Title: The Tail-Rank Statistic
Description: Implements the tail-rank statistic for selecting biomarkers
from a microarray data set, an efficient nonparametric test focused
on the distributional tails. See
<http://bioinformatics.mdanderson.org/TailRank/tolstoy-new.pdf>.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between TailRank versions 3.1.3 dated 2017-07-11 and 3.2.0 dated 2018-02-14
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NEWS | 12 +++++++++++- R/beta-binomial.R | 10 ++++++++-- build/vignette.rds |binary inst/doc/betabinomial.pdf |binary inst/doc/tailrank.pdf |binary man/tr06-beta-binomial.Rd | 3 ++- tests |only 9 files changed, 34 insertions(+), 15 deletions(-)
Title: Eye-Tracking Data Analysis
Description: A set of tools that address tasks along the pipeline from raw
data to analysis and visualization for eye-tracking data. Offers several
popular types of analyses, including linear and growth curve time analyses,
onset-contingent reaction time analyses, as well as several non-parametric
bootstrapping approaches.
Author: Jacob Dink [aut, cre],
Brock Ferguson [aut]
Maintainer: Jacob Dink <jacobwdink@gmail.com>
Diff between eyetrackingR versions 0.1.6 dated 2016-03-17 and 0.1.7 dated 2018-02-14
eyetrackingR-0.1.6/eyetrackingR/man/filter_.Rd |only eyetrackingR-0.1.6/eyetrackingR/man/group_by_.Rd |only eyetrackingR-0.1.6/eyetrackingR/man/left_join.Rd |only eyetrackingR-0.1.6/eyetrackingR/man/mutate_.Rd |only eyetrackingR-0.1.6/eyetrackingR/man/subset.Rd |only eyetrackingR-0.1.6/eyetrackingR/man/ungroup.Rd |only eyetrackingR-0.1.7/eyetrackingR/DESCRIPTION | 16 eyetrackingR-0.1.7/eyetrackingR/MD5 | 146 +-- eyetrackingR-0.1.7/eyetrackingR/NAMESPACE | 74 - eyetrackingR-0.1.7/eyetrackingR/NEWS.md | 5 eyetrackingR-0.1.7/eyetrackingR/R/data_prep.R | 244 ++--- eyetrackingR-0.1.7/eyetrackingR/R/dplyr_fix.R |only eyetrackingR-0.1.7/eyetrackingR/R/eyetrackingR.R | 4 eyetrackingR-0.1.7/eyetrackingR/R/helpers.R | 426 ---------- eyetrackingR-0.1.7/eyetrackingR/R/onset_contingent_data.R | 4 eyetrackingR-0.1.7/eyetrackingR/R/time_cluster_data.R | 4 eyetrackingR-0.1.7/eyetrackingR/R/time_sequence_data.R | 12 eyetrackingR-0.1.7/eyetrackingR/R/time_spline_data.R | 4 eyetrackingR-0.1.7/eyetrackingR/R/time_window_data.R | 4 eyetrackingR-0.1.7/eyetrackingR/README.md | 4 eyetrackingR-0.1.7/eyetrackingR/build/vignette.rds |binary eyetrackingR-0.1.7/eyetrackingR/inst/doc/divergence_vignette.R | 7 eyetrackingR-0.1.7/eyetrackingR/inst/doc/divergence_vignette.Rmd | 19 eyetrackingR-0.1.7/eyetrackingR/inst/doc/divergence_vignette.html | 128 +-- eyetrackingR-0.1.7/eyetrackingR/inst/doc/growth_curve_analysis_vignette.Rmd | 4 eyetrackingR-0.1.7/eyetrackingR/inst/doc/growth_curve_analysis_vignette.html | 127 +- eyetrackingR-0.1.7/eyetrackingR/inst/doc/onset_contingent_analysis_vignette.Rmd | 4 eyetrackingR-0.1.7/eyetrackingR/inst/doc/onset_contingent_analysis_vignette.html | 75 - eyetrackingR-0.1.7/eyetrackingR/inst/doc/preparing_your_data_vignette.R | 14 eyetrackingR-0.1.7/eyetrackingR/inst/doc/preparing_your_data_vignette.Rmd | 20 eyetrackingR-0.1.7/eyetrackingR/inst/doc/preparing_your_data_vignette.html | 134 +-- eyetrackingR-0.1.7/eyetrackingR/inst/doc/window_analysis_vignette.R | 10 eyetrackingR-0.1.7/eyetrackingR/inst/doc/window_analysis_vignette.Rmd | 14 eyetrackingR-0.1.7/eyetrackingR/inst/doc/window_analysis_vignette.html | 174 ++-- eyetrackingR-0.1.7/eyetrackingR/man/add_aoi.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/analyze_boot_splines.Rd | 2 eyetrackingR-0.1.7/eyetrackingR/man/analyze_time_bins.Rd | 2 eyetrackingR-0.1.7/eyetrackingR/man/analyze_time_clusters.Rd | 2 eyetrackingR-0.1.7/eyetrackingR/man/clean_by_trackloss.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/describe_data.Rd | 6 eyetrackingR-0.1.7/eyetrackingR/man/eyetrackingR.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/get_time_clusters.Rd | 2 eyetrackingR-0.1.7/eyetrackingR/man/make_boot_splines_data.Rd | 2 eyetrackingR-0.1.7/eyetrackingR/man/make_eyetrackingr_data.Rd | 3 eyetrackingR-0.1.7/eyetrackingR/man/make_onset_data.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/make_switch_data.Rd | 2 eyetrackingR-0.1.7/eyetrackingR/man/make_time_cluster_data.Rd | 2 eyetrackingR-0.1.7/eyetrackingR/man/make_time_sequence_data.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/make_time_window_data.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/plot.bin_analysis.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/plot.boot_splines_analysis.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/plot.boot_splines_data.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/plot.cluster_analysis.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/plot.eyetrackingR_data_summary.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/plot.onset_data.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/plot.switch_data.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/plot.time_cluster_data.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/plot.time_sequence_data.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/plot.time_window_data.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/print.cluster_analysis.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/reclass.Rd |only eyetrackingR-0.1.7/eyetrackingR/man/simulate_eyetrackingr_data.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/subset_by_window.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/summary.bin_analysis.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/summary.boot_splines_analysis.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/summary.cluster_analysis.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/summary.time_cluster_data.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/trackloss_analysis.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/man/word_recognition.Rd | 1 eyetrackingR-0.1.7/eyetrackingR/tests/testthat/test_analyze_time_bins.R | 4 eyetrackingR-0.1.7/eyetrackingR/tests/testthat/test_arbitrary_dv.R | 4 eyetrackingR-0.1.7/eyetrackingR/tests/testthat/test_cluster_analysis.R | 18 eyetrackingR-0.1.7/eyetrackingR/tests/testthat/test_time_sequence_data.R | 2 eyetrackingR-0.1.7/eyetrackingR/vignettes/divergence_vignette.Rmd | 19 eyetrackingR-0.1.7/eyetrackingR/vignettes/growth_curve_analysis_vignette.Rmd | 4 eyetrackingR-0.1.7/eyetrackingR/vignettes/onset_contingent_analysis_vignette.Rmd | 4 eyetrackingR-0.1.7/eyetrackingR/vignettes/preparing_your_data_vignette.Rmd | 20 eyetrackingR-0.1.7/eyetrackingR/vignettes/window_analysis_vignette.Rmd | 14 78 files changed, 704 insertions(+), 1110 deletions(-)
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
Author: Rahul Satija [aut],
Andrew Butler [aut],
Paul Hoffman [aut, cre],
Jeff Farrell [ctb],
Shiwei Zheng [ctb],
Christoph Hafemeister [ctb],
Patrick Roelli [ctb]
Maintainer: Paul Hoffman <seuratpackage@gmail.com>
Diff between Seurat versions 2.2.0 dated 2018-01-10 and 2.2.1 dated 2018-02-14
DESCRIPTION | 14 +++++++------- MD5 | 20 ++++++++++---------- NAMESPACE | 2 +- NEWS.md | 5 +++++ R/alignment.R | 3 ++- R/differential_expression.R | 25 +++++++++++++------------ R/dimensional_reduction.R | 16 ++++++++++++++++ R/plotting_utilities.R | 4 ++++ R/spatial_internal.R | 35 ++++++++++++++++++----------------- man/FindConservedMarkers.Rd | 8 ++++---- man/RunMultiCCA.Rd | 16 ++++++++++++++++ 11 files changed, 96 insertions(+), 52 deletions(-)
Title: Enhanced Command History Tracking for R Sessions and Dynamic
Documents
Description: Automatically tracks and makes programmatically available code
evaluation history in R sessions and dynamic documents.
Author: Gabriel Becker [aut, cre]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between histry versions 0.1.1 dated 2018-02-11 and 0.1.2 dated 2018-02-14
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/allClasses.R | 4 ++-- R/history.R | 2 ++ inst/doc/vignette.html | 3 +-- inst/doc/vignette2.pdf |binary 6 files changed, 14 insertions(+), 13 deletions(-)
Title: Multivariate Distance Matrix Regression
Description: Allows users to conduct multivariate distance matrix regression using analytic p-values and compute measures of effect size. For details on the method, see McArtor, Lubke, & Bergeman (2017) <doi:10.1007/s11336-016-9527-8>.
Author: Daniel B. McArtor (dmcartor@gmail.com) [aut, cre]
Maintainer: Daniel B. McArtor <dmcartor@gmail.com>
Diff between MDMR versions 0.5.0 dated 2017-03-15 and 0.5.1 dated 2018-02-14
DESCRIPTION | 16 MD5 | 42 - R/MDMR-package.R | 6 R/mdmr.R | 1476 ++++++++++++++++++-------------------------- build/vignette.rds |binary inst/doc/mdmr-vignette.R | 29 inst/doc/mdmr-vignette.Rmd | 33 inst/doc/mdmr-vignette.html | 140 ++-- man/MDMR-package.Rd | 10 man/X.clust.Rd | 1 man/X.mdmr.Rd | 3 man/Y.clust.Rd | 1 man/Y.mdmr.Rd | 3 man/delta.Rd | 34 - man/gower.Rd | 7 man/mdmr.Rd | 14 man/mixed.mdmr.Rd | 11 man/print.mdmr.Rd | 3 man/print.mixed.mdmr.Rd | 3 man/summary.mdmr.Rd | 12 man/summary.mixed.mdmr.Rd | 10 vignettes/mdmr-vignette.Rmd | 33 22 files changed, 825 insertions(+), 1062 deletions(-)
Title: Tools for Healthcare Machine Learning
Description: A machine learning toolbox tailored to healthcare data.
Aids in data cleaning, model development, hyperparameter tuning, and model
deployment in a production 'SQL' environment. Algorithms currently supported
are Lasso, Random Forest, Extreme Gradient Boosting, K-means clustering, and Linear Mixed Modeling.
Author: Levi Thatcher [aut],
Michael Levy [aut, cre],
Mike Mastanduno [aut],
Taylor Larsen [aut],
Taylor Miller [aut]
Maintainer: Michael Levy <michael.levy@healthcatalyst.com>
Diff between healthcareai versions 1.2.3 dated 2017-12-22 and 1.2.4 dated 2018-02-14
healthcareai-1.2.3/healthcareai/tests/testthat/test-deploy-pushes-to-sqlite.R |only healthcareai-1.2.3/healthcareai/tests/testthat/test-write-data.r |only healthcareai-1.2.4/healthcareai/DESCRIPTION | 8 +-- healthcareai-1.2.4/healthcareai/MD5 | 9 +-- healthcareai-1.2.4/healthcareai/R/zzz.R |only healthcareai-1.2.4/healthcareai/README.md | 8 ++- healthcareai-1.2.4/healthcareai/tests/testthat/test-XGBoost-deploy-pushes-to-sql.R | 25 ---------- 7 files changed, 13 insertions(+), 37 deletions(-)
Title: Data-Driven Identification of SVAR Models
Description: Implements data-driven identification methods for structural vector autoregressive (SVAR) models.
Based on an existing VAR model object (provided by e.g. VAR() from the 'vars' package), the structural
impact matrix is obtained via data-driven identification techniques (i.e. changes in volatility (Rigobon, R. (2003) <doi:10.1162/003465303772815727>),
least dependent innovations (Herwartz, H., Ploedt, M., (2016) <doi:10.1016/j.jimonfin.2015.11.001>) or non-Gaussian maximum likelihood (Lanne, M., Meitz, M., Saikkonen, P. (2017) <doi:10.1016/j.jeconom.2016.06.002>).
Author: Alexander Lange [aut, cre],
Bernhard Dalheimer [aut],
Helmut Herwartz [aut],
Simone Maxand [aut],
Hannes Riebl [ctb]
Maintainer: Alexander Lange <alexander.lange@uni-goettingen.de>
Diff between svars versions 1.1.0 dated 2018-01-16 and 1.1.1 dated 2018-02-14
DESCRIPTION | 17 +- MD5 | 57 ++++--- NAMESPACE | 3 R/bootstrap_mb.R | 166 +++++++++++++++----- R/bootstrap_wild.R | 128 +++++++++++++--- R/chow.test.R | 36 +++- R/fev.R | 2 R/hd.R | 2 R/id.cv.R | 49 ++++-- R/id.cvm.R | 2 R/id.ngml.R | 23 +- R/identifyVolatility.R | 390 ++++++++++++++++++++++--------------------------- R/imrf.R | 2 R/js_test.R |only R/likelihoodFunction.R | 13 + R/permutation.R |only R/summary.chow.R | 2 R/summary.jstest.R |only R/summary.sboot.R |only R/summary.svars.R | 2 README.md | 30 +++ data/USA.RData |binary man/chow.test.Rd | 18 +- man/fev.Rd | 3 man/hd.Rd | 3 man/id.cv.Rd | 26 ++- man/id.cvm.Rd | 2 man/imrf.Rd | 2 man/js.test.Rd |only man/mb.boot.Rd | 33 ++-- man/wild.boot.Rd | 32 ++-- tests |only 32 files changed, 657 insertions(+), 386 deletions(-)
Title: Nonparametric Hypothesis Tests of Isotropy and Symmetry
Description: Implements nonparametric hypothesis tests to check isotropy and
symmetry properties for two-dimensional spatial data.
Author: Zachary Weller [aut, cre]
Maintainer: Zachary Weller <wellerz@stat.colostate.edu>
Diff between spTest versions 0.2.4 dated 2016-05-12 and 0.2.5 dated 2018-02-14
spTest-0.2.4/spTest/vignettes/figures/fig-model1-eps-converted-to.pdf |only spTest-0.2.4/spTest/vignettes/figures/fig-model1.eps |only spTest-0.2.4/spTest/vignettes/figures/fig-narccap2-eps-converted-to.pdf |only spTest-0.2.4/spTest/vignettes/figures/fig-narccap2.eps |only spTest-0.2.4/spTest/vignettes/figures/fig-rain3-eps-converted-to.pdf |only spTest-0.2.4/spTest/vignettes/figures/fig-rain3.eps |only spTest-0.2.4/spTest/vignettes/figures/fig-rain4-eps-converted-to.pdf |only spTest-0.2.4/spTest/vignettes/figures/fig-rain4.eps |only spTest-0.2.4/spTest/vignettes/figures/fig-rainplots-eps-converted-to.pdf |only spTest-0.2.4/spTest/vignettes/figures/fig-rainplots.eps |only spTest-0.2.5/spTest/DESCRIPTION | 12 spTest-0.2.5/spTest/MD5 | 93 spTest-0.2.5/spTest/NAMESPACE | 1 spTest-0.2.5/spTest/R/spTest.R | 1 spTest-0.2.5/spTest/build/vignette.rds |binary spTest-0.2.5/spTest/inst/CITATION |only spTest-0.2.5/spTest/inst/doc/spTest-vig.R | 338 spTest-0.2.5/spTest/inst/doc/spTest-vig.pdf |binary spTest-0.2.5/spTest/inst/doc/spTest-vig.rnw | 571 spTest-0.2.5/spTest/man/GuanTestGrid.Rd | 1 spTest-0.2.5/spTest/man/GuanTestUnif.Rd | 1 spTest-0.2.5/spTest/man/LuTest.Rd | 1 spTest-0.2.5/spTest/man/MaityTest.Rd | 1 spTest-0.2.5/spTest/man/WRFG.Rd | 1 spTest-0.2.5/spTest/man/htestIso-class.Rd | 2 spTest-0.2.5/spTest/man/print.htestIso.Rd | 1 spTest-0.2.5/spTest/man/spTest.Rd | 2 spTest-0.2.5/spTest/vignettes/figures/fig-anisotropicsim-eps-converted-to.pdf |only spTest-0.2.5/spTest/vignettes/figures/fig-anisotropicsim.eps |only spTest-0.2.5/spTest/vignettes/figures/fig-dirsemi1-eps-converted-to.pdf |binary spTest-0.2.5/spTest/vignettes/figures/fig-dirsemi1.eps | 134 spTest-0.2.5/spTest/vignettes/figures/fig-dsvar2-eps-converted-to.pdf |binary spTest-0.2.5/spTest/vignettes/figures/fig-dsvar2.eps | 144 spTest-0.2.5/spTest/vignettes/figures/fig-elev-eps-converted-to.pdf |binary spTest-0.2.5/spTest/vignettes/figures/fig-elev.eps | 2064 spTest-0.2.5/spTest/vignettes/figures/fig-grid-eps-converted-to.pdf |binary spTest-0.2.5/spTest/vignettes/figures/fig-grid.eps | 2112 spTest-0.2.5/spTest/vignettes/figures/fig-heatmap1-eps-converted-to.pdf |binary spTest-0.2.5/spTest/vignettes/figures/fig-heatmap1.eps | 1444 spTest-0.2.5/spTest/vignettes/figures/fig-iso2-eps-converted-to.pdf |binary spTest-0.2.5/spTest/vignettes/figures/fig-iso2.eps | 1449 spTest-0.2.5/spTest/vignettes/figures/fig-isotropicsim-eps-converted-to.pdf |only spTest-0.2.5/spTest/vignettes/figures/fig-isotropicsim.eps |only spTest-0.2.5/spTest/vignettes/figures/fig-narccap-eps-converted-to.pdf |binary spTest-0.2.5/spTest/vignettes/figures/fig-narccap.eps |41903 ++++++---- spTest-0.2.5/spTest/vignettes/figures/fig-precipdv-eps-converted-to.pdf |binary spTest-0.2.5/spTest/vignettes/figures/fig-precipdv.eps | 157 spTest-0.2.5/spTest/vignettes/figures/fig-rain-eps-converted-to.pdf |binary spTest-0.2.5/spTest/vignettes/figures/fig-rain.eps | 1978 spTest-0.2.5/spTest/vignettes/figures/fig-rain1-eps-converted-to.pdf |binary spTest-0.2.5/spTest/vignettes/figures/fig-rain1.eps | 8 spTest-0.2.5/spTest/vignettes/figures/fig-rain2-eps-converted-to.pdf |binary spTest-0.2.5/spTest/vignettes/figures/fig-rain2.eps | 961 spTest-0.2.5/spTest/vignettes/spTest-vig.rnw | 571 spTest-0.2.5/spTest/vignettes/spTestReferences.bib | 347 55 files changed, 34564 insertions(+), 19734 deletions(-)
Title: Turtle Graphics
Description: An implementation of turtle graphics
<http://en.wikipedia.org/wiki/Turtle_graphics>.
Turtle graphics comes from Papert's language Logo and has
been used to teach concepts of computer programming.
Author: Anna Cena [aut],
Marek Gagolewski [aut],
Barbara Zogala-Siudem [aut, cre],
Marcin Kosinski [aut],
Natalia Potocka [aut]
Maintainer: Barbara Zogala-Siudem <zogala@rexamine.com>
Diff between TurtleGraphics versions 1.0-7 dated 2017-10-23 and 1.0-8 dated 2018-02-14
DESCRIPTION | 22 +++++++++++----------- MD5 | 38 +++++++++++++++++++------------------- NEWS | 6 +++++- build/vignette.rds |binary inst/doc/TurtleGraphics.R | 4 ++-- inst/doc/TurtleGraphics.Rnw | 10 +++++----- inst/doc/TurtleGraphics.pdf |binary man/TurtleGraphics-package.Rd | 15 ++++++++------- man/turtle_do.Rd | 1 + man/turtle_getpos.Rd | 3 ++- man/turtle_goto.Rd | 3 ++- man/turtle_init.Rd | 1 + man/turtle_move.Rd | 5 +++-- man/turtle_param.Rd | 5 +++-- man/turtle_reset.Rd | 1 + man/turtle_show.Rd | 3 ++- man/turtle_status.Rd | 1 + man/turtle_turn.Rd | 3 ++- man/turtle_up.Rd | 3 ++- vignettes/TurtleGraphics.Rnw | 10 +++++----- 20 files changed, 75 insertions(+), 59 deletions(-)
More information about TurtleGraphics at CRAN
Permanent link
Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework,
currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre],
Matthieu Stigler [ctb],
Eric Persson [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between rsdmx versions 0.5-10 dated 2017-11-01 and 0.5-11 dated 2018-02-14
DESCRIPTION | 9 +-- MD5 | 18 +++--- R/SDMXGenericData-methods.R | 102 ++++++++++++++++++++++++------------- R/SDMXServiceProvider-methods.R | 24 ++++++++ R/readSDMX.R | 23 +++++--- R/rsdmx.R | 4 - README.md | 2 build/vignette.rds |binary man/rsdmx.Rd | 4 - tests/testthat/test_Main_Helpers.R | 60 +++++++++++++++++++++ 10 files changed, 185 insertions(+), 61 deletions(-)
Title: R Interface to SDMX Web Services
Description: Provides functions to retrieve data and metadata from providers
that disseminate data by means of SDMX web services.
SDMX (Statistical Data and Metadata eXchange) is a standard that
has been developed with the aim of simplifying the exchange of
statistical information.
More about the SDMX standard and the SDMX Web Services
can be found at: <http://sdmx.org>.
Author: Attilio Mattiocco, Diana Nicoletti, Gianpaolo Lopez, Banca d'Italia
Maintainer: Attilio Mattiocco <attilio.mattiocco@bancaditalia.it>
Diff between RJSDMX versions 1.7 dated 2017-03-12 and 1.9-3 dated 2018-02-14
DESCRIPTION | 12 +++--- MD5 | 13 +++---- NAMESPACE | 1 R/SdmxClient.R | 27 ++++++++++++-- R/TSConverter.R | 89 +++++++++++++++++++++++++++++++++--------------- R/onLoad.R | 6 +++ inst/java/SDMX.jar |binary man/addLocalProvider.Rd |only 8 files changed, 106 insertions(+), 42 deletions(-)
Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling
into 'Python', R data types are automatically converted to their equivalent 'Python'
types. When values are returned from 'Python' to R they are converted back to R
types. Compatible with all versions of 'Python' >= 2.7.
Author: JJ Allaire [aut, cre],
Kevin Ushey [ctb],
RStudio [cph, fnd],
Yuan Tang [aut, cph],
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between reticulate versions 1.4 dated 2018-01-09 and 1.5 dated 2018-02-14
DESCRIPTION | 6 MD5 | 46 +- NAMESPACE | 1 NEWS.md | 12 R/package.R | 28 + R/python.R | 2 R/source.R |only inst/doc/arrays.R | 361 ------------------- inst/doc/arrays.Rmd | 85 +++- inst/doc/introduction.R | 16 inst/doc/introduction.Rmd | 46 +- inst/doc/introduction.html | 36 + inst/doc/package.Rmd | 6 inst/doc/package.html | 6 inst/doc/versions.Rmd | 4 inst/doc/versions.html | 4 inst/python/rpytools/help.py | 23 - man/py_run.Rd | 2 man/source_python.Rd |only tests/testthat/resources/eng-reticulate-example.html | 8 tests/testthat/script.py |only tests/testthat/test-python-source.R |only vignettes/arrays.Rmd | 85 +++- vignettes/introduction.Rmd | 46 +- vignettes/package.Rmd | 6 vignettes/versions.Rmd | 4 26 files changed, 303 insertions(+), 530 deletions(-)
Title: Empirical Bayes Estimation and Inference
Description: Kiefer-Wolfowitz maximum likelihood estimation for mixture models
and some other density estimation and regression methods based on convex
optimization. See Koenker and Gu (2017) REBayes: An R Package for Empirical
Bayes Mixture Methods, Journal of Statistical Software, 82, 1--26,
<DOI:10.18637/jss.v082.i08>.
Author: Roger Koenker [aut, cre],
Jiaying Gu [ctb],
Ivan Mizera [ctb]
Maintainer: Roger Koenker <rkoenker@uiuc.edu>
Diff between REBayes versions 1.2 dated 2017-12-17 and 1.3 dated 2018-02-14
DESCRIPTION | 8 ++++---- MD5 | 31 ++++++++++++++++--------------- R/KWDual.R | 4 ++-- demo/00Index | 1 + demo/meddep.R |only inst/ChangeLog | 7 +++++++ inst/Readme | 22 ++++++++++++++-------- inst/doc/Bdecon.Rnw | 2 +- inst/doc/Bdecon.pdf |binary inst/doc/medde.Rnw | 2 +- inst/doc/medde.pdf |binary inst/doc/rebayes.Rnw | 2 +- inst/doc/rebayes.pdf |binary man/KWDual.Rd | 4 ++-- vignettes/Bdecon.Rnw | 2 +- vignettes/medde.Rnw | 2 +- vignettes/rebayes.Rnw | 2 +- 17 files changed, 52 insertions(+), 37 deletions(-)
Title: Update and Manipulate Rd Documentation Objects
Description: Functions for manipulation of Rd objects, including function reprompt()
for updating existing Rd documentation for functions, methods and classes;
function rebib() for import of references from 'bibtex' files; a macro for
importing 'bibtex' references which can be used in Rd files and 'roxygen2'
comments; and other convenience functions for references.
Author: Georgi N. Boshnakov [aut, cre],
Duncan Murdoch [ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Rdpack versions 0.5-3 dated 2018-01-27 and 0.5-5 dated 2018-02-14
DESCRIPTION | 21 +- MD5 | 46 ++-- NAMESPACE | 2 NEWS | 49 +++++ R/RStudio.R |only R/Rdo2Rdf.R | 24 +- R/bib.R | 75 +++++++ R/inspect.R | 2 R/manip.R | 4 R/parse.R | 20 +- R/repromptAny.R | 43 +++- R/sections.R | 4 R/usage.R | 4 R/utils.R | 2 README.md | 291 ++++++++++++++++++------------ build/partial.rdb |binary inst/RStudio |only inst/doc/Inserting_bibtex_references.R | 9 inst/doc/Inserting_bibtex_references.Rnw | 23 +- inst/doc/Inserting_bibtex_references.pdf |binary man/RStudio_reprompt.Rd |only man/Rdpack-package.Rd | 121 +++++------- man/ereprompt.Rd |only man/rebib.Rd | 3 man/reprompt.Rd | 230 ++++++++++++++--------- vignettes/Inserting_bibtex_references.Rnw | 23 +- 26 files changed, 644 insertions(+), 352 deletions(-)
Title: Projection Pursuit Classification Tree Visualization
Description: Tools for exploring projection pursuit classification tree using
various projection pursuit indexes.
Author: Eun-Kyung Lee
Maintainer: Eun-Kyung Lee <lee.eunk@gmail.com>
Diff between PPtreeViz versions 2.0.1 dated 2016-12-19 and 2.0.3 dated 2018-02-14
DESCRIPTION | 10 ++--- MD5 | 45 +++++++++++++------------- R/PPoptViz.R | 6 +-- R/RcppExports.R | 14 ++++---- R/plotPPtreeclass.R | 19 +++++++---- R/print.R | 6 +-- inst |only man/ENTROPYindex1D.Rd | 1 man/GINIindex1D.Rd | 1 man/Huberplot.Rd | 1 man/LDAindex.Rd | 1 man/LDAopt.Rd | 1 man/Lrindex.Rd | 1 man/PDAindex.Rd | 1 man/PDAopt.Rd | 1 man/PPTreeclass.Rd | 1 man/PPclassNodeViz.Rd | 1 man/PPclassify.Rd | 1 man/PPopt.Rd | 1 man/PPoptViz.Rd | 7 +--- man/plot.PPtreeclass.Rd | 16 +++++---- man/predict.PPtreeclass.Rd | 3 - man/print.PPtreeclass.Rd | 7 +--- src/RcppExports.cpp | 77 ++++++++++++++++++++++++++------------------- 24 files changed, 116 insertions(+), 106 deletions(-)
Title: Permutation Tests for Regression, (Repeated Measures)
ANOVA/ANCOVA and Comparison of Signals
Description: Functions to compute p-values based on permutation tests. Regression, ANOVA and ANCOVA, omnibus F-tests, marginal unilateral and bilateral t-tests are available. Several methods to handle nuisance variables are implemented (Kherad-Pajouh, S., & Renaud, O. (2010) <doi:10.1016/j.csda.2010.02.015> ; Kherad-Pajouh, S., & Renaud, O. (2014) <doi:10.1007/s00362-014-0617-3> ; Winkler, A. M., Ridgway, G. R., Webster, M. A., Smith, S. M., & Nichols, T. E. (2014) <doi:10.1016/j.neuroimage.2014.01.060>). An extension for the comparison of signals issued from experimental conditions (e.g. EEG/ERP signals) is provided. Several corrections for multiple testing are possible, including the cluster-mass statistic (Maris, E., & Oostenveld, R. (2007) <doi:10.1016/j.jneumeth.2007.03.024>) and the threshold-free cluster enhancement (Smith, S. M., & Nichols, T. E. (2009) <doi:10.1016/j.neuroimage.2008.03.061>).
Author: Jaromil Frossard [aut, cre],
Olivier Renaud [aut]
Maintainer: Jaromil Frossard <jaromil.frossard@unige.ch>
Diff between permuco versions 1.0.0 dated 2018-01-10 and 1.0.1 dated 2018-02-14
DESCRIPTION | 18 ++++++++++-------- MD5 | 13 +++++++++---- NEWS |only R/fit_model.R | 8 ++++---- build |only inst |only man/aovperm.Rd | 6 +++--- man/lmperm.Rd | 2 +- vignettes |only 9 files changed, 27 insertions(+), 20 deletions(-)
Title: Graphical Model Stability and Variable Selection Procedures
Description: Model stability and variable inclusion plots [Mueller and Welsh
(2010, <doi:10.1111/j.1751-5823.2010.00108.x>); Murray, Heritier and Mueller
(2013, <doi:10.1002/sim.5855>)] as well as the adaptive fence [Jiang et al.
(2008, <doi:10.1214/07-AOS517>); Jiang et al.
(2009, <doi:10.1016/j.spl.2008.10.014>)] for linear and generalised linear models.
Author: Garth Tarr [aut, cre],
Samuel Mueller [aut],
Alan H Welsh [aut]
Maintainer: Garth Tarr <garth.tarr@gmail.com>
Diff between mplot versions 0.8.2 dated 2018-01-05 and 1.0.1 dated 2018-02-14
DESCRIPTION | 8 +- MD5 | 34 +++++----- NEWS | 9 ++ R/af.R | 11 ++- R/bglmnet.R | 159 +++++++++++++++++++++++++-------------------------- R/mplot-package.R | 5 - R/mplot.R | 11 ++- R/vis.R | 31 ++++++++- README.md | 6 - inst/CITATION | 38 +++++------- man/af.Rd | 10 ++- man/artificialeg.Rd | 2 man/bglmnet.Rd | 11 +-- man/mplot-package.Rd | 5 + man/mplot.Rd | 13 ++-- man/plot.bglmnet.Rd | 8 +- man/plot.vis.Rd | 16 ++++- man/vis.Rd | 14 ++++ 18 files changed, 236 insertions(+), 155 deletions(-)
Title: Acoustic Template Detection in R
Description: Acoustic template detection and monitoring database interface. Create, modify, save, and use templates for detection of animal vocalizations. View, verify, and extract results. Upload a MySQL schema to a existing instance, manage survey metadata, write and read templates and detections locally or to the database.
Author: Sasha D. Hafner <sdh11@cornell.edu> and Jon Katz <jonkatz4@gmail.com>, with code for the Fourier transform from the seewave package (by Jerome Sueur, Thierry Aubin, and Caroline Simonis), and code for the readMP3 function from the tuneR package (by Uwe Ligges). Therese Donovan provided creative direction and database design support.
Maintainer: Sasha D. Hafner <sdh11@cornell.edu>
Diff between monitoR versions 1.0.5 dated 2017-02-17 and 1.0.7 dated 2018-02-14
ChangeLog | 30 ++++++++++++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 39 ++++++++++++++++++++------------------- NEWS | 16 ++++++++++++++++ R/binMatch.R | 36 +++++++++++++++++++++++------------- R/corMatch.R | 36 +++++++++++++++++++++++------------- R/quietcat.R |only R/spectro.R | 6 ++++-- README | 3 --- build/vignette.rds |binary data/btnw.rda |binary data/oven.rda |binary data/survey.rda |binary data/survey_anno.rda |binary inst/doc/monitoR_QuickStart.R | 11 +++++++---- inst/doc/monitoR_QuickStart.Rnw | 18 +++++++++--------- inst/doc/monitoR_QuickStart.pdf |binary man/batchDetection.Rd | 2 +- man/specCols.Rd | 1 + man/templateMatching.Rd | 15 +++++++-------- vignettes/monitoR_QuickStart.Rnw | 18 +++++++++--------- 21 files changed, 154 insertions(+), 85 deletions(-)
Title: Tools to Deal with Fuzzy Numbers
Description: S4 classes and methods
to deal with fuzzy numbers. They allow for computing any arithmetic
operations (e.g., by using the Zadeh extension principle),
performing approximation of arbitrary FNs by trapezoidal and piecewise
linear FNs, preparing plots of FNs for publications, computing
possibility and necessity values for comparisons, etc.
Author: Marek Gagolewski [aut, cre],
Jan Caha [ctb]
Maintainer: Marek Gagolewski <gagolews@rexamine.com>
Diff between FuzzyNumbers versions 0.4-1 dated 2015-02-26 and 0.4-2 dated 2018-02-14
DESCRIPTION | 23 - MD5 | 130 ++++----- NAMESPACE | 2 NEWS | 6 R/FuzzyNumbers-package.R | 56 ++-- R/methods-compare.R | 15 - R/methods-trapezoidalApproximation.R | 24 - build/vignette.rds |binary inst/CITATION | 4 inst/doc/FuzzyNumbersTutorial.R | 8 inst/doc/FuzzyNumbersTutorial.Rnw | 14 - inst/doc/FuzzyNumbersTutorial.pdf |binary man/Arithmetic-methods.Rd | 183 ++----------- man/DiscontinuousFuzzyNumber-class.Rd | 19 - man/DiscontinuousFuzzyNumber.Rd | 19 - man/Extract-methods.Rd | 2 man/FuzzyNumber-class.Rd | 92 ------ man/FuzzyNumber.Rd | 95 ------ man/FuzzyNumbers-package.Rd | 4 man/PiecewiseLinearFuzzyNumber-class.Rd | 83 ------ man/PiecewiseLinearFuzzyNumber.Rd | 83 ------ man/PowerFuzzyNumber-class.Rd | 28 -- man/PowerFuzzyNumber.Rd | 28 -- man/TrapezoidalFuzzyNumber-class.Rd | 56 ---- man/TrapezoidalFuzzyNumber.Rd | 56 ---- man/TriangularFuzzyNumber.Rd | 56 ---- man/alphaInterval-methods.Rd | 246 ++---------------- man/alphacut-methods.Rd | 97 ------- man/ambiguity-methods.Rd | 102 ------- man/approxInvert.Rd | 4 man/arctan2.Rd | 85 ------ man/as.FuzzyNumber.Rd | 112 -------- man/as.PiecewiseLinearFuzzyNumber.Rd | 239 +---------------- man/as.PowerFuzzyNumber.Rd | 258 ++----------------- man/as.TrapezoidalFuzzyNumber.Rd | 258 ++----------------- man/as.character-methods.Rd | 211 +-------------- man/convertAlpha.Rd | 4 man/convertSide.Rd | 4 man/core-methods.Rd | 96 ------- man/distance-methods.Rd | 105 +------ man/evaluate-methods.Rd | 93 ------ man/expectedInterval-methods.Rd | 244 +---------------- man/expectedValue-methods.Rd | 106 ------- man/fapply-methods.Rd | 105 ------- man/integrateAlpha-methods.Rd | 109 +------- man/integrate_discont_val.Rd | 2 man/maximum.Rd | 91 ------ man/minimum.Rd | 91 ------ man/necessityExceedance.Rd | 100 +------ man/necessityStrictExceedance.Rd | 100 +------ man/necessityStrictUndervaluation.Rd | 100 +------ man/necessityUndervaluation.Rd | 100 +------ man/piecewiseLinearApproximation-methods.Rd | 109 +------- man/plot-methods.Rd | 236 ++--------------- man/possibilityExceedance.Rd | 97 ------- man/possibilityStrictExceedance.Rd | 100 +------ man/possibilityStrictUndervaluation.Rd | 100 +------ man/possibilityUndervaluation.Rd | 100 +------ man/pow-PiecewiseLinearFuzzyNumber-numeric-method.Rd | 108 ------- man/show-methods.Rd | 93 ------ man/supp-methods.Rd | 96 ------- man/trapezoidalApproximation-methods.Rd | 99 ------- man/value-methods.Rd | 102 ------- man/weightedExpectedValue-methods.Rd | 104 ------- man/width-methods.Rd | 100 ------- vignettes/FuzzyNumbersTutorial.Rnw | 14 - 66 files changed, 794 insertions(+), 4812 deletions(-)
Title: Functional Data Analysis and Utilities for Statistical Computing
Description: Routines for exploratory and descriptive analysis of functional data such as depth measurements, atypical curves detection, regression models, supervised classification, unsupervised classification and functional analysis of variance.
Author: Manuel Febrero Bande [aut],
Manuel Oviedo de la Fuente [aut, cre],
Pedro Galeano [ctb],
Alicia Nieto [ctb],
Eduardo Garcia-Portugues [ctb]
Maintainer: Manuel Oviedo de la Fuente <manuel.oviedo@usc.es>
Diff between fda.usc versions 1.3.0 dated 2016-11-14 and 1.4.0 dated 2018-02-14
fda.usc-1.3.0/fda.usc/R/rp.flm.test2.R |only fda.usc-1.4.0/fda.usc/DESCRIPTION | 9 fda.usc-1.4.0/fda.usc/MD5 | 83 fda.usc-1.4.0/fda.usc/NAMESPACE | 11 fda.usc-1.4.0/fda.usc/NEWS | 32 fda.usc-1.4.0/fda.usc/R/CV.S.R | 4 fda.usc-1.4.0/fda.usc/R/LMDC.select.R |only fda.usc-1.4.0/fda.usc/R/S.NW.R | 13 fda.usc-1.4.0/fda.usc/R/anova.RPm.R | 2 fda.usc-1.4.0/fda.usc/R/classif.DD.r | 30 fda.usc-1.4.0/fda.usc/R/classif.np.r | 43 fda.usc-1.4.0/fda.usc/R/corStruct.R | 359 +- fda.usc-1.4.0/fda.usc/R/fdata.deriv.R | 29 fda.usc-1.4.0/fda.usc/R/fregre.PPC.PPLS.R | 24 fda.usc-1.4.0/fda.usc/R/fregre.igls.r | 1334 ++++------ fda.usc-1.4.0/fda.usc/R/h.default.R | 1 fda.usc-1.4.0/fda.usc/R/predict.classif.R | 5 fda.usc-1.4.0/fda.usc/R/predict.fregre.gls.r | 15 fda.usc-1.4.0/fda.usc/R/predict.fregre.igls.r | 210 - fda.usc-1.4.0/fda.usc/R/predict.fregre.lm.R | 356 +- fda.usc-1.4.0/fda.usc/R/predict.gls.nlme.r | 268 +- fda.usc-1.4.0/fda.usc/R/r.ou.R |only fda.usc-1.4.0/fda.usc/R/rp.flm.test.R |only fda.usc-1.4.0/fda.usc/inst/script/PLOS_influenza.R |only fda.usc-1.4.0/fda.usc/inst/script/PLOS_influenza2fig.R |only fda.usc-1.4.0/fda.usc/inst/script/PLOS_simulationsAR1.R |only fda.usc-1.4.0/fda.usc/inst/script/PLOS_simulationsAR2.R |only fda.usc-1.4.0/fda.usc/inst/script/flm_ar.r |only fda.usc-1.4.0/fda.usc/inst/script/influenza.R |only fda.usc-1.4.0/fda.usc/inst/script/influenza_prediction.R |only fda.usc-1.4.0/fda.usc/inst/script/jss757.R | 43 fda.usc-1.4.0/fda.usc/inst/script/rp.flm.test_examples.R |only fda.usc-1.4.0/fda.usc/inst/script/rp.flm.test_models_and_scenarios.R |only fda.usc-1.4.0/fda.usc/man/CV.S.Rd | 4 fda.usc-1.4.0/fda.usc/man/GCCV.S.Rd | 3 fda.usc-1.4.0/fda.usc/man/LMDC.select.Rd |only fda.usc-1.4.0/fda.usc/man/classif.np.Rd | 4 fda.usc-1.4.0/fda.usc/man/fdata.methods.Rd | 2 fda.usc-1.4.0/fda.usc/man/fregre.ppls.cv.Rd | 22 fda.usc-1.4.0/fda.usc/man/gridfdata.Rd | 2 fda.usc-1.4.0/fda.usc/man/int.simpson.Rd | 3 fda.usc-1.4.0/fda.usc/man/metric.lp.Rd | 2 fda.usc-1.4.0/fda.usc/man/norm.fdata.Rd | 4 fda.usc-1.4.0/fda.usc/man/predict.fregre.gls.Rd | 15 fda.usc-1.4.0/fda.usc/man/r.ou.Rd |only fda.usc-1.4.0/fda.usc/man/rdir.pc.Rd |only fda.usc-1.4.0/fda.usc/man/rp.flm.statistic.Rd | 106 fda.usc-1.4.0/fda.usc/man/rp.flm.test.Rd | 307 +- fda.usc-1.4.0/fda.usc/man/semimetric.basis.Rd | 4 fda.usc-1.4.0/fda.usc/src/fda.usc_init.c |only fda.usc-1.4.0/fda.usc/src/rp_stat.f90 | 62 51 files changed, 1775 insertions(+), 1636 deletions(-)
Title: Fitting Mixtures of CFUST Distributions
Description: Functions to fit finite mixture of multivariate canonical fundamental skew t (FM-CFUST) distributions, random sample generation, 2D and 3D contour plots. See Lee and McLachlan (2017) <doi:10.18637/jss.v083.i03> for more information and examples.
Author: Sharon X. Lee [aut, cre],
Geoffrey J. McLachlan [aut]
Maintainer: Sharon X. Lee <s.lee11@uq.edu.au>
Diff between EMMIXcskew versions 0.9-4 dated 2017-02-08 and 0.9-5 dated 2018-02-14
ChangeLog | 4 ++++ DESCRIPTION | 14 +++++++------- MD5 | 19 ++++++++++--------- inst |only man/EMMIXcskew-package.Rd | 9 +++++---- man/dfmcfust.Rd | 8 +++++++- man/fmcfust.Rd | 7 ++++++- man/fmcfust.contour.2d.Rd | 8 ++++---- man/fmmst.Rd | 12 +++++++++--- man/init.cfust.Rd | 10 +++++++--- man/random.Rd | 7 ++++++- 11 files changed, 65 insertions(+), 33 deletions(-)
Title: 0-1 Test for Chaos
Description: Computes and visualize the results of the 0-1 test for chaos proposed
by Gottwald and Melbourne (2004) <DOI:10.1137/080718851>. The algorithm is
available in parallel for the independent values of parameter c. Additionally,
fast RQA is added to distinguish chaos from noise.
Author: Tomas Martinovic [aut, cre]
Maintainer: Tomas Martinovic <tomas.martinovic@vsb.cz>
Diff between Chaos01 versions 1.1.0 dated 2018-01-19 and 1.1.1 dated 2018-02-14
DESCRIPTION | 12 ++- INSTALL |only MD5 | 29 +++++--- NAMESPACE | 1 NEWS | 11 +++ R/chaos01_plot.R | 130 ++++++++++++++++++++++++++++++++------- R/getval.R |only R/rqa_plot.R | 33 +++++---- R/test_chaos01.R | 6 - R/zzz.R |only man/Chaos01.Rd |only man/getVal.Rd |only man/plot.chaos01.Rd | 17 ++++- man/plot.chaos01.res.Rd | 13 +++ man/plot.chaos01.rqa.sequence.Rd | 5 + man/testChaos01.Rd | 6 - src/Kc_computation.c | 5 - src/RQA.c | 1 18 files changed, 202 insertions(+), 67 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: ORPHANED
Diff between RcppParallel versions 4.3.20.1 dated 2018-02-14 and 4.3.20.2 dated 2018-02-14
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/Makevars | 8 ++++---- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: R Graphics Output in LaTeX Format
Description: Provides a graphics output device for R that records plots
in a LaTeX-friendly format. The device transforms plotting
commands issued by R functions into LaTeX code blocks. When
included in a LaTeX document, these blocks are interpreted with
the help of 'TikZ'---a graphics package for TeX and friends
written by Till Tantau. Using the 'tikzDevice', the text of R
plots can contain LaTeX commands such as mathematical formula.
The device also allows arbitrary LaTeX code to be inserted into
the output stream.
Author: Charlie Sharpsteen [aut],
Cameron Bracken [aut],
Kirill Müller [ctb, cre],
Yihui Xie [ctb]
Maintainer: ORPHANED
Diff between tikzDevice versions 0.10-1.1 dated 2018-02-14 and 0.10-1.2 dated 2018-02-14
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- src/tikzDevice.c | 20 +++++++++++--------- 3 files changed, 18 insertions(+), 16 deletions(-)
Title: Flexible Cluster Algorithms
Description: The main function kcca implements a general framework for
k-centroids cluster analysis supporting arbitrary distance
measures and centroid computation. Further cluster methods
include hard competitive learning, neural gas, and QT
clustering. There are numerous visualization methods for
cluster results (neighborhood graphs, convex cluster hulls,
barcharts of centroids, ...), and bootstrap methods for the
analysis of cluster stability.
Author: Friedrich Leisch [aut, cre],
Evgenia Dimitriadou [ctb]
Maintainer: Friedrich Leisch <Friedrich.Leisch@R-project.org>
Diff between flexclust versions 1.3-4 dated 2013-07-02 and 1.3-5 dated 2018-02-14
DESCRIPTION | 18 ++++++++++++------ MD5 | 37 +++++++++++++++++++------------------ NAMESPACE | 7 +++++++ R/boxplot.R | 2 +- R/conversion.R | 9 ++++----- R/distances.R | 2 +- R/grouping.R | 4 ++-- R/info.R | 2 +- R/plot.R | 2 +- R/stripes.R | 3 +-- R/tour.R | 2 +- man/achieve.Rd | 6 +++--- man/birth.Rd | 6 +++--- man/dentitio.Rd | 6 +++--- man/dist2.Rd | 4 ++++ man/milk.Rd | 6 +++--- man/nutrient.Rd | 6 +++--- src/cclust.c | 9 +++------ src/init.c |only tests/disttests.R | 5 ++++- 20 files changed, 76 insertions(+), 60 deletions(-)
Title: R Graphics Output in LaTeX Format
Description: Provides a graphics output device for R that records plots
in a LaTeX-friendly format. The device transforms plotting
commands issued by R functions into LaTeX code blocks. When
included in a LaTeX document, these blocks are interpreted with
the help of 'TikZ'---a graphics package for TeX and friends
written by Till Tantau. Using the 'tikzDevice', the text of R
plots can contain LaTeX commands such as mathematical formula.
The device also allows arbitrary LaTeX code to be inserted into
the output stream.
Author: Charlie Sharpsteen [aut],
Cameron Bracken [aut],
Kirill Müller [ctb, cre],
Yihui Xie [ctb]
Maintainer: ORPHANED
Diff between tikzDevice versions 0.10-1 dated 2016-02-10 and 0.10-1.1 dated 2018-02-14
DESCRIPTION | 15 ++++++++++----- MD5 | 5 +++-- NAMESPACE | 11 +++++++---- src/init.c |only 4 files changed, 20 insertions(+), 11 deletions(-)
Title: Toolbox for Pseudo and Quasi Random Number Generation and RNG
Tests
Description: Provides (1) pseudo random generators - general linear congruential generators, multiple recursive generators and generalized feedback shift register (SF-Mersenne Twister algorithm and WELL generators); (2) quasi random generators - the Torus algorithm, the Sobol sequence, the Halton sequence (including the Van der Corput sequence) and (3) some RNG tests - the gap test, the serial test, the poker test. The package depends on rngWELL package but it can be provided without this dependency on demand to the maintainer. For true random number generation, use the 'random' package, for Latin Hypercube Sampling (a hybrid QMC method), use the 'lhs' package. A number of RNGs and tests for RNGs are also provided by 'RDieHarder', all available on CRAN. There is also a small stand-alone package 'rngwell19937' for the WELL19937a RNG.
Author: R port by Yohan Chalabi, Christophe Dutang, Petr Savicky and Diethelm Wuertz with underlying C codes of (i) the SFMT algorithm from M. Matsumoto and M. Saito, (ii) the Knuth-TAOCP RNG from D. Knuth.
Maintainer: ORPHANED
Diff between randtoolbox versions 1.17 dated 2015-07-30 and 1.17.1 dated 2018-02-14
DESCRIPTION | 15 +++++++++++---- MD5 | 10 +++++----- R/quasiRNG.R | 4 ++-- man/overall-doc.Rd | 2 +- src/init.c | 41 +++++++++++++++++++++++++++++++++++++++-- src/randtoolbox.c | 2 +- 6 files changed, 59 insertions(+), 15 deletions(-)
Title: High-Dimensional Repeated Measures
Description: Methods for testing main and interaction effects in possibly
high-dimensional repeated measures in factorial designs. The observations
of the subjects are assumed to be multivariate normal.
It is possible to use up to 2 whole- and 3 subplot factors.
Author: Martin Happ [aut, cre],
Harrar W. Solomon [aut],
Arne C. Bathke [aut]
Maintainer: Martin Happ <martin.happ@aon.at>
Diff between HRM versions 0.7.4 dated 2017-10-27 and 0.8.0 dated 2018-02-14
HRM-0.7.4/HRM/man/hrm.test.2.Rd |only HRM-0.7.4/HRM/man/hrm.test.Rd |only HRM-0.7.4/HRM/man/hrm.test.dataframe.Rd |only HRM-0.7.4/HRM/man/hrm.test.matrix.Rd |only HRM-0.8.0/HRM/DESCRIPTION | 12 HRM-0.8.0/HRM/MD5 | 70 ++-- HRM-0.8.0/HRM/NAMESPACE | 5 HRM-0.8.0/HRM/R/GUI.R | 18 - HRM-0.8.0/HRM/R/Repeated.R | 317 +++------------------ HRM-0.8.0/HRM/R/S3methods.R |only HRM-0.8.0/HRM/R/deprecated.R |only HRM-0.8.0/HRM/R/f1.R | 3 HRM-0.8.0/HRM/R/f1_sub0.R | 3 HRM-0.8.0/HRM/R/f2.R | 2 HRM-0.8.0/HRM/R/f2_old.R | 37 +- HRM-0.8.0/HRM/R/plot.R | 31 +- HRM-0.8.0/HRM/R/plot2.R |only HRM-0.8.0/HRM/R/utility.R | 33 -- HRM-0.8.0/HRM/man/EEG.Rd | 2 HRM-0.8.0/HRM/man/HRM-deprecated.Rd |only HRM-0.8.0/HRM/man/HRM.Rd | 4 HRM-0.8.0/HRM/man/hrm.1f.Rd | 2 HRM-0.8.0/HRM/man/hrm.1w.0f.Rd |only HRM-0.8.0/HRM/man/hrm.1w.1f.Rd | 2 HRM-0.8.0/HRM/man/hrm.1w.2f.Rd | 2 HRM-0.8.0/HRM/man/hrm.1w.3f.Rd | 2 HRM-0.8.0/HRM/man/hrm.2w.1f.Rd | 2 HRM-0.8.0/HRM/man/hrm.2w.2f.Rd | 2 HRM-0.8.0/HRM/man/hrm.GUI.Rd | 6 HRM-0.8.0/HRM/man/hrm.plot.Rd | 24 + HRM-0.8.0/HRM/man/hrm.test.1.none.Rd |only HRM-0.8.0/HRM/man/hrm.test.1.one.Rd | 6 HRM-0.8.0/HRM/man/hrm.test.2.between.Rd | 2 HRM-0.8.0/HRM/man/hrm.test.2.between.within.Rd | 2 HRM-0.8.0/HRM/man/hrm.test.2.one.Rd | 2 HRM-0.8.0/HRM/man/hrm.test.2.within.Rd | 2 HRM-0.8.0/HRM/man/hrm.test.3.between.Rd | 2 HRM-0.8.0/HRM/man/hrm.test.dataframe-deprecated.Rd |only HRM-0.8.0/HRM/man/hrm.test.matrices.Rd |only HRM-0.8.0/HRM/man/hrm.test.matrix-deprecated.Rd |only HRM-0.8.0/HRM/man/hrm_GUI.Rd |only HRM-0.8.0/HRM/man/hrm_test.Rd | 57 +++ HRM-0.8.0/HRM/man/hrm_test_internal.Rd |only HRM-0.8.0/HRM/man/plot.HRM.Rd |only 44 files changed, 255 insertions(+), 397 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: ORPHANED
Diff between RcppParallel versions 4.3.20 dated 2016-08-16 and 4.3.20.1 dated 2018-02-14
DESCRIPTION | 15 ++++++++--- MD5 | 25 +++++++++---------- src/Makevars | 2 - src/init.c |only src/tbb/build/SunOS.gcc.inc | 2 - src/tbb/build/linux.clang.inc | 2 - src/tbb/build/linux.gcc.inc | 2 - src/tbb/build/windows.gcc.inc | 2 - src/tbb/src/test/test_aligned_space.cpp | 2 - src/tbb/src/test/test_atomic.cpp | 2 - src/tbb/src/test/test_combinable.cpp | 2 - src/tbb/src/test/test_enumerable_thread_specific.cpp | 2 - src/tbb/src/test/test_tagged_msg.cpp | 2 - src/tbb/src/test/test_task_priority.cpp | 2 - 14 files changed, 35 insertions(+), 27 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-30 1.0.2