Title: Proper Scoring Rules
Description: Evaluating probabilistic forecasts via proper scoring rules. scoring implements the beta, power, and pseudospherical families of proper scoring rules, along with ordered versions of the latter two families. Included among these families are popular rules like the Brier (quadratic) score, logarithmic score, and spherical score. For two-alternative forecasts, also includes functionality for plotting scores that one would obtain under specific scoring rules.
Author: Ed Merkle
Maintainer: Ed Merkle <merklee@missouri.edu>
Diff between scoring versions 0.5-1 dated 2014-07-01 and 0.6 dated 2018-02-11
scoring-0.5-1/scoring/inst/tests |only scoring-0.6/scoring/DESCRIPTION | 16 -- scoring-0.6/scoring/MD5 | 41 ++--- scoring-0.6/scoring/NAMESPACE | 7 scoring-0.6/scoring/NEWS | 11 + scoring-0.6/scoring/R/brierscore.R | 228 +++++++++++++++++++++++++++--- scoring-0.6/scoring/R/calcDecomp.R |only scoring-0.6/scoring/R/calcscore.R | 90 +++++++---- scoring-0.6/scoring/R/fams.R | 29 ++- scoring-0.6/scoring/R/logscore.R | 4 scoring-0.6/scoring/R/scalescores.R | 2 scoring-0.6/scoring/R/scoreitems.R | 59 ++++++- scoring-0.6/scoring/R/utils.R |only scoring-0.6/scoring/README |only scoring-0.6/scoring/data/WeatherProbs.rda |binary scoring-0.6/scoring/data/WorldEvents.rda |binary scoring-0.6/scoring/inst/CITATION | 8 - scoring-0.6/scoring/man/WeatherProbs.Rd | 2 scoring-0.6/scoring/man/brierscore.Rd | 38 ++++- scoring-0.6/scoring/man/calcscore.Rd | 7 scoring-0.6/scoring/man/logscore.Rd | 13 + scoring-0.6/scoring/tests/run-all.R | 2 scoring-0.6/scoring/tests/testthat |only 23 files changed, 440 insertions(+), 117 deletions(-)
Title: Multidimensional Vote Scaling Software
Description: Estimates W-NOMINATE scores using parliamentary voting data
(Poole et al 2007) <doi:10.18637/jss.v042.i14> supplied though a
'rollcall' object from package 'pscl'.
Author: Keith Poole <ktpoole@uga.edu>, Jeffrey Lewis
<jblewis@ucla.edu>, James Lo <lojames@usc.edu> and Royce
Carroll <rcarroll@rice.edu>
Maintainer: James Lo <lojames@usc.edu>
Diff between wnominate versions 1.2.2 dated 2018-02-04 and 1.2.5 dated 2018-02-11
ChangeLog | 11 +++++++---- DESCRIPTION | 22 +++++++++------------- MD5 | 16 +++++++++------- build/vignette.rds |binary man/UN.Rd | 1 - man/sen90.Rd | 1 - man/sen90wnom.Rd | 1 - src/Makevars |only src/Makevars.win |only src/wnominate.f90 | 21 ++++++++++++++------- 10 files changed, 39 insertions(+), 34 deletions(-)
Title: Entrez in R
Description: Provides an R interface to the NCBI's EUtils API
allowing users to search databases like GenBank and PubMed, process the
results of those searches and pull data into their R sessions.
Author: David Winter [aut, cre] (ORCID = 0000-0002-6165-0029),
Scott Chamberlain [ctb] (ORCID = 0000-0003-1444-9135),
Han Guangchun [ctb] (ORCID = 0000-0001-9277-2507)
Maintainer: David Winter <david.winter@gmail.com>
Diff between rentrez versions 1.1.0 dated 2017-05-31 and 1.2.0 dated 2018-02-11
DESCRIPTION | 23 +++-- LICENSE | 2 MD5 | 36 +++++---- NAMESPACE | 1 NEWS | 13 +++ R/api_keys.r |only R/base.r | 38 ++++++--- R/entrez_fetch.r | 2 R/entrez_global_query.r | 1 R/entrez_link.r | 5 - R/entrez_post.r | 2 R/entrez_search.r | 12 ++- inst/CITATION |only inst/doc/rentrez_tutorial.R | 4 + inst/doc/rentrez_tutorial.Rmd | 43 ++++++++++ inst/doc/rentrez_tutorial.html | 161 ++++++++++++++++++++++------------------- man/entrez_link.Rd | 4 - man/entrez_search.Rd | 16 ++-- man/set_entrez_key.Rd |only tests/testthat/test_api_key.r |only vignettes/rentrez_tutorial.Rmd | 43 ++++++++++ 21 files changed, 275 insertions(+), 131 deletions(-)
Title: Inverse Regression for Text Analysis
Description: Multinomial (inverse) regression inference for text documents and associated attributes. For details see: Taddy (2013 JASA) Multinomial Inverse Regression for Text Analysis <arXiv:1012.2098> and Taddy (2015, AoAS), Distributed Multinomial Regression, <arXiv:1311.6139>. A minimalist partial least squares routine is also included. Note that the topic modeling capability of earlier 'textir' is now a separate package, 'maptpx'.
Author: Matt Taddy <mataddy@gmail.com>
Maintainer: Matt Taddy <mataddy@gmail.com>
Diff between textir versions 2.0-4 dated 2015-08-18 and 2.0-5 dated 2018-02-11
textir-2.0-4/textir/man/mnlm.Rd |only textir-2.0-5/textir/DESCRIPTION | 14 +- textir-2.0-5/textir/MD5 | 24 +-- textir-2.0-5/textir/NAMESPACE | 32 ++-- textir-2.0-5/textir/R/dtm.R | 68 +++++----- textir-2.0-5/textir/R/mnlm.R | 70 +++++----- textir-2.0-5/textir/R/pls.R | 220 ++++++++++++++++----------------- textir-2.0-5/textir/README.md | 24 +-- textir-2.0-5/textir/man/congress109.Rd | 152 +++++++++++----------- textir-2.0-5/textir/man/corr.Rd | 68 +++++----- textir-2.0-5/textir/man/pls.Rd | 154 +++++++++++------------ textir-2.0-5/textir/man/srproj.Rd |only textir-2.0-5/textir/man/tfidf.Rd | 58 ++++---- textir-2.0-5/textir/man/we8there.Rd | 157 +++++++++++------------ 14 files changed, 522 insertions(+), 519 deletions(-)
Title: Interface to the 'Orcid.org' 'API'
Description: Client for the 'Orcid.org' 'API' (<https://orcid.org/>).
Functions included for searching for people, searching by 'DOI',
and searching by 'Orcid' 'ID'.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rorcid versions 0.3.0 dated 2016-09-21 and 0.4.0 dated 2018-02-11
rorcid-0.3.0/rorcid/inst/doc/rorcid_vignette.R |only rorcid-0.4.0/rorcid/DESCRIPTION | 24 rorcid-0.4.0/rorcid/LICENSE | 2 rorcid-0.4.0/rorcid/MD5 | 111 +- rorcid-0.4.0/rorcid/NAMESPACE | 26 rorcid-0.4.0/rorcid/NEWS.md | 24 rorcid-0.4.0/rorcid/R/as.orcid.R | 38 rorcid-0.4.0/rorcid/R/auth.R |only rorcid-0.4.0/rorcid/R/browse.R | 4 rorcid-0.4.0/rorcid/R/check_dois.R | 26 rorcid-0.4.0/rorcid/R/identifiers.R | 57 - rorcid-0.4.0/rorcid/R/orcid.r | 77 + rorcid-0.4.0/rorcid/R/orcid_activities.R |only rorcid-0.4.0/rorcid/R/orcid_address.R |only rorcid-0.4.0/rorcid/R/orcid_bio.R |only rorcid-0.4.0/rorcid/R/orcid_doi.r | 17 rorcid-0.4.0/rorcid/R/orcid_educations.R |only rorcid-0.4.0/rorcid/R/orcid_email.R |only rorcid-0.4.0/rorcid/R/orcid_employments.R |only rorcid-0.4.0/rorcid/R/orcid_external_identifiers.R |only rorcid-0.4.0/rorcid/R/orcid_fundings.R |only rorcid-0.4.0/rorcid/R/orcid_id.r | 67 - rorcid-0.4.0/rorcid/R/orcid_keywords.R |only rorcid-0.4.0/rorcid/R/orcid_other_names.R |only rorcid-0.4.0/rorcid/R/orcid_peer_reviews.R |only rorcid-0.4.0/rorcid/R/orcid_person.R |only rorcid-0.4.0/rorcid/R/orcid_ping.R |only rorcid-0.4.0/rorcid/R/orcid_researcher_urls.R |only rorcid-0.4.0/rorcid/R/orcid_works.R |only rorcid-0.4.0/rorcid/R/rorcid-package.R | 56 + rorcid-0.4.0/rorcid/R/works.R | 48 rorcid-0.4.0/rorcid/R/zzz.R | 118 ++ rorcid-0.4.0/rorcid/README.md | 538 ++--------- rorcid-0.4.0/rorcid/build/vignette.rds |binary rorcid-0.4.0/rorcid/inst/doc/rorcid_vignette.Rmd | 279 ++++- rorcid-0.4.0/rorcid/inst/doc/rorcid_vignette.html | 880 +++++++----------- rorcid-0.4.0/rorcid/inst/ignore/auth.R | 7 rorcid-0.4.0/rorcid/inst/vign |only rorcid-0.4.0/rorcid/man/as.orcid.Rd | 10 rorcid-0.4.0/rorcid/man/browse.Rd | 1 rorcid-0.4.0/rorcid/man/check_dois.Rd | 6 rorcid-0.4.0/rorcid/man/fields.Rd | 1 rorcid-0.4.0/rorcid/man/identifiers.Rd | 33 rorcid-0.4.0/rorcid/man/orcid.Rd | 137 +- rorcid-0.4.0/rorcid/man/orcid_activities.Rd |only rorcid-0.4.0/rorcid/man/orcid_address.Rd |only rorcid-0.4.0/rorcid/man/orcid_auth.Rd |only rorcid-0.4.0/rorcid/man/orcid_bio.Rd |only rorcid-0.4.0/rorcid/man/orcid_doi.Rd | 11 rorcid-0.4.0/rorcid/man/orcid_educations.Rd |only rorcid-0.4.0/rorcid/man/orcid_email.Rd |only rorcid-0.4.0/rorcid/man/orcid_employments.Rd |only rorcid-0.4.0/rorcid/man/orcid_external_identifiers.Rd |only rorcid-0.4.0/rorcid/man/orcid_fundings.Rd |only rorcid-0.4.0/rorcid/man/orcid_id.Rd | 53 - rorcid-0.4.0/rorcid/man/orcid_keywords.Rd |only rorcid-0.4.0/rorcid/man/orcid_other_names.Rd |only rorcid-0.4.0/rorcid/man/orcid_peer_reviews.Rd |only rorcid-0.4.0/rorcid/man/orcid_person.Rd |only rorcid-0.4.0/rorcid/man/orcid_ping.Rd |only rorcid-0.4.0/rorcid/man/orcid_researcher_urls.Rd |only rorcid-0.4.0/rorcid/man/orcid_works.Rd |only rorcid-0.4.0/rorcid/man/rorcid-defunct.Rd | 5 rorcid-0.4.0/rorcid/man/rorcid-package.Rd | 57 + rorcid-0.4.0/rorcid/man/summary.or_cid-defunct.Rd | 1 rorcid-0.4.0/rorcid/man/works.Rd | 21 rorcid-0.4.0/rorcid/tests/testthat/test-as.orcid.R | 15 rorcid-0.4.0/rorcid/tests/testthat/test-identifiers.R | 30 rorcid-0.4.0/rorcid/tests/testthat/test-orcid.R | 31 rorcid-0.4.0/rorcid/tests/testthat/test-orcid_doi.R | 2 rorcid-0.4.0/rorcid/tests/testthat/test-orcid_id.R | 78 - rorcid-0.4.0/rorcid/tests/testthat/test-works.R | 13 rorcid-0.4.0/rorcid/vignettes/rorcid_vignette.Rmd | 279 ++++- 73 files changed, 1657 insertions(+), 1526 deletions(-)
Title: Nested Association Mapping
Description: Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) <doi:10.1093/bioinformatics/btv448>. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.
Author: Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between NAM versions 1.5.4 dated 2017-10-17 and 1.5.5 dated 2018-02-11
DESCRIPTION | 11 ++--- MD5 | 22 +++++------ R/wgr.R | 2 - build/vignette.rds |binary inst/add/cvNAM.R | 81 ++++++++++++++++++------------------------- inst/doc/gwa_description.pdf |binary inst/doc/vignette1.Rmd | 23 +++++++++++- inst/doc/vignette1.html | 27 ++++++++++++-- inst/doc/vignette2.html | 28 +++++++------- man/NAM-package.Rd | 6 +-- src/Functions.cpp | 6 +-- vignettes/vignette1.Rmd | 23 +++++++++++- 12 files changed, 136 insertions(+), 93 deletions(-)
Title: R Interface for Apache Impala
Description: 'SQL' back-end to 'dplyr' for Apache Impala, the massively
parallel processing query engine for Apache 'Hadoop'. Impala enables
low-latency 'SQL' queries on data stored in the 'Hadoop' Distributed
File System '(HDFS)', Apache 'HBase', Apache 'Kudu', and Amazon
Simple Storage Service '(S3)'. See <https://impala.apache.org> for
more information about Impala.
Author: Ian Cook [aut, cre],
Cloudera [cph]
Maintainer: Ian Cook <ian@cloudera.com>
Diff between implyr versions 0.2.1 dated 2017-06-27 and 0.2.2 dated 2018-02-11
DESCRIPTION | 24 - LICENSE | 2 MD5 | 31 - NAMESPACE | 1 NEWS.md | 13 R/db-compute.R |only R/db-impala.R |only R/db-jdbc.R |only R/db-odbc.R |only R/schema.R |only R/sql-escape.R |only R/src_impala.R | 890 +++----------------------------------------- R/tbl_impala.R |only README.md | 6 man/compute.Rd | 2 man/db_desc.Rd | 2 man/reexports.Rd | 2 man/src_impala.Rd | 4 tests/testthat/helper-src.R | 6 tests/testthat/test-data.R | 2 20 files changed, 138 insertions(+), 847 deletions(-)
Title: Gamma Lasso Regression
Description: The gamma lasso algorithm provides regularization paths corresponding to a range of non-convex cost functions between L0 and L1 norms. As much as possible, usage for this package is analogous to that for the glmnet package (which does the same thing for penalization between L1 and L2 norms). For details see: Taddy (2017 JCGS), One-Step Estimator Paths for Concave Regularization, <arXiv:1308.5623>.
Author: Matt Taddy <mataddy@gmail.com>
Maintainer: Matt Taddy <mataddy@gmail.com>
Diff between gamlr versions 1.13-3 dated 2015-08-26 and 1.13-4 dated 2018-02-11
DESCRIPTION | 15 - MD5 | 29 +- NAMESPACE | 43 +-- R/AICc.R | 22 - R/cv.gamlr.R | 375 +++++++++++++------------- R/gamlr.R | 780 ++++++++++++++++++++++++++++---------------------------- README.md | 18 - data/datalist | 2 man/AICc.Rd | 46 +-- man/cv.gamlr.Rd | 161 +++++------ man/gamlr.Rd | 287 ++++++++++---------- man/hockey.Rd | 134 ++++----- src/gamlr.c | 105 +++++-- src/init.c |only src/lhd.c | 16 - src/vec.c | 12 16 files changed, 1056 insertions(+), 989 deletions(-)
Title: Tools for Assessing Estimability of Linear Predictions
Description: Provides tools for determining estimability of linear functions
of regression coefficients, and 'epredict' methods that handle
non-estimable cases correctly. Estimability theory is discussed in
many linear-models textbooks including Chapter 3 of Monahan, JF (2008),
"A Primer on Linear Models", Chapman and Hall (ISBN 978-1-4200-6201-4).
Author: Russell Lenth [aut, cre, cph]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between estimability versions 1.2 dated 2016-11-19 and 1.3 dated 2018-02-11
DESCRIPTION | 15 +++++++++------ MD5 | 13 ++++++++----- NAMESPACE | 1 + R/estble-subsp.R |only R/estimability.R | 1 + README.md |only inst/NEWS | 6 ++++++ man/estble-subspace.Rd |only man/estimability-package.Rd | 22 +++++++++++++++++++--- 9 files changed, 44 insertions(+), 14 deletions(-)
Title: Distributed Multinomial Regression
Description: Fast distributed/parallel estimation for multinomial logistic regression via Poisson factorization and the 'gamlr' package. For details see: Taddy (2015, AoAS), Distributed Multinomial Regression, <arXiv:1311.6139>.
Author: Matt Taddy <mataddy@gmail.com>
Maintainer: Matt Taddy <mataddy@gmail.com>
Diff between distrom versions 0.3-3 dated 2015-08-18 and 1.0 dated 2018-02-11
DESCRIPTION | 15 +- MD5 | 18 +-- NAMESPACE | 26 ++-- R/collapse.R | 146 +++++++++++++------------- R/dmr.R | 276 ++++++++++++++++++++++++--------------------------- README.md | 23 +--- inst/CITATION | 18 +-- man/collapse.Rd | 42 +++---- man/dmr.Rd | 194 +++++++++++++++++------------------ man/dmrcoef-class.Rd | 74 ++++++------- 10 files changed, 407 insertions(+), 425 deletions(-)
Title: Moments of Folded and Doubly Truncated Multivariate
Distributions
Description: It computes the raw moments for the folded and truncated multivariate normal and Student's t-distribution. It also offers specific functions to compute the mean and variance-covariance matrix as well as the cumulative distribution function (cdf) for the folded normal and folded t-distribution. Algorithms are extensions based on Kan, R., & Robotti, C. (2017) <doi:10.1080/10618600.2017.1322092>.
Author: Christian E. Galarza, Victor H. Lachos
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between MomTrunc versions 1.37 dated 2018-01-05 and 1.41 dated 2018-02-11
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/auxiliar.R | 4 ++-- R/functions.R | 2 +- R/meanvarFMD.R | 25 ++++++++++++++----------- R/meanvarTMD.R | 25 ++++++++++++++----------- R/momentsFMD.R | 4 ++-- R/momentsTMD.R | 4 ++-- 8 files changed, 45 insertions(+), 39 deletions(-)
Title: Statistical Inference of Vine Copulas
Description: Provides tools for the statistical analysis of vine copula models.
The package includes tools for parameter estimation, model selection,
simulation, goodness-of-fit tests, and visualization. Tools for estimation,
selection and exploratory data analysis of bivariate copula models are also
provided.
Author: Ulf Schepsmeier [aut],
Jakob Stoeber [aut],
Eike Christian Brechmann [aut],
Benedikt Graeler [aut],
Thomas Nagler [aut, cre],
Tobias Erhardt [aut],
Carlos Almeida [ctb],
Aleksey Min [ctb, ths],
Claudia Czado [ctb, ths],
Mathias Hofmann [ctb],
Matthias Killiches [ctb],
Harry Joe [ctb],
Thibault Vatter [ctb]
Maintainer: Thomas Nagler <thomas.nagler@tum.de>
Diff between VineCopula versions 2.1.3 dated 2017-08-15 and 2.1.4 dated 2018-02-11
VineCopula-2.1.3/VineCopula/inst/include/cdvine.h |only VineCopula-2.1.3/VineCopula/inst/include/condsim.h |only VineCopula-2.1.3/VineCopula/inst/include/deriv.h |only VineCopula-2.1.3/VineCopula/inst/include/deriv2.h |only VineCopula-2.1.3/VineCopula/inst/include/evCopula.h |only VineCopula-2.1.3/VineCopula/inst/include/gof.h |only VineCopula-2.1.3/VineCopula/inst/include/hfunc.h |only VineCopula-2.1.3/VineCopula/inst/include/incompleteBeta.h |only VineCopula-2.1.3/VineCopula/inst/include/likelihood.h |only VineCopula-2.1.3/VineCopula/inst/include/logderiv.h |only VineCopula-2.1.3/VineCopula/inst/include/memoryhandling.h |only VineCopula-2.1.3/VineCopula/inst/include/pit.h |only VineCopula-2.1.3/VineCopula/inst/include/rvine.h |only VineCopula-2.1.3/VineCopula/inst/include/rvinederiv.h |only VineCopula-2.1.3/VineCopula/inst/include/rvinederiv2.h |only VineCopula-2.1.3/VineCopula/inst/include/tcopuladeriv.h |only VineCopula-2.1.3/VineCopula/inst/include/tcopuladeriv_new.h |only VineCopula-2.1.3/VineCopula/inst/include/tools.h |only VineCopula-2.1.3/VineCopula/inst/include/vine.h |only VineCopula-2.1.4/VineCopula/DESCRIPTION | 7 VineCopula-2.1.4/VineCopula/MD5 | 96 +++++----- VineCopula-2.1.4/VineCopula/NEWS.md | 21 ++ VineCopula-2.1.4/VineCopula/R/BiCopCheck.R | 8 VineCopula-2.1.4/VineCopula/R/BiCopDeriv.R | 4 VineCopula-2.1.4/VineCopula/R/BiCopDeriv2.R | 2 VineCopula-2.1.4/VineCopula/R/BiCopTau2Par.R | 4 VineCopula-2.1.4/VineCopula/R/RVineMLE.R | 111 ++++++------ VineCopula-2.1.4/VineCopula/inst/include/VineCopula |only VineCopula-2.1.4/VineCopula/src/cdvine.c | 10 - VineCopula-2.1.4/VineCopula/src/condsim.c | 8 VineCopula-2.1.4/VineCopula/src/deriv.c | 8 VineCopula-2.1.4/VineCopula/src/deriv2.c | 12 - VineCopula-2.1.4/VineCopula/src/evCopula.c | 4 VineCopula-2.1.4/VineCopula/src/gof.c | 12 - VineCopula-2.1.4/VineCopula/src/hfunc.c | 6 VineCopula-2.1.4/VineCopula/src/hfuncderiv.c | 8 VineCopula-2.1.4/VineCopula/src/hfuncderiv2.c | 10 - VineCopula-2.1.4/VineCopula/src/incompleteBeta.c | 4 VineCopula-2.1.4/VineCopula/src/init.c | 84 ++++++++- VineCopula-2.1.4/VineCopula/src/likelihood.c | 10 - VineCopula-2.1.4/VineCopula/src/logderiv.c | 16 - VineCopula-2.1.4/VineCopula/src/memoryhandling.c | 4 VineCopula-2.1.4/VineCopula/src/pit.c | 10 - VineCopula-2.1.4/VineCopula/src/rvine.c | 10 - VineCopula-2.1.4/VineCopula/src/rvinederiv.c | 16 - VineCopula-2.1.4/VineCopula/src/rvinederiv2.c | 20 +- VineCopula-2.1.4/VineCopula/src/rvinesample.c | 6 VineCopula-2.1.4/VineCopula/src/tcopuladeriv.c | 10 - VineCopula-2.1.4/VineCopula/src/tcopuladeriv_new.c | 14 - VineCopula-2.1.4/VineCopula/src/tools.c | 6 50 files changed, 323 insertions(+), 218 deletions(-)
Title: Unconstrained Optimization using the Subplex Algorithm
Description: The subplex algorithm for unconstrained optimization, developed by Tom Rowan <http://www.netlib.org/opt/subplex.tgz>.
Author: Aaron A. King [aut, trl, cre],
Tom Rowan [aut]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between subplex versions 1.4-1 dated 2017-07-18 and 1.5-2 dated 2018-02-11
subplex-1.4-1/subplex/src/fstats.f |only subplex-1.5-2/subplex/DESCRIPTION | 20 + subplex-1.5-2/subplex/MD5 | 32 +- subplex-1.5-2/subplex/R/subplex.R | 2 subplex-1.5-2/subplex/inst |only subplex-1.5-2/subplex/man/subplex.Rd | 8 subplex-1.5-2/subplex/src/Makevars | 2 subplex-1.5-2/subplex/src/call_subplex.c | 44 ++-- subplex-1.5-2/subplex/src/evalf.f | 54 ---- subplex-1.5-2/subplex/src/partx.f | 9 subplex-1.5-2/subplex/src/setstp.f | 9 subplex-1.5-2/subplex/src/simplx.f | 189 +++++++---------- subplex-1.5-2/subplex/src/subopt.f | 88 -------- subplex-1.5-2/subplex/src/subplx.f | 293 ++++++++++----------------- subplex-1.5-2/subplex/tests/ripple.R | 17 + subplex-1.5-2/subplex/tests/ripple.Rout.save | 29 ++ subplex-1.5-2/subplex/tests/rosen.Rout.save | 4 17 files changed, 321 insertions(+), 479 deletions(-)
Title: Data and Code Behind the Stories and Interactives at
'FiveThirtyEight'
Description: Datasets and code published by the data journalism website
'FiveThirtyEight' available at <https://github.com/fivethirtyeight/data>.
Note that while we received guidance from editors at 'FiveThirtyEight', this
package is not officially published by 'FiveThirtyEight'.
Author: Albert Y. Kim [aut, cre],
Chester Ismay [aut],
Jennifer Chunn [aut],
Meredith Manley [ctb],
Maggie Shea [ctb],
Andrew Flowers [ctb],
Jonathan Bouchet [ctb],
G. Elliott Morris [ctb],
Adam Spannbauer [ctb],
Pradeep Adhokshaja [ctb],
Olivia Barrows [ctb],
Jojo Miller [ctb],
Jayla Nakayama [ctb]
Maintainer: Albert Y. Kim <albert.ys.kim@gmail.com>
Diff between fivethirtyeight versions 0.3.0 dated 2017-08-08 and 0.4.0 dated 2018-02-11
DESCRIPTION | 16 - MD5 | 385 +++++++++++++++---------- NEWS.md | 51 +++ R/data_albert.R | 84 +++-- R/data_chester.R | 460 +++++++++++++++---------------- R/data_jen.R | 51 +-- R/data_maggie.R |only R/data_meredith.R |only build/vignette.rds |binary data/US_births_1994_2003.rda |binary data/US_births_2000_2014.rda |binary data/ahca_polls.rda |only data/airline_safety.rda |binary data/avengers.rda |binary data/bachelorette.rda |only data/bad_drivers.rda |binary data/bechdel.rda |binary data/biopics.rda |binary data/bob_ross.rda |binary data/cand_events_20150114.rda |binary data/cand_events_20150130.rda |binary data/cand_state_20150114.rda |binary data/cand_state_20150130.rda |binary data/candy_rankings.rda |only data/chess_transfers.rda |only data/classic_rock_raw_data.rda |binary data/classic_rock_song_list.rda |binary data/college_all_ages.rda |binary data/college_grad_students.rda |binary data/college_recent_grads.rda |binary data/comic_characters.rda |binary data/comma_survey.rda |binary data/congress_age.rda |binary data/cousin_marriage.rda |binary data/daily_show_guests.rda |binary data/datalist | 32 ++ data/democratic_bench.rda |binary data/drinks.rda |binary data/drug_use.rda |binary data/elo_blatter.rda |binary data/endorsements.rda |binary data/fandango.rda |binary data/fifa_audience.rda |binary data/flying.rda |binary data/food_world_cup.rda |binary data/generic_polllist.rda |only data/generic_topline.rda |only data/google_trends.rda |only data/goose.rda |binary data/hate_crimes.rda |binary data/hiphop_cand_lyrics.rda |binary data/hist_ncaa_bball_casts.rda |binary data/hist_senate_preds.rda |binary data/love_actually_adj.rda |binary data/love_actually_appearance.rda |binary data/mad_men.rda |binary data/male_flight_attend.rda |binary data/mayweather_mcgregor_tweets.rda |only data/mediacloud_hurricanes.rda |only data/mediacloud_online_news.rda |only data/mediacloud_states.rda |only data/mediacloud_trump.rda |only data/mlb_as_play_talent.rda |binary data/mlb_as_team_talent.rda |binary data/mlb_elo.rda |only data/murder_2015_final.rda |binary data/murder_2016_prelim.rda |binary data/nba_carmelo.rda |only data/nba_draft_2015.rda |binary data/nba_tattoos.rda |binary data/nfl_elo.rda |only data/nfl_fandom_google.rda |only data/nfl_fandom_surveymonkey.rda |only data/nfl_fav_team.rda |binary data/nfl_suspensions.rda |binary data/nfltix_div_avgprice.rda |binary data/nfltix_usa_avg.rda |binary data/nflwr_aging_curve.rda |binary data/nflwr_hist.rda |binary data/nutrition_pvalues.rda |binary data/police_deaths.rda |binary data/police_killings.rda |binary data/police_locals.rda |binary data/pres_2016_trail.rda |binary data/pres_commencement.rda |binary data/pulitzer.rda |binary data/ratings.rda |only data/riddler_castles.rda |binary data/riddler_pick_lowest.rda |only data/san_andreas.rda |binary data/sandy_311.rda |only data/senate_polls.rda |binary data/senators.rda |only data/spi_global_rankings.rda |only data/spi_matches.rda |only data/steak_survey.rda |binary data/tarantino.rda |binary data/tennis_events_time.rda |binary data/tennis_players_time.rda |binary data/tennis_serve_time.rda |binary data/tenth_circuit.rda |binary data/trump_approval_poll.rda |only data/trump_approval_trend.rda |only data/trump_news.rda |binary data/trump_twitter.rda |binary data/trumpworld_issues.rda |only data/trumpworld_polls.rda |only data/tv_hurricanes.rda |only data/tv_hurricanes_by_network.rda |only data/tv_states.rda |only data/twitter_presidents.rda |only data/undefeated.rda |only data/unisex_names.rda |binary data/weather_check.rda |binary inst/CITATION |only inst/doc/bechdel.Rmd | 2 inst/doc/bechdel.html | 62 ++-- inst/doc/fivethirtyeight.Rmd | 33 +- inst/doc/fivethirtyeight.html | 377 +++++++++++++++++++++++-- inst/doc/user_contributed_vignettes.R |only inst/doc/user_contributed_vignettes.Rmd |only inst/doc/user_contributed_vignettes.html |only man/US_births_1994_2003.Rd | 2 man/US_births_2000_2014.Rd | 2 man/ahca_polls.Rd |only man/airline_safety.Rd | 2 man/antiquities_act.Rd | 4 man/avengers.Rd | 2 man/bachelorette.Rd |only man/bad_drivers.Rd | 2 man/bechdel.Rd | 4 man/biopics.Rd | 6 man/bob_ross.Rd | 4 man/cand_events_20150114.Rd | 2 man/cand_events_20150130.Rd | 2 man/cand_state_20150114.Rd | 2 man/cand_state_20150130.Rd | 2 man/candy_rankings.Rd |only man/chess_transfers.Rd |only man/classic_rock_raw_data.Rd | 2 man/classic_rock_song_list.Rd | 2 man/college_all_ages.Rd | 4 man/college_grad_students.Rd | 6 man/college_recent_grads.Rd | 4 man/comic_characters.Rd | 4 man/comma_survey.Rd | 4 man/congress_age.Rd | 2 man/daily_show_guests.Rd | 6 man/democratic_bench.Rd | 2 man/drinks.Rd | 4 man/drug_use.Rd | 2 man/elo_blatter.Rd | 2 man/endorsements.Rd | 2 man/fandango.Rd | 2 man/fifa_audience.Rd | 2 man/flying.Rd | 2 man/food_world_cup.Rd | 2 man/generic_polllist.Rd |only man/generic_topline.Rd |only man/google_trends.Rd |only man/goose.Rd | 2 man/hate_crimes.Rd | 24 - man/hiphop_cand_lyrics.Rd | 16 - man/hist_ncaa_bball_casts.Rd | 16 - man/hist_senate_preds.Rd | 12 man/librarians.Rd | 20 - man/love_actually_adj.Rd | 2 man/love_actually_appearance.Rd | 2 man/mad_men.Rd | 32 +- man/male_flight_attend.Rd | 6 man/mayweather_mcgregor_tweets.Rd |only man/mediacloud_hurricanes.Rd |only man/mediacloud_online_news.Rd |only man/mediacloud_states.Rd |only man/mediacloud_trump.Rd |only man/mlb_as_play_talent.Rd | 32 +- man/mlb_as_team_talent.Rd | 34 +- man/mlb_elo.Rd |only man/murder_2015_final.Rd | 12 man/murder_2016_prelim.Rd | 16 - man/nba_carmelo.Rd |only man/nba_draft_2015.Rd | 24 - man/nba_tattoos.Rd | 6 man/nfl_elo.Rd |only man/nfl_fandom_google.Rd |only man/nfl_fandom_surveymonkey.Rd |only man/nfl_fav_team.Rd | 36 +- man/nfl_suspensions.Rd | 16 - man/nfltix_div_avgprice.Rd | 8 man/nfltix_usa_avg.Rd | 6 man/nflwr_aging_curve.Rd | 8 man/nflwr_hist.Rd | 16 - man/nutrition_pvalues.Rd | 10 man/police_deaths.Rd | 14 man/police_killings.Rd | 70 ++-- man/police_locals.Rd | 2 man/pres_2016_trail.Rd | 10 man/pres_commencement.Rd | 2 man/pulitzer.Rd | 4 man/ratings.Rd |only man/riddler_castles2.Rd | 2 man/riddler_pick_lowest.Rd |only man/san_andreas.Rd | 2 man/sandy_311.Rd |only man/senate_polls.Rd | 2 man/senators.Rd |only man/spi_global_rankings.Rd |only man/spi_matches.Rd |only man/steak_survey.Rd | 4 man/tarantino.Rd | 5 man/tennis_events_time.Rd | 2 man/tennis_players_time.Rd | 2 man/tennis_serve_time.Rd | 2 man/trump_approval_poll.Rd |only man/trump_approval_trend.Rd |only man/trump_news.Rd | 2 man/trump_twitter.Rd | 4 man/trumpworld_issues.Rd |only man/trumpworld_polls.Rd |only man/tv_hurricanes.Rd |only man/tv_hurricanes_by_network.Rd |only man/tv_states.Rd |only man/twitter_presidents.Rd |only man/undefeated.Rd |only man/unisex_names.Rd | 2 man/weather_check.Rd | 2 vignettes/bechdel.Rmd | 2 vignettes/fivethirtyeight.Rmd | 33 +- vignettes/user_contributed_vignettes.Rmd |only 229 files changed, 1345 insertions(+), 822 deletions(-)
More information about fivethirtyeight at CRAN
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Title: Datasets for Spatial Analysis
Description: Diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis.
It includes R data of class sf (defined by the package 'sf'), Spatial ('sp'), and nb ('spdep').
Unlike other spatial data packages such as 'rnaturalearth' and 'maps',
it also contains data stored in a range of file formats including GeoJSON, ESRI Shapefile and GeoPackage.
Some of the datasets are designed to illustrate specific analysis techniques.
cycle_hire and cycle_hire_osm, for example, is designed to illustrate point pattern analysis techniques.
Author: Roger Bivand [aut] (<https://orcid.org/0000-0003-2392-6140>),
Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>),
Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between spData versions 0.2.7.0 dated 2018-01-29 and 0.2.7.4 dated 2018-02-11
DESCRIPTION | 10 +++++----- MD5 | 16 +++++++++++----- R/alaska.R |only R/coffee_data.R | 4 ++-- R/hawaii.R |only README.md | 2 ++ data/alaska.rda |only data/datalist | 2 ++ data/hawaii.rda |only man/alaska.Rd |only man/coffee_data.Rd | 4 ++-- man/hawaii.Rd |only 12 files changed, 24 insertions(+), 14 deletions(-)
Title: Rarefaction Tool Kit
Description: Rarefy data, calculate diversity and plot the results.
Author: Paul Saary, Falk Hildebrand
Maintainer: Paul Saary <rtk@paulsaary.de>
Diff between rtk versions 0.2.5.3 dated 2017-07-30 and 0.2.5.4 dated 2018-02-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- build/partial.rdb |binary src/IO.cpp | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Correlation and Regression Analyses for Randomized Response Data
Description: Univariate and multivariate methods to analyze randomized response
(RR) survey designs (e.g., Warner, S. L. (1965). Randomized response: A
survey technique for eliminating evasive answer bias. Journal of the
American Statistical Association, 60, 63–69). <doi:10.2307/2283137>
Besides univariate estimates of true proportions, RR variables can be used
for correlations, as dependent variable in a logistic regression (with or
without random effects), as predictors in a linear regression, or as
dependent variable in a beta-binomial ANOVA. For simulation and bootstrap
purposes, RR data can be generated according to several models.
Author: Daniel W. Heck [aut, cre],
Morten Moshagen [aut]
Maintainer: Daniel W. Heck <heck@uni-mannheim.de>
Diff between RRreg versions 0.6.4 dated 2018-01-05 and 0.6.5 dated 2018-02-11
DESCRIPTION | 11 ++-- MD5 | 10 ++-- NEWS | 2 R/RRmixed.R | 8 ++- inst/doc/RRreg.html | 118 ++++++++++++++++++++++++++-------------------------- man/RRmixed.Rd | 6 ++ 6 files changed, 82 insertions(+), 73 deletions(-)
Title: Interface to 'PHAST' Software for Comparative Genomics
Description: Provides an R interface to the 'PHAST'(<http://compgen.cshl.edu/phast/>) software
(Phylogenetic Analysis with Space/Time Models). It can be used for
many types of analysis in comparative and evolutionary genomics,
such as estimating models of evolution from sequence data, scoring
alignments for conservation or acceleration, and predicting
elements based on conservation or custom phylogenetic hidden Markov
models. It can also perform many basic operations on multiple
sequence alignments and phylogenetic trees.
Author: Melissa Hubisz, Katherine Pollard, and Adam Siepel
Maintainer: Ritika Ramani <rramani@cshl.edu>
Diff between rphast versions 1.6.5 dated 2016-08-15 and 1.6.9 dated 2018-02-11
ChangeLog | 8 ++++++++ DESCRIPTION | 16 ++++++++-------- MD5 | 42 +++++++++++++++++++++--------------------- NAMESPACE | 4 +++- R/bgc.R | 6 +++--- R/feat.R | 2 ++ R/msa.R | 4 +++- inst/doc/vignette1.pdf |binary inst/doc/vignette3.pdf |binary inst/doc/vignette4.pdf |binary inst/examples/phyloFit.R | 6 +++--- inst/extdata/examples.zip |binary man/phyloFit.Rd | 6 +++--- man/rbind.feat.Rd | 2 +- man/rphast-package.Rd | 14 +++++++------- src/Makevars.in | 2 +- src/Makevars.win | 2 +- src/external_libs.h | 2 +- src/rph_init.c | 1 + src/rph_tfbs.c | 22 ++++++++++++++-------- src/sufficient_stats.c | 2 +- src/version | 2 +- 22 files changed, 82 insertions(+), 61 deletions(-)
Title: Linking Geographic Information Systems, Remote Sensing and Other
Command Line Tools
Description: Functions to simplify the linking of open source GIS and remote sensing related command line interfaces.
Author: Tim Appelhans [ctb],
Chris Reudenbach [cre, aut]
Maintainer: Chris Reudenbach <reudenbach@uni-marburg.de>
Diff between link2GI versions 0.2-1 dated 2018-02-06 and 0.3-0 dated 2018-02-11
link2GI-0.2-1/link2GI/R/initControls.R |only link2GI-0.2-1/link2GI/R/linkgdalUtil.R |only link2GI-0.2-1/link2GI/inst/doc/link2GI1.R |only link2GI-0.2-1/link2GI/man/getparams_GRASS4W.Rd |only link2GI-0.2-1/link2GI/man/getparams_GRASS4X.Rd |only link2GI-0.2-1/link2GI/man/linkgdalUtils.Rd |only link2GI-0.2-1/link2GI/man/r_gvec.Rd |only link2GI-0.2-1/link2GI/man/setenv_GRASS4W.Rd |only link2GI-0.2-1/link2GI/man/setenv_OTB.Rd |only link2GI-0.2-1/link2GI/man/w_gvec.Rd |only link2GI-0.3-0/link2GI/DESCRIPTION | 8 - link2GI-0.3-0/link2GI/MD5 | 83 ++++++------ link2GI-0.3-0/link2GI/NAMESPACE | 21 ++- link2GI-0.3-0/link2GI/NEWS | 23 +++ link2GI-0.3-0/link2GI/NEWS.md | 23 +++ link2GI-0.3-0/link2GI/R/grass7Control.R |only link2GI-0.3-0/link2GI/R/initProj.R | 51 +++++-- link2GI-0.3-0/link2GI/R/link2GI-package.R | 8 - link2GI-0.3-0/link2GI/R/link2giKarim.R |only link2GI-0.3-0/link2GI/R/linkGDAL.R |only link2GI-0.3-0/link2GI/R/linkGRASS.R | 46 ++++--- link2GI-0.3-0/link2GI/R/linkOTB.R | 68 +++++++--- link2GI-0.3-0/link2GI/R/linkSAGA.R | 162 +++++++++++++++++-------- link2GI-0.3-0/link2GI/R/otbControls.R |only link2GI-0.3-0/link2GI/R/sagaControl.R |only link2GI-0.3-0/link2GI/R/usefulStuff.R | 36 ++--- link2GI-0.3-0/link2GI/README.md | 10 + link2GI-0.3-0/link2GI/build/vignette.rds |binary link2GI-0.3-0/link2GI/inst/doc/link2GI1.Rmd | 159 +++++++++++++----------- link2GI-0.3-0/link2GI/inst/doc/link2GI1.html | 108 ++++++++-------- link2GI-0.3-0/link2GI/man/add2Path.Rd | 2 link2GI-0.3-0/link2GI/man/checkPCDomain.Rd | 3 link2GI-0.3-0/link2GI/man/findGRASS.Rd |only link2GI-0.3-0/link2GI/man/findOTB.Rd |only link2GI-0.3-0/link2GI/man/findSAGA.Rd |only link2GI-0.3-0/link2GI/man/getSpatialClass.Rd | 3 link2GI-0.3-0/link2GI/man/gvec2sf.Rd |only link2GI-0.3-0/link2GI/man/initProj.Rd | 25 +++ link2GI-0.3-0/link2GI/man/link2GI.Rd | 7 - link2GI-0.3-0/link2GI/man/linkGDAL.Rd |only link2GI-0.3-0/link2GI/man/linkGRASS7.Rd | 16 +- link2GI-0.3-0/link2GI/man/linkOTB.Rd | 8 - link2GI-0.3-0/link2GI/man/linkSAGA.Rd | 45 ++++-- link2GI-0.3-0/link2GI/man/makGlobalVar.Rd | 3 link2GI-0.3-0/link2GI/man/paramGRASSw.Rd |only link2GI-0.3-0/link2GI/man/paramGRASSx.Rd |only link2GI-0.3-0/link2GI/man/searchGRASSW.Rd | 7 - link2GI-0.3-0/link2GI/man/searchGRASSX.Rd | 3 link2GI-0.3-0/link2GI/man/searchOTBW.Rd | 7 - link2GI-0.3-0/link2GI/man/searchOTBX.Rd |only link2GI-0.3-0/link2GI/man/searchSAGAW.Rd | 11 - link2GI-0.3-0/link2GI/man/searchSAGAX.Rd |only link2GI-0.3-0/link2GI/man/setenvGRASSw.Rd |only link2GI-0.3-0/link2GI/man/setenvOTB.Rd |only link2GI-0.3-0/link2GI/man/sf2gvec.Rd |only link2GI-0.3-0/link2GI/vignettes/link2GI1.Rmd | 159 +++++++++++++----------- 56 files changed, 697 insertions(+), 408 deletions(-)
Title: Cryptocurrency Market Data
Description: Retrieves crypto currency current and historical information as well as information on the exchanges they are listed on. For current and historical it will retrieve the daily open, high, low and close values for all crypto currencies. This retrieves the historical market data by web scraping tables provided by 'Cryptocurrency Market Capitalizations' <https://coinmarketcap.com>.
Author: Jesse Vent [aut, cre]
Maintainer: Jesse Vent <jesse@solutiondesign.io>
Diff between crypto versions 0.1.1 dated 2018-01-30 and 0.1.2 dated 2018-02-11
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++++------- NAMESPACE | 3 +++ R/getCoins.R | 7 ++++--- R/getExchanges.R |only R/getPrices.R |only R/listCoins.R | 17 +++++++++++++---- R/scraper.R | 5 ----- README.md | 12 +++++++----- man/getExchanges.Rd |only man/getPrices.Rd |only man/listCoins.Rd | 3 ++- 12 files changed, 46 insertions(+), 31 deletions(-)
Title: Convert Country Names and Country Codes
Description: Standardize country names, convert them into one of
eleven coding schemes, convert between coding schemes, and
assign region descriptors.
Author: Vincent Arel-Bundock [aut, cre],
CJ Yetman [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between countrycode versions 0.19 dated 2017-02-06 and 1.00.0 dated 2018-02-11
countrycode-0.19/countrycode/R/countrycode_data.R |only countrycode-0.19/countrycode/data/countrycode_data.rda |only countrycode-0.19/countrycode/man/countrycode_data.Rd |only countrycode-1.00.0/countrycode/DESCRIPTION | 20 - countrycode-1.00.0/countrycode/MD5 | 24 + countrycode-1.00.0/countrycode/NEWS | 20 + countrycode-1.00.0/countrycode/R/cldr_examples.R |only countrycode-1.00.0/countrycode/R/codelist.R |only countrycode-1.00.0/countrycode/R/codelist_panel.R |only countrycode-1.00.0/countrycode/R/countrycode-package.R | 2 countrycode-1.00.0/countrycode/R/countrycode.R | 200 ++++++++------ countrycode-1.00.0/countrycode/data/cldr_examples.rda |only countrycode-1.00.0/countrycode/data/codelist.rda |only countrycode-1.00.0/countrycode/data/codelist_panel.rda |only countrycode-1.00.0/countrycode/man/cldr_examples.Rd |only countrycode-1.00.0/countrycode/man/codelist.Rd |only countrycode-1.00.0/countrycode/man/codelist_panel.Rd |only countrycode-1.00.0/countrycode/man/countrycode-package.Rd | 9 countrycode-1.00.0/countrycode/man/countrycode.Rd | 55 ++- 19 files changed, 212 insertions(+), 118 deletions(-)
Title: Forecasting Using Smoothing Functions
Description: The set of smoothing functions used for time series analysis and
in forecasting. Currently the package includes exponential smoothing models and
SARIMA in state-space form + several simulation functions.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 2.3.1 dated 2018-01-13 and 2.4.0 dated 2018-02-11
DESCRIPTION | 8 - MD5 | 86 +++++++++--------- NEWS | 33 +++++++ R/RcppExports.R | 4 R/autoces.R | 2 R/autoges.R | 2 R/autossarima.R | 2 R/ces.R | 2 R/es.R | 212 ++++++++++++++++++++++++++++++++-------------- R/ges.R | 4 R/iss.R | 19 +--- R/methods.R | 35 +++++-- R/ssarima.R | 2 R/ssfunctions.R | 125 ++++++++------------------- R/stepwise.R | 15 +++ R/ves.R | 36 ++++--- R/vmethods.R | 23 ++++ R/vssFunctions.R | 131 +++++++++++++++++++++------- README.md | 16 +-- inst/doc/ces.html | 51 +++++------ inst/doc/es.html | 143 +++++++++++++++---------------- inst/doc/ges.html | 20 ++-- inst/doc/simulate.html | 74 ++++++++-------- inst/doc/sma.html | 8 - inst/doc/smooth.html | 4 inst/doc/ssarima.html | 28 +++--- inst/doc/ves.html | 24 ++--- man/auto.ces.Rd | 21 ++-- man/auto.ges.Rd | 23 ++-- man/auto.ssarima.Rd | 37 ++++---- man/ces.Rd | 21 ++-- man/es.Rd | 23 ++-- man/ges.Rd | 21 ++-- man/sim.es.Rd | 2 man/sim.sma.Rd | 2 man/sim.ssarima.Rd | 2 man/smooth.Rd | 2 man/ssarima.Rd | 29 +++--- man/ves.Rd | 21 +++- src/RcppExports.cpp | 7 - src/ssgeneralfun.cpp | 127 ++++++++++++++------------- src/vssGeneral.cpp | 17 ++- tests/testthat/test_es.R | 4 tests/testthat/test_ves.R | 2 44 files changed, 867 insertions(+), 603 deletions(-)
Title: Bi-Directional Interface Between 'R' and 'Scala' with Callbacks
Description: The 'Scala' <http://www.scala-lang.org/> interpreter is embedded in 'R' and callbacks to 'R' from the embedded interpreter are supported. Conversely, the 'R' interpreter is embedded in 'Scala'. 'Scala' versions in the 2.11.x and 2.12.x series are supported.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 2.5.0 dated 2017-11-25 and 2.5.1 dated 2018-02-11
rscala-2.5.0/rscala/R/latest.R |only rscala-2.5.0/rscala/inst/java/scala-2.11/rscala_2.11-2.5.0.jar |only rscala-2.5.0/rscala/inst/java/scala-2.12/rscala_2.12-2.5.0.jar |only rscala-2.5.1/rscala/DESCRIPTION | 10 +-- rscala-2.5.1/rscala/LICENSE | 2 rscala-2.5.1/rscala/MD5 | 31 +++++----- rscala-2.5.1/rscala/NAMESPACE | 1 rscala-2.5.1/rscala/NEWS | 6 + rscala-2.5.1/rscala/R/rscalaOptions.R |only rscala-2.5.1/rscala/R/scala.R | 2 rscala-2.5.1/rscala/R/scalaRequire.R | 2 rscala-2.5.1/rscala/inst/doc/article.Rnw | 4 - rscala-2.5.1/rscala/inst/doc/article.pdf |binary rscala-2.5.1/rscala/inst/java/scala-2.11/rscala_2.11-2.5.1.jar |only rscala-2.5.1/rscala/inst/java/scala-2.12/rscala_2.12-2.5.1.jar |only rscala-2.5.1/rscala/java/rscala-sources.jar |binary rscala-2.5.1/rscala/man/constructor.Rd | 8 +- rscala-2.5.1/rscala/man/rscalaOptions.Rd |only rscala-2.5.1/rscala/man/settings.Rd | 2 rscala-2.5.1/rscala/vignettes/article.Rnw | 4 - 20 files changed, 40 insertions(+), 32 deletions(-)
Title: A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler'
Permissions Checker
Description: Provides functions to download and parse 'robots.txt' files.
Ultimately the package makes it easy to check if bots
(spiders, crawler, scrapers, ...) are allowed to access specific
resources on a domain.
Author: Peter Meissner [aut, cre],
Oliver Keys [ctb],
Rich Fitz John [ctb]
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Diff between robotstxt versions 0.5.2 dated 2017-11-12 and 0.6.0 dated 2018-02-11
robotstxt-0.5.2/robotstxt/R/path_allowed.R |only robotstxt-0.5.2/robotstxt/R/paths_allowed_worker_robotstxt.R |only robotstxt-0.5.2/robotstxt/R/sanitize_permission_values.R |only robotstxt-0.5.2/robotstxt/R/sanitize_permissions.R |only robotstxt-0.5.2/robotstxt/man/path_allowed.Rd |only robotstxt-0.5.2/robotstxt/man/paths_allowed_worker_robotstxt.Rd |only robotstxt-0.5.2/robotstxt/man/sanitize_permission_values.Rd |only robotstxt-0.5.2/robotstxt/man/sanitize_permissions.Rd |only robotstxt-0.5.2/robotstxt/tests/testthat/test_permissions.R |only robotstxt-0.6.0/robotstxt/DESCRIPTION | 8 robotstxt-0.6.0/robotstxt/MD5 | 33 robotstxt-0.6.0/robotstxt/NEWS.md | 8 robotstxt-0.6.0/robotstxt/R/get_robotstxt.R | 7 robotstxt-0.6.0/robotstxt/R/paths_allowed.R | 53 - robotstxt-0.6.0/robotstxt/R/paths_allowed_worker_spiderbar.R | 14 robotstxt-0.6.0/robotstxt/R/robotstxt.R | 7 robotstxt-0.6.0/robotstxt/R/sanitize_path.R | 20 robotstxt-0.6.0/robotstxt/build/vignette.rds |binary robotstxt-0.6.0/robotstxt/inst/doc/using_robotstxt.html | 358 +++++++--- robotstxt-0.6.0/robotstxt/man/paths_allowed.Rd | 15 robotstxt-0.6.0/robotstxt/tests/testthat/test_paths_allowed.R | 107 +- robotstxt-0.6.0/robotstxt/tests/testthat/test_robotstxt.R | 1 22 files changed, 393 insertions(+), 238 deletions(-)
Title: Simultaneous Generation of Multivariate Data with Poisson and
Normal Marginals
Description: Generates multivariate data with count and continuous variables with a pre-specified correlation matrix. The count and continuous variables are assumed to have Poisson and normal marginals, respectively. The data generation mechanism is a combination of the normal to anything principle and a connection between Poisson and normal correlations in the mixture.
Author: Anup Amatya and Hakan Demirtas
Maintainer: Anup Amatya <aamatya@nmsu.edu>
Diff between PoisNor versions 1.1 dated 2016-07-01 and 1.2 dated 2018-02-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/PoisNor-package.Rd | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Concurrent Generation of Ordinal and Normal Data with Given
Correlation Matrix and Marginal Distributions
Description: Implementation of a procedure for generating samples from a mixed distribution of ordinal and normal random variables with pre-specified correlation matrix and marginal distributions.
Author: Anup Amatya and Hakan Demirtas
Maintainer: Anup Amatya<aamatya@nmsu.edu>
Diff between OrdNor versions 2.0 dated 2015-11-24 and 2.1 dated 2018-02-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/OrdNor-package.Rd | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Principal Components Analysis using NIPALS with Gram-Schmidt
Orthogonalization
Description: Principal Components Analysis of a matrix using Non-linear Iterative Partial Least Squares with Gram-Schmidt orthogonalization of the scores and loadings. Optimized for speed. See Andrecut (2009) <doi:10.1089/cmb.2008.0221>.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>)
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between nipals versions 0.3 dated 2017-11-14 and 0.4 dated 2018-02-11
nipals-0.3/nipals/inst/doc/nipals_algorithm.html |only nipals-0.3/nipals/inst/doc/nipals_comparisons.html |only nipals-0.3/nipals/inst/doc/nipals_optimization.html |only nipals-0.4/nipals/DESCRIPTION | 11 +++--- nipals-0.4/nipals/MD5 | 34 ++++++++++---------- nipals-0.4/nipals/R/nipals.R | 8 ++-- nipals-0.4/nipals/build/vignette.rds |binary nipals-0.4/nipals/inst/doc/nipals_algorithm.R | 5 +- nipals-0.4/nipals/inst/doc/nipals_algorithm.Rmd | 22 +++++++----- nipals-0.4/nipals/inst/doc/nipals_algorithm.pdf |only nipals-0.4/nipals/inst/doc/nipals_comparisons.R | 11 +++--- nipals-0.4/nipals/inst/doc/nipals_comparisons.Rmd | 25 ++++++++------ nipals-0.4/nipals/inst/doc/nipals_comparisons.pdf |only nipals-0.4/nipals/inst/doc/nipals_optimization.R | 3 - nipals-0.4/nipals/inst/doc/nipals_optimization.Rmd | 19 ++++------- nipals-0.4/nipals/inst/doc/nipals_optimization.pdf |only nipals-0.4/nipals/tests/testthat/test-misc.R | 25 ++++++++++++++ nipals-0.4/nipals/tests/testthat/test-uscrime.R | 2 - nipals-0.4/nipals/vignettes/nipals_algorithm.Rmd | 22 +++++++----- nipals-0.4/nipals/vignettes/nipals_comparisons.Rmd | 25 ++++++++------ nipals-0.4/nipals/vignettes/nipals_optimization.Rmd | 19 ++++------- 21 files changed, 131 insertions(+), 100 deletions(-)
Title: Generation of Multivariate Ordinal Variates
Description: A method for multivariate ordinal data generation given marginal distributions and correlation matrix based on the methodology proposed by Demirtas (2006).
Author: Anup Amatya and Hakan Demirtas
Maintainer: Anup Amatya <aamatya@nmsu.edu>
Diff between MultiOrd versions 2.2 dated 2016-05-20 and 2.3 dated 2018-02-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/MultiOrd-package.Rd | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Description: High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().
Author: Henrik Bengtsson [aut, cre, cph],
Hector Corrada Bravo [ctb],
Robert Gentleman [ctb],
Ola Hossjer [ctb],
Harris Jaffee [ctb],
Dongcan Jiang [ctb],
Peter Langfelder [ctb],
Peter Hickey [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between matrixStats versions 0.53.0 dated 2018-01-24 and 0.53.1 dated 2018-02-11
DESCRIPTION | 14 +++++----- MD5 | 38 +++++++++++++-------------- NEWS | 21 ++++++++++++++- R/rowLogSumExps.R | 6 ++++ R/rowMads.R | 2 + R/rowQuantiles.R | 9 ++++-- R/rowSds.R | 25 ++++++++--------- R/rowVars.R | 6 ++-- R/sum2.R | 6 +++- R/weightedMedian.R | 53 ++++++++++++++++++++------------------ inst/doc/matrixStats-methods.html | 4 +- man/rowSds.Rd | 19 +++++++------ man/rowVars.Rd | 2 - man/sum2.Rd | 11 +++++-- man/weightedMedian.Rd | 18 +++++++----- src/sum2.c | 2 - tests/rowLogSumExps.R | 10 +++++++ tests/rowQuantiles.R | 8 +++++ tests/rowQuantiles_subset.R | 2 + tests/sum2.R | 4 +- 20 files changed, 164 insertions(+), 96 deletions(-)
Title: Linear Ridge Regression with Ridge Penalty and Ridge Statistics
Description: Linear ridge regression coefficient's estimation and testing with different ridge related measures such as MSE, R-squared etc.
Author: Dr. Muhammad Imdad Ullah, Dr. Muhammad Aslam
Maintainer: Dr. Muhammad Imdad Ullah <mimdadasad@gmail.com>
Diff between lmridge versions 1.0 dated 2016-11-22 and 1.1 dated 2018-02-11
DESCRIPTION | 18 +++--- MD5 | 61 +++++++++++----------- R/bias.plot.R | 59 +++++++++++++++++---- R/cv.plot.R | 46 ++++++++++++++-- R/info.plot.R | 45 +++++++++++++--- R/isrm.plot.R | 35 +++++++++--- R/kest.R | 45 +++++----------- R/plot.lmridge.R | 129 ++++++++++++++++++++++++++++++++++++++--------- R/print.klmridge.R | 1 R/rplots.R | 62 ++++++++++++++-------- R/rstats1.R | 12 +++- R/rstats2.R | 4 - R/summary.lmridge.R | 10 ++- inst |only man/bias.plot.Rd | 9 +-- man/cv.plot.Rd | 14 ++--- man/hatr.Rd | 10 ++- man/info.plot.Rd | 12 ++-- man/infocr.Rd | 8 +- man/isrm.plot.Rd | 8 +- man/kest.Rd | 15 ++--- man/lmridge-package.Rd | 2 man/lmridge.Rd | 12 ++-- man/plot.lmridge.Rd | 16 +++-- man/predict.lmridge.Rd | 12 ++-- man/press.lmridge.Rd | 12 ++-- man/residuals.lmridge.Rd | 10 ++- man/rplots.plot.Rd | 14 ++--- man/rstats1.Rd | 14 ++--- man/rstats2.Rd | 12 ++-- man/summary.lmridge.Rd | 13 ++-- man/vif.Rd | 8 +- 32 files changed, 485 insertions(+), 243 deletions(-)
Title: Spatial Inference using Integrated Nested Laplace Approximation
Description: Facilitates spatial modeling using integrated nested Laplace approximation via the
INLA package (<http://www.r-inla.org>). Additionally, implements a log Gaussian Cox process likelihood for
modeling univariate and spatial point processes based on ecological survey data. See Yuan Yuan,
Fabian E. Bachl, Finn Lindgren, David L. Borchers, Janine B. Illian, Stephen T. Buckland, Havard Rue,
Tim Gerrodette (2017), <arXiv:1604.06013>.
Author: Fabian E. Bachl <bachlfab@gmail.com> (main code),
Finn Lindgren <Finn.Lindgren@ed.ac.uk> (SPDE posterior plotting),
David L. Borchers <dlb@st-andrews.ac.uk> (Gorilla data import and sampling, multiplot tool),
Daniel Simpson <dp.simpson@gmail.com> (basic LGCP sampling method),
Lindesay Scott-Hayward <lass@@st-andrews.ac.uk> (MRSea data import)
Maintainer: Fabian E. Bachl <bachlfab@gmail.com>
Diff between inlabru versions 2.1.2 dated 2017-11-14 and 2.1.3 dated 2018-02-11
DESCRIPTION | 8 +- MD5 | 109 +++++++++++++++++++-------------------- NAMESPACE | 1 R/bru.integration.R | 8 ++ R/bru.spatial.R | 11 ++- R/data.Poisson1_1D.R | 4 - R/data.Poisson2_1D.R | 3 - R/data.Poisson3_1D.R | 4 - R/data.mexdolphin.R | 4 + R/ggplot.R | 34 ++++++++++++ R/mesh.R | 8 +- R/model.R | 1 R/plotsample.R | 7 +- R/sampling.R | 6 +- R/spatstat.R | 2 data/Poisson1_1D.RData |binary data/Poisson2_1D.RData |binary data/Poisson3_1D.RData |binary data/gorillas.RData |binary data/mexdolphin.RData |binary data/mrsea.RData |binary data/seals.RData |binary data/toygroups.RData |binary inst/examples/gg.inla.mesh.R | 2 inst/examples/gg.spatial.R | 2 inst/examples/predict.bru.R | 5 + inst/examples/prediction.bru.R | 3 - man/Poisson1_1D.Rd | 4 - man/Poisson2_1D.Rd | 3 - man/Poisson3_1D.Rd | 4 - man/cprod.Rd | 3 - man/gg.Rd | 3 - man/gg.SpatialGridDataFrame.Rd | 2 man/gg.SpatialLines.Rd | 2 man/gg.SpatialPixelsDataFrame.Rd | 2 man/gg.SpatialPoints.Rd | 2 man/gg.SpatialPolygons.Rd | 2 man/gg.data.frame.Rd | 5 + man/gg.inla.mesh.1d.Rd | 2 man/gg.inla.mesh.Rd | 2 man/gg.matrix.Rd |only man/gg.prediction.Rd | 3 - man/gm.Rd | 3 - man/int.Rd | 3 + man/ipoints.Rd | 2 man/mexdolphin.Rd | 4 + man/pixels.Rd | 4 - man/plotsample.Rd | 3 - man/point2count.Rd | 4 - man/predict.bru.Rd | 5 + man/sample.lgcp.Rd | 4 + man/sline.Rd | 3 - man/spatial.to.ppp.Rd | 2 man/spoly.Rd | 4 - man/stransform.Rd | 4 - man/vertices.inla.mesh.Rd | 4 - 56 files changed, 203 insertions(+), 107 deletions(-)
Title: Leland Wilkinson's Algorithm for Detecting Multidimensional
Outliers
Description: An implementation of an algorithm for outlier detection that can handle a) data with a mixed categorical and continuous variables, b) many columns of data, c) many rows of data, d) outliers that mask other outliers, and e) both unidimensional and multidimensional datasets. Unlike ad hoc methods found in many machine learning papers, HDoutliers is based on a distributional model that uses probabilities to determine outliers. See <https://www.cs.uic.edu/~wilkinson/Publications/outliers.pdf>.
Author: Chris Fraley [aut, cre],
Leland Wilkinson [ctb]
Maintainer: Chris Fraley <cfraley@tableau.com>
Diff between HDoutliers versions 0.15 dated 2016-12-24 and 1.0 dated 2018-02-11
CHANGELOG | 5 ++++- DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++---------- NAMESPACE | 2 +- R/HDoutliers.R | 34 +++++++--------------------------- R/dataTrans.R |only R/getHDoutliers.R | 9 +++++++-- R/plotHDoutliers.R | 8 ++++++-- man/HDoutliers.Rd | 16 +++++++++++++--- man/dataTrans.Rd |only man/getHDmembers.Rd | 4 ++-- man/getHDoutliers.Rd | 16 ++++++++++++---- man/plotHDoutliers.Rd | 16 +++++++++++++--- 13 files changed, 81 insertions(+), 59 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multiprocess)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, on in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implements additional backends for
processing futures via compute cluster schedulers etc.
Because of its unified API, there is no need to modify code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.6.2 dated 2017-10-16 and 1.7.0 dated 2018-02-11
future-1.6.2/future/R/DEPRECATED.R |only future-1.6.2/future/R/FutureError-class.R |only future-1.6.2/future/man/FutureError.Rd |only future-1.6.2/future/tests/DEPRECATED_DEFUNCT.R |only future-1.7.0/future/DESCRIPTION | 8 future-1.7.0/future/MD5 | 115 ++++---- future-1.7.0/future/NAMESPACE | 16 - future-1.7.0/future/NEWS | 127 +++++++- future-1.7.0/future/R/ClusterFuture-class.R | 16 - future-1.7.0/future/R/Future-class.R | 2 future-1.7.0/future/R/FutureCondition-class.R |only future-1.7.0/future/R/FutureEvaluationCondition-class.R |only future-1.7.0/future/R/UniprocessFuture-class.R | 50 +-- future-1.7.0/future/R/cluster.R | 4 future-1.7.0/future/R/fold.R |only future-1.7.0/future/R/future.R | 2 future-1.7.0/future/R/future_lapply.R | 28 + future-1.7.0/future/R/globals.R | 14 future-1.7.0/future/R/globals_OP.R | 26 + future-1.7.0/future/R/makeClusterPSOCK.R | 46 ++- future-1.7.0/future/R/multicore.R | 6 future-1.7.0/future/R/multisession.R | 5 future-1.7.0/future/R/nbrOfWorkers.R | 8 future-1.7.0/future/R/options.R | 5 future-1.7.0/future/R/remote.R | 1 future-1.7.0/future/R/signalEarly.R | 8 future-1.7.0/future/R/tweak.R | 9 future-1.7.0/future/R/utils.R | 230 +++++++++++----- future-1.7.0/future/R/uuid.R |only future-1.7.0/future/R/zzz.R | 4 future-1.7.0/future/R/zzz.plan.R | 51 +-- future-1.7.0/future/build/vignette.rds |binary future-1.7.0/future/inst/doc/future-1-overview.html | 4 future-1.7.0/future/inst/doc/future-1-overview.md.rsp | 4 future-1.7.0/future/inst/doc/future-2-issues.html | 185 +++++++++++- future-1.7.0/future/inst/doc/future-2-issues.md.rsp | 181 ++++++++++-- future-1.7.0/future/man/FutureCondition.Rd |only future-1.7.0/future/man/FutureEvaluationCondition.Rd |only future-1.7.0/future/man/UniprocessFuture-class.Rd | 24 - future-1.7.0/future/man/cluster.Rd | 2 future-1.7.0/future/man/find_references.Rd |only future-1.7.0/future/man/fold.Rd |only future-1.7.0/future/man/future.Rd | 2 future-1.7.0/future/man/future.options.Rd | 5 future-1.7.0/future/man/future_lapply.Rd | 13 future-1.7.0/future/man/grapes-globals-grapes.Rd | 14 future-1.7.0/future/man/makeClusterPSOCK.Rd | 20 - future-1.7.0/future/man/multicore.Rd | 2 future-1.7.0/future/man/multisession.Rd | 2 future-1.7.0/future/man/nullcon.Rd |only future-1.7.0/future/man/plan.Rd | 24 + future-1.7.0/future/man/remote.Rd | 2 future-1.7.0/future/man/sequential.Rd | 16 - future-1.7.0/future/tests/cluster.R | 4 future-1.7.0/future/tests/fold.R |only future-1.7.0/future/tests/future_lapply,RNG.R | 37 ++ future-1.7.0/future/tests/future_lapply.R | 1 future-1.7.0/future/tests/globals,manual.R | 71 ++++ future-1.7.0/future/tests/globals,tricky.R | 25 + future-1.7.0/future/tests/incl/start,load-only.R | 5 future-1.7.0/future/tests/nbrOfWorkers.R | 19 + future-1.7.0/future/tests/non-exportable,connections.R |only future-1.7.0/future/tests/utils.R | 51 +++ future-1.7.0/future/tests/uuid.R | 17 + future-1.7.0/future/vignettes/future-1-overview.md.rsp | 4 future-1.7.0/future/vignettes/future-2-issues.md.rsp | 181 ++++++++++-- 66 files changed, 1309 insertions(+), 387 deletions(-)
Title: Extending 'dendrogram' Functionality in R
Description: Offers a set of functions for extending
'dendrogram' objects in R, letting you visualize and compare trees of
'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different 'dendrograms' to one another.
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com),
Gavin Simpson [ctb],
Gregory Jefferis [aut, ctb] (imported code from his dendroextras
package),
Marco Gallotta [ctb] (a.k.a: marcog),
Johan Renaudie [ctb] (https://github.com/plannapus),
The R Core Team [ctb] (Thanks for the Infastructure, and code in the
examples),
Kurt Hornik [ctb],
Uwe Ligges [ctb],
Andrej-Nikolai Spiess [ctb],
Steve Horvath [ctb],
Peter Langfelder [ctb],
skullkey [ctb],
Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram),
Andrie de Vries [ctb] (ggdendro author),
Zuguang Gu [ctb] (circlize author),
Cath [ctb] (https://github.com/CathG),
John Ma [ctb] (https://github.com/JohnMCMa),
Krzysiek G [ctb] (https://github.com/storaged),
Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between dendextend versions 1.6.0 dated 2017-11-13 and 1.7.0 dated 2018-02-11
ChangeLog | 53 +++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 20 ++++++++------ MD5 | 35 +++++++++++++------------ NAMESPACE | 2 + NEWS | 16 +++++++++++ NEWS.md | 16 +++++++++++ R/color_branches.R | 7 ++++- R/get_subdendrograms.R |only R/seriate_dendrogram.R | 32 +++++++++++------------ inst/doc/Cluster_Analysis.html | 4 +- inst/doc/FAQ.html | 4 +- inst/doc/Quick_Introduction.html | 4 +- inst/doc/introduction.R | 36 ++++++++++++++------------ inst/doc/introduction.Rmd | 34 ++++++++++++++----------- inst/doc/introduction.html | 46 ++++++++++++++++----------------- man/color_branches.Rd | 7 ++++- man/find_dendrogram.Rd |only man/get_subdendrograms.Rd |only man/seriate_dendrogram.Rd | 4 +- vignettes/introduction.Rmd | 34 ++++++++++++++----------- 20 files changed, 236 insertions(+), 118 deletions(-)
Title: Call R from R
Description: It is sometimes useful to perform a computation in a
separate R process, without affecting the current R process at all.
This packages does exactly that.
Author: Gábor Csárdi, Winston Chang
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between callr versions 2.0.1 dated 2018-01-30 and 2.0.2 dated 2018-02-11
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 10 ++++++++++ R/result.R | 11 +++++++---- src/win/stdio.c | 26 ++++++++++++++++++++++++-- 5 files changed, 48 insertions(+), 13 deletions(-)
Title: High-Throughput Generation of Genetic Markers and Maps from
Molecular Phenotypes for Crosses Between Inbred Strains
Description: High-throughput generation of genetic markers from molecular phenotypes for crosses between inbred strains. These markers can be use to saturate existing genetic map or creating a new one.
Author: Konrad Zych <k.zych@rug.nl> and Danny Arends <danny.arends@gmail.com>
Maintainer: Konrad Zych <k.zych@rug.nl>
Diff between pheno2geno versions 1.3.1 dated 2015-03-25 and 1.4.0 dated 2018-02-11
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- NAMESPACE | 5 ++++- README.md | 15 ++++++++------- man/changeChromNumber.rd | 38 +++++++++++++++++++------------------- 5 files changed, 41 insertions(+), 36 deletions(-)
Title: Run 'roxygen2' on (Chunks of) Single Code Files
Description: Have you ever been tempted to create 'roxygen2'-style documentation
comments for one of your functions that was not part of one of your
packages (yet)?
This is exactly what this package is about: running 'roxygen2' on
(chunks of) a single code file.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <adc-r@arcor.de>
Diff between document versions 2.2.1 dated 2018-01-13 and 3.0.0 dated 2018-02-11
document-2.2.1/document/inst/tests |only document-2.2.1/document/tests/expected_files |only document-2.2.1/document/tests/files |only document-2.2.1/document/tests/runit |only document-3.0.0/document/DESCRIPTION | 11 document-3.0.0/document/MD5 | 132 +- document-3.0.0/document/NAMESPACE | 4 document-3.0.0/document/NEWS.md | 17 document-3.0.0/document/R/document-package.R | 2 document-3.0.0/document/R/document.R | 35 document-3.0.0/document/R/internals.R | 19 document-3.0.0/document/R/man.R | 23 document-3.0.0/document/R/package_functions.R | 66 - document-3.0.0/document/R/utils.R | 11 document-3.0.0/document/README.md | 2 document-3.0.0/document/inst/doc/Introduction_to_document.R | 8 document-3.0.0/document/inst/doc/Introduction_to_document.Rmd | 18 document-3.0.0/document/inst/doc/Introduction_to_document.html | 446 ++-------- document-3.0.0/document/inst/expected_files |only document-3.0.0/document/inst/files |only document-3.0.0/document/inst/runit |only document-3.0.0/document/man/Rd_txt_RUnit.Rd | 1 document-3.0.0/document/man/alter_description_file.Rd | 4 document-3.0.0/document/man/check_package.Rd | 10 document-3.0.0/document/man/checks.Rd |only document-3.0.0/document/man/clean_description_file.Rd | 3 document-3.0.0/document/man/display_Rd.Rd | 1 document-3.0.0/document/man/document-package.Rd | 2 document-3.0.0/document/man/document.Rd | 15 document-3.0.0/document/man/fake_package.Rd | 3 document-3.0.0/document/man/is_Rd_file.Rd | 1 document-3.0.0/document/man/man.Rd | 14 document-3.0.0/document/man/sort_unlocale.Rd | 1 document-3.0.0/document/man/usage.Rd | 3 document-3.0.0/document/man/write_the_docs.Rd | 9 document-3.0.0/document/tests/runit.R | 2 document-3.0.0/document/tests/testthat/fixme_test_check.txt |only document-3.0.0/document/tests/testthat/test_basic.R | 184 ---- document-3.0.0/document/tests/testthat/test_check.R |only document-3.0.0/document/tests/testthat/test_parse.R |only document-3.0.0/document/vignettes/Introduction_to_document.Rmd | 18 41 files changed, 388 insertions(+), 677 deletions(-)
Title: Mock the Unix Make Utility
Description: Use R as a minimal build system. This might come in handy
if you are developing R packages and can not use a proper build
system. Stay away if you can (use a proper build system).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@arcor.de>
Diff between fakemake versions 1.1.0 dated 2018-01-26 and 1.2.0 dated 2018-02-11
DESCRIPTION | 6 ++-- MD5 | 10 +++--- NEWS.md | 5 +++ R/main.R | 1 R/package_makelist.R | 20 ++++++++++++- inst/doc/An_Introduction_to_fakemake.html | 44 +++++++++++++++--------------- 6 files changed, 55 insertions(+), 31 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-11 0.0.6
Title: Tools to Quickly and Neatly Summarize Data
Description: Data frame summaries, cross-tabulations,
weight-enabled frequency tables and common univariate
statistics in concise tables available in a variety of
formats (plain ASCII, Markdown and HTML). A good
point-of-entry for exploring data, both for experienced
and new R users.
Author: Dominic Comtois
Maintainer: Dominic Comtois <dominic.comtois@gmail.com>
Diff between summarytools versions 0.8.1 dated 2018-01-14 and 0.8.2 dated 2018-02-11
COPYING | 680 ++++++++++++++++---------------- DESCRIPTION | 14 MD5 | 16 NEWS | 11 R/dfSummary.R | 66 ++- R/parse_args.R | 6 R/print.summarytools.R | 13 inst/doc/Introduction.html | 4 inst/doc/Recommendations-rmarkdown.html | 14 9 files changed, 443 insertions(+), 381 deletions(-)