Title: Optimal Stratification of Sampling Frames for Multipurpose
Sampling Surveys
Description: In the field of stratified sampling design, this package
offers an approach for the determination of the best
stratification of a sampling frame, the one that ensures the
minimum sample cost under the condition to satisfy precision
constraints in a multivariate and multidomain case. This
approach is based on the use of the genetic algorithm: each
solution (i.e. a particular partition in strata of the sampling
frame) is considered as an individual in a population; the
fitness of all individuals is evaluated applying the
Bethel-Chromy algorithm to calculate the sampling size
satisfying precision constraints on the target estimates.
Functions in the package allows to: (a) analyse the obtained
results of the optimisation step; (b) assign the new strata
labels to the sampling frame; (c) select a sample from the new
frame accordingly to the best allocation.
Functions for the execution of the genetic algorithm are a modified
version of the functions in the 'genalg' package.
Author: Giulio Barcaroli, Marco Ballin, Daniela Pagliuca, Egon Willighagen,
Diego Zardetto
Maintainer: Giulio Barcaroli <gbarcaroli@gmail.com>
Diff between SamplingStrata versions 1.1 dated 2016-01-13 and 1.2 dated 2018-02-18
SamplingStrata-1.1/SamplingStrata/R/rbgaV2.R |only SamplingStrata-1.2/SamplingStrata/DESCRIPTION | 12 SamplingStrata-1.2/SamplingStrata/MD5 | 44 - SamplingStrata-1.2/SamplingStrata/NAMESPACE | 3 SamplingStrata-1.2/SamplingStrata/NEWS | 25 SamplingStrata-1.2/SamplingStrata/R/adjustSize.R |only SamplingStrata-1.2/SamplingStrata/R/aggrStrata.r | 20 SamplingStrata-1.2/SamplingStrata/R/buildFrameDF.R |only SamplingStrata-1.2/SamplingStrata/R/buildStrataDF.R | 10 SamplingStrata-1.2/SamplingStrata/R/evalSolution.r | 268 ++++++---- SamplingStrata-1.2/SamplingStrata/R/optimizeStrata.R | 25 SamplingStrata-1.2/SamplingStrata/R/rbga_PPF_GGA.R |only SamplingStrata-1.2/SamplingStrata/R/strataGenalg.R | 12 SamplingStrata-1.2/SamplingStrata/R/updateFrame.R | 9 SamplingStrata-1.2/SamplingStrata/R/updateStrata.r | 9 SamplingStrata-1.2/SamplingStrata/build/vignette.rds |binary SamplingStrata-1.2/SamplingStrata/inst/doc/SamplingStrataVignette.R | 106 +-- SamplingStrata-1.2/SamplingStrata/inst/doc/SamplingStrataVignette.Rnw | 99 ++- SamplingStrata-1.2/SamplingStrata/inst/doc/SamplingStrataVignette.pdf |binary SamplingStrata-1.2/SamplingStrata/man/adjustSize.Rd |only SamplingStrata-1.2/SamplingStrata/man/bethel.Rd | 2 SamplingStrata-1.2/SamplingStrata/man/buildFrameDF.Rd |only SamplingStrata-1.2/SamplingStrata/man/evalSolution.Rd | 40 - SamplingStrata-1.2/SamplingStrata/man/optimizeStrata.Rd | 24 SamplingStrata-1.2/SamplingStrata/vignettes/SamplingStrata.bib | 16 SamplingStrata-1.2/SamplingStrata/vignettes/SamplingStrataVignette.Rnw | 99 ++- 26 files changed, 542 insertions(+), 281 deletions(-)
More information about SamplingStrata at CRAN
Permanent link
Title: 'Rcpp' Integration for Numerical Computing Libraries
Description: A collection of open source libraries for numerical computing
(numerical integration, optimization, etc.) and their integration with
'Rcpp'.
Author: Yixuan Qiu [aut, cre],
Sreekumar Balan [aut] (Numerical integration library),
Matt Beall [aut] (Numerical integration library),
Mark Sauder [aut] (Numerical integration library),
Naoaki Okazaki [aut] (The libLBFGS library),
Thomas Hahn [aut] (The Cuba library)
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between RcppNumerical versions 0.3-1 dated 2016-12-09 and 0.3-2 dated 2018-02-18
DESCRIPTION | 14 ++-- MD5 | 20 +++--- R/RcppExports.R | 2 R/fastLR.R | 2 build/vignette.rds |binary inst/NEWS.Rd | 9 ++ inst/doc/introduction.html | 116 +++++++++++++++++++------------------- inst/include/optimization/LBFGS.h | 2 man/fastLR.Rd | 7 -- src/RcppExports.cpp | 2 src/register_routines.c | 9 ++ 11 files changed, 100 insertions(+), 83 deletions(-)
Title: Smoothed Bootstrap and Random Generation from Kernel Densities
Description: Smoothed bootstrap and functions for random generation from
univariate and multivariate kernel densities. It does not
estimate kernel densities.
Author: Tymoteusz Wolodzko
Maintainer: Tymoteusz Wolodzko <twolodzko+kernelboot@gmail.com>
Diff between kernelboot versions 0.1.3 dated 2017-12-18 and 0.1.4 dated 2018-02-18
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 2 +- R/kernelboot.R | 3 ++- tests/test_parallel.R | 27 ++++++++++++++++----------- 5 files changed, 28 insertions(+), 22 deletions(-)
Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Winston Chang [aut],
RStudio [cph],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Jim Hester <james.hester@rstudio.com>
Diff between devtools versions 1.13.4 dated 2017-11-09 and 1.13.5 dated 2018-02-18
DESCRIPTION | 14 MD5 | 18 - NEWS.md | 3 R/utils.r | 4 build/vignette.rds |binary inst/doc/dependencies.html | 352 +++++++++++++++++++------ tests/testthat/test-github.r | 1 tests/testthat/test-rtools.r | 2 tests/testthat/testDllRcpp/R/RcppExports.R | 6 tests/testthat/testDllRcpp/src/RcppExports.cpp | 14 10 files changed, 323 insertions(+), 91 deletions(-)
Title: Wrapper for 'GDAX' Cryptocurrency Exchange
Description: Allow access to both public and private end points to 'GDAX' cryptocurrency exchange.
For authenticated flow, users must have valid api, secret and passphrase to be able to connect.
Read more details on getting access to 'GDAX' API at:
<https://support.gdax.com/customer/en/portal/articles/2425383-how-can-i-create-an-api-key-for-gdax->.
Author: person("Dheeraj", "Agarwal", email = "dheeeraj.agarwal@gmail.com",
role = c("aut", "cre"))
Maintainer: Dheeraj Agarwal <dheeeraj.agarwal@gmail.com>
Diff between rgdax versions 0.2.0 dated 2018-01-09 and 0.3.0 dated 2018-02-18
DESCRIPTION | 6 ++-- MD5 | 17 ++++++------- NEWS.md |only R/accounts.R | 1 R/add_order.R | 14 +++++++--- R/fills.R | 17 ++++++++++--- README.md | 49 ++++++++++++++++++++++++-------------- man/add_order.Rd | 11 ++++++-- man/fills.Rd | 9 +++++- tests/testthat/test_public_info.R | 1 10 files changed, 83 insertions(+), 42 deletions(-)
More information about codingMatrices at CRAN
Permanent link
Title: Methods for Analyzing Binned Income Data
Description: Methods for model selection, model averaging, and calculating metrics, such as the Gini, Theil, Mean Log Deviation, etc, on binned income data where the topmost bin is right-censored. We provide both a non-parametric method, termed the bounded midpoint estimator (BME), which assigns cases to their bin midpoints; except for the censored bins, where cases are assigned to an income estimated by fitting a Pareto distribution. Because the usual Pareto estimate can be inaccurate or undefined, especially in small samples, we implement a bounded Pareto estimate that yields much better results. We also provide a parametric approach, which fits distributions from the generalized beta (GB) family. Because some GB distributions can have poor fit or undefined estimates, we fit 10 GB-family distributions and use multimodel inference to obtain definite estimates from the best-fitting distributions. We also provide binned income data from all United States of America school districts, counties, and states.
Author: Samuel V. Scarpino, Paul von Hippel, and Igor Holas
Maintainer: Samuel V. Scarpino <s.scarpino@northeastern.edu>
Diff between binequality versions 1.0.2 dated 2017-07-09 and 1.0.3 dated 2018-02-18
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- inst/CITATION | 21 ++++++++++++++------- man/binequality-package.Rd | 8 ++++---- 4 files changed, 26 insertions(+), 19 deletions(-)
Title: Training Run Tools for 'TensorFlow'
Description: Create and manage unique directories for each 'TensorFlow'
training run. Provides a unique, time stamped directory for each run
along with functions to retrieve the directory of the latest run or
latest several runs.
Author: JJ Allaire [aut, cre],
RStudio [cph, fnd],
Mike Bostock [cph] (D3 library - https://d3js.org/),
Masayuki Tanaka [cph] (C3 library - http://c3js.org/),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [cph] (jQuery library; authors:
inst/views/components/jquery-AUTHORS.txt),
Shaun Bowe [cph] (jQuery visibilityChanged plugin),
Materialize [cph] (Materizlize library - https://materializecss.com/),
Yuxi You [cph] (Vue.js library - https://vuejs.org/),
Kevin Decker [cph] (jsdiff library -
https://github.com/kpdecker/jsdiff/),
Rodrigo Fernandes [cph] (diff2html library - https://diff2html.xyz/),
Ivan Sagalaev [cph] (highlight.js library - https://highlightjs.org/),
Yauheni Pakala [cph] (highlightjs-line-numbers library)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between tfruns versions 1.2 dated 2018-01-18 and 1.3 dated 2018-02-18
DESCRIPTION | 9 ++---- MD5 | 30 ++++++++++----------- R/ls_runs.R | 69 ++++++++++++++++++++++++++++++++++++++++++++----- R/training_run.R | 2 - inst/doc/managing.R | 14 --------- inst/doc/managing.Rmd | 34 ------------------------ inst/doc/managing.html | 29 -------------------- inst/doc/overview.R | 4 +- inst/doc/overview.Rmd | 40 ++++++++++++++++------------ inst/doc/overview.html | 38 ++++++++++++++------------ inst/doc/tuning.Rmd | 57 ++++++++++++++++++++++++++++------------ inst/doc/tuning.html | 56 +++++++++++++++++++++++++++------------ man/ls_runs.Rd | 11 ++++++- vignettes/managing.Rmd | 34 ------------------------ vignettes/overview.Rmd | 40 ++++++++++++++++------------ vignettes/tuning.Rmd | 57 ++++++++++++++++++++++++++++------------ 16 files changed, 280 insertions(+), 244 deletions(-)
Title: Bayesian Modelling of Raman Spectroscopy
Description: Sequential Monte Carlo (SMC) algorithms for fitting a generalised additive
mixed model (GAMM) to surface-enhanced resonance Raman spectroscopy (SERRS),
using the method of Moores et al. (2016) <arXiv:1604.07299>. Multivariate
observations of SERRS are highly collinear and lend themselves to a reduced-rank
representation. The GAMM separates the SERRS signal into three components: a
sequence of Lorentzian, Gaussian, or pseudo-Voigt peaks; a smoothly-varying baseline;
and additive white noise. The parameters of each component of the model are estimated
iteratively using SMC. The posterior distributions of the parameters given the observed
spectra are represented as a population of weighted particles.
Author: Matt Moores [aut, cre] (<https://orcid.org/0000-0003-4531-3572>),
Jake Carson [aut],
Mark Girolami [aut],
Engineering and Physical Sciences Research Council [fnd] (EPSRC
programme grant ref: EP/L014165/1),
University of Warwick [cph]
Maintainer: Matt Moores <M.T.Moores@warwick.ac.uk>
Diff between serrsBayes versions 0.3-11 dated 2018-02-15 and 0.3-12 dated 2018-02-18
DESCRIPTION | 10 ++++++---- MD5 | 19 ++++++++++++++----- NEWS.md | 6 +++++- R/data.R |only README.md | 2 +- build |only data |only inst/doc |only inst/image/README-plotting-1.png |binary man/result.Rd |only src/mixVoigt.cpp | 2 +- vignettes |only 12 files changed, 27 insertions(+), 12 deletions(-)
Title: Fit the Gambin Model to Species Abundance Distributions
Description: Fits unimodal and multimodal gambin distributions to species-abundance distributions
from ecological data, as in in Matthews et al. (2014) <DOI:10.1111/ecog.00861>.
'gambin' is short for 'gamma-binomial'. The main function is fit_abundances(), which estimates
the 'alpha' parameter(s) of the gambin distribution using maximum likelihood. Functions are
also provided to generate the gambin distribution and for calculating likelihood statistics.
Author: Thomas Matthews [aut, cre],
Michael Krabbe Borregaard [aut],
Karl Ugland [aut],
Colin Gillespie [aut]
Maintainer: Thomas Matthews <txm676@gmail.com>
Diff between gambin versions 2.2.0 dated 2017-12-05 and 2.3.0 dated 2018-02-18
DESCRIPTION | 14 +++++++------- MD5 | 22 ++++++++++++---------- NAMESPACE | 1 + NEWS.md | 5 +++++ R/gambin-package.R | 11 ++++++----- R/mult_abundances.R |only README.md | 9 ++++----- build/vignette.rds |binary inst/doc/overview.Rmd | 14 ++++++++++++++ inst/doc/overview.html | 15 ++++++++------- man/gambin-package.Rd | 11 ++++++----- man/mult_abundances.Rd |only vignettes/overview.Rmd | 14 ++++++++++++++ 13 files changed, 77 insertions(+), 39 deletions(-)
Title: Calculating Ratios Between Two Data Sets and Correction for
Adhering Particles on Plants
Description: Calculation of ratios between two data sets containing environmental data like
element concentrations by different methods. Additionally plant element
concentrations can be corrected for adhering particles (soil, airborne dust).
Author: Solveig Pospiech [aut, cre],
Wiebke Fahlbusch [ctb]
Maintainer: Solveig Pospiech <s.pospiech@gmx.de>
Diff between ratios versions 1.1.0 dated 2017-07-18 and 1.2.0 dated 2018-02-18
ratios-1.1.0/ratios/man/preparation.DT2.Rd |only ratios-1.1.0/ratios/man/ratio.DT1_DT2.Rd |only ratios-1.1.0/ratios/man/ratio.append_smallest.Rd |only ratios-1.2.0/ratios/DESCRIPTION | 6 ratios-1.2.0/ratios/MD5 | 28 +-- ratios-1.2.0/ratios/NAMESPACE | 19 +- ratios-1.2.0/ratios/NEWS.md | 27 +++ ratios-1.2.0/ratios/R/CorrectionAdheringParticles.R | 99 +++++++---- ratios-1.2.0/ratios/R/Ratios.R | 142 ++++++++++------ ratios-1.2.0/ratios/R/Subfunctions.R | 43 ++-- ratios-1.2.0/ratios/R/pkgname.R | 2 ratios-1.2.0/ratios/man/Correction.AdheringParticles.Rd | 13 - ratios-1.2.0/ratios/man/preparationDT2.Rd |only ratios-1.2.0/ratios/man/ratioDT.Rd |only ratios-1.2.0/ratios/man/ratio_append_smallest.Rd |only ratios-1.2.0/ratios/man/ratios-package.Rd | 2 ratios-1.2.0/ratios/man/relError_dataset.Rd | 5 ratios-1.2.0/ratios/man/select.VarsElements.Rd | 5 18 files changed, 256 insertions(+), 135 deletions(-)
Title: Simulating and Conducting Phase 123 Trials
Description: Contains three simulation functions for implementing the entire Phase 123 trial and the separate Eff-Tox and Phase 3 portions of the trial, which may be beneficial for use on clusters. The functions AssignEffTox() and RandomizeEffTox() assign doses to patient cohorts during phase 12 and Reoptimize() determines the optimal dose to continue with during Phase 3. The functions ReturnMeansAgent() and ReturnMeanControl() gives the true mean survival for the agent doses and control and ReturnOCS() gives the operating characteristics of the design.
Author: Andrew G Chapple
Maintainer: Andrew Chapple <andrew.g.chapple@rice.edu>
Diff between Phase123 versions 1.2 dated 2018-02-07 and 1.4 dated 2018-02-18
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/PHASE123CODE.cpp | 14 ++++++++++---- 3 files changed, 15 insertions(+), 9 deletions(-)
Title: Functions for Likelihood Asymptotics
Description: Functions for computing the r and r* statistics for inference on an arbitrary scalar function of model parameters, plus some code for the (modified) profile likelihood.
Author: Ruggero Bellio and Donald Pierce
Maintainer: Ruggero Bellio <ruggero.bellio@uniud.it>
Diff between likelihoodAsy versions 0.45 dated 2016-11-02 and 0.50 dated 2018-02-18
likelihoodAsy-0.45/likelihoodAsy/vignettes/likelihoodAsy.bib |only likelihoodAsy-0.50/likelihoodAsy/DESCRIPTION | 9 ++--- likelihoodAsy-0.50/likelihoodAsy/MD5 | 17 ++++------ likelihoodAsy-0.50/likelihoodAsy/NAMESPACE | 2 - likelihoodAsy-0.50/likelihoodAsy/build/vignette.rds |binary likelihoodAsy-0.50/likelihoodAsy/inst/doc/likelihoodAsy.R | 2 - likelihoodAsy-0.50/likelihoodAsy/inst/doc/likelihoodAsy.Rnw | 5 +- likelihoodAsy-0.50/likelihoodAsy/inst/doc/likelihoodAsy.pdf |binary likelihoodAsy-0.50/likelihoodAsy/man/likelihoodAsy-package.Rd | 2 - likelihoodAsy-0.50/likelihoodAsy/vignettes/likelihoodAsy.Rnw | 5 +- 10 files changed, 22 insertions(+), 20 deletions(-)
Title: Modeling, Analysis, Validation and Visualization of Observer
Performance Studies in Diagnostic Radiology
Description: Tools for quantitative assessment of medical imaging systems, radiologists or computer aided ('CAD') algorithms. Implements methods described in a book: 'Chakraborty' 'DP' (2017), "Observer Performance Methods for Diagnostic Imaging - Foundations, Modeling, and Applications with R-Based Examples", Taylor-Francis <https://www.crcpress.com/9781482214840>. Data collection paradigms include receiver operating characteristic ('ROC') and its location specific extensions, primarily free-response 'ROC' ('FROC'). 'ROC' data consists of a single rating per image, where the rating is the perceived confidence level the image is of a diseased patient. 'FROC' data consists of a variable number (including zero) of mark-rating pairs per image, where a mark is the location of a clinically reportable suspicious region and the rating is the corresponding confidence level that it is a true lesion. The software supersedes the current Windows version of 'JAFROC' software <http://www.devchakraborty.com>. 'RJafroc' is derived from it being an enhanced R version of original Windows 'JAFROC'. Implemented are a number of figures of merit quantifying performance, functions for visualizing operating characteristics; three ROC ratings data curve-fitting algorithms: the 'binormal' model ('BM'), the contaminated binormal model ('CBM') and the radiological search model ('RSM'). Unlike the 'BM', the 'CBM' and the 'RSM' predict proper ROC curves that do not cross the chance diagonal or display inappropriate hooks near the upper right corner of the plots. 'RSM' fitting additionally yields measures of search and lesion-classification performances, in addition to the usual case-classification performance measured by the area under the 'ROC' curve. Search performance is the ability to find lesions while avoiding finding non-lesions. Lesion-classification performance is the ability to discriminate between found lesions and non-lesions. For fully crossed study designs, termed multiple-reader multiple-case, significance testing of reader-averaged figure-of-merit differences between modalities is implemented via both 'Dorfman', 'Berbaum' and 'Metz' ('DBM') and the 'Obuchowski' and 'Rockette' ('OR') methods. Single treatment analysis allows comparison of performance of a group of radiologists to a specified value, or comparison of 'CAD' performance to a group of radiologists interpreting the same cases. Sample size estimation tools are provided for 'ROC' and 'FROC' studies that allow estimation of relevant variances from a pilot study to predict required numbers of readers and cases in a pivotal study. Utility and data file manipulation functions allow data to be read in any of the currently used input formats, including Excel, and the results of the analysis can be viewed in text or Excel output files. The package is used extensively in the online appendices of the cited book. Directions for accessing the online material are available by following the software tab of <http://www.devchakraborty.com>.
Author: Dev Chakraborty [cre, aut, cph],
Xuetong Zhai [aut, cph],
Lucy D'Agostino McGowan [ctb]
Maintainer: Dev Chakraborty <dpc10ster@gmail.com>
Diff between RJafroc versions 1.0.0 dated 2018-02-04 and 1.0.1 dated 2018-02-18
DESCRIPTION | 10 +- MD5 | 115 +++++++++++++------------- NEWS.md |only R/DfReadDataFile.R | 2 R/DfReadLrocDataFile.R | 2 R/DfSaveDataFile.R | 2 R/ExampleCompare3ProperRocFits.R | 26 ++--- R/FitCbmRoc.R | 4 R/FitRsmRoc.R | 3 R/PlotEmpiricalOperatingCharacteristics.R | 4 R/PlotRsmOperatingCharacteristics.R | 27 ++++-- R/SsFROCPowerGivenJK.R | 2 R/StSignificanceTestingSingleFixedFactor.R | 6 - R/UtilAucBinormal.R | 4 R/UtilAucCBM.R | 2 R/UtilAucsRSM.R | 2 R/UtilFigureOfMerit.R | 2 R/UtilIntrinsic2PhysicalRSM.R | 2 R/UtilMeanSquares.R | 4 R/UtilOutputReport.R | 2 R/UtilPhysical2IntrinsicRSM.R | 2 R/datasets.R | 54 ++++++------ inst/doc |only man/DfReadDataFile.Rd | 2 man/DfReadLrocDataFile.Rd | 2 man/DfSaveDataFile.Rd | 2 man/ExampleCompare3ProperRocFits.Rd | 22 ++-- man/FitRsmRoc.Rd | 1 man/PlotEmpiricalOperatingCharacteristics.Rd | 4 man/PlotRsmOperatingCharacteristics.Rd | 10 +- man/RJafroc-package.Rd | 10 +- man/SsFROCPowerGivenJK.Rd | 2 man/StSignificanceTestingSingleFixedFactor.Rd | 6 - man/UtilAucBinormal.Rd | 4 man/UtilAucCBM.Rd | 2 man/UtilAucsRSM.Rd | 2 man/UtilFigureOfMerit.Rd | 2 man/UtilIntrinsic2PhysicalRSM.Rd | 2 man/UtilMeanSquares.Rd | 4 man/UtilOutputReport.Rd | 2 man/UtilPhysical2IntrinsicRSM.Rd | 2 man/dataset01.Rd | 4 man/dataset02.Rd | 18 ++-- man/dataset03.Rd | 2 man/dataset04.Rd | 2 man/dataset05.Rd | 2 man/dataset06.Rd | 2 man/dataset07.Rd | 2 man/dataset08.Rd | 2 man/dataset09.Rd | 2 man/dataset10.Rd | 2 man/dataset11.Rd | 2 man/dataset12.Rd | 2 man/dataset13.Rd | 2 man/dataset14.Rd | 4 man/datasetCadLroc.Rd | 2 man/datasetCrossedModality.Rd | 2 man/datasetDegenerate.Rd | 2 src/RsmFuncs.cpp | 16 +-- 59 files changed, 222 insertions(+), 206 deletions(-)
Title: Preprocessing Algorithms for Imbalanced Datasets
Description: Class imbalance usually damages the performance of classifiers. Thus, it is
important to treat data before applying a classifier algorithm. This package
includes recent resampling algorithms in the literature: (Barua et al. 2014)
<doi:10.1109/tkde.2012.232>; (Das et al. 2015) <doi:10.1109/tkde.2014.2324567>,
(Zhang et al. 2014) <doi:10.1016/j.inffus.2013.12.003>; (Gao et al. 2014)
<doi:10.1016/j.neucom.2014.02.006>; (Almogahed et al. 2014)
<doi:10.1007/s00500-014-1484-5>. It also includes an useful interface to
perform oversampling.
Author: Ignacio Cordón [aut, cre],
Salvador García [aut],
Alberto Fernández [aut],
Francisco Herrera [aut]
Maintainer: Ignacio Cordón <nacho.cordon.castillo@gmail.com>
Diff between imbalance versions 0.1.1 dated 2017-11-15 and 1.0.0 dated 2018-02-18
DESCRIPTION | 33 ++++--- MD5 | 44 +++++---- NAMESPACE | 3 R/data.R | 28 +++++ R/imbalance.R | 197 ++++++++++++++++++++++++++++++------------ R/mwmote.R | 6 - R/neater.R | 10 +- R/pdfos.R | 6 - R/racog.R | 93 ++++++++++++++----- R/rwo.R | 6 - R/utils.R | 87 ++++++++++-------- README.md | 41 ++++++-- build/vignette.rds |binary data/banana.rda |only data/banana_orig.rda |only inst/doc/imbalance.Rmd | 6 - inst/doc/imbalance.pdf |binary man/banana.Rd |only man/imabalace.Rd | 20 ++-- man/imbalanceRatio.Rd |only man/oversample.Rd |only man/wracog.Rd | 25 ++++- src/neater.cpp | 3 tests/testthat/testRACOG.R | 4 tests/testthat/testwrappers.R |only vignettes/imbalance.Rmd | 6 - 26 files changed, 423 insertions(+), 195 deletions(-)
Title: A Helpful Way to Install R Packages Hosted on GitHub
Description: Provides an helpful way to install packages hosted on GitHub.
Author: Koji Makiyama [cre, aut],
Atsushi Hayakawa [ctb],
Shinya Uryu [ctb],
Hiroaki Yutani [ctb],
Nagi Teramo [ctb],
Kazuhiro Maeda [ctb]
Maintainer: Koji Makiyama <hoxo.smile@gmail.com>
Diff between githubinstall versions 0.2.1 dated 2016-11-21 and 0.2.2 dated 2018-02-18
DESCRIPTION | 19 LICENSE | 4 MD5 | 86 +-- NAMESPACE | 42 - NEWS.md | 51 + R/gh_install_packages.R | 206 ++++---- R/gh_list_packages.R | 42 - R/gh_search_packages.R | 36 - R/gh_show_source.R | 104 ++-- R/gh_suggest_username.R | 62 +- R/gh_sugget.R | 162 +++--- R/gh_update_package_list.R | 26 - R/my_stringr.R | 30 - R/network.R | 34 - R/utils.R | 34 - R/utils_for_install.R | 374 +++++++------- R/zzz.R | 12 README.md | 744 +++++++++++++++-------------- build/vignette.rds |binary inst/doc/githubinstall.R | 197 ++++--- inst/doc/githubinstall.Rmd | 633 ++++++++++++------------ inst/doc/githubinstall.html | 739 ++++++++++++++++++---------- man/gh_install_packages.Rd | 113 ++-- man/gh_list_packages.Rd | 47 - man/gh_search_packages.Rd | 51 - man/gh_show_source.Rd | 55 +- man/gh_suggest.Rd | 57 +- man/gh_suggest_username.Rd | 57 +- man/gh_update_package_list.Rd | 23 man/recommend_dependencies.Rd | 51 - man/reexports.Rd | 32 - man/remove_conflict_repos.Rd | 51 - man/select_repository.Rd | 35 - man/separate_into_package_and_reference.Rd | 45 - tests/testthat.R | 8 tests/testthat/test-gh_install_packages.R | 80 +-- tests/testthat/test-gh_list_packages.R | 14 tests/testthat/test-gh_search_packages.R | 14 tests/testthat/test-gh_suggest.R | 138 ++--- tests/testthat/test-gh_suggest_username.R | 26 - tests/testthat/test-really_install.R | 54 +- tests/testthat/test-utils.R | 30 - tests/testthat/test-utils_for_install.R | 517 +++++++++----------- vignettes/githubinstall.Rmd | 633 ++++++++++++------------ 44 files changed, 3021 insertions(+), 2747 deletions(-)
Title: Spatial and Network Based Individual Level Models for Epidemics
Description: Provides tools for simulating from discrete-time individual level models for infectious disease data analysis. This epidemic model class contains spatial and contact-network based models with two disease types: Susceptible-Infectious (SI) and Susceptible-Infectious-Removed (SIR).
Author: Vineetha Warriyar. K. V. and Rob Deardon
Maintainer: Vineetha Warriyar. K. V. <vineethawarriyar.kod@ucalgary.ca>
Diff between EpiILM versions 1.4 dated 2018-02-03 and 1.4.1 dated 2018-02-18
DESCRIPTION | 8 ++-- MD5 | 22 +++++------ R/epiBR0.r | 4 -- R/epidata.r | 33 +++++++++------- R/epidic.r | 3 - R/epilike.r | 3 - R/epimcmc.r | 3 - R/epispatial.r | 3 - man/epidata.Rd | 8 +++- src/EpiBR0.f95 | 7 +-- src/Epidata.f95 | 110 ++++++++++++++++++++++++++++++++++++++++++++++++-------- src/ini.c | 16 ++++---- 12 files changed, 146 insertions(+), 74 deletions(-)
Title: Embedded Conic Solver in R
Description: R interface to the Embedded COnic Solver (ECOS), an efficient
and robust C library for convex problems. Conic and equality
constraints can be specified in addition to integer and
boolean variable constraints for mixed-integer problems. This
R interface is inspired by the python interface and has
similar calling conventions.
Author: Anqi Fu [aut],
Balasubramanian Narasimhan [aut, cre]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Diff between ECOSolveR versions 0.3-2 dated 2017-09-25 and 0.4 dated 2018-02-18
ECOSolveR-0.3-2/ECOSolveR/src/ecos/__.SYMDEF |only ECOSolveR-0.3-2/ECOSolveR/src/ecos/ecos.ts |only ECOSolveR-0.4/ECOSolveR/DESCRIPTION | 8 +- ECOSolveR-0.4/ECOSolveR/MD5 | 46 ++++++------ ECOSolveR-0.4/ECOSolveR/R/ecos.R | 6 - ECOSolveR-0.4/ECOSolveR/R/firstlib.R | 2 ECOSolveR-0.4/ECOSolveR/README.md | 6 + ECOSolveR-0.4/ECOSolveR/build/vignette.rds |binary ECOSolveR-0.4/ECOSolveR/cleanup | 2 ECOSolveR-0.4/ECOSolveR/inst/doc/examples.html | 18 ++-- ECOSolveR-0.4/ECOSolveR/man/ecos.control.Rd | 2 ECOSolveR-0.4/ECOSolveR/src/ecos/CONTRIBUTING.md |only ECOSolveR-0.4/ECOSolveR/src/ecos/Makefile | 9 ++ ECOSolveR-0.4/ECOSolveR/src/ecos/README.md | 2 ECOSolveR-0.4/ECOSolveR/src/ecos/ecos-unix.mk | 24 ++++-- ECOSolveR-0.4/ECOSolveR/src/ecos/ecos-win.mk | 12 ++- ECOSolveR-0.4/ECOSolveR/src/ecos/ecos.mk | 24 ++++-- ECOSolveR-0.4/ECOSolveR/src/ecos/external/amd/Makefile | 2 ECOSolveR-0.4/ECOSolveR/src/ecos/external/ldl/Makefile | 2 ECOSolveR-0.4/ECOSolveR/src/ecos/include/ecos.h | 12 +++ ECOSolveR-0.4/ECOSolveR/src/ecos/include/splamm.h | 2 ECOSolveR-0.4/ECOSolveR/src/ecos/src/ecos.c | 55 ++++++++++++--- ECOSolveR-0.4/ECOSolveR/src/ecos/src/preproc.c | 62 +++++++++++++---- ECOSolveR-0.4/ECOSolveR/src/ecos/src/splamm.c | 7 + ECOSolveR-0.4/ECOSolveR/src/ecos/test/ecostester.c | 4 - ECOSolveR-0.4/ECOSolveR/src/ecos/test/updateData |only 26 files changed, 223 insertions(+), 84 deletions(-)
Title: Easily Carry Out Latent Profile Analysis
Description: An interface to the 'mclust' package to easily carry out latent profile
analysis ("LPA"). Provides functionality to estimate commonly-specified models.
Follows a tidy approach, in that output is in the form of a data frame that can
subsequently be computed on. Also has functions to interface to the commercial
'MPlus' software via the 'MplusAutomation' package.
Author: Joshua M Rosenberg [aut, cre],
Jennifer A Schmidt [ctb],
Patrick N Beymer [ctb],
Rebecca R Steingut [ctb]
Maintainer: Joshua M Rosenberg <jmichaelrosenberg@gmail.com>
Diff between tidyLPA versions 0.1.1 dated 2018-02-14 and 0.1.2 dated 2018-02-18
DESCRIPTION | 6 MD5 | 54 ++--- NAMESPACE | 1 NEWS.md | 15 + R/compare_solutions.R | 2 R/compare_solutions_mplus.R | 117 +++++------ R/estimate_profiles.R | 2 R/estimate_profiles_mplus.R | 24 +- R/helpers.R | 4 R/plot_profiles.R | 4 R/plot_profiles_mplus.R | 14 - README.md | 78 +++++-- build/vignette.rds |binary inst/doc/Introduction_to_tidyLPA.R | 48 +--- inst/doc/Introduction_to_tidyLPA.Rmd | 207 ++++++++++---------- inst/doc/Introduction_to_tidyLPA.html | 265 +++++++++++++++----------- man/compare_solutions.Rd | 4 man/compare_solutions_mplus.Rd | 9 man/estimate_profiles.Rd | 4 man/estimate_profiles_mplus.Rd | 4 man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |only man/plot_profiles.Rd | 6 man/plot_profiles_mplus.Rd | 6 man/reexports.Rd |only tests/testthat/test-compare_solutions_mplus.R | 14 - tests/testthat/test-create_profiles_mplus.R | 51 ++--- tests/testthat/test-plot_profiles_mplus.R | 14 - vignettes/Introduction_to_tidyLPA.Rmd | 207 ++++++++++---------- 29 files changed, 644 insertions(+), 516 deletions(-)
Title: Diagnostic and Prognostic Meta-Analysis
Description: Meta-analysis of diagnostic and prognostic modeling studies. Summarize estimates of prognostic factors, diagnostic test accuracy and prediction model performance. Validate, update and combine published prediction models. Develop new prediction models with data from multiple studies.
Author: Thomas Debray [aut, cre],
Valentijn de Jong [aut]
Maintainer: Thomas Debray <thomas.debray@gmail.com>
Diff between metamisc versions 0.1.7 dated 2017-11-20 and 0.1.8 dated 2018-02-18
metamisc-0.1.7/metamisc/man/rileyDA.Rd |only metamisc-0.1.7/metamisc/man/rileyES.Rd |only metamisc-0.1.8/metamisc/DESCRIPTION | 26 metamisc-0.1.8/metamisc/MD5 | 76 +- metamisc-0.1.8/metamisc/NAMESPACE | 121 ++- metamisc-0.1.8/metamisc/R/basics.r | 78 +- metamisc-0.1.8/metamisc/R/bugsmodels.r | 74 +- metamisc-0.1.8/metamisc/R/ccalc.r |only metamisc-0.1.8/metamisc/R/fat.r | 5 metamisc-0.1.8/metamisc/R/metapred.R | 37 - metamisc-0.1.8/metamisc/R/plot_utils.r |only metamisc-0.1.8/metamisc/R/riley.r | 617 +++++++++++++----- metamisc-0.1.8/metamisc/R/uvmeta.r | 299 ++++++-- metamisc-0.1.8/metamisc/R/valmeta.r | 682 ++++++++++++-------- metamisc-0.1.8/metamisc/R/valmeta_utils.r | 468 +++++++++++-- metamisc-0.1.8/metamisc/data/Collins.rda |binary metamisc-0.1.8/metamisc/data/DVTipd.rda |binary metamisc-0.1.8/metamisc/data/DVTmodels.rda |binary metamisc-0.1.8/metamisc/data/Daniels.rda |binary metamisc-0.1.8/metamisc/data/EuroSCORE.rda |binary metamisc-0.1.8/metamisc/data/Fibrinogen.rda |binary metamisc-0.1.8/metamisc/data/Framingham.rda |binary metamisc-0.1.8/metamisc/data/Kertai.rda |binary metamisc-0.1.8/metamisc/data/Roberts.rda |binary metamisc-0.1.8/metamisc/data/Scheidler.rda |binary metamisc-0.1.8/metamisc/inst/model/uvmeta_ranef.bug | 34 metamisc-0.1.8/metamisc/man/Daniels.Rd | 58 - metamisc-0.1.8/metamisc/man/ccalc.Rd |only metamisc-0.1.8/metamisc/man/coef.metapred.Rd |only metamisc-0.1.8/metamisc/man/forest.Rd |only metamisc-0.1.8/metamisc/man/logLik.riley.Rd | 76 +- metamisc-0.1.8/metamisc/man/metamisc-package.Rd | 6 metamisc-0.1.8/metamisc/man/metapred.Rd | 8 metamisc-0.1.8/metamisc/man/plot.fat.Rd | 1 metamisc-0.1.8/metamisc/man/plot.riley.Rd | 102 +- metamisc-0.1.8/metamisc/man/plot.uvmeta.Rd |only metamisc-0.1.8/metamisc/man/plot.valmeta.Rd | 44 - metamisc-0.1.8/metamisc/man/predict.riley.Rd | 59 - metamisc-0.1.8/metamisc/man/riley.Rd | 210 +++--- metamisc-0.1.8/metamisc/man/summary.riley.Rd | 78 +- metamisc-0.1.8/metamisc/man/summary.uvmeta.Rd | 77 -- metamisc-0.1.8/metamisc/man/uvmeta.Rd | 158 ++-- metamisc-0.1.8/metamisc/man/valmeta.Rd | 157 ++-- 43 files changed, 2371 insertions(+), 1180 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Christophe Dervieux [ctb],
Clifton Franklund [ctb],
Daniel Emaasit [ctb],
David Shuman [ctb],
Dean Attali [ctb],
Drew Tyre [ctb],
Frans van Dunne [ctb],
Hadley Wickham [ctb],
Jeff Allen [ctb],
Jennifer Bryan [ctb],
Jonathan McPhers [ctb],
Junwen Huang [ctb],
Kevin Cheung [ctb],
Kevin Ushey [ctb],
Kim Seonghyun [ctb],
Kirill Muller [ctb],
Luciano Selzer [ctb],
Matthew Lincoln [ctb],
Maximilian Held [ctb],
Michael Sachs [ctb],
Michal Bojanowski [ctb],
Peter Hickey [ctb],
Sahir Bhatnagar [ctb],
Steve Simpson [ctb],
Vincent Fulco [ctb],
Yixuan Qiu [ctb],
Zhuoer Dong [ctb],
RStudio Inc [cph],
Bartek Szopka [ctb] (The jQuery Highlight plugin),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/resources/AUTHORS),
MathQuill contributors [ctb] (The MathQuill library; authors listed in
inst/resources/AUTHORS),
FriendCode Inc [cph, ctb] (The gitbook style, with modifications)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.6 dated 2018-01-25 and 0.7 dated 2018-02-18
DESCRIPTION | 12 ++++--- MD5 | 22 ++++++------- NEWS.md | 10 +++++ R/ebook.R | 3 - R/gitbook.R | 8 ++-- R/latex.R | 11 ++---- R/skeleton.R | 2 - R/utils.R | 14 +------- R/word.R | 3 - README.md | 2 - inst/resources/gitbook/js/plugin-sharing.js | 8 ++++ inst/rstudio/templates/project/resources/06-references.Rmd | 2 - 12 files changed, 51 insertions(+), 46 deletions(-)
Title: Wrapper to the 'spaCy' 'NLP' Library
Description: An R wrapper to the 'Python' 'spaCy' 'NLP' library,
from <http://spacy.io>.
Author: Kenneth Benoit [aut, cre, cph],
Akitaka Matsuo [aut]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between spacyr versions 0.9.3 dated 2017-11-10 and 0.9.6 dated 2018-02-18
spacyr-0.9.3/spacyr/R/config.R |only spacyr-0.9.3/spacyr/inst/config_win |only spacyr-0.9.6/spacyr/DESCRIPTION | 16 spacyr-0.9.6/spacyr/MD5 | 39 - spacyr-0.9.6/spacyr/NEWS.md | 8 spacyr-0.9.6/spacyr/R/spacy_initialize.R | 145 ++++- spacyr-0.9.6/spacyr/R/spacy_parse.R | 13 spacyr-0.9.6/spacyr/README.md | 296 +++++++---- spacyr-0.9.6/spacyr/inst/doc/MAC.Rmd | 6 spacyr-0.9.6/spacyr/inst/doc/MAC.md | 24 spacyr-0.9.6/spacyr/inst/doc/WINDOWS.Rmd | 2 spacyr-0.9.6/spacyr/inst/doc/WINDOWS.md | 84 ++- spacyr-0.9.6/spacyr/inst/python/initialize_spacyPython.py | 5 spacyr-0.9.6/spacyr/man/find_spacy.Rd | 6 spacyr-0.9.6/spacyr/man/spacy_initialize.Rd | 15 spacyr-0.9.6/spacyr/man/spacy_parse.Rd | 8 spacyr-0.9.6/spacyr/man/spacyr-package.Rd | 4 spacyr-0.9.6/spacyr/tests/testthat/test-1-spacy_initialize.R | 1 spacyr-0.9.6/spacyr/tests/testthat/test-2-spacy_parse.R | 73 ++ spacyr-0.9.6/spacyr/tests/testthat/test-3-entity-functions.R | 10 spacyr-0.9.6/spacyr/tests/testthat/test-4-quanteda-methods.R | 7 spacyr-0.9.6/spacyr/tests/testthat/utils.R |only 22 files changed, 560 insertions(+), 202 deletions(-)
Title: Tools for Analyzing QTL Experiments
Description: Analysis of experimental crosses to identify genes
(called quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Author: Karl W Broman <kbroman@biostat.wisc.edu> and Hao Wu, with
ideas from Gary Churchill and Saunak Sen and contributions from
Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr
Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron
Wolen, and Brian Yandell
Maintainer: Karl W Broman <kbroman@biostat.wisc.edu>
Diff between qtl versions 1.41-6 dated 2017-06-12 and 1.42-7 dated 2018-02-18
qtl-1.41-6/qtl/vignettes/fancyheadings.sty |only qtl-1.42-7/qtl/DESCRIPTION | 12 qtl-1.42-7/qtl/MD5 | 147 +++++------ qtl-1.42-7/qtl/NAMESPACE | 4 qtl-1.42-7/qtl/R/bcsft.R | 20 + qtl-1.42-7/qtl/R/errorlod.R | 6 qtl-1.42-7/qtl/R/est.rf.R | 6 qtl-1.42-7/qtl/R/mqmpermutation.R | 10 qtl-1.42-7/qtl/R/mqmscan.R | 8 qtl-1.42-7/qtl/R/mqmutil.R | 8 qtl-1.42-7/qtl/R/plot.R | 14 - qtl-1.42-7/qtl/R/read.cross.R | 2 qtl-1.42-7/qtl/R/refineqtl.R | 14 - qtl-1.42-7/qtl/R/stepwiseqtl.R | 20 - qtl-1.42-7/qtl/R/summary.scanone.R | 52 +++ qtl-1.42-7/qtl/R/summary.scantwo.R | 10 qtl-1.42-7/qtl/build/vignette.rds |binary qtl-1.42-7/qtl/data/badorder.RData |binary qtl-1.42-7/qtl/data/bristle3.RData |binary qtl-1.42-7/qtl/data/bristleX.RData |binary qtl-1.42-7/qtl/data/fake.4way.RData |binary qtl-1.42-7/qtl/data/fake.bc.RData |binary qtl-1.42-7/qtl/data/fake.f2.RData |binary qtl-1.42-7/qtl/data/hyper.RData |binary qtl-1.42-7/qtl/data/listeria.RData |binary qtl-1.42-7/qtl/data/locations.RData |binary qtl-1.42-7/qtl/data/map10.RData |binary qtl-1.42-7/qtl/data/mapthis.RData |binary qtl-1.42-7/qtl/data/multitrait.RData |binary qtl-1.42-7/qtl/inst/INSTALL_ME.txt | 20 - qtl-1.42-7/qtl/inst/README.md | 4 qtl-1.42-7/qtl/inst/STATUS.txt | 57 +++- qtl-1.42-7/qtl/inst/doc/Sources/MQM/mqm/standard_seealso.txt | 4 qtl-1.42-7/qtl/inst/doc/bcsft.R | 21 - qtl-1.42-7/qtl/inst/doc/bcsft.Rnw | 24 + qtl-1.42-7/qtl/inst/doc/bcsft.pdf |binary qtl-1.42-7/qtl/inst/doc/rqtltour.pdf |binary qtl-1.42-7/qtl/inst/doc/rqtltour2.pdf |binary qtl-1.42-7/qtl/man/MQM.Rd | 54 ++-- qtl-1.42-7/qtl/man/a.starting.point.Rd | 10 qtl-1.42-7/qtl/man/addloctocross.Rd | 30 +- qtl-1.42-7/qtl/man/groupclusteredheatmap.Rd | 18 - qtl-1.42-7/qtl/man/mapthis.Rd | 12 qtl-1.42-7/qtl/man/mqmaugment.Rd | 36 +- qtl-1.42-7/qtl/man/mqmautocofactors.Rd | 28 +- qtl-1.42-7/qtl/man/mqmextractmarkers.Rd | 10 qtl-1.42-7/qtl/man/mqmfind.marker.Rd | 8 qtl-1.42-7/qtl/man/mqmgetmodel.Rd | 40 +- qtl-1.42-7/qtl/man/mqmpermutation.Rd | 14 - qtl-1.42-7/qtl/man/mqmplotcircle.Rd | 42 +-- qtl-1.42-7/qtl/man/mqmplotcistrans.Rd | 6 qtl-1.42-7/qtl/man/mqmplotclusteredheatmap.Rd | 12 qtl-1.42-7/qtl/man/mqmplotcofactors.Rd | 18 - qtl-1.42-7/qtl/man/mqmplotdirectedqtl.Rd | 20 - qtl-1.42-7/qtl/man/mqmplotheatmap.Rd | 12 qtl-1.42-7/qtl/man/mqmplotmultitrait.Rd | 12 qtl-1.42-7/qtl/man/mqmplotpermutations.Rd | 8 qtl-1.42-7/qtl/man/mqmplotsingletrait.Rd | 18 - qtl-1.42-7/qtl/man/mqmprocesspermutation.Rd | 10 qtl-1.42-7/qtl/man/mqmscan.Rd | 90 +++--- qtl-1.42-7/qtl/man/mqmscanall.Rd | 42 +-- qtl-1.42-7/qtl/man/mqmscanfdr.Rd | 54 ++-- qtl-1.42-7/qtl/man/mqmsetcofactors.Rd | 36 +- qtl-1.42-7/qtl/man/mqmtestnormal.Rd | 26 - qtl-1.42-7/qtl/man/plot.errorlod.Rd | 5 qtl-1.42-7/qtl/man/plot.geno.Rd | 15 - qtl-1.42-7/qtl/man/plot.info.Rd | 15 - qtl-1.42-7/qtl/man/plot.missing.Rd | 5 qtl-1.42-7/qtl/man/plot.pheno.Rd | 11 qtl-1.42-7/qtl/man/plot.pxg.Rd | 1 qtl-1.42-7/qtl/man/plot.rf.Rd | 1 qtl-1.42-7/qtl/man/read.cross.Rd | 10 qtl-1.42-7/qtl/man/simulateMissingData.Rd | 14 - qtl-1.42-7/qtl/man/summary.scanoneperm.Rd | 14 - qtl-1.42-7/qtl/vignettes/bcsft.Rnw | 24 + 75 files changed, 678 insertions(+), 566 deletions(-)
Title: Water Resources System Simulator
Description: Water resources system simulator is a tool for simulation and analysis of large-scale water resources systems.'WRSS' proposes functions and methods for construction, simulation and analysis of primary water resources features (e.g. reservoirs, aquifers, and etc.) based on Standard Operating Policy (SOP).
Author: Rezgar Arabzadeh; Parisa Aberi; Kaveh Panaghi; Shahab Araghinejad; Majid Montaseri
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>
Diff between WRSS versions 1.0 dated 2017-11-09 and 1.1 dated 2018-02-18
WRSS-1.0/WRSS/man/figures/ex1.pdf |only WRSS-1.0/WRSS/man/figures/ex1.png |only WRSS-1.0/WRSS/man/figures/ex2.pdf |only WRSS-1.0/WRSS/man/figures/ex2.png |only WRSS-1.0/WRSS/man/figures/ex3.pdf |only WRSS-1.0/WRSS/man/figures/ex3.png |only WRSS-1.0/WRSS/man/figures/ex4.pdf |only WRSS-1.0/WRSS/man/figures/ex4.png |only WRSS-1.0/WRSS/man/figures/ex5.pdf |only WRSS-1.0/WRSS/man/figures/ex5.png |only WRSS-1.0/WRSS/man/figures/ex6.pdf |only WRSS-1.0/WRSS/man/figures/ex6.png |only WRSS-1.0/WRSS/man/figures/legend.pdf |only WRSS-1.0/WRSS/man/figures/legend.png |only WRSS-1.1/WRSS/DESCRIPTION | 10 ++++---- WRSS-1.1/WRSS/MD5 | 25 ++++++---------------- WRSS-1.1/WRSS/man/WRSS-package.Rd | 6 ++--- WRSS-1.1/WRSS/man/addObjectToArea.Rd | 39 ++++------------------------------- WRSS-1.1/WRSS/man/aquiferRouting.Rd | 2 - WRSS-1.1/WRSS/man/figures/Fig.pdf |only WRSS-1.1/WRSS/man/figures/Fig.png |only WRSS-1.1/WRSS/man/figures/Thumbs.db |only 22 files changed, 21 insertions(+), 61 deletions(-)
Title: Tools for Electromyogram Signals (EMG) Analysis
Description: Data processing tools to compute the rectified, integrated and the averaged EMG. Routines for automatic detection of activation phases. A routine to compute and plot the ensemble average of the EMG. An EMG signal simulator for general purposes.
Author: J.A. Guerrero, J.E. Macias-Diaz
Maintainer: Antonio Guerrero <jaguerrero@correo.uaa.mx>
Diff between biosignalEMG versions 2.0.2 dated 2018-02-09 and 2.1.0 dated 2018-02-18
DESCRIPTION | 10 ++-- MD5 | 92 ++++++++++++++++++++++---------------------- NEWS | 6 ++ R/ANDP.R | 2 R/MNChPD.R | 2 R/PCE.R | 2 R/PR.R | 2 R/TD.R | 14 +++--- R/as.emg.R | 2 R/as.emg.data.frame.R | 2 R/as.emg.default.R | 2 R/as.emg.matrix.R | 2 R/as.emg.numeric.R | 2 R/biosignalEMG-internal.R | 2 R/dcbiasremoval.R | 2 R/eaemg.R | 5 +- R/emg.R | 2 R/envelope.R | 28 ++++++++++--- R/extractchannel.R | 2 R/highpass.R | 6 +- R/iemg.R | 6 +- R/integration.R | 2 R/is.emg.R | 2 R/loadABF1.R | 2 R/lowpass.R |only R/movingaverage.R | 14 ++++-- R/onoff_bonato.R | 4 - R/onoff_singlethres.R | 4 - R/phasestats.R | 20 ++++----- R/plot.eaemg.R | 2 R/plot.emg.R | 5 +- R/plot.iemg.R | 2 R/print.eaemg.R | 2 R/print.emg.R | 2 R/print.iemg.R | 2 R/print.summary.eaemg.R | 2 R/print.summary.emg.R | 2 R/print.summary.iemg.R | 2 R/rectification.R | 2 R/summary.eaemg.R | 2 R/summary.emg.R | 5 +- R/summary.iemg.R | 2 R/syntheticemg.R | 2 R/whitening.R | 2 man/biosignalEMG-package.Rd | 6 +- man/envelope.Rd | 35 ++++++++-------- man/highpass.Rd | 9 ++-- man/lowpass.Rd |only 48 files changed, 180 insertions(+), 147 deletions(-)