Title: React Helpers
Description: Make it easy to use 'React' in R with helper
dependency functions, embedded 'Babel' transpiler,
and examples.
Author: Facebook Inc [aut, cph] (React library in lib,
https://facebook.github.io/react; see AUTHORS for full list of
contributors),
Kent Russell [aut, cre] (R interface)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between reactR versions 0.1.4 dated 2017-11-22 and 0.2.0 dated 2018-02-20
DESCRIPTION | 8 LICENSE | 2 MD5 | 35 ++- NAMESPACE | 1 NEWS.md | 5 R/dependencies.R | 24 ++ R/meta.R | 2 README.md | 8 build/vignette.rds |binary inst/doc/intro_reactR.html | 8 inst/examples/antd.R | 10 - inst/examples/bizcharts.R |only inst/examples/blueprint.R | 8 inst/examples/semiotic.R | 6 inst/www/core-js |only inst/www/react/react-dom.min.js | 364 ++++++++++++++++++++-------------------- inst/www/react/react.min.js | 28 +-- man/html_dependency_corejs.Rd |only man/html_dependency_react.Rd | 5 19 files changed, 277 insertions(+), 237 deletions(-)
Title: Projecting Satellite-Derived Phenology in Space
Description: This takes in a series of multi-layer raster files and returns a phenology projection raster, following methodologies described in John (2016) <https://etda.libraries.psu.edu/catalog/13521clj5135>.
Author: Christian John [aut, cre]
Maintainer: Christian John <cjohn@ucdavis.edu>
Diff between phenomap versions 1.0.1 dated 2017-11-16 and 1.2.0 dated 2018-02-20
DESCRIPTION | 12 - MD5 | 17 +- NAMESPACE | 2 NEWS.md |only R/mapPheno.R | 253 +++++++++++++++++++++++------------ R/mapTrend.R |only inst/extdata/Sample_Greenup_2011.tif |only inst/extdata/Sample_Greenup_2012.tif |only inst/extdata/Sample_Greenup_2013.tif |only inst/extdata/Sample_Greenup_2014.tif |only inst/extdata/Sample_Greenup_2015.tif |only inst/extdata/Sample_Greenup_2016.tif |only man/mapPheno.Rd | 18 ++ man/mapTrend.Rd |only 14 files changed, 209 insertions(+), 93 deletions(-)
Title: Generate High-Resolution Venn and Euler Plots
Description: A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Author: Hanbo Chen
Maintainer: Paul Boutros <Paul.Boutros@oicr.on.ca>
Diff between VennDiagram versions 1.6.18 dated 2017-11-21 and 1.6.19 dated 2018-02-20
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 6 ++++++ R/draw.pairwise.venn.R | 6 ++++-- R/draw.quad.venn.R | 6 ++++-- R/draw.quintuple.venn.R | 6 ++++-- R/draw.triple.venn.R | 6 ++++-- 7 files changed, 32 insertions(+), 18 deletions(-)
Title: Regularized Principal Component Analysis for Spatial Data
Description: Provide regularized principal component analysis incorporating smoothness,
sparseness and orthogonality of eigenfunctions by using the alternating direction method of
multipliers algorithm (Wang and Huang, 2017, <DOI:10.1080/10618600.2016.1157483>). The method can be applied to either regularly or irregularly spaced
data, including 1D, 2D, and 3D.
Author: Wen-Ting Wang, Hsin-Cheng Huang
Maintainer: Wen-Ting Wang <egpivo@gmail.com>
Diff between SpatPCA versions 1.1.1.2 dated 2017-03-17 and 1.2.0.0 dated 2018-02-20
SpatPCA-1.1.1.2/SpatPCA/README.md |only SpatPCA-1.2.0.0/SpatPCA/DESCRIPTION | 14 +- SpatPCA-1.2.0.0/SpatPCA/MD5 | 20 +-- SpatPCA-1.2.0.0/SpatPCA/R/RcppExports.R | 10 + SpatPCA-1.2.0.0/SpatPCA/R/SpatPCA.R | 48 +++++--- SpatPCA-1.2.0.0/SpatPCA/man/SpatPCA-package.Rd | 6 - SpatPCA-1.2.0.0/SpatPCA/man/SpatPCAinternal4.Rd |only SpatPCA-1.2.0.0/SpatPCA/man/spatpca.Rd | 24 +++- SpatPCA-1.2.0.0/SpatPCA/src/Makevars | 4 SpatPCA-1.2.0.0/SpatPCA/src/Makevars.win | 5 SpatPCA-1.2.0.0/SpatPCA/src/RcppExports.cpp | 30 ++++- SpatPCA-1.2.0.0/SpatPCA/src/rcpp_SpatPCA.cpp | 139 +++++++++++++----------- 12 files changed, 190 insertions(+), 110 deletions(-)
Title: Model-Based Detection of Disease Clusters
Description: Model-based methods for the detection of disease clusters
using GLMs, GLMMs and zero-inflated models.
Author: Virgilio Gomez-Rubio, Paula Esther Moraga Serrano, Barry
Rowlingson
Maintainer: Virgilio Gomez-Rubio <virgilio.gomez@uclm.es>
Diff between DClusterm versions 0.1 dated 2017-02-12 and 0.2 dated 2018-02-20
DClusterm-0.1/DClusterm/R/Functions1PAU.R |only DClusterm-0.1/DClusterm/R/Functions2PAU.R |only DClusterm-0.1/DClusterm/R/glm.isclusterPAU.R |only DClusterm-0.1/DClusterm/inst/doc/jss_paper.R |only DClusterm-0.1/DClusterm/inst/doc/jss_paper.Rnw |only DClusterm-0.1/DClusterm/inst/doc/jss_paper.pdf |only DClusterm-0.1/DClusterm/man/PlotClustersNoOverlap.Rd |only DClusterm-0.1/DClusterm/vignettes/jss_paper.Rnw |only DClusterm-0.2/DClusterm/DESCRIPTION | 17 DClusterm-0.2/DClusterm/MD5 | 63 +-- DClusterm-0.2/DClusterm/NAMESPACE | 50 +- DClusterm-0.2/DClusterm/R/Functions1.R |only DClusterm-0.2/DClusterm/R/Functions2.R |only DClusterm-0.2/DClusterm/R/glm.iscluster.R |only DClusterm-0.2/DClusterm/R/knutils.R | 165 ++++---- DClusterm-0.2/DClusterm/build/vignette.rds |binary DClusterm-0.2/DClusterm/data/NY8.RData |binary DClusterm-0.2/DClusterm/data/NY8_clusters.RData |only DClusterm-0.2/DClusterm/data/Navarre.RData |binary DClusterm-0.2/DClusterm/data/brainNM.RData |binary DClusterm-0.2/DClusterm/data/brainNM_clusters.RData |only DClusterm-0.2/DClusterm/data/datalist |only DClusterm-0.2/DClusterm/inst/doc/DClusterm.R |only DClusterm-0.2/DClusterm/inst/doc/DClusterm.Rnw |only DClusterm-0.2/DClusterm/inst/doc/DClusterm.pdf |only DClusterm-0.2/DClusterm/man/CalcStatClusterGivenCenter.Rd | 10 DClusterm-0.2/DClusterm/man/CalcStatsAllClusters.Rd | 10 DClusterm-0.2/DClusterm/man/CreateGridDClusterm.Rd | 2 DClusterm-0.2/DClusterm/man/DetectClustersModel.Rd | 45 +- DClusterm-0.2/DClusterm/man/NY8.Rd | 14 DClusterm-0.2/DClusterm/man/SelectStatsAllClustersNoOverlap.Rd | 9 DClusterm-0.2/DClusterm/man/SetVbleCluster.Rd | 2 DClusterm-0.2/DClusterm/man/brainNM.Rd | 13 DClusterm-0.2/DClusterm/man/get.allknclusters.Rd |only DClusterm-0.2/DClusterm/man/get.stclusters.Rd | 19 DClusterm-0.2/DClusterm/man/glmAndZIP.iscluster.Rd | 14 DClusterm-0.2/DClusterm/man/knbinary.Rd | 18 DClusterm-0.2/DClusterm/man/mergeknclusters.Rd | 17 DClusterm-0.2/DClusterm/man/slimknclusters.Rd | 6 DClusterm-0.2/DClusterm/vignettes/DClusterm.Rnw |only DClusterm-0.2/DClusterm/vignettes/DClusterm.bib | 202 ++++++++-- DClusterm-0.2/DClusterm/vignettes/Makefile | 5 42 files changed, 466 insertions(+), 215 deletions(-)
Title: Data for "Forecasting: Principles and Practice" (2nd Edition)
Description: All data sets required for the examples and exercises
in the book "Forecasting: principles and practice"
by Rob J Hyndman and George Athanasopoulos <http://OTexts.org/fpp2/>.
All packages required to run the examples are also loaded.
Author: Rob Hyndman [aut, cre, cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between fpp2 versions 2.1 dated 2017-05-26 and 2.2 dated 2018-02-20
fpp2-2.1/fpp2/ChangeLog |only fpp2-2.1/fpp2/data/vn.rda |only fpp2-2.1/fpp2/man/vn.Rd |only fpp2-2.2/fpp2/DESCRIPTION | 12 ++-- fpp2-2.2/fpp2/MD5 | 95 +++++++++++++++++++------------------ fpp2-2.2/fpp2/NEWS.md |only fpp2-2.2/fpp2/R/fpp-package.R | 88 ++++++++++++++++++---------------- fpp2-2.2/fpp2/README.md | 9 +-- fpp2-2.2/fpp2/data/a10.rda |binary fpp2-2.2/fpp2/data/arrivals.rda |binary fpp2-2.2/fpp2/data/ausair.rda |binary fpp2-2.2/fpp2/data/ausbeer.rda |binary fpp2-2.2/fpp2/data/auscafe.rda |binary fpp2-2.2/fpp2/data/austa.rda |binary fpp2-2.2/fpp2/data/austourists.rda |binary fpp2-2.2/fpp2/data/calls.rda |binary fpp2-2.2/fpp2/data/debitcards.rda |binary fpp2-2.2/fpp2/data/departures.rda |binary fpp2-2.2/fpp2/data/elecdaily.rda |only fpp2-2.2/fpp2/data/elecdemand.rda |binary fpp2-2.2/fpp2/data/elecequip.rda |binary fpp2-2.2/fpp2/data/elecsales.rda |binary fpp2-2.2/fpp2/data/euretail.rda |binary fpp2-2.2/fpp2/data/gasoline.rda |binary fpp2-2.2/fpp2/data/goog.rda |binary fpp2-2.2/fpp2/data/goog200.rda |only fpp2-2.2/fpp2/data/guinearice.rda |binary fpp2-2.2/fpp2/data/h02.rda |binary fpp2-2.2/fpp2/data/hyndsight.rda |binary fpp2-2.2/fpp2/data/insurance.rda |binary fpp2-2.2/fpp2/data/livestock.rda |binary fpp2-2.2/fpp2/data/marathon.rda |binary fpp2-2.2/fpp2/data/maxtemp.rda |binary fpp2-2.2/fpp2/data/melsyd.rda |binary fpp2-2.2/fpp2/data/mens400.rda |binary fpp2-2.2/fpp2/data/oil.rda |binary fpp2-2.2/fpp2/data/prison.rda |only fpp2-2.2/fpp2/data/prisonLF.rda |only fpp2-2.2/fpp2/data/qauselec.rda |binary fpp2-2.2/fpp2/data/qcement.rda |binary fpp2-2.2/fpp2/data/qgas.rda |binary fpp2-2.2/fpp2/data/sunspotarea.rda |binary fpp2-2.2/fpp2/data/uschange.rda |binary fpp2-2.2/fpp2/data/usmelec.rda |binary fpp2-2.2/fpp2/data/visnights.rda |only fpp2-2.2/fpp2/data/wmurders.rda |binary fpp2-2.2/fpp2/man/ausair.Rd | 2 fpp2-2.2/fpp2/man/auscafe.Rd | 2 fpp2-2.2/fpp2/man/elecdemand.Rd | 12 +++- fpp2-2.2/fpp2/man/goog.Rd | 6 +- fpp2-2.2/fpp2/man/h02.Rd | 2 fpp2-2.2/fpp2/man/prison.Rd |only fpp2-2.2/fpp2/man/sunspotarea.Rd | 2 fpp2-2.2/fpp2/man/visnights.Rd |only 54 files changed, 127 insertions(+), 103 deletions(-)
Title: Chi-Square and Exact Tests for Model-Free Functional Dependency
Description: Statistical hypothesis testing methods for
model-free functional dependency using asymptotic
chi-square or exact distributions. Functional chi-squares are
asymmetric and functionally optimal, unique from other related
statistics. Tests in this package reveal evidence for causality
based on the causality-by-functionality principle. They include
asymptotic functional chi-square tests, an exact functional
test, a comparative functional chi-square test, and also a
comparative chi-square test. The normalized non-constant
functional chi-square test was used by Best Performer
NMSUSongLab in HPN-DREAM (DREAM8) Breast Cancer Network
Inference Challenges. For continuous data, these tests offer an
advantage over regression analysis when a parametric functional
form cannot be assumed; for categorical data, they provide a
novel means to assess directional dependency not possible with
symmetrical Pearson's chi-square or Fisher's exact tests.
Author: Yang Zhang [aut],
Hua Zhong [aut],
Ruby Sharma [aut],
Sajal Kumar [aut],
Joe Song [aut, cre]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between FunChisq versions 2.4.4 dated 2018-02-06 and 2.4.5 dated 2018-02-20
DESCRIPTION | 8 +++--- MD5 | 24 +++++++++--------- NEWS | 7 +++++ R/FunChisq.R | 7 +++-- R/RcppExports.R | 4 +-- inst/CITATION | 6 ++-- inst/doc/exact.fun.test.html | 4 +-- inst/doc/fun.chisq.test.html | 4 +-- man/FunChisq-package.Rd | 6 +++- man/fun.chisq.test.Rd | 12 ++++++--- src/RcppExports.cpp | 7 +++-- src/main.cpp | 17 +++++++------ tests/testthat/test_FunChisq.R | 52 ++++++++++++++++++++++++++--------------- 13 files changed, 96 insertions(+), 62 deletions(-)
Title: NPLS Regression with L1 Penalization
Description: Tools for performing variable selection in three-way data using N-PLS
in combination with L1 penalization. The N-PLS model (Rasmus Bro, 1996
<DOI:10.1002/(SICI)1099-128X(199601)10:1%3C47::AID-CEM400%3E3.0.CO;2-C>) is the
natural extension of PLS (Partial Least Squares) to N-way structures, and tries
to maximize the covariance between X and Y data arrays. The package also adds
variable selection through L1 penalization.
Author: David Hervas
Maintainer: David Hervas <ddhervas@yahoo.es>
Diff between sNPLS versions 0.3.0 dated 2017-10-29 and 0.3.31 dated 2018-02-20
DESCRIPTION | 6 ++--- MD5 | 17 ++++++++------- NAMESPACE | 1 R/sNPLS_fit.R | 57 +++++++++++++++++++++++++++++++++++++--------------- README.md | 2 + man/cv_fit.Rd | 4 ++- man/cv_snpls.Rd | 5 +++- man/fitted.sNPLS.Rd |only man/repeat_cv.Rd | 2 - man/sNPLS.Rd | 9 ++++++++ 10 files changed, 73 insertions(+), 30 deletions(-)
Title: High-Throughput Screening for Plate Based Essays
Description: Can be used to carry out extraction, normalization, quality control (QC), candidate hits identification and visualization for plate based essays, in drug discovery. This project was funded by the Division of Allergy, Immunology, and Transplantation, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under contract No. HHSN272201400054C entitled "Adjuvant Discovery For Vaccines Against West Nile Virus and Influenza", awarded to Duke University and lead by Drs. Herman Staats and Soman Abraham.
Author: Ivo D. Shterev [aut, cre],
Cliburn Chan [aut],
Gregory D. Sempowski [aut]
Maintainer: Ivo D. Shterev <i.shterev@duke.edu>
Diff between highSCREEN versions 0.1 dated 2016-05-03 and 0.2 dated 2018-02-20
DESCRIPTION | 12 - MD5 | 53 ++-- NEWS |only R/extractplate.R | 40 +-- R/formatRESULT.R | 20 - R/hits.R | 8 R/normplate.R | 26 +- R/plotcont.R | 2 R/plotplate.R | 5 R/qcplate.R | 17 - R/rankhits.R | 30 +- R/zfactor.ssmd.R | 40 +-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/highSCREENmanual.R | 439 +++++++++++++++++++-------------------- inst/doc/highSCREENmanual.Rnw | 455 ++++++++++++++++++++--------------------- inst/doc/highSCREENmanual.pdf |binary man/extractplate.Rd | 42 +-- man/formatRESULT.Rd | 88 +++---- man/highSCREEN-package.Rd | 14 - man/hits.Rd | 98 ++++---- man/normplate.Rd | 58 ++--- man/plotcont.Rd | 78 +++---- man/plotplate.Rd | 78 +++---- man/qcplate.Rd | 70 +++--- man/rankhits.Rd | 106 ++++----- man/zfactor.ssmd.Rd | 59 ++--- vignettes/highSCREENmanual.Rnw | 455 ++++++++++++++++++++--------------------- 28 files changed, 1140 insertions(+), 1153 deletions(-)
Title: Detection and Control of Tree-Ring Widths on Scanned Image
Sections
Description: Identification of ring borders on scanned image sections from dendrochronological samples. Processing of image reflectances to produce gray matrices and time series of smoothed gray values. Luminance data is plotted on segmented images for users to perform both: visual identification of ring borders or control of automatic detection. Routines to visually include/exclude ring borders on the R graphical devices, or automatically detect ring borders using a linear detection algorithm. This algorithm detects ring borders according to positive/negative extreme values in the smoothed time-series of gray values. Most of the in-package routines can be recursively implemented using the multiDetect() function.
Author: Wilson Lara, Carlos Sierra, Felipe Bravo
Maintainer: Wilson Lara <wilarhen@gmail.com>
Diff between measuRing versions 0.4.2 dated 2018-01-29 and 0.5 dated 2018-02-20
DESCRIPTION | 12 +- MD5 | 38 +++--- NAMESPACE | 2 NEWS | 9 + R/colNarrow.R | 5 R/crossRings.R | 36 +++--- R/dataSegments.R | 1 R/multiDetect.R | 46 +++---- R/plotSegments.R | 6 - R/ringDetect.R | 280 +++++++++++++++++++++++++++++++++-------------- R/ringSelect.R | 182 ++++++++++++++++-------------- R/zzz.R |only build/partial.rdb |binary inst/CITATION |only man/colNarrow.Rd | 5 man/crossRings.Rd | 24 ++-- man/measuRing-package.Rd | 2 man/multiDetect.Rd | 36 ++---- man/plotSegments.Rd | 4 man/ringDetect.Rd | 149 +++++++++++++++++++++---- man/ringSelect.Rd | 47 ++++--- 21 files changed, 568 insertions(+), 316 deletions(-)
Title: Maximum Likelihood Analysis of Circular Data
Description: A series of wrapper functions to
implement the 10 maximum likelihood models of animal orientation
described by Schnute and Groot (1992) <DOI:10.1016/S0003-3472(05)80068-5>. The
functions also include the ability to use different optimizer
methods and calculate various model selection metrics (i.e., AIC,
AICc, BIC).
Author: Robert Fitak [aut, cre],
Sönke Johnsen [aut]
Maintainer: Robert Fitak <rfitak9@gmail.com>
Diff between CircMLE versions 0.2.0 dated 2017-06-29 and 0.2.1 dated 2018-02-20
DESCRIPTION | 8 ++++---- MD5 | 6 ++++-- R/plot_circMLE.r | 10 +++++----- README.md |only inst |only 5 files changed, 13 insertions(+), 11 deletions(-)
Title: Inequality, Welfare and Poverty Indices and Curves using the
EU-SILC Data
Description: R tools to measure and compare inequality, welfare and poverty using the EU statistics on income and living conditions surveys.
Author: Angel Berihuete [aut, cre],
Carmen Dolores Ramos [aut],
Miguel Angel Sordo [aut]
Maintainer: Angel Berihuete <angel.berihuete@uca.es>
Diff between rtip versions 1.0.0 dated 2016-06-02 and 1.1.0 dated 2018-02-20
DESCRIPTION | 10 +++--- MD5 | 86 ++++++++++++++++++++++++++-------------------------- R/LCS2014-data.R | 2 - R/OmegaGL.R | 38 +++++++++++++--------- R/OmegaTIP.R | 33 +++++++++++++------ R/arpr.R | 42 ++++++++++++++++++------- R/arpt.R | 37 ++++++++++++++-------- R/gini.R | 33 ++++++++++++++----- R/lc.R | 66 +++++++++++++++++++++++++++------------ R/loadEUSILC.R | 4 +- R/loadLCS.R | 29 ++++++++--------- R/mih.R | 30 ++++++++++++------ R/mip.R | 37 ++++++++++++++++------ R/miuc.R | 33 ++++++++++++++----- R/qsr.R | 32 +++++++++++++------ R/rmpg.R | 42 +++++++++++++++++-------- R/s1.R | 55 +++++++++++++++++++++++---------- R/s2.R | 43 ++++++++++++++++++-------- R/setupDataset.R | 69 ++++++++++++++++++----------------------- R/testGL.R | 32 ++++++++++++++----- R/testTIP.R | 54 +++++++++++++++++++++++--------- R/tip.R | 79 +++++++++++++++++++++++++++++------------------ README.md | 20 +++++++++++- man/LCS2014.Rd | 3 - man/OmegaGL.Rd | 30 ++++++++++-------- man/OmegaTIP.Rd | 26 +++++++++------ man/arpr.Rd | 30 ++++++++++-------- man/arpt.Rd | 28 ++++++++++------ man/eusilc2.Rd | 1 man/gini.Rd | 26 +++++++++------ man/lc.Rd | 24 +++++++++----- man/loadEUSILC.Rd | 3 - man/loadLCS.Rd | 9 ++--- man/mih.Rd | 24 +++++++++----- man/mip.Rd | 29 ++++++++++++----- man/miuc.Rd | 28 ++++++++++------ man/qsr.Rd | 26 +++++++++------ man/rmpg.Rd | 30 ++++++++++-------- man/s1.Rd | 36 ++++++++++++--------- man/s2.Rd | 32 +++++++++++-------- man/setupDataset.Rd | 27 +++++++--------- man/testGL.Rd | 22 ++++++++----- man/testTIP.Rd | 28 ++++++++++------ man/tip.Rd | 30 +++++++++++------- 44 files changed, 882 insertions(+), 516 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-08 0.31
2016-08-05 0.30
2016-06-04 0.27
2016-05-17 0.26
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-19 0.1.3
2016-09-19 0.1.2
2016-06-28 0.1.1
2016-04-05 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-26 1.1.0
Title: Age-Depth Modelling using Bayesian Statistics
Description: Bacon is an approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for deposits, through combining radiocarbon and other dates with prior information. See Blaauw & Christen (2011) <doi:10.1214/11-BA618>.
Author: Maarten Blaauw [aut, cre],
J. Andres Christen [aut],
Judith Esquivel Vazquez [ctb],
Ted Belding [cph],
James Theiler [cph],
Brian Gough [cph],
Charles Karney [cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rbacon versions 2.3.2 dated 2018-02-04 and 2.3.3 dated 2018-02-20
DESCRIPTION | 8 - MD5 | 20 +- NAMESPACE | 1 NEWS.md | 10 + R/Bacon.R | 396 +++++++++++++++++++++++++++++++++------------------ man/Bacon.Age.d.Rd | 5 man/Bacon.Rd | 4 man/Baconvergence.Rd | 6 man/agedepth.Rd | 26 +-- man/calib.plot.Rd | 5 man/rbacon.Rd | 4 11 files changed, 311 insertions(+), 174 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') to store and manage
temporal-context data in a data-centric format, which is built on top of
the 'tibble'. The 'tsibble' aims at manipulating and analysing temporal data
in a tidy and modern manner, including easily interpolate missing values,
aggregate over calendar periods, performing rolling window calculations,
and etc.
Author: Earo Wang [aut, cre],
Di Cook [aut, ths],
Rob Hyndman [aut, ths]
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 0.1.2 dated 2018-01-27 and 0.1.3 dated 2018-02-20
DESCRIPTION | 11 +- MD5 | 62 ++++++------- NAMESPACE | 22 +++- NEWS.md | 18 +++ R/as-tsibble.R | 27 +++-- R/dplyr-verbs.R | 32 ++++-- R/format.R | 7 - R/parse-key.R | 17 +-- R/subset.R | 7 + R/tidyr-verbs.R | 4 R/tsummarise.R | 147 +++++++++++++++++++++++++++----- R/type-sum.R | 3 R/window.R | 179 ++++++++++++++++++++++----------------- README.md | 34 +++---- inst/doc/intro-tsibble.R | 11 +- inst/doc/intro-tsibble.Rmd | 13 +- inst/doc/intro-tsibble.html | 40 ++++---- man/col-verb.Rd | 6 + man/slide.Rd | 52 +++++++---- man/stretch.Rd | 31 ++++-- man/tile.Rd | 37 +++++--- man/tsibble.Rd | 8 - man/tsummarise.Rd | 76 +++++++++++++++- tests/testthat/test-dplyr.R | 37 +++++--- tests/testthat/test-fill-na.R | 6 - tests/testthat/test-join.R | 2 tests/testthat/test-subset.R | 2 tests/testthat/test-tsibble-ts.R | 4 tests/testthat/test-tsibble.R | 20 ++-- tests/testthat/test-tsummarise.R | 64 +++++++++++++ tests/testthat/test-window.R | 24 ++--- vignettes/intro-tsibble.Rmd | 13 +- 32 files changed, 699 insertions(+), 317 deletions(-)
Title: Simulation of Longitudinal Data
Description: Simulation and visualization of complex
models for longitudinal data. The models are encoded using the model coding
language 'Mlxtran', automatically converted into C++ codes, compiled on the
fly and linked to R using the 'Rcpp' package. That allows one to implement
very easily complex ODE-based models and complex statistical models,
including mixed effects models, for continuous, count, categorical, and
time-to-event data.
Author: Marc Lavielle [aut, cre]
Maintainer: Marc Lavielle <Marc.Lavielle@inria.fr>
Diff between mlxR versions 3.2.0 dated 2017-04-29 and 3.3.0 dated 2018-02-20
mlxR-3.2.0/mlxR/R/mlxDataReaderRLibraryBuilder.R |only mlxR-3.2.0/mlxR/R/mlxtoolboxReadData.R |only mlxR-3.2.0/mlxR/R/patch303.R |only mlxR-3.2.0/mlxR/man/mlxtoolboxReadData.Rd |only mlxR-3.3.0/mlxR/DESCRIPTION | 12 mlxR-3.3.0/mlxR/MD5 | 51 mlxR-3.3.0/mlxR/NAMESPACE | 1 mlxR-3.3.0/mlxR/R/addFieldsFromHeader.R | 2 mlxR-3.3.0/mlxR/R/convertmlx.R | 17 mlxR-3.3.0/mlxR/R/exposure.R | 6 mlxR-3.3.0/mlxR/R/hformat.R | 241 -- mlxR-3.3.0/mlxR/R/initMlxLibrary.R | 293 +-- mlxR-3.3.0/mlxR/R/inlineModel.R | 48 mlxR-3.3.0/mlxR/R/kmplotmlx.R | 176 +- mlxR-3.3.0/mlxR/R/mlxComputeRLibraryBuilder.R | 150 + mlxR-3.3.0/mlxR/R/mlxplore.R | 9 mlxR-3.3.0/mlxR/R/monolix2simulx.R | 524 +++--- mlxR-3.3.0/mlxR/R/prctilemlx.R | 10 mlxR-3.3.0/mlxR/R/processing_monolix.R | 1964 +++++++++++------------ mlxR-3.3.0/mlxR/R/readdatamlx.R | 1103 ++++++------ mlxR-3.3.0/mlxR/R/shinymlx.R | 11 mlxR-3.3.0/mlxR/R/simulx.R | 471 ++--- mlxR-3.3.0/mlxR/R/statmlx.R | 2 mlxR-3.3.0/mlxR/R/toolsmlx.R | 44 mlxR-3.3.0/mlxR/R/translateIOV.R |only mlxR-3.3.0/mlxR/R/writeDatamlx.R | 4 mlxR-3.3.0/mlxR/man/inlineModel.Rd | 32 mlxR-3.3.0/mlxR/man/prctilemlx.Rd | 4 mlxR-3.3.0/mlxR/man/simulx.Rd | 6 29 files changed, 2762 insertions(+), 2419 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between rlang versions 0.1.6 dated 2017-12-21 and 0.2.0 dated 2018-02-20
rlang-0.1.6/rlang/R/dictionary.R |only rlang-0.1.6/rlang/R/expr-lang.R |only rlang-0.1.6/rlang/R/expr-node.R |only rlang-0.1.6/rlang/R/expr-sym.R |only rlang-0.1.6/rlang/R/quo-unquote.R |only rlang-0.1.6/rlang/R/quos.R |only rlang-0.1.6/rlang/R/vector-chr.R |only rlang-0.1.6/rlang/R/vector-coercion.R |only rlang-0.1.6/rlang/R/vector-ctor.R |only rlang-0.1.6/rlang/R/vector-missing.R |only rlang-0.1.6/rlang/R/vector-raw.R |only rlang-0.1.6/rlang/R/vector-squash.R |only rlang-0.1.6/rlang/R/vector-utils.R |only rlang-0.1.6/rlang/build |only rlang-0.1.6/rlang/inst |only rlang-0.1.6/rlang/man/dots_list.Rd |only rlang-0.1.6/rlang/man/expr.Rd |only rlang-0.1.6/rlang/man/is_quosure.Rd |only rlang-0.1.6/rlang/man/lang_args.Rd |only rlang-0.1.6/rlang/man/lang_fn.Rd |only rlang-0.1.6/rlang/man/lang_name.Rd |only rlang-0.1.6/rlang/man/lang_standardise.Rd |only rlang-0.1.6/rlang/man/new_cnd.Rd |only rlang-0.1.6/rlang/man/pairlist.Rd |only rlang-0.1.6/rlang/man/quo-predicates.Rd |only rlang-0.1.6/rlang/man/quosures.Rd |only rlang-0.1.6/rlang/man/vector-along.Rd |only rlang-0.1.6/rlang/man/vector-len.Rd |only rlang-0.1.6/rlang/src/attrs.c |only rlang-0.1.6/rlang/src/env.c |only rlang-0.1.6/rlang/src/eval.c |only rlang-0.1.6/rlang/src/export.h |only rlang-0.1.6/rlang/src/formula.c |only rlang-0.1.6/rlang/src/formula.h |only rlang-0.1.6/rlang/src/init.c |only rlang-0.1.6/rlang/src/lang.c |only rlang-0.1.6/rlang/src/pairlist.c |only rlang-0.1.6/rlang/src/replace-na.c |only rlang-0.1.6/rlang/src/sexp.c |only rlang-0.1.6/rlang/src/splice.c |only rlang-0.1.6/rlang/src/symbol.c |only rlang-0.1.6/rlang/src/unquote.c |only rlang-0.1.6/rlang/src/utils.c |only rlang-0.1.6/rlang/src/utils.h |only rlang-0.1.6/rlang/src/vector.h |only rlang-0.1.6/rlang/tests/testthat/test-lang-call.R |only rlang-0.1.6/rlang/tests/testthat/test-lang-expr.R |only rlang-0.1.6/rlang/tests/testthat/test-lang.R |only rlang-0.1.6/rlang/tests/testthat/test-quo-enquo.R |only rlang-0.1.6/rlang/tests/testthat/test-quosure.R |only rlang-0.1.6/rlang/tests/testthat/test-tidy-capture.R |only rlang-0.1.6/rlang/tests/testthat/test-tidy-eval.R |only rlang-0.1.6/rlang/tests/testthat/test-tidy-unquote.R |only rlang-0.1.6/rlang/tests/testthat/test-types-coercion.R |only rlang-0.1.6/rlang/tests/testthat/test-vector.R |only rlang-0.1.6/rlang/vignettes |only rlang-0.2.0/rlang/DESCRIPTION | 15 rlang-0.2.0/rlang/MD5 | 467 ++++++---- rlang-0.2.0/rlang/NAMESPACE | 106 ++ rlang-0.2.0/rlang/NEWS.md | 398 +++++++++ rlang-0.2.0/rlang/R/arg.R | 117 ++ rlang-0.2.0/rlang/R/attr.R | 54 + rlang-0.2.0/rlang/R/c-api.R |only rlang-0.2.0/rlang/R/call.R |only rlang-0.2.0/rlang/R/cnd-handlers.R | 4 rlang-0.2.0/rlang/R/cnd-restarts.R | 4 rlang-0.2.0/rlang/R/cnd.R | 195 +++- rlang-0.2.0/rlang/R/compat-lazyeval.R | 30 rlang-0.2.0/rlang/R/compat-purrr.R | 27 rlang-0.2.0/rlang/R/deparse.R |only rlang-0.2.0/rlang/R/dots.R | 387 ++++---- rlang-0.2.0/rlang/R/env.R | 291 +++++- rlang-0.2.0/rlang/R/eval-tidy.R | 583 ++++++------- rlang-0.2.0/rlang/R/eval.R | 117 +- rlang-0.2.0/rlang/R/events.R |only rlang-0.2.0/rlang/R/expr.R | 221 ++--- rlang-0.2.0/rlang/R/fn.R | 173 +++- rlang-0.2.0/rlang/R/formula.R | 94 +- rlang-0.2.0/rlang/R/lifecycle-retired.R |only rlang-0.2.0/rlang/R/lifecycle.R |only rlang-0.2.0/rlang/R/node.R |only rlang-0.2.0/rlang/R/operators.R | 64 - rlang-0.2.0/rlang/R/parse.R | 58 - rlang-0.2.0/rlang/R/quasiquotation.R |only rlang-0.2.0/rlang/R/quo.R | 734 ++++++++--------- rlang-0.2.0/rlang/R/quotation.R |only rlang-0.2.0/rlang/R/rlang.R | 8 rlang-0.2.0/rlang/R/s3.R |only rlang-0.2.0/rlang/R/sexp.R |only rlang-0.2.0/rlang/R/stack.R | 91 +- rlang-0.2.0/rlang/R/state.R |only rlang-0.2.0/rlang/R/sym.R |only rlang-0.2.0/rlang/R/types.R | 130 ++- rlang-0.2.0/rlang/R/utils.R | 157 +++ rlang-0.2.0/rlang/R/vec-bytes.R |only rlang-0.2.0/rlang/R/vec-chr.R |only rlang-0.2.0/rlang/R/vec-coerce.R |only rlang-0.2.0/rlang/R/vec-na.R |only rlang-0.2.0/rlang/R/vec-new.R |only rlang-0.2.0/rlang/R/vec-squash.R |only rlang-0.2.0/rlang/R/vec-utils.R |only rlang-0.2.0/rlang/R/vec.R |only rlang-0.2.0/rlang/README.md | 43 rlang-0.2.0/rlang/man/abort.Rd | 3 rlang-0.2.0/rlang/man/are_na.Rd | 2 rlang-0.2.0/rlang/man/as_bytes.Rd | 9 rlang-0.2.0/rlang/man/as_data_mask.Rd |only rlang-0.2.0/rlang/man/as_env.Rd | 37 rlang-0.2.0/rlang/man/as_environment.Rd |only rlang-0.2.0/rlang/man/as_function.Rd | 2 rlang-0.2.0/rlang/man/as_overscope.Rd | 121 -- rlang-0.2.0/rlang/man/as_pairlist.Rd | 13 rlang-0.2.0/rlang/man/as_quosure.Rd | 69 - rlang-0.2.0/rlang/man/as_utf8_character.Rd | 8 rlang-0.2.0/rlang/man/box.Rd |only rlang-0.2.0/rlang/man/call2.Rd |only rlang-0.2.0/rlang/man/call_args.Rd |only rlang-0.2.0/rlang/man/call_fn.Rd |only rlang-0.2.0/rlang/man/call_modify.Rd |only rlang-0.2.0/rlang/man/call_name.Rd |only rlang-0.2.0/rlang/man/call_standardise.Rd |only rlang-0.2.0/rlang/man/caller_env.Rd | 11 rlang-0.2.0/rlang/man/catch_cnd.Rd |only rlang-0.2.0/rlang/man/chr_unserialise_unicode.Rd |only rlang-0.2.0/rlang/man/cnd.Rd |only rlang-0.2.0/rlang/man/cnd_signal.Rd | 34 rlang-0.2.0/rlang/man/deprecated-cnd.Rd |only rlang-0.2.0/rlang/man/dictionary.Rd | 23 rlang-0.2.0/rlang/man/dots_definitions.Rd |only rlang-0.2.0/rlang/man/dots_values.Rd | 12 rlang-0.2.0/rlang/man/duplicate.Rd | 7 rlang-0.2.0/rlang/man/env.Rd | 26 rlang-0.2.0/rlang/man/env_bind.Rd | 55 - rlang-0.2.0/rlang/man/env_bind_exprs.Rd |only rlang-0.2.0/rlang/man/env_bury.Rd | 11 rlang-0.2.0/rlang/man/env_clone.Rd | 2 rlang-0.2.0/rlang/man/env_depth.Rd | 2 rlang-0.2.0/rlang/man/env_get.Rd | 11 rlang-0.2.0/rlang/man/env_has.Rd | 2 rlang-0.2.0/rlang/man/env_inherits.Rd | 2 rlang-0.2.0/rlang/man/env_names.Rd | 4 rlang-0.2.0/rlang/man/env_parent.Rd | 8 rlang-0.2.0/rlang/man/env_poke.Rd |only rlang-0.2.0/rlang/man/env_unbind.Rd | 2 rlang-0.2.0/rlang/man/eval_bare.Rd | 87 +- rlang-0.2.0/rlang/man/eval_tidy.Rd | 144 +-- rlang-0.2.0/rlang/man/eval_tidy_.Rd | 42 rlang-0.2.0/rlang/man/expr_interp.Rd | 8 rlang-0.2.0/rlang/man/expr_print.Rd |only rlang-0.2.0/rlang/man/exprs_auto_name.Rd | 6 rlang-0.2.0/rlang/man/figures |only rlang-0.2.0/rlang/man/flatten.Rd | 2 rlang-0.2.0/rlang/man/fn_body.Rd |only rlang-0.2.0/rlang/man/fn_fmls.Rd | 33 rlang-0.2.0/rlang/man/frame_position.Rd | 10 rlang-0.2.0/rlang/man/friendly_type.Rd | 8 rlang-0.2.0/rlang/man/get_env.Rd | 17 rlang-0.2.0/rlang/man/inherits_any.Rd |only rlang-0.2.0/rlang/man/invoke.Rd | 13 rlang-0.2.0/rlang/man/is_call.Rd |only rlang-0.2.0/rlang/man/is_callable.Rd | 16 rlang-0.2.0/rlang/man/is_expr.Rd | 108 -- rlang-0.2.0/rlang/man/is_expression.Rd |only rlang-0.2.0/rlang/man/is_formula.Rd | 21 rlang-0.2.0/rlang/man/is_integerish.Rd | 6 rlang-0.2.0/rlang/man/is_lang.Rd | 62 - rlang-0.2.0/rlang/man/is_namespace.Rd |only rlang-0.2.0/rlang/man/is_pairlist.Rd | 27 rlang-0.2.0/rlang/man/is_quosureish.Rd |only rlang-0.2.0/rlang/man/is_symbol.Rd | 6 rlang-0.2.0/rlang/man/lang.Rd | 82 - rlang-0.2.0/rlang/man/lang_head.Rd | 30 rlang-0.2.0/rlang/man/lang_modify.Rd | 73 - rlang-0.2.0/rlang/man/lifecycle.Rd |only rlang-0.2.0/rlang/man/missing.Rd | 4 rlang-0.2.0/rlang/man/missing_arg.Rd | 111 +- rlang-0.2.0/rlang/man/modify.Rd | 14 rlang-0.2.0/rlang/man/mut_node_car.Rd |only rlang-0.2.0/rlang/man/mut_utf8_locale.Rd | 10 rlang-0.2.0/rlang/man/names2.Rd | 6 rlang-0.2.0/rlang/man/new-vector-along.Rd |only rlang-0.2.0/rlang/man/new-vector.Rd |only rlang-0.2.0/rlang/man/new_call.Rd |only rlang-0.2.0/rlang/man/new_function.Rd | 2 rlang-0.2.0/rlang/man/new_node.Rd |only rlang-0.2.0/rlang/man/ns_env.Rd | 8 rlang-0.2.0/rlang/man/op-definition.Rd | 51 - rlang-0.2.0/rlang/man/overscope_eval_next.Rd |only rlang-0.2.0/rlang/man/parse_expr.Rd | 55 - rlang-0.2.0/rlang/man/parse_quosure.Rd |only rlang-0.2.0/rlang/man/prepend.Rd | 10 rlang-0.2.0/rlang/man/quasiquotation.Rd | 230 +++-- rlang-0.2.0/rlang/man/quo_expr.Rd | 53 - rlang-0.2.0/rlang/man/quo_label.Rd |only rlang-0.2.0/rlang/man/quo_squash.Rd |only rlang-0.2.0/rlang/man/quosure.Rd | 261 ++---- rlang-0.2.0/rlang/man/quotation.Rd |only rlang-0.2.0/rlang/man/restarting.Rd | 2 rlang-0.2.0/rlang/man/return_from.Rd | 8 rlang-0.2.0/rlang/man/rst_list.Rd | 2 rlang-0.2.0/rlang/man/scoped_bindings.Rd |only rlang-0.2.0/rlang/man/scoped_env.Rd | 8 rlang-0.2.0/rlang/man/scoped_options.Rd |only rlang-0.2.0/rlang/man/seq2.Rd | 2 rlang-0.2.0/rlang/man/set_attrs.Rd | 17 rlang-0.2.0/rlang/man/set_chr_encoding.Rd | 10 rlang-0.2.0/rlang/man/set_expr.Rd | 6 rlang-0.2.0/rlang/man/set_names.Rd | 10 rlang-0.2.0/rlang/man/splice.Rd | 102 +- rlang-0.2.0/rlang/man/stack.Rd | 16 rlang-0.2.0/rlang/man/stack_trim.Rd | 10 rlang-0.2.0/rlang/man/string.Rd | 2 rlang-0.2.0/rlang/man/switch_lang.Rd | 16 rlang-0.2.0/rlang/man/switch_type.Rd | 10 rlang-0.2.0/rlang/man/sym.Rd | 10 rlang-0.2.0/rlang/man/tidy-dots.Rd |only rlang-0.2.0/rlang/man/tidyeval-data.Rd | 25 rlang-0.2.0/rlang/man/type-predicates.Rd | 7 rlang-0.2.0/rlang/man/type_of.Rd | 7 rlang-0.2.0/rlang/man/vec_poke_n.Rd |only rlang-0.2.0/rlang/man/vector-coercion.Rd | 4 rlang-0.2.0/rlang/man/vector-construction.Rd | 60 - rlang-0.2.0/rlang/man/vector-old-ctors.Rd |only rlang-0.2.0/rlang/man/with_env.Rd | 10 rlang-0.2.0/rlang/man/with_handlers.Rd | 2 rlang-0.2.0/rlang/man/with_restarts.Rd | 2 rlang-0.2.0/rlang/src/Makevars |only rlang-0.2.0/rlang/src/capture.c | 132 +-- rlang-0.2.0/rlang/src/export |only rlang-0.2.0/rlang/src/export.c | 44 - rlang-0.2.0/rlang/src/internal |only rlang-0.2.0/rlang/src/internal.c |only rlang-0.2.0/rlang/src/lib |only rlang-0.2.0/rlang/src/lib.c |only rlang-0.2.0/rlang/tests/testthat/fixtures |only rlang-0.2.0/rlang/tests/testthat/helper-capture.R | 26 rlang-0.2.0/rlang/tests/testthat/helper-conditions.R |only rlang-0.2.0/rlang/tests/testthat/helper-locale.R | 6 rlang-0.2.0/rlang/tests/testthat/helper-print.R |only rlang-0.2.0/rlang/tests/testthat/test-arg.R | 6 rlang-0.2.0/rlang/tests/testthat/test-attr.R | 7 rlang-0.2.0/rlang/tests/testthat/test-c-api.R |only rlang-0.2.0/rlang/tests/testthat/test-call.R |only rlang-0.2.0/rlang/tests/testthat/test-conditions.R | 89 +- rlang-0.2.0/rlang/tests/testthat/test-deparse.R |only rlang-0.2.0/rlang/tests/testthat/test-dictionary.R | 16 rlang-0.2.0/rlang/tests/testthat/test-dots.R | 87 +- rlang-0.2.0/rlang/tests/testthat/test-encoding.R | 5 rlang-0.2.0/rlang/tests/testthat/test-env.R | 160 +++ rlang-0.2.0/rlang/tests/testthat/test-eval-tidy.R |only rlang-0.2.0/rlang/tests/testthat/test-events.R |only rlang-0.2.0/rlang/tests/testthat/test-expr.R |only rlang-0.2.0/rlang/tests/testthat/test-fn.R | 108 ++ rlang-0.2.0/rlang/tests/testthat/test-formula.R | 42 rlang-0.2.0/rlang/tests/testthat/test-node.R |only rlang-0.2.0/rlang/tests/testthat/test-operators.R | 10 rlang-0.2.0/rlang/tests/testthat/test-parse.R | 20 rlang-0.2.0/rlang/tests/testthat/test-quasiquotation.R |only rlang-0.2.0/rlang/tests/testthat/test-quo.R |only rlang-0.2.0/rlang/tests/testthat/test-quotation.R |only rlang-0.2.0/rlang/tests/testthat/test-retired.R |only rlang-0.2.0/rlang/tests/testthat/test-s3.R |only rlang-0.2.0/rlang/tests/testthat/test-sexp.R |only rlang-0.2.0/rlang/tests/testthat/test-stack.R | 2 rlang-0.2.0/rlang/tests/testthat/test-state.R |only rlang-0.2.0/rlang/tests/testthat/test-sym.R |only rlang-0.2.0/rlang/tests/testthat/test-types.R | 66 + rlang-0.2.0/rlang/tests/testthat/test-utils.R | 10 rlang-0.2.0/rlang/tests/testthat/test-vec-coerce.R |only rlang-0.2.0/rlang/tests/testthat/test-vec-new.R |only rlang-0.2.0/rlang/tests/testthat/test-vec-squash.R |only rlang-0.2.0/rlang/tests/testthat/test-vec-utils.R |only rlang-0.2.0/rlang/tests/testthat/test-vec.R |only 273 files changed, 4833 insertions(+), 3011 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Andre Simon [ctb] (the CSS files under inst/themes/ were derived from
the Highlight package http://www.andre-simon.de),
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Ben Baumer [ctb],
Brian Diggs [ctb],
Cassio Pereira [ctb],
Christophe Dervieux [ctb],
David Hugh-Jones [ctb],
David Robinson [ctb],
Donald Arseneau [ctb, cph] (the framed package at inst/misc/framed.sty),
Doug Hemken [ctb],
Duncan Murdoch [ctb],
Elio Campitelli [ctb],
Fabian Hirschmann [ctb],
Fitch Simeon [ctb],
Forest Fang [ctb],
Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty),
Garrick Aden-Buie [ctb],
Gregoire Detrez [ctb],
Hadley Wickham [ctb],
Heewon Jeon [ctb],
Henrik Bengtsson [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
Hodges Daniel [ctb],
Jake Burkhead [ctb],
James Manton [ctb],
Jared Lander [ctb],
Jason Punyon [ctb],
Javier Luraschi [ctb],
Jeff Arnold [ctb],
Jenny Bryan [ctb],
Jeremy Ashkenas [ctb, cph] (the CSS file at
inst/misc/docco-classic.css),
Jeremy Stephens [ctb],
Jim Hester [ctb],
Joe Cheng [ctb],
Johannes Ranke [ctb],
John Honaker [ctb],
John Muschelli [ctb],
Jonathan Keane [ctb],
JJ Allaire [ctb],
Johan Toloe [ctb],
Jonathan Sidi [ctb],
Joseph Larmarange [ctb],
Julien Barnier [ctb],
Kaiyin Zhong [ctb],
Kamil Slowikowski [ctb],
Karl Forner [ctb],
Kevin K. Smith [ctb],
Kirill Mueller [ctb],
Kohske Takahashi [ctb],
Martin Modrák [ctb],
Michael Chirico [ctb],
Michael Friendly [ctb],
Michal Bojanowski [ctb],
Michel Kuhlmann [ctb],
Nacho Caballero [ctb],
Nick Salkowski [ctb],
Noam Ross [ctb],
Obada Mahdi [ctb],
Qiang Li [ctb],
Ramnath Vaidyanathan [ctb],
Richard Cotton [ctb],
Robert Krzyzanowski [ctb],
Romain Francois [ctb],
Ruaridh Williamson [ctb],
Scott Kostyshak [ctb],
Sebastian Meyer [ctb],
Sietse Brouwer [ctb],
Simon de Bernard [ctb],
Sylvain Rousseau [ctb],
Taiyun Wei [ctb],
Thibaut Assus [ctb],
Thibaut Lamadon [ctb],
Thomas Leeper [ctb],
Tom Torsney-Weir [ctb],
Trevor Davis [ctb],
Viktoras Veitas [ctb],
Weicheng Zhu [ctb],
Wush Wu [ctb],
Zachary Foster [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.19 dated 2018-01-29 and 1.20 dated 2018-02-20
DESCRIPTION | 15 ++++++--- MD5 | 24 +++++++------- R/parser.R | 36 +++++++++++++++------- R/pattern.R | 1 R/table.R | 9 ++++- R/utils-vignettes.R | 2 - R/utils.R | 69 +++++++++++++++---------------------------- inst/doc/knit_expand.html | 4 +- inst/doc/knit_print.html | 4 +- inst/doc/knitr-intro.html | 10 +++--- inst/doc/knitr-markdown.html | 2 - inst/doc/knitr-refcard.pdf |binary man/read_chunk.Rd | 13 +++++--- 13 files changed, 101 insertions(+), 88 deletions(-)
Title: Estimation of Transition Probabilities for the Illness-Death
Model
Description: Estimation of transition probabilities for the illness-death model. Both the Aalen-Johansen estimator for a Markov model and a novel non-Markovian estimator by de Una-Alvarez and Meira-Machado (2015) <doi:10.1111/biom.12288>, see also Balboa and de Una-Alvarez (2018) <doi:10.18637/jss.v083.i10>, are included.
Author: Vanesa Balboa-Barreiro, Jacobo de Una-Alvarez <jacobo@uvigo.es>
and Luis Meira-Machado <lmachado@math.uminho.pt>
Maintainer: Vanesa Balboa-Barreiro <vanesa.balboa@uvigo.es>
Diff between TP.idm versions 1.2 dated 2016-12-01 and 1.3 dated 2018-02-20
DESCRIPTION | 10 - MD5 | 37 +++-- NAMESPACE | 2 R/TP.idm-internal.R |only R/TPidm.R | 204 +++++++++++++++---------------- R/ci.AJ.R | 192 ++++++++++++++--------------- R/fun.AJ.R | 176 +++++++++++++------------- R/plot.TPidm.R | 182 +++++++++++++-------------- R/prep.data.AJ.R | 320 ++++++++++++++++++++++++------------------------- R/prep.data.event.AJ.R | 46 +++---- R/print.TPidm.R | 108 ++++++++-------- R/test.nm.R | 76 +++++------ R/var.AJ.R | 146 +++++++++++----------- R/var.NM.R | 12 - build/partial.rdb |binary data/colonTP.rda |binary inst |only man/TP.idm-package.Rd | 2 man/TPidm.Rd | 4 man/colonTP.Rd | 4 src/init.c |only 21 files changed, 764 insertions(+), 757 deletions(-)
Title: Downloading Time Series from ALFRED Database for Various
Vintages
Description: Provides direct access to the ALFRED (<https://alfred.stlouisfed.org>) and FRED (<https://fred.stlouisfed.org>) databases.
Its functions return tidy data frames for different releases of the specified time series.
Note that this product uses the FRED© API but is not endorsed or certified by the Federal Reserve Bank of St. Louis.
Author: Onno Kleen [aut, cre]
Maintainer: Onno Kleen <r@onnokleen.de>
Diff between alfred versions 0.1.4 dated 2017-10-08 and 0.1.5 dated 2018-02-20
DESCRIPTION | 6 MD5 | 18 NEWS.md | 1 R/get_alfred_series.R | 1 build/vignette.rds |binary inst/doc/alfred.R | 4 inst/doc/alfred.Rmd | 4 inst/doc/alfred.html | 1607 ++++++++--------------------------------------- man/get_alfred_series.Rd | 1 vignettes/alfred.Rmd | 4 10 files changed, 313 insertions(+), 1333 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-21 2.0.2
2017-11-14 2.0.1
2017-11-06 2.0.0
2017-07-11 1.1.4
2017-05-30 1.1.3
2017-04-20 1.1.2
2017-04-03 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-14 0.13
2017-12-07 0.12
2017-07-13 0.11
2017-05-24 0.10.2
2017-04-20 0.10.1
2017-04-06 0.10.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-11-19 1.0.3
2014-11-04 1.0.2
2014-10-05 1.0.1
2014-09-24 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-15 0.12.0
2017-12-05 0.11.2
2017-07-17 0.11
2017-06-20 0.10
2017-06-01 0.9
2017-04-20 0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-02 1.0-7
2013-12-12 1.0-6
2012-03-19 1.0-5
2011-05-13 1.0-4
2009-09-29 1.0-3
2008-08-20 1.0-2
Title: Data-Driven Diagnostic Plots
Description: Designs plots in terms of core structure. See 'example(metaplot)'.
Primary arguments are (unquoted) column names; order and type (numeric or not)
dictate the resulting plot. Specify any y variables, x variable, any groups variable,
and any conditioning variables to metaplot() to generate density plots, boxplots,
mosaic plots, scatterplots, scatterplot matrices, or conditioned plots. Use multiplot()
to arrange plots in grids. Wherever present, scalar column attributes 'label' and 'guide'
are honored, producing fully annotated plots with minimal effort. Attribute 'guide'
is typically units, but may be encoded() to provide interpretations of categorical
values (see '?encode'). Utility unpack() transforms scalar column attributes to row
values and pack() does the reverse, supporting tool-neutral storage of metadata along
with primary data. The package supports customizable aesthetics such as such as reference
lines, unity lines, smooths, log transformation, and linear fits. Compact syntax and
integrated metadata promote workflow scalability.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between metaplot versions 0.4.1 dated 2018-02-03 and 0.4.4 dated 2018-02-20
DESCRIPTION | 14 MD5 | 60 ++- NAMESPACE | 8 R/box.R | 4 R/categorical.R | 593 ++++++++++++++++++++++++++++++++++++-- R/metaplot.R | 107 +++--- R/pack.R | 11 R/scatter.R | 24 - inst/extdata/theoph.csv | 274 ++++++++--------- man/boxplot_data_frame.Rd | 7 man/boxplot_panel.Rd | 5 man/categorical.Rd | 4 man/categorical.data.frame.Rd | 11 man/categorical_data_frame.Rd |only man/categorical_panel.Rd |only man/corsplom_data_frame.Rd | 1 man/corsplom_panel_correlation.Rd | 3 man/corsplom_panel_diagonal.Rd | 3 man/corsplom_panel_scatter.Rd | 3 man/dens_panel.Rd | 2 man/densplot_data_frame.Rd | 1 man/diag_label.Rd | 2 man/diag_pin.Rd | 2 man/iso_prepanel.Rd | 2 man/metaplot.Rd | 43 +- man/metaplot.data.frame.Rd | 65 ++-- man/metaplot_ref.Rd | 2 man/pack.data.frame.Rd | 2 man/panel_tile.Rd |only man/scatter_data_frame.Rd | 7 man/scatter_panel.Rd | 3 man/scatter_panel_ref.Rd | 4 man/tilestats.Rd |only 33 files changed, 948 insertions(+), 319 deletions(-)
Title: Replicate and Analyse 'InterVA4'
Description: Provides an R version of the 'InterVA4' software (<http://www.interva.net>) for coding cause of death from verbal autopsies. It also provides simple graphical representation of individual and population level statistics.
Author: Zehang Li, Tyler McCormick, Sam Clark, Peter Byass
Maintainer: Zehang Li <lizehang@uw.edu>
Diff between InterVA4 versions 1.7.4 dated 2017-05-26 and 1.7.5 dated 2018-02-20
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/InterVA.plot.R | 6 +++++- inst/NEWS.Rd | 5 +++++ 4 files changed, 17 insertions(+), 8 deletions(-)
Title: Disciplined Convex Optimization
Description: An object-oriented modeling language for disciplined convex
programming (DCP). It allows the user to formulate convex optimization problems
in a natural way following mathematical convention and DCP rules. The system
analyzes the problem, verifies its convexity, converts it into a canonical form,
and hands it off to an appropriate solver to obtain the solution.
Author: Anqi Fu [aut, cre],
Balasubramanian Narasimhan [aut],
Steven Diamond [aut],
John Miller [aut],
Stephen Boyd [ctb],
Paul Kunsberg Rosenfield [ctb]
Maintainer: Anqi Fu <anqif@stanford.edu>
Diff between CVXR versions 0.94-4 dated 2017-11-20 and 0.95 dated 2018-02-20
DESCRIPTION | 8 MD5 | 22 - NAMESPACE | 1 R/generics.R | 59 +++ R/problem.R | 37 + R/solver.R | 7 README.md | 4 build/vignette.rds |binary inst/doc/cvxr_intro.html | 659 ++++++++++++++++++++++------------- man/Problem-class.Rd | 9 man/unpack_results.Rd |only tests/manual/test_vignette.R | 50 ++ tests/testthat/test_unpack_results.R |only 13 files changed, 588 insertions(+), 268 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-12 1.1.0
2016-11-21 1.0.2
2016-09-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-29 1.2
2015-09-08 1.1
2015-08-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-30 3.1
2017-12-06 3.0
2017-11-16 2.3
2017-11-14 2.2
2017-05-09 2.1
2016-10-12 2.0
2010-01-26 1.2
2009-12-22 1.1
2009-12-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-29 2.3-1
2013-09-25 2.3
2013-06-19 2.2
2013-06-03 2.1
2013-05-23 2.0
2013-01-25 1.11
2012-11-30 1.10
2012-04-12 1.08
2012-02-22 1.07
2012-01-04 1.05
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-08 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-13 1.0.3
2016-02-17 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-28 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-12 2.2
2015-02-26 2.1
2013-09-19 2.0.1
2012-11-07 1.5
2012-09-14 1.4
2012-03-26 1.2
2011-04-26 1.0
2010-06-11 0.8-4
2010-06-04 0.8-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-07 0.3.0
2015-09-19 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-12 2.0.1
2017-07-11 2.0.0