Title: Bayesian Applied Regression Modeling via Stan
Description: Estimates previously compiled regression models using the 'rstan'
package, which provides the R interface to the Stan C++ library for Bayesian
estimation. Users specify models via the customary R syntax with a formula and
data.frame plus some additional arguments for priors.
Author: Jonah Gabry [aut],
Imad Ali [ctb],
Sam Brilleman [ctb],
Jacqueline Buros Novik [ctb] (R/stan_jm.R),
AstraZeneca [ctb] (R/stan_jm.R),
Trustees of Columbia University [cph],
Simon Wood [cph] (R/stan_gamm4.R),
R Core Deveopment Team [cph] (R/stan_aov.R),
Douglas Bates [cph] (R/pp_data.R),
Martin Maechler [cph] (R/pp_data.R),
Ben Bolker [cph] (R/pp_data.R),
Steve Walker [cph] (R/pp_data.R),
Brian Ripley [cph] (R/stan_aov.R, R/stan_polr.R),
William Venables [cph] (R/stan_polr.R),
Ben Goodrich [cre, aut]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstanarm versions 2.17.2 dated 2017-12-21 and 2.17.3 dated 2018-02-17
DESCRIPTION | 15 ++++++++---- MD5 | 46 +++++++++++++++++++-------------------- R/posterior_predict.R | 21 ++++++++++++----- cleanup.win | 2 + inst/NEWS | 3 ++ inst/doc/aov.html | 4 +-- inst/doc/betareg.html | 4 +-- inst/doc/binomial.html | 4 +-- inst/doc/continuous.html | 8 +++--- inst/doc/count.html | 8 +++--- inst/doc/glmer.R | 3 ++ inst/doc/glmer.Rmd | 4 +++ inst/doc/glmer.html | 21 +++++++++++++++-- inst/doc/jm.html | 24 ++++++++++---------- inst/doc/lm.html | 4 +-- inst/doc/polr.html | 4 +-- inst/doc/pooling.html | 8 +++--- inst/doc/priors.html | 6 ++--- inst/doc/rstanarm.html | 4 +-- src/Makevars | 17 +++++++------- src/Makevars.win | 8 +++--- tests/testthat/test_stan_nlmer.R | 2 - tools/make_cc.R | 2 - vignettes/glmer.Rmd | 4 +++ 24 files changed, 136 insertions(+), 90 deletions(-)
Title: Tools for Computing on the Language
Description: Useful tools to pry back the covers of R and understand the
language at a deeper level.
Author: Hadley Wickham [aut, cre],
R Core team [ctb] (Some code extracted from base R)
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between pryr versions 0.1.3 dated 2017-10-30 and 0.1.4 dated 2018-02-17
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test-track-copy.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Statistics and Text Mining for Oil and Gas Papers from OnePetro
Metadata
Description: Application that retrieves papers metadata from the OnePetro website.
Thousands of papers on oil and gas live in OnePetro. By retrieving metadata
from the search queries, a summary of papers that match the
query words, can be retrieved for further analysis and text mining. There
are some statistics and data mining provided such as word cloud plots, keywords
frequency, conversion to corpus document, and removal of common usage words.
OnePetro link: <https://www.onepetro.org/>.
Author: Alfonso R. Reyes [aut, cre]
Maintainer: Alfonso R. Reyes <alfonso.reyes@oilgainsanalytics.com>
Diff between petro.One versions 0.1.1 dated 2017-11-02 and 0.1.3 dated 2018-02-17
DESCRIPTION | 9 MD5 | 43 ++-- NAMESPACE | 2 R/joining.R |only R/text_mining.R | 7 R/utils.R | 2 README.md | 224 ++++++++++------------ build/vignette.rds |binary inst/doc/document_types_of_papers.html | 148 ++++++-------- inst/doc/gather_thousand_papers_to_dataframe.html | 192 +++++++++--------- inst/doc/joining_keywords.R |only inst/doc/joining_keywords.Rmd |only inst/doc/joining_keywords.html |only inst/doc/make_wordcloud_01.html | 51 ++--- inst/doc/make_wordcloud_02.html | 51 ++--- inst/doc/permanent_downhole_gauge.html | 81 +++---- man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-14-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/join_keywords.Rd |only tests/testthat/test_joining.R |only tests/testthat/test_multipage.R | 42 ++-- vignettes/joining_keywords.Rmd |only 26 files changed, 424 insertions(+), 428 deletions(-)
Title: Methods for Clustering Mixed-Type Data
Description: Implements methods for clustering mixed-type data,
specifically combinations of continuous and nominal data. Special attention
is paid to the often-overlooked problem of equitably balancing the
contribution of the continuous and categorical variables. This package
implements KAMILA clustering, a novel method for clustering
mixed-type data in the spirit of k-means clustering. It does not require
dummy coding of variables, and is efficient enough to scale to rather large
data sets. Also implemented is Modha-Spangler clustering, which uses a
brute-force strategy to maximize the cluster separation simultaneously in the
continuous and categorical variables.
Author: Alexander Foss [aut, cre],
Marianthi Markatou [aut]
Maintainer: Alexander Foss <alexanderhfoss@gmail.com>
Diff between kamila versions 0.1.1.1 dated 2016-08-18 and 0.1.1.2 dated 2018-02-17
kamila-0.1.1.1/kamila/R/medea.R |only kamila-0.1.1.1/kamila/R/prediction_strength_deprec.R |only kamila-0.1.1.1/kamila/tests/testthat/test_medea.R |only kamila-0.1.1.1/kamila/tests/testthat/test_medea_helper_functions.R |only kamila-0.1.1.2/kamila/DESCRIPTION | 12 kamila-0.1.1.2/kamila/LICENSE |only kamila-0.1.1.2/kamila/MD5 | 46 kamila-0.1.1.2/kamila/NAMESPACE | 47 kamila-0.1.1.2/kamila/R/RcppExports.R | 70 kamila-0.1.1.2/kamila/R/calc_approx_bic_deprec.R | 44 kamila-0.1.1.2/kamila/R/gen_mixed_data.R | 484 +- kamila-0.1.1.2/kamila/R/kamila.R | 1895 +++++----- kamila-0.1.1.2/kamila/R/misc_functions.R | 556 +- kamila-0.1.1.2/kamila/R/modha_spangler.R | 440 +- kamila-0.1.1.2/kamila/README.md | 21 kamila-0.1.1.2/kamila/inst |only kamila-0.1.1.2/kamila/man/classifyKamila.Rd | 77 kamila-0.1.1.2/kamila/man/dummyCodeFactorDf.Rd | 45 kamila-0.1.1.2/kamila/man/genMixedData.Rd | 127 kamila-0.1.1.2/kamila/man/gmsClust.Rd | 146 kamila-0.1.1.2/kamila/man/kamila-package.Rd | 178 kamila-0.1.1.2/kamila/man/kamila.Rd | 199 - kamila-0.1.1.2/kamila/man/wkmeans.Rd | 115 kamila-0.1.1.2/kamila/src/cppfunctions.cpp | 5 kamila-0.1.1.2/kamila/tests/testthat.R | 8 kamila-0.1.1.2/kamila/tests/testthat/test_gmsClust.R | 28 kamila-0.1.1.2/kamila/tests/testthat/test_kamila.R | 120 27 files changed, 2359 insertions(+), 2304 deletions(-)
Title: Australian Tax Policy Analysis
Description: Utilities for costing and evaluating Australian tax policy, including high-performance tax and transfer calculators,
a fast method of projecting tax collections, and an interface to common indices from the Australian Bureau of Statistics.
Written to support Grattan Institute's Australian Perspectives program. For access to the 'taxstats' package, please run
install.packages("taxstats", repos = "https://hughparsonage.github.io/drat/", type = "source").
N.B. The 'taxstats' package is approximately 50 MB.
Author: Hugh Parsonage [aut, cre],
Tim Cameron [aut],
Brendan Coates [aut],
William Young [aut],
Ittima Cherastidtham [dtc],
W. Karsten [ctb],
M. Enrique Garcia [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between grattan versions 1.5.3.1 dated 2018-01-21 and 1.5.3.5 dated 2018-02-17
grattan-1.5.3.1/grattan/inst/doc/Modelling-superannuation-changes.R |only grattan-1.5.3.1/grattan/inst/doc/Modelling-superannuation-changes.Rmd |only grattan-1.5.3.1/grattan/inst/doc/Modelling-superannuation-changes.html |only grattan-1.5.3.1/grattan/inst/doc/Performance-of-project.R |only grattan-1.5.3.1/grattan/inst/doc/Performance-of-project.Rmd |only grattan-1.5.3.1/grattan/inst/doc/Performance-of-project.html |only grattan-1.5.3.1/grattan/inst/doc/bracket-creep.R |only grattan-1.5.3.1/grattan/inst/doc/bracket-creep.Rmd |only grattan-1.5.3.1/grattan/inst/doc/bracket-creep.html |only grattan-1.5.3.1/grattan/inst/doc/companion-to-sample-file-1314.R |only grattan-1.5.3.1/grattan/inst/doc/companion-to-sample-file-1314.Rmd |only grattan-1.5.3.1/grattan/inst/doc/companion-to-sample-file-1314.html |only grattan-1.5.3.1/grattan/inst/doc/differential-uprating.R |only grattan-1.5.3.1/grattan/inst/doc/differential-uprating.Rmd |only grattan-1.5.3.1/grattan/inst/doc/differential-uprating.html |only grattan-1.5.3.1/grattan/tests/testthat/helper-grattan.R |only grattan-1.5.3.1/grattan/vignettes/Modelling-superannuation-changes.Rmd |only grattan-1.5.3.1/grattan/vignettes/Performance-of-project.Rmd |only grattan-1.5.3.1/grattan/vignettes/bracket-creep.Rmd |only grattan-1.5.3.1/grattan/vignettes/companion-to-sample-file-1314.Rmd |only grattan-1.5.3.1/grattan/vignettes/differential-uprating.Rmd |only grattan-1.5.3.5/grattan/DESCRIPTION | 13 - grattan-1.5.3.5/grattan/MD5 | 91 ++++------ grattan-1.5.3.5/grattan/NEWS.md | 11 - grattan-1.5.3.5/grattan/R/cpi_general_date.R | 3 grattan-1.5.3.5/grattan/R/cpi_inflator_quarters.R | 2 grattan-1.5.3.5/grattan/R/income_tax.R | 18 - grattan-1.5.3.5/grattan/R/inflator.R | 3 grattan-1.5.3.5/grattan/R/lf_inflator.R | 2 grattan-1.5.3.5/grattan/R/new_income_tax.R | 3 grattan-1.5.3.5/grattan/R/new_medicare_levy.R | 3 grattan-1.5.3.5/grattan/R/prohibit_vector_recycling.R | 3 grattan-1.5.3.5/grattan/R/project.R | 3 grattan-1.5.3.5/grattan/R/project_to.R | 3 grattan-1.5.3.5/grattan/R/rebate_income.R | 2 grattan-1.5.3.5/grattan/R/sapto.R | 3 grattan-1.5.3.5/grattan/R/student_repayment.R | 3 grattan-1.5.3.5/grattan/R/sysdata.rda |binary grattan-1.5.3.5/grattan/R/wage_inflator.R | 3 grattan-1.5.3.5/grattan/README.md | 32 +-- grattan-1.5.3.5/grattan/build/vignette.rds |binary grattan-1.5.3.5/grattan/inst/doc/grattan.R |only grattan-1.5.3.5/grattan/inst/doc/grattan.Rmd |only grattan-1.5.3.5/grattan/inst/doc/grattan.html |only grattan-1.5.3.5/grattan/man/lf_inflator.Rd | 2 grattan-1.5.3.5/grattan/tests/testthat.R | 24 ++ grattan-1.5.3.5/grattan/tests/testthat/test_differentially_uprate_wage.R | 3 grattan-1.5.3.5/grattan/tests/testthat/test_generic_inflator.R | 2 grattan-1.5.3.5/grattan/tests/testthat/test_incomeTaxCollections.R | 16 + grattan-1.5.3.5/grattan/tests/testthat/test_income_tax_cpp.R | 2 grattan-1.5.3.5/grattan/tests/testthat/test_incometax_dotsATO.R | 6 grattan-1.5.3.5/grattan/tests/testthat/test_inverse_income.R | 13 + grattan-1.5.3.5/grattan/tests/testthat/test_isfy.R | 3 grattan-1.5.3.5/grattan/tests/testthat/test_lf_inflator.R | 4 grattan-1.5.3.5/grattan/tests/testthat/test_new_income_tax.R | 4 grattan-1.5.3.5/grattan/tests/testthat/test_pmax_friends.R | 3 grattan-1.5.3.5/grattan/tests/testthat/test_student_repayment.R | 3 grattan-1.5.3.5/grattan/tests/testthat/test_total_receipts.R | 3 grattan-1.5.3.5/grattan/vignettes/grattan.Rmd |only 59 files changed, 165 insertions(+), 124 deletions(-)
Title: Detrend Images
Description: Image series affected by bleaching must be corrected by
'detrending' prior to the performance of quantitative analysis.
'detrendr' is for correctly detrending images. It uses Nolan's algorithm
(Nolan et al., 2017 <doi:10.1093/bioinformatics/btx434>).
Author: Rory Nolan [aut, cre, cph],
Sergi Padilla-Parra [ths, cph]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between detrendr versions 0.2.0 dated 2018-01-04 and 0.4.0 dated 2018-02-17
detrendr-0.2.0/detrendr/README.md |only detrendr-0.2.0/detrendr/tests/testthat/test_best_tau.R |only detrendr-0.2.0/detrendr/tests/testthat/test_detrend.R |only detrendr-0.2.0/detrendr/tests/testthat/test_pillar_stats.R |only detrendr-0.2.0/detrendr/tests/testthat/test_pillar_utils.R |only detrendr-0.2.0/detrendr/tests/testthat/test_utils.R |only detrendr-0.4.0/detrendr/DESCRIPTION | 14 detrendr-0.4.0/detrendr/MD5 | 68 - detrendr-0.4.0/detrendr/NAMESPACE | 4 detrendr-0.4.0/detrendr/NEWS.md | 21 detrendr-0.4.0/detrendr/R/best_degree.R | 54 + detrendr-0.4.0/detrendr/R/best_l.R | 81 +- detrendr-0.4.0/detrendr/R/best_tau.R | 57 + detrendr-0.4.0/detrendr/R/class_constructors.R | 26 detrendr-0.4.0/detrendr/R/detrend.R | 191 +++-- detrendr-0.4.0/detrendr/R/detrendr.R | 4 detrendr-0.4.0/detrendr/R/dir_detrend.R |only detrendr-0.4.0/detrendr/R/pillar_stats.R | 4 detrendr-0.4.0/detrendr/R/utils.R | 32 detrendr-0.4.0/detrendr/inst/doc/detrendr.R | 34 detrendr-0.4.0/detrendr/inst/doc/detrendr.Rmd | 45 - detrendr-0.4.0/detrendr/inst/doc/detrendr.html | 374 +++++++--- detrendr-0.4.0/detrendr/inst/extdata/bleached.tif |binary detrendr-0.4.0/detrendr/man/best_l.Rd | 8 detrendr-0.4.0/detrendr/man/best_tau.Rd | 5 detrendr-0.4.0/detrendr/man/detrend-directory.Rd |only detrendr-0.4.0/detrendr/man/detrended_img.Rd | 12 detrendr-0.4.0/detrendr/man/detrending.Rd | 50 - detrendr-0.4.0/detrendr/man/detrendr.Rd | 3 detrendr-0.4.0/detrendr/man/pillar-stats.Rd | 4 detrendr-0.4.0/detrendr/src/pillar_stats_parallel.cpp | 74 - detrendr-0.4.0/detrendr/src/pillar_utils.h | 25 detrendr-0.4.0/detrendr/src/summary_stats.h | 2 detrendr-0.4.0/detrendr/tests/testthat/test-best_params.R |only detrendr-0.4.0/detrendr/tests/testthat/test-class_constructors.R |only detrendr-0.4.0/detrendr/tests/testthat/test-detrend.R |only detrendr-0.4.0/detrendr/tests/testthat/test-dir_detrend.R |only detrendr-0.4.0/detrendr/tests/testthat/test-iterators.R |only detrendr-0.4.0/detrendr/tests/testthat/test-pillar_stats.R |only detrendr-0.4.0/detrendr/tests/testthat/test-pillar_utils.R |only detrendr-0.4.0/detrendr/tests/testthat/test-smooth.R | 1 detrendr-0.4.0/detrendr/tests/testthat/test-utils.R |only detrendr-0.4.0/detrendr/vignettes/detrendr.Rmd | 45 - 43 files changed, 783 insertions(+), 455 deletions(-)
Title: Statistical Tools for Covariance Analysis
Description: Covariance is of universal prevalence across various disciplines within statistics.
We provide a rich collection of geometric and inferential tools for convenient analysis of
covariance structures, topics including distance measures, mean covariance estimator,
covariance hypothesis test for one-sample and two-sample cases, and covariance estimation.
For an introduction to covariance in multivariate statistical analysis,
see Schervish (1987) <doi:10.1214/ss/1177013111>.
Author: Kyoungjae Lee [aut],
Lizhen Lin [ctb],
Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyou@nd.edu>
Diff between CovTools versions 0.2.1 dated 2017-11-15 and 0.3.0 dated 2018-02-17
CovTools-0.2.1/CovTools/R/CovEst.R |only CovTools-0.2.1/CovTools/R/CovEst.auto.R |only CovTools-0.2.1/CovTools/R/PreEst.R |only CovTools-0.2.1/CovTools/R/PreEst.auto.R |only CovTools-0.2.1/CovTools/man/CovEst.Rd |only CovTools-0.2.1/CovTools/man/CovEst.auto.Rd |only CovTools-0.2.1/CovTools/man/PreEst.Rd |only CovTools-0.2.1/CovTools/man/PreEst.auto.Rd |only CovTools-0.3.0/CovTools/DESCRIPTION | 13 CovTools-0.3.0/CovTools/MD5 | 59 ++- CovTools-0.3.0/CovTools/NAMESPACE | 14 CovTools-0.3.0/CovTools/R/CovDist.R | 5 CovTools-0.3.0/CovTools/R/CovEst.adaptive.R |only CovTools-0.3.0/CovTools/R/CovEst.hard.R |only CovTools-0.3.0/CovTools/R/CovEst.hardPD.R |only CovTools-0.3.0/CovTools/R/CovEst.nearPD.R |only CovTools-0.3.0/CovTools/R/CovEst.soft.R |only CovTools-0.3.0/CovTools/R/CovMean.R | 4 CovTools-0.3.0/CovTools/R/CovTest1.R | 6 CovTools-0.3.0/CovTools/R/CovTest2.R | 4 CovTools-0.3.0/CovTools/R/PreEst.banded1.R |only CovTools-0.3.0/CovTools/R/PreEst.banded2.R |only CovTools-0.3.0/CovTools/R/PreEst.banded3.R |only CovTools-0.3.0/CovTools/R/PreEst.glasso.R |only CovTools-0.3.0/CovTools/R/auxiliary.R | 4 CovTools-0.3.0/CovTools/R/auxiliary_invisible.R |only CovTools-0.3.0/CovTools/R/fns.covest.R | 359 ++---------------------- CovTools-0.3.0/CovTools/R/package-CovTools.R | 46 ++- CovTools-0.3.0/CovTools/build |only CovTools-0.3.0/CovTools/inst |only CovTools-0.3.0/CovTools/man/CovDist.Rd | 4 CovTools-0.3.0/CovTools/man/CovEst.adaptive.Rd |only CovTools-0.3.0/CovTools/man/CovEst.hard.Rd |only CovTools-0.3.0/CovTools/man/CovEst.hardPD.Rd |only CovTools-0.3.0/CovTools/man/CovEst.nearPD.Rd |only CovTools-0.3.0/CovTools/man/CovEst.soft.Rd |only CovTools-0.3.0/CovTools/man/CovMean.Rd | 4 CovTools-0.3.0/CovTools/man/CovTest1.Rd | 4 CovTools-0.3.0/CovTools/man/CovTest2.Rd | 4 CovTools-0.3.0/CovTools/man/CovTools-package.Rd | 46 ++- CovTools-0.3.0/CovTools/man/PreEst.banded1.Rd |only CovTools-0.3.0/CovTools/man/PreEst.banded2.Rd |only CovTools-0.3.0/CovTools/man/PreEst.banded3.Rd |only CovTools-0.3.0/CovTools/man/PreEst.glasso.Rd |only CovTools-0.3.0/CovTools/man/samplecovs.Rd | 4 45 files changed, 188 insertions(+), 392 deletions(-)
Title: Spatial Terms in Generalized Additive Models for Location Scale
and Shape Models
Description: It allows us to fit Gaussian Markov Random Field within the
Generalized Additive Models for Location Scale and Shape algorithms.
Author: Fernanda De Bastiani [aut, cre, cph],
Mikis Stasinopoulos [aut],
Robert Rigby [aut]
Maintainer: Fernanda De Bastiani <fernandadebastiani@gmail.com>
Diff between gamlss.spatial versions 1.3.4 dated 2017-08-10 and 1.3.5 dated 2018-02-17
gamlss.spatial-1.3.4/gamlss.spatial/build |only gamlss.spatial-1.3.4/gamlss.spatial/inst |only gamlss.spatial-1.3.4/gamlss.spatial/vignettes |only gamlss.spatial-1.3.5/gamlss.spatial/DESCRIPTION | 15 ++--- gamlss.spatial-1.3.5/gamlss.spatial/MD5 | 64 ------------------------ 5 files changed, 8 insertions(+), 71 deletions(-)
More information about gamlss.spatial at CRAN
Permanent link
Title: Composite Indicators Functions
Description: Contains functions to enhance approaches to the Composite Indicators methods, focusing, in particular, on the normalisation and weighting-aggregation steps.
Author: Francesco Vidoli, Elisa Fusco
Maintainer: Francesco Vidoli <fvidoli@gmail.com>
Diff between Compind versions 1.2.1 dated 2017-12-07 and 2.0 dated 2018-02-17
DESCRIPTION | 14 +++++++------- MD5 | 36 +++++++++++++++++++++++++----------- NAMESPACE | 14 ++++++++++++++ NEWS | 19 ++++++++++++++++++- R/bandwidth_CI.R |only R/ci_ampi.R |only R/ci_bod_constr_bad.R |only R/ci_rbod_constr_bad.R |only R/ci_rbod_constr_bad_Q.R |only R/ci_rbod_spatial.R |only R/ci_smaa_constr.R |only data/EU_2020.rda |binary data/EU_NUTS1.rda |binary inst/CITATION | 25 ++++++++++++------------- inst/doc/Compind_vignette.pdf |binary man/Compind-package.Rd | 14 ++++++++++---- man/bandwidth_CI.Rd |only man/ci_ampi.Rd |only man/ci_bod_constr.Rd | 4 ++-- man/ci_bod_constr_bad.Rd |only man/ci_geom_gen.Rd | 2 +- man/ci_rbod.Rd | 2 +- man/ci_rbod_constr_bad.Rd |only man/ci_rbod_constr_bad_Q.Rd |only man/ci_rbod_spatial.Rd |only man/ci_smaa_constr.Rd |only 26 files changed, 90 insertions(+), 40 deletions(-)