Sun, 11 Feb 2018

Package scoring updated to version 0.6 with previous version 0.5-1 dated 2014-07-01

Title: Proper Scoring Rules
Description: Evaluating probabilistic forecasts via proper scoring rules. scoring implements the beta, power, and pseudospherical families of proper scoring rules, along with ordered versions of the latter two families. Included among these families are popular rules like the Brier (quadratic) score, logarithmic score, and spherical score. For two-alternative forecasts, also includes functionality for plotting scores that one would obtain under specific scoring rules.
Author: Ed Merkle
Maintainer: Ed Merkle <merklee@missouri.edu>

Diff between scoring versions 0.5-1 dated 2014-07-01 and 0.6 dated 2018-02-11

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Package wnominate updated to version 1.2.5 with previous version 1.2.2 dated 2018-02-04

Title: Multidimensional Vote Scaling Software
Description: Estimates W-NOMINATE scores using parliamentary voting data (Poole et al 2007) <doi:10.18637/jss.v042.i14> supplied though a 'rollcall' object from package 'pscl'.
Author: Keith Poole <ktpoole@uga.edu>, Jeffrey Lewis <jblewis@ucla.edu>, James Lo <lojames@usc.edu> and Royce Carroll <rcarroll@rice.edu>
Maintainer: James Lo <lojames@usc.edu>

Diff between wnominate versions 1.2.2 dated 2018-02-04 and 1.2.5 dated 2018-02-11

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Package rentrez updated to version 1.2.0 with previous version 1.1.0 dated 2017-05-31

Title: Entrez in R
Description: Provides an R interface to the NCBI's EUtils API allowing users to search databases like GenBank and PubMed, process the results of those searches and pull data into their R sessions.
Author: David Winter [aut, cre] (ORCID = 0000-0002-6165-0029), Scott Chamberlain [ctb] (ORCID = 0000-0003-1444-9135), Han Guangchun [ctb] (ORCID = 0000-0001-9277-2507)
Maintainer: David Winter <david.winter@gmail.com>

Diff between rentrez versions 1.1.0 dated 2017-05-31 and 1.2.0 dated 2018-02-11

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Package textir updated to version 2.0-5 with previous version 2.0-4 dated 2015-08-18

Title: Inverse Regression for Text Analysis
Description: Multinomial (inverse) regression inference for text documents and associated attributes. For details see: Taddy (2013 JASA) Multinomial Inverse Regression for Text Analysis <arXiv:1012.2098> and Taddy (2015, AoAS), Distributed Multinomial Regression, <arXiv:1311.6139>. A minimalist partial least squares routine is also included. Note that the topic modeling capability of earlier 'textir' is now a separate package, 'maptpx'.
Author: Matt Taddy <mataddy@gmail.com>
Maintainer: Matt Taddy <mataddy@gmail.com>

Diff between textir versions 2.0-4 dated 2015-08-18 and 2.0-5 dated 2018-02-11

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New package Rraven with initial version 1.0.1
Type: Package
Package: Rraven
Title: Connecting R and 'Raven' Sound Analysis Software
Version: 1.0.1
Date: 2018-02-11
Author: Marcelo Araya-Salas
Maintainer: Marcelo Araya-Salas <araya-salas@cornell.edu>
Description: A tool to exchange data between R and 'Raven' sound analysis software <http://www.birds.cornell.edu/brp/raven/RavenOverview.html> (Cornell Lab of Ornithology). Functions work on data formats compatible with the R package 'warbleR'.
License: GPL (>= 2)
Imports: pbapply, warbleR, utils, stats, vegan, dplyr,kableExtra
Depends: R (>= 3.2.1)
LazyData: TRUE
URL: https://github.com/maRce10/Rraven
BugReports: https://github.com/maRce10/Rraven/issues
NeedsCompilation: no
Suggests: knitr
VignetteBuilder: knitr
RoxygenNote: 6.0.1
Packaged: 2018-02-11 19:07:42 UTC; m
Repository: CRAN
Date/Publication: 2018-02-11 21:01:17 UTC

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Package rorcid updated to version 0.4.0 with previous version 0.3.0 dated 2016-09-21

Title: Interface to the 'Orcid.org' 'API'
Description: Client for the 'Orcid.org' 'API' (<https://orcid.org/>). Functions included for searching for people, searching by 'DOI', and searching by 'Orcid' 'ID'.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between rorcid versions 0.3.0 dated 2016-09-21 and 0.4.0 dated 2018-02-11

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Package NAM updated to version 1.5.5 with previous version 1.5.4 dated 2017-10-17

Title: Nested Association Mapping
Description: Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) <doi:10.1093/bioinformatics/btv448>. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.
Author: Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Maintainer: Alencar Xavier <alenxav@gmail.com>

Diff between NAM versions 1.5.4 dated 2017-10-17 and 1.5.5 dated 2018-02-11

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Package implyr updated to version 0.2.2 with previous version 0.2.1 dated 2017-06-27

Title: R Interface for Apache Impala
Description: 'SQL' back-end to 'dplyr' for Apache Impala, the massively parallel processing query engine for Apache 'Hadoop'. Impala enables low-latency 'SQL' queries on data stored in the 'Hadoop' Distributed File System '(HDFS)', Apache 'HBase', Apache 'Kudu', and Amazon Simple Storage Service '(S3)'. See <https://impala.apache.org> for more information about Impala.
Author: Ian Cook [aut, cre], Cloudera [cph]
Maintainer: Ian Cook <ian@cloudera.com>

Diff between implyr versions 0.2.1 dated 2017-06-27 and 0.2.2 dated 2018-02-11

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New package histry with initial version 0.1.1
Package: histry
Type: Package
Title: Enhanced Command History Tracking for R Sessions and Dynamic Documents
Version: 0.1.1
Date: 2018-02-08
Authors@R: person("Gabriel", "Becker", role = c("aut", "cre"), email = "becker.gabriel@gene.com")
Copyright: Genentech Inc
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Description: Automatically tracks and makes programmatically available code evaluation history in R sessions and dynamic documents.
License: Artistic-2.0
Depends: methods
Suggests: CodeDepends, rmarkdown, knitr, trackr
Imports: fastdigest, evaluate
VignetteBuilder: knitr
Collate: '00first.R' 'allClasses.R' 'history.R' 'tracking.R' 'zzz.R'
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-02-09 16:44:57 UTC; beckerg4
Author: Gabriel Becker [aut, cre]
Repository: CRAN
Date/Publication: 2018-02-11 21:10:37 UTC

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Package gamlr updated to version 1.13-4 with previous version 1.13-3 dated 2015-08-26

Title: Gamma Lasso Regression
Description: The gamma lasso algorithm provides regularization paths corresponding to a range of non-convex cost functions between L0 and L1 norms. As much as possible, usage for this package is analogous to that for the glmnet package (which does the same thing for penalization between L1 and L2 norms). For details see: Taddy (2017 JCGS), One-Step Estimator Paths for Concave Regularization, <arXiv:1308.5623>.
Author: Matt Taddy <mataddy@gmail.com>
Maintainer: Matt Taddy <mataddy@gmail.com>

Diff between gamlr versions 1.13-3 dated 2015-08-26 and 1.13-4 dated 2018-02-11

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Package estimability updated to version 1.3 with previous version 1.2 dated 2016-11-19

Title: Tools for Assessing Estimability of Linear Predictions
Description: Provides tools for determining estimability of linear functions of regression coefficients, and 'epredict' methods that handle non-estimable cases correctly. Estimability theory is discussed in many linear-models textbooks including Chapter 3 of Monahan, JF (2008), "A Primer on Linear Models", Chapman and Hall (ISBN 978-1-4200-6201-4).
Author: Russell Lenth [aut, cre, cph]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>

Diff between estimability versions 1.2 dated 2016-11-19 and 1.3 dated 2018-02-11

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Package distrom updated to version 1.0 with previous version 0.3-3 dated 2015-08-18

Title: Distributed Multinomial Regression
Description: Fast distributed/parallel estimation for multinomial logistic regression via Poisson factorization and the 'gamlr' package. For details see: Taddy (2015, AoAS), Distributed Multinomial Regression, <arXiv:1311.6139>.
Author: Matt Taddy <mataddy@gmail.com>
Maintainer: Matt Taddy <mataddy@gmail.com>

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Package MomTrunc updated to version 1.41 with previous version 1.37 dated 2018-01-05

Title: Moments of Folded and Doubly Truncated Multivariate Distributions
Description: It computes the raw moments for the folded and truncated multivariate normal and Student's t-distribution. It also offers specific functions to compute the mean and variance-covariance matrix as well as the cumulative distribution function (cdf) for the folded normal and folded t-distribution. Algorithms are extensions based on Kan, R., & Robotti, C. (2017) <doi:10.1080/10618600.2017.1322092>.
Author: Christian E. Galarza, Victor H. Lachos
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>

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Package VineCopula updated to version 2.1.4 with previous version 2.1.3 dated 2017-08-15

Title: Statistical Inference of Vine Copulas
Description: Provides tools for the statistical analysis of vine copula models. The package includes tools for parameter estimation, model selection, simulation, goodness-of-fit tests, and visualization. Tools for estimation, selection and exploratory data analysis of bivariate copula models are also provided.
Author: Ulf Schepsmeier [aut], Jakob Stoeber [aut], Eike Christian Brechmann [aut], Benedikt Graeler [aut], Thomas Nagler [aut, cre], Tobias Erhardt [aut], Carlos Almeida [ctb], Aleksey Min [ctb, ths], Claudia Czado [ctb, ths], Mathias Hofmann [ctb], Matthias Killiches [ctb], Harry Joe [ctb], Thibault Vatter [ctb]
Maintainer: Thomas Nagler <thomas.nagler@tum.de>

Diff between VineCopula versions 2.1.3 dated 2017-08-15 and 2.1.4 dated 2018-02-11

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 VineCopula-2.1.3/VineCopula/inst/include/tools.h            |only
 VineCopula-2.1.3/VineCopula/inst/include/vine.h             |only
 VineCopula-2.1.4/VineCopula/DESCRIPTION                     |    7 
 VineCopula-2.1.4/VineCopula/MD5                             |   96 +++++-----
 VineCopula-2.1.4/VineCopula/NEWS.md                         |   21 ++
 VineCopula-2.1.4/VineCopula/R/BiCopCheck.R                  |    8 
 VineCopula-2.1.4/VineCopula/R/BiCopDeriv.R                  |    4 
 VineCopula-2.1.4/VineCopula/R/BiCopDeriv2.R                 |    2 
 VineCopula-2.1.4/VineCopula/R/BiCopTau2Par.R                |    4 
 VineCopula-2.1.4/VineCopula/R/RVineMLE.R                    |  111 ++++++------
 VineCopula-2.1.4/VineCopula/inst/include/VineCopula         |only
 VineCopula-2.1.4/VineCopula/src/cdvine.c                    |   10 -
 VineCopula-2.1.4/VineCopula/src/condsim.c                   |    8 
 VineCopula-2.1.4/VineCopula/src/deriv.c                     |    8 
 VineCopula-2.1.4/VineCopula/src/deriv2.c                    |   12 -
 VineCopula-2.1.4/VineCopula/src/evCopula.c                  |    4 
 VineCopula-2.1.4/VineCopula/src/gof.c                       |   12 -
 VineCopula-2.1.4/VineCopula/src/hfunc.c                     |    6 
 VineCopula-2.1.4/VineCopula/src/hfuncderiv.c                |    8 
 VineCopula-2.1.4/VineCopula/src/hfuncderiv2.c               |   10 -
 VineCopula-2.1.4/VineCopula/src/incompleteBeta.c            |    4 
 VineCopula-2.1.4/VineCopula/src/init.c                      |   84 ++++++++-
 VineCopula-2.1.4/VineCopula/src/likelihood.c                |   10 -
 VineCopula-2.1.4/VineCopula/src/logderiv.c                  |   16 -
 VineCopula-2.1.4/VineCopula/src/memoryhandling.c            |    4 
 VineCopula-2.1.4/VineCopula/src/pit.c                       |   10 -
 VineCopula-2.1.4/VineCopula/src/rvine.c                     |   10 -
 VineCopula-2.1.4/VineCopula/src/rvinederiv.c                |   16 -
 VineCopula-2.1.4/VineCopula/src/rvinederiv2.c               |   20 +-
 VineCopula-2.1.4/VineCopula/src/rvinesample.c               |    6 
 VineCopula-2.1.4/VineCopula/src/tcopuladeriv.c              |   10 -
 VineCopula-2.1.4/VineCopula/src/tcopuladeriv_new.c          |   14 -
 VineCopula-2.1.4/VineCopula/src/tools.c                     |    6 
 50 files changed, 323 insertions(+), 218 deletions(-)

More information about VineCopula at CRAN
Permanent link

Package subplex updated to version 1.5-2 with previous version 1.4-1 dated 2017-07-18

Title: Unconstrained Optimization using the Subplex Algorithm
Description: The subplex algorithm for unconstrained optimization, developed by Tom Rowan <http://www.netlib.org/opt/subplex.tgz>.
Author: Aaron A. King [aut, trl, cre], Tom Rowan [aut]
Maintainer: Aaron A. King <kingaa@umich.edu>

Diff between subplex versions 1.4-1 dated 2017-07-18 and 1.5-2 dated 2018-02-11

 subplex-1.4-1/subplex/src/fstats.f           |only
 subplex-1.5-2/subplex/DESCRIPTION            |   20 +
 subplex-1.5-2/subplex/MD5                    |   32 +-
 subplex-1.5-2/subplex/R/subplex.R            |    2 
 subplex-1.5-2/subplex/inst                   |only
 subplex-1.5-2/subplex/man/subplex.Rd         |    8 
 subplex-1.5-2/subplex/src/Makevars           |    2 
 subplex-1.5-2/subplex/src/call_subplex.c     |   44 ++--
 subplex-1.5-2/subplex/src/evalf.f            |   54 ----
 subplex-1.5-2/subplex/src/partx.f            |    9 
 subplex-1.5-2/subplex/src/setstp.f           |    9 
 subplex-1.5-2/subplex/src/simplx.f           |  189 +++++++----------
 subplex-1.5-2/subplex/src/subopt.f           |   88 --------
 subplex-1.5-2/subplex/src/subplx.f           |  293 ++++++++++-----------------
 subplex-1.5-2/subplex/tests/ripple.R         |   17 +
 subplex-1.5-2/subplex/tests/ripple.Rout.save |   29 ++
 subplex-1.5-2/subplex/tests/rosen.Rout.save  |    4 
 17 files changed, 321 insertions(+), 479 deletions(-)

More information about subplex at CRAN
Permanent link

New package ggfortify with initial version 0.4.2
Package: ggfortify
Type: Package
Title: Data Visualization Tools for Statistical Analysis Results
Version: 0.4.2
Date: 2018-02-10
Authors@R: c( person("Masaaki", "Horikoshi", role = c("aut"), email = "sinhrks@gmail.com"), person("Yuan", "Tang", role = c("aut", "cre"), email = "terrytangyuan@gmail.com"), person("Austin", "Dickey", role = c("ctb")), person("Matthias", "Grenié", role = c("ctb")), person("Ryan", "Thompson", role = c("ctb")), person("Luciano", "Selzer", role = c("ctb")), person("Dario", "Strbenac", role = c("ctb")), person("Kirill", "Voronin", role = c("ctb")) )
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
URL: https://github.com/sinhrks/ggfortify
BugReports: https://github.com/sinhrks/ggfortify/issues
Encoding: UTF-8
Description: Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'.
License: GPL-2
VignetteBuilder: knitr
Depends: methods, ggplot2 (>= 2.0.0)
Imports: dplyr (>= 0.3), tidyr, gridExtra, grid, scales, stringr, tibble
Suggests: testthat, cluster, changepoint, dlm, fGarch, forecast, ggrepel, glmnet, grDevices, KFAS, knitr, lintr, mapdata, MASS, MSwM, nlme, raster, ROCR, sp, stats, strucchange, survival, timeSeries, tseries, utils, vars, xts, zoo, lfda
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-02-11 16:58:29 UTC; terrytangyuan
Author: Masaaki Horikoshi [aut], Yuan Tang [aut, cre], Austin Dickey [ctb], Matthias Grenié [ctb], Ryan Thompson [ctb], Luciano Selzer [ctb], Dario Strbenac [ctb], Kirill Voronin [ctb]
Repository: CRAN
Date/Publication: 2018-02-11 17:16:23 UTC

More information about ggfortify at CRAN
Permanent link

Package fivethirtyeight updated to version 0.4.0 with previous version 0.3.0 dated 2017-08-08

Title: Data and Code Behind the Stories and Interactives at 'FiveThirtyEight'
Description: Datasets and code published by the data journalism website 'FiveThirtyEight' available at <https://github.com/fivethirtyeight/data>. Note that while we received guidance from editors at 'FiveThirtyEight', this package is not officially published by 'FiveThirtyEight'.
Author: Albert Y. Kim [aut, cre], Chester Ismay [aut], Jennifer Chunn [aut], Meredith Manley [ctb], Maggie Shea [ctb], Andrew Flowers [ctb], Jonathan Bouchet [ctb], G. Elliott Morris [ctb], Adam Spannbauer [ctb], Pradeep Adhokshaja [ctb], Olivia Barrows [ctb], Jojo Miller [ctb], Jayla Nakayama [ctb]
Maintainer: Albert Y. Kim <albert.ys.kim@gmail.com>

Diff between fivethirtyeight versions 0.3.0 dated 2017-08-08 and 0.4.0 dated 2018-02-11

 DESCRIPTION                              |   16 -
 MD5                                      |  385 +++++++++++++++----------
 NEWS.md                                  |   51 +++
 R/data_albert.R                          |   84 +++--
 R/data_chester.R                         |  460 +++++++++++++++----------------
 R/data_jen.R                             |   51 +--
 R/data_maggie.R                          |only
 R/data_meredith.R                        |only
 build/vignette.rds                       |binary
 data/US_births_1994_2003.rda             |binary
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 data/avengers.rda                        |binary
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 data/biopics.rda                         |binary
 data/bob_ross.rda                        |binary
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 data/cand_events_20150130.rda            |binary
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 data/classic_rock_song_list.rda          |binary
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 data/college_recent_grads.rda            |binary
 data/comic_characters.rda                |binary
 data/comma_survey.rda                    |binary
 data/congress_age.rda                    |binary
 data/cousin_marriage.rda                 |binary
 data/daily_show_guests.rda               |binary
 data/datalist                            |   32 ++
 data/democratic_bench.rda                |binary
 data/drinks.rda                          |binary
 data/drug_use.rda                        |binary
 data/elo_blatter.rda                     |binary
 data/endorsements.rda                    |binary
 data/fandango.rda                        |binary
 data/fifa_audience.rda                   |binary
 data/flying.rda                          |binary
 data/food_world_cup.rda                  |binary
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 data/goose.rda                           |binary
 data/hate_crimes.rda                     |binary
 data/hiphop_cand_lyrics.rda              |binary
 data/hist_ncaa_bball_casts.rda           |binary
 data/hist_senate_preds.rda               |binary
 data/love_actually_adj.rda               |binary
 data/love_actually_appearance.rda        |binary
 data/mad_men.rda                         |binary
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 data/mlb_as_play_talent.rda              |binary
 data/mlb_as_team_talent.rda              |binary
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 data/nfl_elo.rda                         |only
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 data/nfl_fandom_surveymonkey.rda         |only
 data/nfl_fav_team.rda                    |binary
 data/nfl_suspensions.rda                 |binary
 data/nfltix_div_avgprice.rda             |binary
 data/nfltix_usa_avg.rda                  |binary
 data/nflwr_aging_curve.rda               |binary
 data/nflwr_hist.rda                      |binary
 data/nutrition_pvalues.rda               |binary
 data/police_deaths.rda                   |binary
 data/police_killings.rda                 |binary
 data/police_locals.rda                   |binary
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 data/senate_polls.rda                    |binary
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 data/spi_global_rankings.rda             |only
 data/spi_matches.rda                     |only
 data/steak_survey.rda                    |binary
 data/tarantino.rda                       |binary
 data/tennis_events_time.rda              |binary
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 data/tenth_circuit.rda                   |binary
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 data/trump_approval_trend.rda            |only
 data/trump_news.rda                      |binary
 data/trump_twitter.rda                   |binary
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 data/tv_hurricanes.rda                   |only
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 data/unisex_names.rda                    |binary
 data/weather_check.rda                   |binary
 inst/CITATION                            |only
 inst/doc/bechdel.Rmd                     |    2 
 inst/doc/bechdel.html                    |   62 ++--
 inst/doc/fivethirtyeight.Rmd             |   33 +-
 inst/doc/fivethirtyeight.html            |  377 +++++++++++++++++++++++--
 inst/doc/user_contributed_vignettes.R    |only
 inst/doc/user_contributed_vignettes.Rmd  |only
 inst/doc/user_contributed_vignettes.html |only
 man/US_births_1994_2003.Rd               |    2 
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 man/airline_safety.Rd                    |    2 
 man/antiquities_act.Rd                   |    4 
 man/avengers.Rd                          |    2 
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 man/bad_drivers.Rd                       |    2 
 man/bechdel.Rd                           |    4 
 man/biopics.Rd                           |    6 
 man/bob_ross.Rd                          |    4 
 man/cand_events_20150114.Rd              |    2 
 man/cand_events_20150130.Rd              |    2 
 man/cand_state_20150114.Rd               |    2 
 man/cand_state_20150130.Rd               |    2 
 man/candy_rankings.Rd                    |only
 man/chess_transfers.Rd                   |only
 man/classic_rock_raw_data.Rd             |    2 
 man/classic_rock_song_list.Rd            |    2 
 man/college_all_ages.Rd                  |    4 
 man/college_grad_students.Rd             |    6 
 man/college_recent_grads.Rd              |    4 
 man/comic_characters.Rd                  |    4 
 man/comma_survey.Rd                      |    4 
 man/congress_age.Rd                      |    2 
 man/daily_show_guests.Rd                 |    6 
 man/democratic_bench.Rd                  |    2 
 man/drinks.Rd                            |    4 
 man/drug_use.Rd                          |    2 
 man/elo_blatter.Rd                       |    2 
 man/endorsements.Rd                      |    2 
 man/fandango.Rd                          |    2 
 man/fifa_audience.Rd                     |    2 
 man/flying.Rd                            |    2 
 man/food_world_cup.Rd                    |    2 
 man/generic_polllist.Rd                  |only
 man/generic_topline.Rd                   |only
 man/google_trends.Rd                     |only
 man/goose.Rd                             |    2 
 man/hate_crimes.Rd                       |   24 -
 man/hiphop_cand_lyrics.Rd                |   16 -
 man/hist_ncaa_bball_casts.Rd             |   16 -
 man/hist_senate_preds.Rd                 |   12 
 man/librarians.Rd                        |   20 -
 man/love_actually_adj.Rd                 |    2 
 man/love_actually_appearance.Rd          |    2 
 man/mad_men.Rd                           |   32 +-
 man/male_flight_attend.Rd                |    6 
 man/mayweather_mcgregor_tweets.Rd        |only
 man/mediacloud_hurricanes.Rd             |only
 man/mediacloud_online_news.Rd            |only
 man/mediacloud_states.Rd                 |only
 man/mediacloud_trump.Rd                  |only
 man/mlb_as_play_talent.Rd                |   32 +-
 man/mlb_as_team_talent.Rd                |   34 +-
 man/mlb_elo.Rd                           |only
 man/murder_2015_final.Rd                 |   12 
 man/murder_2016_prelim.Rd                |   16 -
 man/nba_carmelo.Rd                       |only
 man/nba_draft_2015.Rd                    |   24 -
 man/nba_tattoos.Rd                       |    6 
 man/nfl_elo.Rd                           |only
 man/nfl_fandom_google.Rd                 |only
 man/nfl_fandom_surveymonkey.Rd           |only
 man/nfl_fav_team.Rd                      |   36 +-
 man/nfl_suspensions.Rd                   |   16 -
 man/nfltix_div_avgprice.Rd               |    8 
 man/nfltix_usa_avg.Rd                    |    6 
 man/nflwr_aging_curve.Rd                 |    8 
 man/nflwr_hist.Rd                        |   16 -
 man/nutrition_pvalues.Rd                 |   10 
 man/police_deaths.Rd                     |   14 
 man/police_killings.Rd                   |   70 ++--
 man/police_locals.Rd                     |    2 
 man/pres_2016_trail.Rd                   |   10 
 man/pres_commencement.Rd                 |    2 
 man/pulitzer.Rd                          |    4 
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 man/spi_matches.Rd                       |only
 man/steak_survey.Rd                      |    4 
 man/tarantino.Rd                         |    5 
 man/tennis_events_time.Rd                |    2 
 man/tennis_players_time.Rd               |    2 
 man/tennis_serve_time.Rd                 |    2 
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 man/trump_news.Rd                        |    2 
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 man/unisex_names.Rd                      |    2 
 man/weather_check.Rd                     |    2 
 vignettes/bechdel.Rmd                    |    2 
 vignettes/fivethirtyeight.Rmd            |   33 +-
 vignettes/user_contributed_vignettes.Rmd |only
 229 files changed, 1345 insertions(+), 822 deletions(-)

More information about fivethirtyeight at CRAN
Permanent link

New package autoplotly with initial version 0.1.1
Package: autoplotly
Type: Package
Title: Automatic Generation of Interactive Visualizations for Popular Statistical Results
Version: 0.1.1
Authors@R: person("Yuan", "Tang", role = c("aut", "cre"), email = "terrytangyuan@gmail.com")
Description: Functionalities to automatically generate interactive visualizations for popular statistical results supported by 'ggfortify', such as time series, PCA, clustering and survival analysis, with 'plotly.js' <https://plot.ly/> and 'ggplot2' style. The generated visualizations can also be easily extended using 'ggplot2' and 'plotly' syntax while staying interactive.
License: Apache License 2.0
URL: https://github.com/terrytangyuan/autoplotly
BugReports: https://github.com/terrytangyuan/autoplotly/issues
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.1)
Imports: methods, ggplot2, plotly, ggfortify
RoxygenNote: 6.0.1
Suggests: testthat, knitr
NeedsCompilation: no
Packaged: 2018-02-11 17:18:22 UTC; terrytangyuan
Author: Yuan Tang [aut, cre]
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
Repository: CRAN
Date/Publication: 2018-02-11 17:36:06 UTC

More information about autoplotly at CRAN
Permanent link

New package warbleR with initial version 1.1.10
Package: warbleR
Type: Package
Title: Streamline Bioacoustic Analysis
Version: 1.1.10
Date: 2018-01-28
Author: Marcelo Araya-Salas & Grace Smith Vidaurre
Maintainer: Marcelo Araya-Salas <araya-salas@cornell.edu>
Description: A tool to streamline the analysis of animal acoustic signal structure. The package offers functions for downloading avian vocalizations from the open-access online repository 'Xeno-Canto' <http://xeno-canto.org/>, displaying the geographic extent of the recordings, manipulating sound files, detecting acoustic signals, assessing performance of methods that measure acoustic similarity, conducting cross-correlations, dynamic time warping, measuring acoustic parameters and analysing interactive vocal signals, among others. Most functions working iteratively allow parallelization to improve computational efficiency.
License: GPL (>= 2)
Imports: bitops, doParallel, dtw, fftw, foreach, graphics, grDevices, iterators, jpeg, monitoR, parallel, pbapply, pbmcapply, proxy, RCurl, rjson, stats, signal, utils, methods
Depends: R (>= 3.2.1), maps, tuneR, seewave (>= 2.0.1), NatureSounds
LazyData: TRUE
URL: https://github.com/maRce10/warbleR
BugReports: https://github.com/maRce10/warbleR/issues
NeedsCompilation: no
Suggests: knitr, ggplot2, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 6.0.1
Packaged: 2018-02-10 15:53:13 UTC; m
Repository: CRAN
Date/Publication: 2018-02-11 15:37:12 UTC

More information about warbleR at CRAN
Permanent link

Package spData updated to version 0.2.7.4 with previous version 0.2.7.0 dated 2018-01-29

Title: Datasets for Spatial Analysis
Description: Diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis. It includes R data of class sf (defined by the package 'sf'), Spatial ('sp'), and nb ('spdep'). Unlike other spatial data packages such as 'rnaturalearth' and 'maps', it also contains data stored in a range of file formats including GeoJSON, ESRI Shapefile and GeoPackage. Some of the datasets are designed to illustrate specific analysis techniques. cycle_hire and cycle_hire_osm, for example, is designed to illustrate point pattern analysis techniques.
Author: Roger Bivand [aut] (<https://orcid.org/0000-0003-2392-6140>), Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>), Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>

Diff between spData versions 0.2.7.0 dated 2018-01-29 and 0.2.7.4 dated 2018-02-11

 DESCRIPTION        |   10 +++++-----
 MD5                |   16 +++++++++++-----
 R/alaska.R         |only
 R/coffee_data.R    |    4 ++--
 R/hawaii.R         |only
 README.md          |    2 ++
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 man/coffee_data.Rd |    4 ++--
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 12 files changed, 24 insertions(+), 14 deletions(-)

More information about spData at CRAN
Permanent link

New package snappier with initial version 0.1.0
Package: snappier
Title: Compress and Decompress 'Snappy' Encoded Data
Version: 0.1.0
Authors@R: c( person("Huw", "Campbell", email = "huw.campbell@gmail.com", role = c("aut", "cre")) , person("Jeff", "Dean", role = "ctb") , person("Sanjay", "Ghemawat", role = "ctb") , person("Steinar", "Gunderson", role = "ctb") , person("Martin", "Gieseking", email = "martin.gieseking@uos.de", role = "ctb") , person("Google Inc.", role = "cph") )
Description: Compression and decompression with 'Snappy'.
Depends: R (>= 3.3.0)
License: BSD_3_clause + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: testthat
NeedsCompilation: yes
Packaged: 2018-02-08 09:50:59 UTC; hcampbell
Author: Huw Campbell [aut, cre], Jeff Dean [ctb], Sanjay Ghemawat [ctb], Steinar Gunderson [ctb], Martin Gieseking [ctb], Google Inc. [cph]
Maintainer: Huw Campbell <huw.campbell@gmail.com>
Repository: CRAN
Date/Publication: 2018-02-11 15:27:41 UTC

More information about snappier at CRAN
Permanent link

Package rtk updated to version 0.2.5.4 with previous version 0.2.5.3 dated 2017-07-30

Title: Rarefaction Tool Kit
Description: Rarefy data, calculate diversity and plot the results.
Author: Paul Saary, Falk Hildebrand
Maintainer: Paul Saary <rtk@paulsaary.de>

Diff between rtk versions 0.2.5.3 dated 2017-07-30 and 0.2.5.4 dated 2018-02-11

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Package RRreg updated to version 0.6.5 with previous version 0.6.4 dated 2018-01-05

Title: Correlation and Regression Analyses for Randomized Response Data
Description: Univariate and multivariate methods to analyze randomized response (RR) survey designs (e.g., Warner, S. L. (1965). Randomized response: A survey technique for eliminating evasive answer bias. Journal of the American Statistical Association, 60, 63–69). <doi:10.2307/2283137> Besides univariate estimates of true proportions, RR variables can be used for correlations, as dependent variable in a logistic regression (with or without random effects), as predictors in a linear regression, or as dependent variable in a beta-binomial ANOVA. For simulation and bootstrap purposes, RR data can be generated according to several models.
Author: Daniel W. Heck [aut, cre], Morten Moshagen [aut]
Maintainer: Daniel W. Heck <heck@uni-mannheim.de>

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Package rphast updated to version 1.6.9 with previous version 1.6.5 dated 2016-08-15

Title: Interface to 'PHAST' Software for Comparative Genomics
Description: Provides an R interface to the 'PHAST'(<http://compgen.cshl.edu/phast/>) software (Phylogenetic Analysis with Space/Time Models). It can be used for many types of analysis in comparative and evolutionary genomics, such as estimating models of evolution from sequence data, scoring alignments for conservation or acceleration, and predicting elements based on conservation or custom phylogenetic hidden Markov models. It can also perform many basic operations on multiple sequence alignments and phylogenetic trees.
Author: Melissa Hubisz, Katherine Pollard, and Adam Siepel
Maintainer: Ritika Ramani <rramani@cshl.edu>

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Package link2GI updated to version 0.3-0 with previous version 0.2-1 dated 2018-02-06

Title: Linking Geographic Information Systems, Remote Sensing and Other Command Line Tools
Description: Functions to simplify the linking of open source GIS and remote sensing related command line interfaces.
Author: Tim Appelhans [ctb], Chris Reudenbach [cre, aut]
Maintainer: Chris Reudenbach <reudenbach@uni-marburg.de>

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New package lakemorpho with initial version 1.1.1
Package: lakemorpho
Type: Package
Title: Lake Morphometry Metrics
Version: 1.1.1
Authors@R: c( person(given = "Jeffrey W.", family = "Hollister", role = c("aut","cre"), email = "hollister.jeff@epa.gov"), person(given = "Joseph", family = "Stachelek", role = "ctb") )
URL: http://www.github.com/jhollist/lakemorpho
BugReports: https://www.github.com/jhollist/lakemorpho/issues
Maintainer: Jeffrey W. Hollister <hollister.jeff@epa.gov>
License: CC0
Description: Lake morphometry metrics are used by limnologists to understand, among other things, the ecological processes in a lake. Traditionally, these metrics are calculated by hand, with planimeters, and increasingly with commercial GIS products. All of these methods work; however, they are either outdated, difficult to reproduce, or require expensive licenses to use. The 'lakemorpho' package provides the tools to calculate a typical suite of these metrics from an input elevation model and lake polygon. The metrics currently supported are: fetch, major axis, minor axis, major/minor axis ratio, maximum length, maximum width, mean width, maximum depth, mean depth, shoreline development, shoreline length, surface area, and volume.
Depends: R (>= 3.0.0)
Imports: methods, stats, grDevices, rgdal, raster, rgeos, sp, geosphere, cluster
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-02-09 22:03:17 UTC; jhollist
Author: Jeffrey W. Hollister [aut, cre], Joseph Stachelek [ctb]
Repository: CRAN
Date/Publication: 2018-02-11 14:45:57 UTC

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Package crypto updated to version 0.1.2 with previous version 0.1.1 dated 2018-01-30

Title: Cryptocurrency Market Data
Description: Retrieves crypto currency current and historical information as well as information on the exchanges they are listed on. For current and historical it will retrieve the daily open, high, low and close values for all crypto currencies. This retrieves the historical market data by web scraping tables provided by 'Cryptocurrency Market Capitalizations' <https://coinmarketcap.com>.
Author: Jesse Vent [aut, cre]
Maintainer: Jesse Vent <jesse@solutiondesign.io>

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Package countrycode updated to version 1.00.0 with previous version 0.19 dated 2017-02-06

Title: Convert Country Names and Country Codes
Description: Standardize country names, convert them into one of eleven coding schemes, convert between coding schemes, and assign region descriptors.
Author: Vincent Arel-Bundock [aut, cre], CJ Yetman [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>

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Package smooth updated to version 2.4.0 with previous version 2.3.1 dated 2018-01-13

Title: Forecasting Using Smoothing Functions
Description: The set of smoothing functions used for time series analysis and in forecasting. Currently the package includes exponential smoothing models and SARIMA in state-space form + several simulation functions.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>

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Package rscala updated to version 2.5.1 with previous version 2.5.0 dated 2017-11-25

Title: Bi-Directional Interface Between 'R' and 'Scala' with Callbacks
Description: The 'Scala' <http://www.scala-lang.org/> interpreter is embedded in 'R' and callbacks to 'R' from the embedded interpreter are supported. Conversely, the 'R' interpreter is embedded in 'Scala'. 'Scala' versions in the 2.11.x and 2.12.x series are supported.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>

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Package robotstxt updated to version 0.6.0 with previous version 0.5.2 dated 2017-11-12

Title: A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler' Permissions Checker
Description: Provides functions to download and parse 'robots.txt' files. Ultimately the package makes it easy to check if bots (spiders, crawler, scrapers, ...) are allowed to access specific resources on a domain.
Author: Peter Meissner [aut, cre], Oliver Keys [ctb], Rich Fitz John [ctb]
Maintainer: Peter Meissner <retep.meissner@gmail.com>

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Package PoisNor updated to version 1.2 with previous version 1.1 dated 2016-07-01

Title: Simultaneous Generation of Multivariate Data with Poisson and Normal Marginals
Description: Generates multivariate data with count and continuous variables with a pre-specified correlation matrix. The count and continuous variables are assumed to have Poisson and normal marginals, respectively. The data generation mechanism is a combination of the normal to anything principle and a connection between Poisson and normal correlations in the mixture.
Author: Anup Amatya and Hakan Demirtas
Maintainer: Anup Amatya <aamatya@nmsu.edu>

Diff between PoisNor versions 1.1 dated 2016-07-01 and 1.2 dated 2018-02-11

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Package OrdNor updated to version 2.1 with previous version 2.0 dated 2015-11-24

Title: Concurrent Generation of Ordinal and Normal Data with Given Correlation Matrix and Marginal Distributions
Description: Implementation of a procedure for generating samples from a mixed distribution of ordinal and normal random variables with pre-specified correlation matrix and marginal distributions.
Author: Anup Amatya and Hakan Demirtas
Maintainer: Anup Amatya<aamatya@nmsu.edu>

Diff between OrdNor versions 2.0 dated 2015-11-24 and 2.1 dated 2018-02-11

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Package nipals updated to version 0.4 with previous version 0.3 dated 2017-11-14

Title: Principal Components Analysis using NIPALS with Gram-Schmidt Orthogonalization
Description: Principal Components Analysis of a matrix using Non-linear Iterative Partial Least Squares with Gram-Schmidt orthogonalization of the scores and loadings. Optimized for speed. See Andrecut (2009) <doi:10.1089/cmb.2008.0221>.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>)
Maintainer: Kevin Wright <kw.stat@gmail.com>

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Package MultiOrd updated to version 2.3 with previous version 2.2 dated 2016-05-20

Title: Generation of Multivariate Ordinal Variates
Description: A method for multivariate ordinal data generation given marginal distributions and correlation matrix based on the methodology proposed by Demirtas (2006).
Author: Anup Amatya and Hakan Demirtas
Maintainer: Anup Amatya <aamatya@nmsu.edu>

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Package matrixStats updated to version 0.53.1 with previous version 0.53.0 dated 2018-01-24

Title: Functions that Apply to Rows and Columns of Matrices (and to Vectors)
Description: High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().
Author: Henrik Bengtsson [aut, cre, cph], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Dongcan Jiang [ctb], Peter Langfelder [ctb], Peter Hickey [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

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Package lmridge updated to version 1.1 with previous version 1.0 dated 2016-11-22

Title: Linear Ridge Regression with Ridge Penalty and Ridge Statistics
Description: Linear ridge regression coefficient's estimation and testing with different ridge related measures such as MSE, R-squared etc.
Author: Dr. Muhammad Imdad Ullah, Dr. Muhammad Aslam
Maintainer: Dr. Muhammad Imdad Ullah <mimdadasad@gmail.com>

Diff between lmridge versions 1.0 dated 2016-11-22 and 1.1 dated 2018-02-11

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Package inlabru updated to version 2.1.3 with previous version 2.1.2 dated 2017-11-14

Title: Spatial Inference using Integrated Nested Laplace Approximation
Description: Facilitates spatial modeling using integrated nested Laplace approximation via the INLA package (<http://www.r-inla.org>). Additionally, implements a log Gaussian Cox process likelihood for modeling univariate and spatial point processes based on ecological survey data. See Yuan Yuan, Fabian E. Bachl, Finn Lindgren, David L. Borchers, Janine B. Illian, Stephen T. Buckland, Havard Rue, Tim Gerrodette (2017), <arXiv:1604.06013>.
Author: Fabian E. Bachl <bachlfab@gmail.com> (main code), Finn Lindgren <Finn.Lindgren@ed.ac.uk> (SPDE posterior plotting), David L. Borchers <dlb@st-andrews.ac.uk> (Gorilla data import and sampling, multiplot tool), Daniel Simpson <dp.simpson@gmail.com> (basic LGCP sampling method), Lindesay Scott-Hayward <lass@@st-andrews.ac.uk> (MRSea data import)
Maintainer: Fabian E. Bachl <bachlfab@gmail.com>

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Package HDoutliers updated to version 1.0 with previous version 0.15 dated 2016-12-24

Title: Leland Wilkinson's Algorithm for Detecting Multidimensional Outliers
Description: An implementation of an algorithm for outlier detection that can handle a) data with a mixed categorical and continuous variables, b) many columns of data, c) many rows of data, d) outliers that mask other outliers, and e) both unidimensional and multidimensional datasets. Unlike ad hoc methods found in many machine learning papers, HDoutliers is based on a distributional model that uses probabilities to determine outliers. See <https://www.cs.uic.edu/~wilkinson/Publications/outliers.pdf>.
Author: Chris Fraley [aut, cre], Leland Wilkinson [ctb]
Maintainer: Chris Fraley <cfraley@tableau.com>

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Package future updated to version 1.7.0 with previous version 1.6.2 dated 2017-10-16

Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and unified Future API for sequential and parallel processing of R expression via futures. The simplest way to evaluate an expression in parallel is to use `x %<-% { expression }` with `plan(multiprocess)`. This package implements sequential, multicore, multisession, and cluster futures. With these, R expressions can be evaluated on the local machine, on in parallel a set of local machines, or distributed on a mix of local and remote machines. Extensions to this package implements additional backends for processing futures via compute cluster schedulers etc. Because of its unified API, there is no need to modify code in order switch from sequential on the local machine to, say, distributed processing on a remote compute cluster. Another strength of this package is that global variables and functions are automatically identified and exported as needed, making it straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

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Package dendextend updated to version 1.7.0 with previous version 1.6.0 dated 2017-11-13

Title: Extending 'dendrogram' Functionality in R
Description: Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), John Ma [ctb] (https://github.com/JohnMCMa), Krzysiek G [ctb] (https://github.com/storaged), Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>

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Package callr updated to version 2.0.2 with previous version 2.0.1 dated 2018-01-30

Title: Call R from R
Description: It is sometimes useful to perform a computation in a separate R process, without affecting the current R process at all. This packages does exactly that.
Author: Gábor Csárdi, Winston Chang
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>

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Package pheno2geno updated to version 1.4.0 with previous version 1.3.1 dated 2015-03-25

Title: High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains
Description: High-throughput generation of genetic markers from molecular phenotypes for crosses between inbred strains. These markers can be use to saturate existing genetic map or creating a new one.
Author: Konrad Zych <k.zych@rug.nl> and Danny Arends <danny.arends@gmail.com>
Maintainer: Konrad Zych <k.zych@rug.nl>

Diff between pheno2geno versions 1.3.1 dated 2015-03-25 and 1.4.0 dated 2018-02-11

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Package document updated to version 3.0.0 with previous version 2.2.1 dated 2018-01-13

Title: Run 'roxygen2' on (Chunks of) Single Code Files
Description: Have you ever been tempted to create 'roxygen2'-style documentation comments for one of your functions that was not part of one of your packages (yet)? This is exactly what this package is about: running 'roxygen2' on (chunks of) a single code file.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <adc-r@arcor.de>

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Package fakemake updated to version 1.2.0 with previous version 1.1.0 dated 2018-01-26

Title: Mock the Unix Make Utility
Description: Use R as a minimal build system. This might come in handy if you are developing R packages and can not use a proper build system. Stay away if you can (use a proper build system).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@arcor.de>

Diff between fakemake versions 1.1.0 dated 2018-01-26 and 1.2.0 dated 2018-02-11

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Package schwartz97 (with last version 0.0.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-02-11 0.0.6

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Package summarytools updated to version 0.8.2 with previous version 0.8.1 dated 2018-01-14

Title: Tools to Quickly and Neatly Summarize Data
Description: Data frame summaries, cross-tabulations, weight-enabled frequency tables and common univariate statistics in concise tables available in a variety of formats (plain ASCII, Markdown and HTML). A good point-of-entry for exploring data, both for experienced and new R users.
Author: Dominic Comtois
Maintainer: Dominic Comtois <dominic.comtois@gmail.com>

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