexports.Rd | 53 ---------------- man/sampling_games.Rd | 1 man/tbl_graph.Rd | 2 man/tidygraph-package.Rd |only man/type_games.Rd | 1 man/with_graph.Rd |only src/RcppExports.cpp | 8 +- tests/testthat/test-centrality.R | 4 - 63 files changed, 1021 insertions(+), 294 deletions(-)
Title: Relational Query Generator for Data Manipulation
Description: A query generator based on Edgar F. Codd's relational
algebra and operator names (plus experience using 'SQL' at big data
scale). The design represents an attempt to make 'SQL' more teachable by
denoting composition a sequential pipeline notation instead of nested
queries or functions. Package features include: data processing trees
or pipelines as observable objects (able to report both columns
produced and columns used), optimized 'SQL' generation as an explicit
user visible modeling step, and convenience methods for applying query
trees to in-memory 'data.frame's.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rquery versions 0.3.0 dated 2018-01-31 and 0.3.1 dated 2018-02-10
rquery-0.3.0/rquery/inst/doc/AdHocQueries.R |only rquery-0.3.0/rquery/inst/doc/AdHocQueries.Rmd |only rquery-0.3.0/rquery/inst/doc/AdHocQueries.html |only rquery-0.3.0/rquery/vignettes/AdHocQueries.Rmd |only rquery-0.3.1/rquery/DESCRIPTION | 10 - rquery-0.3.1/rquery/MD5 | 56 +++--- rquery-0.3.1/rquery/NAMESPACE | 28 +++ rquery-0.3.1/rquery/NEWS.md | 6 rquery-0.3.1/rquery/R/db_info.R | 4 rquery-0.3.1/rquery/R/ex_data_frame.R | 56 +++--- rquery-0.3.1/rquery/R/extend.R | 135 ++++++++++------ rquery-0.3.1/rquery/R/materialize.R |only rquery-0.3.1/rquery/R/natural_join.R | 53 ++++-- rquery-0.3.1/rquery/R/order_by.R | 45 +++-- rquery-0.3.1/rquery/R/package.R | 1 rquery-0.3.1/rquery/R/pre_sql.R | 8 rquery-0.3.1/rquery/R/project.R | 61 +++++-- rquery-0.3.1/rquery/R/relop.R | 25 --- rquery-0.3.1/rquery/R/rename.R | 36 +++- rquery-0.3.1/rquery/R/select_columns.R | 31 ++- rquery-0.3.1/rquery/R/select_rows.R | 59 +++++-- rquery-0.3.1/rquery/R/sql_node.R | 29 ++- rquery-0.3.1/rquery/R/table_source.R | 12 - rquery-0.3.1/rquery/R/theta_join.R | 138 +++++++++++------ rquery-0.3.1/rquery/R/utils.R | 5 rquery-0.3.1/rquery/README.md | 14 - rquery-0.3.1/rquery/build/vignette.rds |binary rquery-0.3.1/rquery/inst/doc/AssigmentPartitioner.html | 16 - rquery-0.3.1/rquery/inst/doc/QueryGeneration.html | 16 - rquery-0.3.1/rquery/man/execute_data_frame.Rd | 13 - rquery-0.3.1/rquery/man/materialize.Rd |only rquery-0.3.1/rquery/man/rquery_apply_to_data_frame.Rd | 23 +- 32 files changed, 550 insertions(+), 330 deletions(-)
Title: Ensembling Regularized Linear Models
Description: Functions for computing the ensembles of regularized linear
regression estimators defined in Christidis, Lakshmanan, Smucler and Zamar (2017)
<arXiv:1712.03561>. The procedure works on top of a given penalized linear regression estimator,
the Elastic Net in this implementation, by fitting it to possibly overlapping subsets of features, while at the same
time encouraging diversity among the subsets, to reduce the correlations between the predictions
that result from each fitted model. The predictions from the models are then aggregated.
Author: Anthony Christidis <anthony.christidis@stat.ubc.ca>,
Ezequiel Smucler <ezequiels.90@gmail.com>,
Ruben Zamar <ruben@stat.ubc.ca>
Maintainer: Ezequiel Smucler <ezequiels.90@gmail.com>
Diff between ensembleEN versions 1.1.1 dated 2018-01-04 and 1.1.2 dated 2018-02-10
DESCRIPTION | 8 +- MD5 | 24 +++--- NEWS |only R/Ensembles_Elastic_Net_R.R | 6 - R/RcppExports.R | 8 ++ R/methods.R | 4 - README.md | 8 +- man/cv.ensembleEN.Rd | 6 - src/Ensembles_Elastic_Net.cpp | 47 ++++++------ src/RcppExports.cpp | 37 ++++++++++ tests/testthat/test_CV.R |only tests/testthat/test_glmnet.R | 6 - tests/testthat/test_obj_decrease.R | 134 +++++++++++-------------------------- tests/testthat/test_pred_method.R | 24 ++++-- 14 files changed, 162 insertions(+), 150 deletions(-)
Title: Utility Functions for Survival Analysis
Description: Functional programming principles to iteratively run Cox
regression and plot its results. The results are reported in tidy data
frames. Additional utility functions are available for working with
other aspects of survival analysis such as survival curves, C-statistics,
etc.
Author: Fong Chun Chan [aut, cre]
Maintainer: Fong Chun Chan <fongchunchan@gmail.com>
Diff between survutils versions 1.0.0 dated 2017-03-22 and 1.0.1 dated 2018-02-10
survutils-1.0.0/survutils/LICENSE |only survutils-1.0.1/survutils/DESCRIPTION | 14 survutils-1.0.1/survutils/MD5 | 49 +- survutils-1.0.1/survutils/NEWS.md | 7 survutils-1.0.1/survutils/R/cox_res.R | 115 ++++ survutils-1.0.1/survutils/R/get_c_stat.R | 2 survutils-1.0.1/survutils/R/get_cox_summary.R | 2 survutils-1.0.1/survutils/R/iter_get_cox_res.R | 3 survutils-1.0.1/survutils/README.md | 241 ++++++---- survutils-1.0.1/survutils/man/add_sig_line_to_plot.Rd |only survutils-1.0.1/survutils/man/figures/get_cox_res_example-1.png |binary survutils-1.0.1/survutils/man/figures/get_cox_res_group_colors_example-1.png |binary survutils-1.0.1/survutils/man/figures/get_cox_res_group_example-1.png |binary survutils-1.0.1/survutils/man/figures/get_cox_res_group_example_facet_row-1.png |binary survutils-1.0.1/survutils/man/figures/iter-cox-res-example-1.png |binary survutils-1.0.1/survutils/man/figures/iter-cox-res-group-example-1.png |binary survutils-1.0.1/survutils/man/get_c_stat.Rd | 3 survutils-1.0.1/survutils/man/get_cox_res.Rd | 6 survutils-1.0.1/survutils/man/get_cox_summary.Rd | 3 survutils-1.0.1/survutils/man/get_logrank_res.Rd | 1 survutils-1.0.1/survutils/man/get_nrisk_tbl.Rd | 1 survutils-1.0.1/survutils/man/get_surv_prob.Rd | 1 survutils-1.0.1/survutils/man/iter_get_cox_res.Rd | 6 survutils-1.0.1/survutils/man/plot_cox_res.Rd | 11 survutils-1.0.1/survutils/man/survutils.Rd | 1 survutils-1.0.1/survutils/tests |only 26 files changed, 328 insertions(+), 138 deletions(-)
Title: Environment for Evaluating Recommender Systems
Description: Processes standard recommendation datasets (e.g., a user-item rating matrix) as input and generates rating predictions and lists of recommended items. Standard algorithm implementations which are included in this package are the following: Global/Item/User-Average baselines, Weighted Slope One, Item-Based KNN, User-Based KNN, FunkSVD, BPR and weighted ALS. They can be assessed according to the standard offline evaluation methodology (Shani, et al. (2011) <doi:10.1007/978-0-387-85820-3_8>) for recommender systems using measures such as MAE, RMSE, Precision, Recall, F1, AUC, NDCG, RankScore and coverage measures. The package (Coba, et al.(2017) <doi: 10.1007/978-3-319-60042-0_36>) is intended for rapid prototyping of recommendation algorithms and education purposes.
Author: Ludovik Çoba [aut, cre, cph],
Markus Zanker [ctb],
Panagiotis Symeonidis [ctb]
Maintainer: Ludovik Çoba <Ludovik.Coba@inf.unibz.it>
Diff between rrecsys versions 0.9.7.2 dated 2017-11-16 and 0.9.7.3 dated 2018-02-10
rrecsys-0.9.7.2/rrecsys/man/evalrec.Rd |only rrecsys-0.9.7.3/rrecsys/DESCRIPTION | 8 ++--- rrecsys-0.9.7.3/rrecsys/MD5 | 22 +++++++-------- rrecsys-0.9.7.3/rrecsys/R/ALG_slopeOne.R | 27 ++++++++++--------- rrecsys-0.9.7.3/rrecsys/R/ALG_wALS.R | 2 + rrecsys-0.9.7.3/rrecsys/R/evalModel.R | 4 +- rrecsys-0.9.7.3/rrecsys/R/evalRec.R | 4 -- rrecsys-0.9.7.3/rrecsys/R/recommendHPR.R | 3 +- rrecsys-0.9.7.3/rrecsys/build/vignette.rds |binary rrecsys-0.9.7.3/rrecsys/man/evalRec.Rd |only rrecsys-0.9.7.3/rrecsys/src/FSVDupdater.cpp | 4 +- rrecsys-0.9.7.3/rrecsys/src/FSVDupdaterSparseMat.cpp | 4 +- rrecsys-0.9.7.3/rrecsys/src/predictIB.cpp | 1 13 files changed, 42 insertions(+), 37 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-06 1.6.4
2016-01-29 1.6.3
2016-01-11 1.6.2
2015-11-30 1.6.1
2015-10-11 1.6.0
2015-09-11 1.5.1
Title: Generate Descriptive Statistics & Explore Statistical
Distributions
Description: Generate descriptive statistics such as measures of location,
dispersion, frequency tables, cross tables, group summaries and multiple
one/two way tables. Visualize and compute percentiles/probabilities of
normal, t, f, chi square and binomial distributions.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between descriptr versions 0.3.0 dated 2017-12-11 and 0.4.0 dated 2018-02-10
descriptr-0.3.0/descriptr/inst/application/helper |only descriptr-0.3.0/descriptr/tests/testthat/test-summary-stats.R |only descriptr-0.4.0/descriptr/DESCRIPTION | 14 descriptr-0.4.0/descriptr/LICENSE | 2 descriptr-0.4.0/descriptr/MD5 | 149 +- descriptr-0.4.0/descriptr/NAMESPACE | 25 descriptr-0.4.0/descriptr/NEWS.md | 22 descriptr-0.4.0/descriptr/R/dist-binomial.R | 290 ++--- descriptr-0.4.0/descriptr/R/dist-chisquare.R | 302 ++--- descriptr-0.4.0/descriptr/R/dist-f.R | 318 ++---- descriptr-0.4.0/descriptr/R/dist-normal.R | 358 +++--- descriptr-0.4.0/descriptr/R/dist-t.R | 384 +++---- descriptr-0.4.0/descriptr/R/ds-cross-mult.R | 141 +- descriptr-0.4.0/descriptr/R/ds-cross-table.R | 234 ++-- descriptr-0.4.0/descriptr/R/ds-data-mtcarz.R |only descriptr-0.4.0/descriptr/R/ds-describe.R | 216 +--- descriptr-0.4.0/descriptr/R/ds-descriptr.R | 9 descriptr-0.4.0/descriptr/R/ds-freq-cont.R | 103 +- descriptr-0.4.0/descriptr/R/ds-freq-mult.R | 18 descriptr-0.4.0/descriptr/R/ds-freq-table.R | 105 +- descriptr-0.4.0/descriptr/R/ds-group-summary.R | 174 ++- descriptr-0.4.0/descriptr/R/ds-launch-shiny-app.R | 4 descriptr-0.4.0/descriptr/R/ds-mult-table.R | 94 - descriptr-0.4.0/descriptr/R/ds-multistats.R | 13 descriptr-0.4.0/descriptr/R/ds-output.R | 467 ++++----- descriptr-0.4.0/descriptr/R/ds-screener.R | 105 -- descriptr-0.4.0/descriptr/R/ds-summary-stats.R | 105 +- descriptr-0.4.0/descriptr/R/ds-utils.R | 339 +++--- descriptr-0.4.0/descriptr/README.md | 124 +- descriptr-0.4.0/descriptr/data/mtcarz.rda |only descriptr-0.4.0/descriptr/inst/application/logic/logic_cross.R | 27 descriptr-0.4.0/descriptr/inst/application/logic/logic_freq_qual.R | 32 descriptr-0.4.0/descriptr/inst/application/logic/logic_freq_quant.R | 43 descriptr-0.4.0/descriptr/inst/application/logic/logic_group_summary.R | 21 descriptr-0.4.0/descriptr/inst/application/logic/logic_summary.R | 13 descriptr-0.4.0/descriptr/inst/application/logic/logic_transform2.R | 6 descriptr-0.4.0/descriptr/inst/application/logic/logic_upload.R | 20 descriptr-0.4.0/descriptr/inst/application/server.R | 8 descriptr-0.4.0/descriptr/inst/doc/descriptive-stats.R | 62 - descriptr-0.4.0/descriptr/inst/doc/descriptive-stats.Rmd | 89 - descriptr-0.4.0/descriptr/inst/doc/descriptive-stats.html | 515 +++++++--- descriptr-0.4.0/descriptr/inst/doc/distributions.Rmd | 1 descriptr-0.4.0/descriptr/inst/doc/distributions.html | 352 +++++- descriptr-0.4.0/descriptr/man/ds_cross_table.Rd | 18 descriptr-0.4.0/descriptr/man/ds_cvar.Rd | 3 descriptr-0.4.0/descriptr/man/ds_freq_cont.Rd | 18 descriptr-0.4.0/descriptr/man/ds_freq_table.Rd | 22 descriptr-0.4.0/descriptr/man/ds_group_summary.Rd | 20 descriptr-0.4.0/descriptr/man/ds_multi_stats.Rd | 2 descriptr-0.4.0/descriptr/man/ds_oway_tables.Rd | 6 descriptr-0.4.0/descriptr/man/ds_screener.Rd | 9 descriptr-0.4.0/descriptr/man/ds_summary_stats.Rd | 8 descriptr-0.4.0/descriptr/man/ds_tailobs.Rd | 4 descriptr-0.4.0/descriptr/man/mtcarz.Rd |only descriptr-0.4.0/descriptr/tests/figs |only descriptr-0.4.0/descriptr/tests/testthat/test-binom-dist.R | 133 +- descriptr-0.4.0/descriptr/tests/testthat/test-chi-dist.R | 84 - descriptr-0.4.0/descriptr/tests/testthat/test-cross-table.R | 87 - descriptr-0.4.0/descriptr/tests/testthat/test-describe.R | 154 +- descriptr-0.4.0/descriptr/tests/testthat/test-f-dist.R | 81 - descriptr-0.4.0/descriptr/tests/testthat/test-freq-cont.R | 24 descriptr-0.4.0/descriptr/tests/testthat/test-freq-table.R | 19 descriptr-0.4.0/descriptr/tests/testthat/test-group-summary.R | 74 - descriptr-0.4.0/descriptr/tests/testthat/test-mult-table.R | 1 descriptr-0.4.0/descriptr/tests/testthat/test-multistats.R | 7 descriptr-0.4.0/descriptr/tests/testthat/test-normal-dist.R | 112 +- descriptr-0.4.0/descriptr/tests/testthat/test-output.R | 73 - descriptr-0.4.0/descriptr/tests/testthat/test-screen.R | 75 - descriptr-0.4.0/descriptr/tests/testthat/test-t-dist.R | 116 +- descriptr-0.4.0/descriptr/tests/testthat/test-utils.R | 186 +-- descriptr-0.4.0/descriptr/vignettes/descriptive-stats.Rmd | 89 - descriptr-0.4.0/descriptr/vignettes/distributions.Rmd | 1 72 files changed, 3524 insertions(+), 3206 deletions(-)
Title: Easily Source Publicly Available Data on Derivatives
Description: Post Global Financial Crisis derivatives reforms have lifted the
veil off over-the-counter (OTC) derivative markets. Swap Execution Facilities
(SEFs) and Swap Data Repositories (SDRs) now publish data on swaps that are
traded on or reported to those facilities (respectively). This package provides
you the ability to get this data from supported sources.
Author: Imanuel Costigan [aut, cre]
Maintainer: Imanuel Costigan <i.costigan@me.com>
Diff between dataonderivatives versions 0.3.0 dated 2017-05-28 and 0.3.1 dated 2018-02-10
DESCRIPTION | 14 ++++---- MD5 | 8 ++--- NEWS.md | 9 +++++ R/bsdr.R | 6 ++- README.md | 94 ++++++++++++++++++++++++++++++++++++++++-------------------- 5 files changed, 88 insertions(+), 43 deletions(-)
More information about dataonderivatives at CRAN
Permanent link
Title: Downloads Box Office Information for Given Dates (How Much Each
Movie Earned in Theaters)
Description: Download daily box office information (how much each movie earned
in theaters) using data from either Box Office Mojo (<http://www.boxofficemojo.com/>) or
The Numbers (<http://www.the-numbers.com/>).
Author: Jacob Kaplan [aut, cre]
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between boxoffice versions 1.0.0 dated 2018-01-24 and 1.0.1 dated 2018-02-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/Using-boxoffice.html | 4 ++-- tests/testthat/test-column-values.R | 19 ++++++++++--------- 4 files changed, 18 insertions(+), 17 deletions(-)