Title: Implementation of the SVM-Maj Algorithm
Description: Implements the SVM-Maj algorithm to train data with support vector machine
as described in Groenen et al. (2008) <doi:10.1007/s11634-008-0020-9>.
This algorithm uses two efficient updates, one for linear kernel and one
for the nonlinear kernel.
Author: Hoksan Yip, Patrick J.F. Groenen, Georgi Nalbantov
Maintainer: Hok San Yip <hoksan@gmail.com>
Diff between SVMMaj versions 0.2-2 dated 2011-01-13 and 0.2-8 dated 2018-02-25
SVMMaj-0.2-2/SVMMaj/R/roccurve.r |only SVMMaj-0.2-2/SVMMaj/R/svmmaj2.r |only SVMMaj-0.2-2/SVMMaj/R/svmmajdefault.R |only SVMMaj-0.2-2/SVMMaj/R/svmmajtuning.R |only SVMMaj-0.2-2/SVMMaj/data/libsvm.Rdata |only SVMMaj-0.2-2/SVMMaj/data/voting.R |only SVMMaj-0.2-2/SVMMaj/man/australian.Rd |only SVMMaj-0.2-2/SVMMaj/man/diabetes.rd |only SVMMaj-0.2-2/SVMMaj/man/hinge.Rd |only SVMMaj-0.2-2/SVMMaj/man/ispline.Rd |only SVMMaj-0.2-2/SVMMaj/man/predict.svmmaj.rd |only SVMMaj-0.2-8/SVMMaj/DESCRIPTION | 27 SVMMaj-0.2-8/SVMMaj/MD5 |only SVMMaj-0.2-8/SVMMaj/NAMESPACE | 64 +- SVMMaj-0.2-8/SVMMaj/R/classification.R |only SVMMaj-0.2-8/SVMMaj/R/data.R |only SVMMaj-0.2-8/SVMMaj/R/hinge.R | 288 +++++---- SVMMaj-0.2-8/SVMMaj/R/ispline.R | 180 ++++-- SVMMaj-0.2-8/SVMMaj/R/normalize.R | 241 +++++--- SVMMaj-0.2-8/SVMMaj/R/plotsvmmaj.R |only SVMMaj-0.2-8/SVMMaj/R/predict.R |only SVMMaj-0.2-8/SVMMaj/R/printsvmmaj.R |only SVMMaj-0.2-8/SVMMaj/R/roccurve.R |only SVMMaj-0.2-8/SVMMaj/R/svmmaj.R | 714 ++++++++++++++---------- SVMMaj-0.2-8/SVMMaj/R/svmmajcrossval.R | 645 +++++++++++++++++---- SVMMaj-0.2-8/SVMMaj/R/update.R | 224 +++++-- SVMMaj-0.2-8/SVMMaj/README.md |only SVMMaj-0.2-8/SVMMaj/build |only SVMMaj-0.2-8/SVMMaj/data/supermarket1996.RData |only SVMMaj-0.2-8/SVMMaj/data/voting.r |only SVMMaj-0.2-8/SVMMaj/inst |only SVMMaj-0.2-8/SVMMaj/man/AusCredit.Rd |only SVMMaj-0.2-8/SVMMaj/man/X.svmmaj.Rd |only SVMMaj-0.2-8/SVMMaj/man/auc.Rd |only SVMMaj-0.2-8/SVMMaj/man/classification.Rd |only SVMMaj-0.2-8/SVMMaj/man/diabetes.Rd |only SVMMaj-0.2-8/SVMMaj/man/getHinge.Rd |only SVMMaj-0.2-8/SVMMaj/man/isb.Rd |only SVMMaj-0.2-8/SVMMaj/man/isplinebasis.Rd |only SVMMaj-0.2-8/SVMMaj/man/normalize.Rd | 83 +- SVMMaj-0.2-8/SVMMaj/man/plot.hinge.Rd |only SVMMaj-0.2-8/SVMMaj/man/plot.svmmajcrossval.Rd |only SVMMaj-0.2-8/SVMMaj/man/plotWeights.Rd |only SVMMaj-0.2-8/SVMMaj/man/predict.svmmaj.Rd |only SVMMaj-0.2-8/SVMMaj/man/predict.transDat.Rd |only SVMMaj-0.2-8/SVMMaj/man/print.svmmaj.Rd |only SVMMaj-0.2-8/SVMMaj/man/print.svmmajcrossval.Rd |only SVMMaj-0.2-8/SVMMaj/man/roccurve.Rd |only SVMMaj-0.2-8/SVMMaj/man/supermarket1996.Rd |only SVMMaj-0.2-8/SVMMaj/man/svmmaj.Rd | 326 +++++----- SVMMaj-0.2-8/SVMMaj/man/svmmajcrossval.Rd | 156 +++-- SVMMaj-0.2-8/SVMMaj/man/transformdata.Rd |only SVMMaj-0.2-8/SVMMaj/man/voting.Rd | 134 ++-- SVMMaj-0.2-8/SVMMaj/tests |only SVMMaj-0.2-8/SVMMaj/vignettes |only 55 files changed, 1971 insertions(+), 1111 deletions(-)
Title: Analysis of Aerobiological Data
Description: Supports analysis of aerobiological data.
Available features include determination of pollen season limits,
replacement of outliers (Kasprzyk and Walanus (2014) <doi:10.1007/s10453-014-9332-8>),
and calculation of growing degree days.
Author: Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between pollen versions 0.53.00 dated 2017-07-21 and 0.70.0 dated 2018-02-25
DESCRIPTION | 21 ++-- MD5 | 38 +++---- R/gdd.R | 52 ++++------ R/outliers_replacer.R | 62 ++++++------ R/pollen.R | 2 R/pollen_count.R | 6 - R/pollen_season.R | 217 ++++++++++++++++++++---------------------- README.md | 15 +- build/vignette.rds |binary inst/doc/intro.R | 34 +++--- inst/doc/intro.Rmd | 34 +++--- inst/doc/intro.html | 40 ++++--- man/gdd.Rd | 6 - man/outliers_replacer.Rd | 22 +--- man/pollen_season.Rd | 24 ++-- tests/testthat.R | 4 tests/testthat/test-gdd.R | 11 -- tests/testthat/test-seasons.R | 22 ++-- tests/testthat/test-zeros.R | 18 +-- vignettes/intro.Rmd | 34 +++--- 20 files changed, 331 insertions(+), 331 deletions(-)
Title: Coloured Formatting for Columns
Description: Provides a 'pillar' generic designed for formatting columns
of data using the full range of colours provided by modern terminals.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between pillar versions 1.1.0 dated 2018-01-14 and 1.2.0 dated 2018-02-25
DESCRIPTION | 13 MD5 | 284 +++++++++---------- NAMESPACE | 1 NEWS.md | 29 + R/pillar-package.R | 6 R/scientific.R | 29 - R/shaft.R | 19 + R/sigfig.R | 84 ++++- R/styles.R | 16 + R/utils.R | 11 README.md | 15 - man/figures/colours.png |binary man/pillar-package.Rd | 6 man/style_subtle.Rd | 7 tests/testthat/out-native/asis-list.txt | 8 tests/testthat/out-native/asis-number.txt | 8 tests/testthat/out-native/basic-signif-5.txt | 24 - tests/testthat/out-native/basic-signif-7.txt |only tests/testthat/out-native/basic.txt | 24 - tests/testthat/out-native/date.txt | 6 tests/testthat/out-native/deal1.txt | 8 tests/testthat/out-native/deal2.txt | 8 tests/testthat/out-native/deal3.txt | 8 tests/testthat/out-native/decimal-insignif.txt | 22 - tests/testthat/out-native/escaped.txt | 4 tests/testthat/out-native/factor.txt | 14 tests/testthat/out-native/integer-06.txt | 10 tests/testthat/out-native/integer-07.txt | 10 tests/testthat/out-native/integer-08.txt | 10 tests/testthat/out-native/integer-09.txt | 10 tests/testthat/out-native/letters-long-03.txt | 6 tests/testthat/out-native/letters-long-10.txt | 6 tests/testthat/out-native/letters-long.txt | 6 tests/testthat/out-native/letters.txt | 14 tests/testthat/out-native/list-each.txt | 8 tests/testthat/out-native/list-na.txt | 6 tests/testthat/out-native/list-narrow.txt | 4 tests/testthat/out-native/list-null.txt | 6 tests/testthat/out-native/logical.txt | 8 tests/testthat/out-native/multi-18.txt | 10 tests/testthat/out-native/multi-19.txt | 10 tests/testthat/out-native/multi-20.txt | 10 tests/testthat/out-native/multi-21.txt | 10 tests/testthat/out-native/multi-22.txt | 10 tests/testthat/out-native/multi-23.txt | 10 tests/testthat/out-native/multi-24.txt | 10 tests/testthat/out-native/multi-25.txt | 10 tests/testthat/out-native/multi-26.txt | 10 tests/testthat/out-native/multi-27.txt | 10 tests/testthat/out-native/multi-28.txt | 10 tests/testthat/out-native/multi-29.txt | 10 tests/testthat/out-native/multi-30.txt | 10 tests/testthat/out-native/multi-31.txt | 10 tests/testthat/out-native/multi-32.txt | 10 tests/testthat/out-native/multi-33.txt | 10 tests/testthat/out-native/multi-34.txt | 10 tests/testthat/out-native/multi-35.txt | 10 tests/testthat/out-native/multi-36.txt | 10 tests/testthat/out-native/multi-37.txt | 10 tests/testthat/out-native/multi-38.txt | 10 tests/testthat/out-native/multi-39.txt | 10 tests/testthat/out-native/multi-inf.txt | 10 tests/testthat/out-native/na-names.txt | 10 tests/testthat/out-native/numeric-04.txt | 10 tests/testthat/out-native/numeric-07.txt | 10 tests/testthat/out-native/numeric-10.txt | 10 tests/testthat/out-native/numeric-15.txt | 10 tests/testthat/out-native/numeric-22.txt | 10 tests/testthat/out-native/ordered.txt | 14 tests/testthat/out-native/rowid-3.txt | 8 tests/testthat/out-native/rowid-star-title-12.txt | 28 - tests/testthat/out-native/scientific-short-neg.txt | 16 - tests/testthat/out-native/scientific-tiny.txt |only tests/testthat/out-native/scientific.txt | 16 - tests/testthat/out-native/spaces.txt | 14 tests/testthat/out-native/style-bold-false.txt | 20 - tests/testthat/out-native/style-neg-false.txt | 20 - tests/testthat/out-native/style-regular.txt | 20 - tests/testthat/out-native/style-subtle-false.txt | 20 - tests/testthat/out-native/style-subtle-neg-false.txt | 20 - tests/testthat/out-native/style-subtle-num-true.txt |only tests/testthat/out-native/tibble-all--30.txt | 10 tests/testthat/out-native/tibble-all--300-20.txt | 30 +- tests/testthat/out-native/tibble-all--300-30.txt | 40 +- tests/testthat/out-native/tibble-all--300-40.txt | 30 +- tests/testthat/out-native/tibble-all--300-50.txt | 20 - tests/testthat/out-native/tibble-all--300-60.txt | 20 - tests/testthat/out-native/tibble-all--300-70.txt | 20 - tests/testthat/out-native/tibble-all--300.txt | 20 - tests/testthat/out-native/tibble-iris-3-20.txt | 10 tests/testthat/out-native/tibble-iris-5-30.txt | 14 tests/testthat/out-native/tibble-mtcars-8-30.txt | 20 - tests/testthat/out-native/tibble-newline.txt | 8 tests/testthat/out-native/tibble-non-syntactic.txt | 6 tests/testthat/out-native/tibble-space.txt | 12 tests/testthat/out-native/time-posix.txt | 6 tests/testthat/out-native/time.txt | 6 tests/testthat/out-native/title-crayon.txt | 22 - tests/testthat/out-native/title-fifteen.txt | 22 - tests/testthat/out-native/title-longer.txt | 22 - tests/testthat/out-native/title-none.txt | 20 - tests/testthat/out-native/title-short.txt | 22 - tests/testthat/out-native/title-too-long.txt | 22 - tests/testthat/out/basic-signif-5.txt | 24 - tests/testthat/out/basic-signif-7.txt |only tests/testthat/out/basic.txt | 16 - tests/testthat/out/decimal-insignif.txt | 12 tests/testthat/out/integer-06.txt | 6 tests/testthat/out/integer-07.txt | 6 tests/testthat/out/integer-08.txt | 6 tests/testthat/out/integer-09.txt | 6 tests/testthat/out/logical.txt | 4 tests/testthat/out/numeric-04.txt | 8 tests/testthat/out/numeric-07.txt | 8 tests/testthat/out/numeric-10.txt | 8 tests/testthat/out/numeric-15.txt | 8 tests/testthat/out/numeric-22.txt | 8 tests/testthat/out/scientific-short-neg.txt | 8 tests/testthat/out/scientific-tiny.txt |only tests/testthat/out/scientific.txt | 8 tests/testthat/out/style-bold-false.txt | 14 tests/testthat/out/style-neg-false.txt | 14 tests/testthat/out/style-regular.txt | 14 tests/testthat/out/style-subtle-false.txt | 14 tests/testthat/out/style-subtle-neg-false.txt | 14 tests/testthat/out/style-subtle-num-true.txt |only tests/testthat/out/tibble-all--30.txt | 4 tests/testthat/out/tibble-all--300-20.txt | 4 tests/testthat/out/tibble-all--300-30.txt | 4 tests/testthat/out/tibble-all--300-40.txt | 4 tests/testthat/out/tibble-all--300-50.txt | 4 tests/testthat/out/tibble-all--300-60.txt | 4 tests/testthat/out/tibble-all--300-70.txt | 4 tests/testthat/out/tibble-all--300.txt | 4 tests/testthat/out/tibble-mtcars-8-30.txt | 16 - tests/testthat/out/tibble-non-syntactic.txt | 2 tests/testthat/out/title-crayon.txt | 22 - tests/testthat/out/title-fifteen.txt | 18 - tests/testthat/out/title-longer.txt | 18 - tests/testthat/out/title-none.txt | 20 - tests/testthat/out/title-short.txt | 22 - tests/testthat/out/title-too-long.txt | 18 - tests/testthat/test-format_decimal.R | 8 tests/testthat/test-format_multi.R | 7 tests/testthat/test-format_numeric.R | 2 tests/testthat/test-format_scientific.R | 5 146 files changed, 1070 insertions(+), 972 deletions(-)
Title: Multicollinearity Diagnostic Measures
Description: Package computes popular and widely used multicollinearity diagnostic measures. Package also indicates which regressors may be the reason of collinearity among regressors.
Author: Dr. Muhammad Imdad Ullah and Dr. Muhammad Aslam
Maintainer: Dr. Muhammad Imdad Ullah <mimdadasad@gmail.com>
Diff between mctest versions 1.1.1 dated 2017-10-28 and 1.2 dated 2018-02-25
DESCRIPTION | 11 +++--- MD5 | 21 +++++++----- NAMESPACE | 3 + R/eigp.R |only R/imcdiag.R | 8 ++-- R/mc.plot.R | 96 ++++++++++++++++++++++++++++++++++++++++++++------------- R/omcdiag.R | 51 +++++++++++++----------------- inst/CITATION |only inst/NEWS.Rd | 11 +++++- man/eigp.Rd |only man/imcdiag.Rd | 14 ++++---- man/mc.plot.Rd | 14 +++----- man/omcdiag.Rd | 24 +++++++------- 13 files changed, 157 insertions(+), 96 deletions(-)
Title: Kernel Based Gradient Matching for Parameter Inference in
Ordinary Differential Equations
Description: The kernel ridge regression and the gradient matching algorithm proposed in Niu et al. (2016) <http://jmlr.org/proceedings/papers/v48/niu16.html> and the warping algorithm proposed in Niu et al. (2017) <DOI:10.1007/s00180-017-0753-z> are implemented for parameter inference in differential equations. Four schemes are provided for improving parameter estimation in odes by using the odes regularisation and warping.
Author: Mu Niu [aut, cre]
Maintainer: Mu Niu <mu.niu@plymouth.ac.uk>
Diff between KGode versions 1.0.0 dated 2017-10-23 and 1.0.1 dated 2018-02-25
DESCRIPTION | 8 ++++---- MD5 | 6 ++++-- NAMESPACE | 2 ++ R/bootstrap.r |only man/bootstrap.Rd |only 5 files changed, 10 insertions(+), 6 deletions(-)
Title: Run Predictions Inside the Database
Description: It parses a fitted 'R' model object, and returns a formula
in 'Tidy Eval' code that calculates the predictions.
It works with several databases back-ends because it leverages 'dplyr'
and 'dbplyr' for the final 'SQL' translation of the algorithm. It currently
supports lm(), glm(), randomForest() and ranger() models.
Author: Edgar Ruiz [aut, cre]
Maintainer: Edgar Ruiz <edgar@rstudio.com>
Diff between tidypredict versions 0.1.0 dated 2018-01-17 and 0.2.0 dated 2018-02-25
DESCRIPTION | 13 +-- MD5 | 71 +++++++++-------- NAMESPACE | 4 NEWS.md |only R/acceptable.R | 17 ++-- R/parsemodel.R | 176 ++++++++++++++++++++++++++++++------------- R/predict-column.R | 5 - R/predict-fit.R | 19 +++- R/predict-interval.R | 8 - R/te-formulas.R | 8 - R/te-interval.R | 8 - R/te-randomforest.R | 5 - R/te-ranger.R |only R/test-predictions.R | 80 ++++++++++++++++--- R/tidypredict.R | 5 - README.md | 45 +++++++--- build/vignette.rds |binary inst/doc/glm.Rmd | 2 inst/doc/glm.html | 4 inst/doc/lm.Rmd | 2 inst/doc/lm.html | 4 inst/doc/randomForest.Rmd | 2 inst/doc/randomForest.html | 4 inst/doc/ranger.R |only inst/doc/ranger.Rmd |only inst/doc/ranger.html |only inst/doc/sql.R | 2 inst/doc/sql.Rmd | 2 inst/doc/sql.html | 1 man/parse_model.Rd | 2 man/tidypredict-package.Rd | 2 tests/testthat/test-ranger.R |only tests/testthat/test-rf.R | 8 - tests/testthat/test_glm.R | 10 +- tests/testthat/test_lm.R | 16 +-- vignettes/glm.Rmd | 2 vignettes/lm.Rmd | 2 vignettes/randomForest.Rmd | 2 vignettes/ranger.Rmd |only vignettes/sql.Rmd | 2 40 files changed, 353 insertions(+), 180 deletions(-)
Title: Energy-Based Dependence Measures
Description: Implementations of (1) mutual dependence measures and mutual independence tests in
Jin, Z., and Matteson, D. S. (2017) <arXiv:1709.02532>;
(2) independent component analysis methods based on mutual dependence measures in
Jin, Z., and Matteson, D. S. (2017) <arXiv:1709.02532>
and Pfister, N., et al. (2018) <doi:10.1111/rssb.12235>;
(3) conditional mean dependence measures and conditional mean independence tests in
Shao, X., and Zhang, J. (2014) <doi:10.1080/01621459.2014.887012>,
Park, T., et al. (2015) <doi:10.1214/15-EJS1047>,
and Lee, C. E., and Shao, X. (2017) <doi:10.1080/01621459.2016.1240083>.
Author: Ze Jin [aut, cre],
Shun Yao [aut],
David S. Matteson [aut],
Xiaofeng Shao [aut]
Maintainer: Ze Jin <zj58@cornell.edu>
Diff between EDMeasure versions 1.1.0 dated 2018-02-13 and 1.2.0 dated 2018-02-25
DESCRIPTION | 17 +++++---- MD5 | 57 +++++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 23 ++++++++++--- R/EDMeasure-package.R | 7 ++- R/mdc.R | 2 - R/mdd.R | 10 ++--- R/mddm.R |only R/mdm.R | 1 R/mdm_ica.R | 3 - R/mdm_ica_functions.R | 2 - R/mdm_test.R | 1 R/pmdc.R | 8 ++-- R/pmdd.R | 8 ++-- README.md | 5 ++ inst/CITATION | 8 ++-- man/EDMeasure-package.Rd | 7 ++- man/mdc.Rd | 2 - man/mdd.Rd | 2 - man/mddm.Rd |only man/mdm.Rd | 3 + man/mdm_test.Rd | 3 + man/pmdc.Rd | 8 ++-- man/pmdd.Rd | 8 ++-- src/EDMeasure_init.c | 12 ++---- src/cmdm.c | 79 +++++++++++++++++++++++++++++++++++++-------- src/cmdm_functions.c | 74 +++++++++++++++++++++++++++++++++++++++++- src/mdm.c | 3 + src/mdm_functions.c | 9 ++--- tests/testthat/test-mdd.R | 2 - tests/testthat/test-mddm.R |only 31 files changed, 262 insertions(+), 103 deletions(-)
Title: Functions for the Analysis of Star Trek Thematic Data
Description: An implementation of 1) the hypergeometric test for over-representation of literary themes in a storyset (a list of stories) relative to a background list of stories, and 2) a recommendation system that takes a user-selected story as input and returns a ranked list of similar stories on the basis of shared themes. The package is currently implemented for the episodes of the Star Trek television franchise series The Original Series (TOS), The Animated Series (TAS), The Next Generation (TNG), and Voyager (VOY).
Author: Paul Sheridan, Mikael Onsjö
Maintainer: Paul Sheridan <paul.sheridan.stats@gmail.com>
Diff between stoRy versions 0.1.1 dated 2017-07-14 and 0.1.2 dated 2018-02-25
stoRy-0.1.1/stoRy/R/TEA.r |only stoRy-0.1.1/stoRy/data/theme_definitions.rda |only stoRy-0.1.1/stoRy/data/themed_stories.rda |only stoRy-0.1.1/stoRy/inst/datasets/theme_definitions.tsv |only stoRy-0.1.1/stoRy/inst/datasets/themed_stories.tsv |only stoRy-0.1.1/stoRy/man/TEA.Rd |only stoRy-0.1.1/stoRy/man/theme_definitions.Rd |only stoRy-0.1.1/stoRy/man/themed_stories.Rd |only stoRy-0.1.2/stoRy/DESCRIPTION | 14 stoRy-0.1.2/stoRy/MD5 | 78 stoRy-0.1.2/stoRy/NAMESPACE | 3 stoRy-0.1.2/stoRy/NEWS.md | 8 stoRy-0.1.2/stoRy/R/checks.r | 17 stoRy-0.1.2/stoRy/R/data_help_files.r | 50 stoRy-0.1.2/stoRy/R/def_story.r | 50 stoRy-0.1.2/stoRy/R/def_theme.r | 14 stoRy-0.1.2/stoRy/R/get_enriched_themes.r |only stoRy-0.1.2/stoRy/R/get_similar_stories.r |only stoRy-0.1.2/stoRy/R/helpers.r |only stoRy-0.1.2/stoRy/R/print_tree.r | 2 stoRy-0.1.2/stoRy/R/sysdata.rda |binary stoRy-0.1.2/stoRy/build/vignette.rds |binary stoRy-0.1.2/stoRy/data/story_ids_by_theme.rda |binary stoRy-0.1.2/stoRy/data/story_keywords.rda |binary stoRy-0.1.2/stoRy/data/story_metadata.rda |binary stoRy-0.1.2/stoRy/data/story_settings.rda |binary stoRy-0.1.2/stoRy/data/story_themes.rda |only stoRy-0.1.2/stoRy/data/theme_dict.rda |only stoRy-0.1.2/stoRy/inst/datasets/story_ids_by_theme.tsv | 3666 ++++--- stoRy-0.1.2/stoRy/inst/datasets/story_keywords.tsv | 6897 +++++++-------- stoRy-0.1.2/stoRy/inst/datasets/story_metadata.tsv | 735 - stoRy-0.1.2/stoRy/inst/datasets/story_settings.tsv | 284 stoRy-0.1.2/stoRy/inst/datasets/story_themes.tsv |only stoRy-0.1.2/stoRy/inst/datasets/theme_dict.tsv |only stoRy-0.1.2/stoRy/inst/doc/vignette.R | 19 stoRy-0.1.2/stoRy/inst/doc/vignette.Rnw | 37 stoRy-0.1.2/stoRy/inst/doc/vignette.pdf |binary stoRy-0.1.2/stoRy/inst/storysets/benchmark_storysets.smt |only stoRy-0.1.2/stoRy/inst/storysets/series.smt | 1 stoRy-0.1.2/stoRy/man/get_enriched_themes.Rd |only stoRy-0.1.2/stoRy/man/get_similar_stories.Rd |only stoRy-0.1.2/stoRy/man/story.Rd | 4 stoRy-0.1.2/stoRy/man/story_ids_by_theme.Rd | 4 stoRy-0.1.2/stoRy/man/story_keywords.Rd | 4 stoRy-0.1.2/stoRy/man/story_metadata.Rd | 4 stoRy-0.1.2/stoRy/man/story_settings.Rd | 4 stoRy-0.1.2/stoRy/man/story_themes.Rd |only stoRy-0.1.2/stoRy/man/theme_dict.Rd |only stoRy-0.1.2/stoRy/vignettes/vignette-concordance.tex | 2 stoRy-0.1.2/stoRy/vignettes/vignette.Rnw | 37 50 files changed, 6634 insertions(+), 5300 deletions(-)
Title: High Performance Algorithms for Vine Copula Modeling
Description: Provides an interface to 'vinecopulib', a C++ library for vine
copula modeling based on 'Boost' and 'Eigen'. The 'rvinecopulib'
package implements the core features of the popular 'VineCopula' package, in
particular inference algorithms for both vine copula and bivariate copula
models. Advantages over 'VineCopula' are a sleeker and more modern API,
improved performances, especially in high dimensions, nonparametric and
multi-parameter families. The 'rvinecopulib' package includes 'vinecopulib' as
header-only C++ library (currently version 0.2.6). Thus
users do not need to install 'vinecopulib' itself in order to use
'rvinecopulib'. Since their initial releases, 'vinecopulib' is licensed under
the MIT License, and 'rvinecopulib' is licensed under the GNU GPL version 3.
Author: Thomas Nagler [aut, cre],
Thibault Vatter [aut]
Maintainer: Thomas Nagler <info@vinecopulib.org>
Diff between rvinecopulib versions 0.2.5.1.0 dated 2018-01-14 and 0.2.6.1.1 dated 2018-02-25
rvinecopulib-0.2.5.1.0/rvinecopulib/tests/testthat/Rplots.pdf |only rvinecopulib-0.2.6.1.1/rvinecopulib/DESCRIPTION | 8 rvinecopulib-0.2.6.1.1/rvinecopulib/MD5 | 68 ++-- rvinecopulib-0.2.6.1.1/rvinecopulib/NAMESPACE | 1 rvinecopulib-0.2.6.1.1/rvinecopulib/NEWS.md | 29 + rvinecopulib-0.2.6.1.1/rvinecopulib/R/RcppExports.R | 12 rvinecopulib-0.2.6.1.1/rvinecopulib/R/bicop.R | 12 rvinecopulib-0.2.6.1.1/rvinecopulib/R/bicop_methods.R | 4 rvinecopulib-0.2.6.1.1/rvinecopulib/R/rvinecopulib.R | 2 rvinecopulib-0.2.6.1.1/rvinecopulib/R/vinecop.R | 17 - rvinecopulib-0.2.6.1.1/rvinecopulib/R/vinecop_methods.R | 28 + rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/version.hpp | 4 rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/bicop/class.hpp | 3 rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/bicop/fit_controls.hpp | 8 rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/bicop/implementation/archimedean.ipp | 3 rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/bicop/implementation/class.ipp | 40 ++ rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/bicop/implementation/fit_controls.ipp | 29 + rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/bicop/implementation/tll.ipp | 4 rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/misc/implementation/tools_eigen.ipp | 13 rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/misc/implementation/tools_stats.ipp | 152 +++++++++- rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/misc/tools_eigen.hpp | 12 rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/misc/tools_stats.hpp | 2 rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/vinecop/class.hpp | 6 rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/vinecop/fit_controls.hpp | 17 - rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/vinecop/implementation/class.ipp | 81 ++++- rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/vinecop/implementation/fit_controls.ipp | 19 - rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/vinecop/implementation/rvine_matrix.ipp | 3 rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/vinecop/implementation/tools_select.ipp | 102 +++--- rvinecopulib-0.2.6.1.1/rvinecopulib/inst/include/vinecopulib/vinecop/tools_select.hpp | 11 rvinecopulib-0.2.6.1.1/rvinecopulib/man/bicop.Rd | 13 rvinecopulib-0.2.6.1.1/rvinecopulib/man/mBICV.Rd |only rvinecopulib-0.2.6.1.1/rvinecopulib/man/rvinecopulib.Rd | 2 rvinecopulib-0.2.6.1.1/rvinecopulib/man/vinecop.Rd | 23 - rvinecopulib-0.2.6.1.1/rvinecopulib/src/RcppExports.cpp | 32 +- rvinecopulib-0.2.6.1.1/rvinecopulib/src/bicop_wrappers.cpp | 4 rvinecopulib-0.2.6.1.1/rvinecopulib/src/vinecop_wrappers.cpp | 10 36 files changed, 590 insertions(+), 184 deletions(-)
Title: Utilities for Japanese Mesh Code
Description: Helpful functions for using mesh code (80km to 125m) data in Japan. Visualize mesh code using 'ggplot2' and 'leaflet', etc.
Author: Shinya Uryu [aut, cre] (<https://orcid.org/0000-0002-0493-6186>)
Maintainer: Shinya Uryu <suika1127@gmail.com>
Diff between jpmesh versions 1.0.1 dated 2017-12-03 and 1.1.0 dated 2018-02-25
jpmesh-1.0.1/jpmesh/man/find_neighbor_mesh.Rd |only jpmesh-1.1.0/jpmesh/DESCRIPTION | 25 - jpmesh-1.1.0/jpmesh/MD5 | 80 ++-- jpmesh-1.1.0/jpmesh/NAMESPACE | 11 jpmesh-1.1.0/jpmesh/NEWS.md | 14 jpmesh-1.1.0/jpmesh/R/administration_mesh.R | 7 jpmesh-1.1.0/jpmesh/R/export_mesh.R | 42 +- jpmesh-1.1.0/jpmesh/R/find_neighbor_mesh.R | 173 ++++++---- jpmesh-1.1.0/jpmesh/R/fine_separate.R | 35 +- jpmesh-1.1.0/jpmesh/R/is_mesh.R |only jpmesh-1.1.0/jpmesh/R/latlon_to_mesh.R | 25 - jpmesh-1.1.0/jpmesh/R/mesh_to_latlon.R | 13 jpmesh-1.1.0/jpmesh/R/mesh_viewer.R | 4 jpmesh-1.1.0/jpmesh/R/rmesh.R |only jpmesh-1.1.0/jpmesh/R/sysdata.rda |binary jpmesh-1.1.0/jpmesh/R/util.R | 82 ++++ jpmesh-1.1.0/jpmesh/README.md | 72 ++-- jpmesh-1.1.0/jpmesh/build/vignette.rds |binary jpmesh-1.1.0/jpmesh/inst/Dockerfile |only jpmesh-1.1.0/jpmesh/inst/doc/usage.R | 7 jpmesh-1.1.0/jpmesh/inst/doc/usage.Rmd | 12 jpmesh-1.1.0/jpmesh/inst/doc/usage.html | 126 ++++--- jpmesh-1.1.0/jpmesh/inst/docker-compose.yml |only jpmesh-1.1.0/jpmesh/man/administration_mesh.Rd | 2 jpmesh-1.1.0/jpmesh/man/coords_to_mesh.Rd | 16 jpmesh-1.1.0/jpmesh/man/cut_off.Rd |only jpmesh-1.1.0/jpmesh/man/eval_jp_boundary.Rd | 4 jpmesh-1.1.0/jpmesh/man/export_mesh.Rd | 6 jpmesh-1.1.0/jpmesh/man/export_meshes.Rd |only jpmesh-1.1.0/jpmesh/man/figures/README-jpn_simple_map_sf-1.png |binary jpmesh-1.1.0/jpmesh/man/fine_separate.Rd | 12 jpmesh-1.1.0/jpmesh/man/is_mesh.Rd |only jpmesh-1.1.0/jpmesh/man/jpnrect.Rd | 22 - jpmesh-1.1.0/jpmesh/man/mesh_to_coords.Rd | 12 jpmesh-1.1.0/jpmesh/man/meshcode_set.Rd | 7 jpmesh-1.1.0/jpmesh/man/neighbor_mesh.Rd |only jpmesh-1.1.0/jpmesh/man/rmesh.Rd |only jpmesh-1.1.0/jpmesh/man/sf_jpmesh.Rd | 16 jpmesh-1.1.0/jpmesh/tests/testthat/test-data.R | 7 jpmesh-1.1.0/jpmesh/tests/testthat/test-export_mesh.R | 5 jpmesh-1.1.0/jpmesh/tests/testthat/test-find.R | 94 ++++- jpmesh-1.1.0/jpmesh/tests/testthat/test-fine_separate.R | 19 - jpmesh-1.1.0/jpmesh/tests/testthat/test-internal.R | 57 +++ jpmesh-1.1.0/jpmesh/tests/testthat/test-meshcode_to_latlon.R | 56 ++- jpmesh-1.1.0/jpmesh/tests/testthat/test-rmesh.R |only jpmesh-1.1.0/jpmesh/tests/testthat/test-utities.R |only jpmesh-1.1.0/jpmesh/vignettes/usage.Rmd | 12 47 files changed, 756 insertions(+), 319 deletions(-)
Title: Generalized Additive Models
Description: Functions for fitting and working with generalized
additive models, as described in chapter 7 of "Statistical Models in
S" (Chambers and Hastie (eds), 1991), and "Generalized Additive
Models" (Hastie and Tibshirani, 1990).
Author: Trevor Hastie
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between gam versions 1.14-4 dated 2017-04-25 and 1.15 dated 2018-02-25
ChangeLog | 4 ++ DESCRIPTION | 8 ++--- INDEX | 18 ++++++------ MD5 | 58 ++++++++++++++++++++-------------------- NAMESPACE | 26 +++++++++--------- R/anova.gam.R | 4 +- R/anova.gamlist.R | 2 - R/gam.R | 2 - R/gam.exact.R | 68 ++++++++++++++++++++++++------------------------ R/gamlist.R | 4 +- R/labels.gam.R | 2 - R/na.gam.replace.R | 17 +++++++----- R/newdata.predict.gam.R | 14 ++++----- R/plot.gam.R | 30 ++++++++++----------- R/plot.preplot.gam.R | 6 ++-- R/predict.gam.R | 10 +++---- R/preplot.gam.R | 12 ++++---- R/print.gam.R | 2 - R/print.gamex.R | 2 - R/print.summary.gam.R | 4 +- R/step.gam.R | 60 +++++++++++++++++++++--------------------- R/summary.gam.R | 42 ++++++++++++++--------------- man/anova.gam.Rd | 26 +++++++++--------- man/gam-internal.Rd | 14 ++++----- man/gam.Rd | 23 +++++++--------- man/gam.exact.Rd | 24 ++++++++-------- man/gam.scope.Rd | 10 +++---- man/plot.gam.Rd | 36 ++++++++++++------------- man/predict.gam.Rd | 26 +++++++++--------- man/step.gam.Rd | 22 +++++++-------- 30 files changed, 291 insertions(+), 285 deletions(-)
Title: Convert Strings into any Case
Description: A consistent, flexible and easy to use tool to parse and convert strings into cases like snake or camel among others.
Author: Malte Grosser [aut, cre]
Maintainer: Malte Grosser <malte.grosser@gmail.com>
Diff between snakecase versions 0.8.1 dated 2018-01-21 and 0.9.0 dated 2018-02-25
DESCRIPTION | 10 - MD5 | 45 ++-- NAMESPACE | 2 NEWS.md | 44 ++++ R/abbreviation_internal.R | 4 R/caseconverters.R | 98 +++------- R/check_design_rule.R | 35 ++- R/preprocess_internal.R | 11 - R/replace_special_characters_internal.R | 29 +-- R/to_any_case.R | 250 +++++++++++++------------- R/to_parsed_case_internal.R | 58 ++---- inst/doc/caseconverters.html | 4 man/abbreviation_internal.Rd | 6 man/caseconverter.Rd | 50 ++--- man/check_design_rule.Rd | 31 ++- man/preprocess_internal.Rd | 7 man/replace_special_characters_internal.Rd | 10 - man/to_any_case.Rd | 65 +++--- man/to_parsed_case_internal.Rd | 5 tests/testthat.R | 1 tests/testthat/helper-examples.R | 2 tests/testthat/test-to_any_case.R | 76 +++++-- tests/testthat/test-to_parsed_case_internal.R | 4 tests/testthat/test-to_swap_case.R |only 24 files changed, 464 insertions(+), 383 deletions(-)
Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially distributed animal population sampled with an array of passive detectors, such as traps, or by searching polygons or transects. Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secr versions 3.1.3 dated 2017-12-03 and 3.1.5 dated 2018-02-25
secr-3.1.3/secr/man/secr.model.density.Rd |only secr-3.1.3/secr/man/secr.model.detection.Rd |only secr-3.1.3/secr/man/secr.models.Rd |only secr-3.1.3/secr/man/simpopndetails.Rd |only secr-3.1.3/secr/vignettes/secr-overview_cache |only secr-3.1.3/secr/vignettes/secr-overview_files |only secr-3.1.5/secr/DESCRIPTION | 8 secr-3.1.5/secr/MD5 | 169 ++--- secr-3.1.5/secr/NAMESPACE | 19 secr-3.1.5/secr/NEWS | 823 +------------------------- secr-3.1.5/secr/R/AIC.R |only secr-3.1.5/secr/R/D.designdata.R | 1 secr-3.1.5/secr/R/Dsurface.R | 1 secr-3.1.5/secr/R/LLsurface.secr.R | 4 secr-3.1.5/secr/R/RMarkInput.R |only secr-3.1.5/secr/R/Rsurface.R | 2 secr-3.1.5/secr/R/addTelemetry.R | 13 secr-3.1.5/secr/R/as.data.frame.R | 15 secr-3.1.5/secr/R/derivedMS.R | 1 secr-3.1.5/secr/R/esa.R | 3 secr-3.1.5/secr/R/head.R | 1 secr-3.1.5/secr/R/join.R | 268 ++------ secr-3.1.5/secr/R/make.capthist.R | 2 secr-3.1.5/secr/R/make.grid.R | 6 secr-3.1.5/secr/R/methods.R | 601 ++++++++---------- secr-3.1.5/secr/R/model.average.R | 2 secr-3.1.5/secr/R/par.secr.fit.R | 12 secr-3.1.5/secr/R/pdot.R | 6 secr-3.1.5/secr/R/plot.mask.r | 13 secr-3.1.5/secr/R/plot.popn.R |only secr-3.1.5/secr/R/plot.secr.R | 5 secr-3.1.5/secr/R/plotMaskEdge.R | 25 secr-3.1.5/secr/R/predict.secr.R | 9 secr-3.1.5/secr/R/randomHabitat.R | 2 secr-3.1.5/secr/R/reduce.R | 67 +- secr-3.1.5/secr/R/secr.design.MS.R | 2 secr-3.1.5/secr/R/secr.fit.R | 10 secr-3.1.5/secr/R/secr.make.newdata.R | 197 ++---- secr-3.1.5/secr/R/secrloglik.R | 8 secr-3.1.5/secr/R/sim.capthist.R | 23 secr-3.1.5/secr/R/sim.popn.R | 108 ++- secr-3.1.5/secr/R/suggest.buffer.R | 3 secr-3.1.5/secr/R/superN.R |only secr-3.1.5/secr/R/telemetry.R | 4 secr-3.1.5/secr/R/utility.R | 317 +++++----- secr-3.1.5/secr/build/vignette.rds |binary secr-3.1.5/secr/data/OVpossum.RData |binary secr-3.1.5/secr/data/deermouse.RData |binary secr-3.1.5/secr/data/hornedlizard.RData |binary secr-3.1.5/secr/data/housemouse.RData |binary secr-3.1.5/secr/data/ovenbird.RData |binary secr-3.1.5/secr/data/ovensong.RData |binary secr-3.1.5/secr/data/possum.RData |binary secr-3.1.5/secr/data/secrdemo.RData |binary secr-3.1.5/secr/data/skink.RData |binary secr-3.1.5/secr/data/stoatDNA.RData |binary secr-3.1.5/secr/inst/doc/index.html | 47 + secr-3.1.5/secr/inst/doc/secr-datainput.R | 7 secr-3.1.5/secr/inst/doc/secr-datainput.Rmd | 7 secr-3.1.5/secr/inst/doc/secr-datainput.pdf |binary secr-3.1.5/secr/inst/doc/secr-manual.pdf |binary secr-3.1.5/secr/inst/doc/secr-overview.R | 23 secr-3.1.5/secr/inst/doc/secr-overview.Rmd | 51 - secr-3.1.5/secr/inst/doc/secr-overview.pdf |binary secr-3.1.5/secr/man/FAQ.Rd | 14 secr-3.1.5/secr/man/LLsurface.Rd | 35 - secr-3.1.5/secr/man/Parallel.Rd | 4 secr-3.1.5/secr/man/RMarkInput.Rd | 10 secr-3.1.5/secr/man/detectfn.Rd | 20 secr-3.1.5/secr/man/join.Rd | 21 secr-3.1.5/secr/man/manip.Rd |only secr-3.1.5/secr/man/mask.Rd | 10 secr-3.1.5/secr/man/plot.popn.Rd | 13 secr-3.1.5/secr/man/possum.Rd | 6 secr-3.1.5/secr/man/predict.secr.Rd | 17 secr-3.1.5/secr/man/reduce.capthist.Rd | 37 + secr-3.1.5/secr/man/secr-package.Rd | 15 secr-3.1.5/secr/man/secr.design.MS.Rd | 16 secr-3.1.5/secr/man/secr.fit.Rd | 2 secr-3.1.5/secr/man/secr.make.newdata.Rd | 3 secr-3.1.5/secr/man/secrRNG.Rd | 2 secr-3.1.5/secr/man/session.Rd | 4 secr-3.1.5/secr/man/sim.popn.Rd | 4 secr-3.1.5/secr/man/summary.capthist.Rd | 1 secr-3.1.5/secr/man/turnover.Rd |only secr-3.1.5/secr/src/detectfn.c | 71 ++ secr-3.1.5/secr/src/secr.c | 35 - secr-3.1.5/secr/src/secr.h | 17 secr-3.1.5/secr/vignettes/secr-datainput.Rmd | 7 secr-3.1.5/secr/vignettes/secr-overview.Rmd | 51 - 90 files changed, 1331 insertions(+), 1969 deletions(-)
Title: Fast Simulation of Normal/Exponential Random Variables and
Stochastic Differential Equations / Poisson Processes
Description: Fast simulation of some random variables than the usual native functions, including rnorm() and rexp(), using Ziggurat method, reference: MARSAGLIA, George, TSANG, Wai Wan, and al. (2000) <doi:10.18637/jss.v005.i08>, and fast simulation of stochastic differential equations / Poisson processes.
Author: Nicolas Baradel
Maintainer: Nicolas Baradel - PGM Solutions <nicolas.baradel@pgm-solutions.com>
Diff between rpgm versions 1.1.1 dated 2017-11-14 and 1.1.2 dated 2018-02-25
DESCRIPTION | 8 ++-- MD5 | 21 ++++++----- R/rbrownian.R | 6 ++- man/rbrownian.Rd | 9 +++-- src/rbrownian.cpp | 90 +++++++++++++++++++++++++++++++++++++-------------- src/rbrownian_mc.cpp |only src/rnorm_mc.cpp | 30 ++++------------- src/rnorm_mc.h | 6 ++- src/rnorm_rpgm.h | 3 + src/rpgm_init.c | 6 +-- src/threads.cpp | 56 ++++++++++++++++++++----------- src/threads.h | 14 +++++++ 12 files changed, 159 insertions(+), 90 deletions(-)
Title: Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Description: Designed to replace the tables which were in the back of the first two editions of Hollander and Wolfe - Nonparametric Statistical Methods. Exact procedures are performed when computationally possible. Monte Carlo and Asymptotic procedures are performed otherwise. For those procedures included in the base packages, our code simply provides a wrapper to standardize the output with the other procedures in the package.
Author: Grant Schneider, Eric Chicken, Rachel Becvarik
Maintainer: Grant Schneider <schneider.393@osu.edu>
Diff between NSM3 versions 1.10 dated 2017-09-20 and 1.11 dated 2018-02-25
DESCRIPTION | 8 ++-- MD5 | 11 +++--- NAMESPACE | 1 R/print.NSM3Ch9ChickFn.R |only R/theil.R | 84 +++++++++++++++++++++-------------------------- man/print.NSM3Ch5c.Rd | 71 ++++++++++++++++++++------------------- man/theil.Rd | 81 +++++++++++++++++++++++++++------------------ 7 files changed, 135 insertions(+), 121 deletions(-)
Title: Functional Data Analysis and Empirical Dynamics
Description: Provides implementation of various methods of Functional Data
Analysis (FDA) and Empirical Dynamics. The core of this package is Functional
Principal Component Analysis (FPCA), a key technique for functional data
analysis, for sparsely or densely sampled random trajectories and time courses,
via the Principal Analysis by Conditional Estimation (PACE) algorithm or
numerical integration. PACE is useful for the analysis of data that have been
generated by a sample of underlying (but usually not fully observed) random
trajectories. It does not rely on pre-smoothing of trajectories, which is
problematic if functional data are sparsely sampled. PACE provides options
for functional regression and correlation, for Longitudinal Data Analysis,
the analysis of stochastic processes from samples of realized trajectories,
and for the analysis of underlying dynamics. The core computational algorithms
are implemented using the 'Eigen' C++ library for numerical linear algebra and
'RcppEigen' "glue".
Author: Xiongtao Dai [aut],
Pantelis Z. Hadjipantelis [aut, cre],
Kynghee Han [aut],
Hao Ji [aut],
Shu-Chin Lin [ctb],
Hans-Georg Mueller [cph, ths],
Jane-Ling Wang [cph, ths]
Maintainer: Pantelis Z. Hadjipantelis <pantelis@ucdavis.edu>
Diff between fdapace versions 0.3.0 dated 2017-01-25 and 0.4.0 dated 2018-02-25
fdapace-0.3.0/fdapace/inst/doc/fdapaceVignetteKnitr.R |only fdapace-0.3.0/fdapace/inst/doc/fdapaceVignetteKnitr.Rnw |only fdapace-0.3.0/fdapace/inst/doc/fdapaceVignetteKnitr.pdf |only fdapace-0.3.0/fdapace/vignettes/Sweavel.sty |only fdapace-0.3.0/fdapace/vignettes/fdapaceVignetteKnitr.Rnw |only fdapace-0.4.0/fdapace/DESCRIPTION | 48 ++- fdapace-0.4.0/fdapace/LICENSE | 2 fdapace-0.4.0/fdapace/MD5 | 202 ++++++++------- fdapace-0.4.0/fdapace/NAMESPACE | 18 + fdapace-0.4.0/fdapace/NEWS | 13 fdapace-0.4.0/fdapace/R/CVLwls1D.R | 27 +- fdapace-0.4.0/fdapace/R/CheckData.R | 31 -- fdapace-0.4.0/fdapace/R/CheckOptions.R | 20 + fdapace-0.4.0/fdapace/R/CompFntCent.R |only fdapace-0.4.0/fdapace/R/CondProjection.R |only fdapace-0.4.0/fdapace/R/CreateBasis.R | 28 +- fdapace-0.4.0/fdapace/R/CreateModeOfVarPlot.R | 12 fdapace-0.4.0/fdapace/R/CreateOutliersPlot.R | 2 fdapace-0.4.0/fdapace/R/CreateStringingPlot.R |only fdapace-0.4.0/fdapace/R/FAM.R |only fdapace-0.4.0/fdapace/R/FCReg.R | 4 fdapace-0.4.0/fdapace/R/FClust.R | 35 +- fdapace-0.4.0/fdapace/R/FOptDes.R | 3 fdapace-0.4.0/fdapace/R/FPCA.R | 46 +-- fdapace-0.4.0/fdapace/R/FPCAder.R | 107 +++---- fdapace-0.4.0/fdapace/R/FPCReg.R |only fdapace-0.4.0/fdapace/R/FSVD.R | 20 - fdapace-0.4.0/fdapace/R/GCVLwls2DV2.R | 34 +- fdapace-0.4.0/fdapace/R/GetCovDense.R | 4 fdapace-0.4.0/fdapace/R/GetEigenAnalysisResults.R | 2 fdapace-0.4.0/fdapace/R/GetSmoothedCovarSurface.R | 2 fdapace-0.4.0/fdapace/R/GetSmoothedMeanCurve.R | 3 fdapace-0.4.0/fdapace/R/Lwls1D.R | 4 fdapace-0.4.0/fdapace/R/MakeFPCAInputs.R | 16 - fdapace-0.4.0/fdapace/R/MakeResultFPCA.R | 31 ++ fdapace-0.4.0/fdapace/R/MgnJntDensity.R |only fdapace-0.4.0/fdapace/R/MultiFAM.R |only fdapace-0.4.0/fdapace/R/NWMgnReg.R |only fdapace-0.4.0/fdapace/R/NormCurveToArea.R |only fdapace-0.4.0/fdapace/R/NormKernel.R |only fdapace-0.4.0/fdapace/R/RcppExports.R | 46 ++- fdapace-0.4.0/fdapace/R/SBFCompUpdate.R |only fdapace-0.4.0/fdapace/R/SBFitting.R |only fdapace-0.4.0/fdapace/R/ScaleKernel.R |only fdapace-0.4.0/fdapace/R/SelectK.R | 13 fdapace-0.4.0/fdapace/R/SetOptions.R | 10 fdapace-0.4.0/fdapace/R/Stringing.R |only fdapace-0.4.0/fdapace/R/WFDA.R | 9 fdapace-0.4.0/fdapace/R/pkgname.R | 3 fdapace-0.4.0/fdapace/R/plot.FPCA.R | 7 fdapace-0.4.0/fdapace/R/predict.FPCA.R |only fdapace-0.4.0/fdapace/R/print.WFDA.R |only fdapace-0.4.0/fdapace/R/str.FPCA.R | 6 fdapace-0.4.0/fdapace/build/vignette.rds |binary fdapace-0.4.0/fdapace/inst/doc/fdapaceVig.R |only fdapace-0.4.0/fdapace/inst/doc/fdapaceVig.Rmd |only fdapace-0.4.0/fdapace/inst/doc/fdapaceVig.html |only fdapace-0.4.0/fdapace/man/BwNN.Rd | 1 fdapace-0.4.0/fdapace/man/CheckData.Rd | 1 fdapace-0.4.0/fdapace/man/CheckOptions.Rd | 1 fdapace-0.4.0/fdapace/man/ConvertSupport.Rd | 1 fdapace-0.4.0/fdapace/man/CreateBWPlot.Rd | 1 fdapace-0.4.0/fdapace/man/CreateBasis.Rd |only fdapace-0.4.0/fdapace/man/CreateCovPlot.Rd | 1 fdapace-0.4.0/fdapace/man/CreateDesignPlot.Rd | 1 fdapace-0.4.0/fdapace/man/CreateFuncBoxPlot.Rd | 1 fdapace-0.4.0/fdapace/man/CreateModeOfVarPlot.Rd | 1 fdapace-0.4.0/fdapace/man/CreateOutliersPlot.Rd | 3 fdapace-0.4.0/fdapace/man/CreatePathPlot.Rd | 1 fdapace-0.4.0/fdapace/man/CreateScreePlot.Rd | 1 fdapace-0.4.0/fdapace/man/CreateStringingPlot.Rd |only fdapace-0.4.0/fdapace/man/FAM.Rd |only fdapace-0.4.0/fdapace/man/FCCor.Rd | 1 fdapace-0.4.0/fdapace/man/FCReg.Rd | 5 fdapace-0.4.0/fdapace/man/FClust.Rd | 21 - fdapace-0.4.0/fdapace/man/FOptDes.Rd | 1 fdapace-0.4.0/fdapace/man/FPCA.Rd | 4 fdapace-0.4.0/fdapace/man/FPCAder.Rd | 53 +++ fdapace-0.4.0/fdapace/man/FPCReg.Rd |only fdapace-0.4.0/fdapace/man/FSVD.Rd | 1 fdapace-0.4.0/fdapace/man/FVPA.Rd | 1 fdapace-0.4.0/fdapace/man/GetCrCorYX.Rd | 1 fdapace-0.4.0/fdapace/man/GetCrCorYZ.Rd | 1 fdapace-0.4.0/fdapace/man/GetCrCovYX.Rd | 1 fdapace-0.4.0/fdapace/man/GetCrCovYZ.Rd | 1 fdapace-0.4.0/fdapace/man/GetNormalisedSample.Rd | 1 fdapace-0.4.0/fdapace/man/Lwls1D.Rd | 1 fdapace-0.4.0/fdapace/man/Lwls2D.Rd | 1 fdapace-0.4.0/fdapace/man/Lwls2DDeriv.Rd | 1 fdapace-0.4.0/fdapace/man/MakeBWtoZscore02y.Rd | 1 fdapace-0.4.0/fdapace/man/MakeFPCAInputs.Rd | 5 fdapace-0.4.0/fdapace/man/MakeGPFunctionalData.Rd | 1 fdapace-0.4.0/fdapace/man/MakeHCtoZscore02y.Rd | 1 fdapace-0.4.0/fdapace/man/MakeLNtoZscore02y.Rd | 1 fdapace-0.4.0/fdapace/man/MakeSparseGP.Rd | 1 fdapace-0.4.0/fdapace/man/MultiFAM.Rd |only fdapace-0.4.0/fdapace/man/NormCurvToArea.Rd |only fdapace-0.4.0/fdapace/man/SBFitting.Rd |only fdapace-0.4.0/fdapace/man/SelectK.Rd | 2 fdapace-0.4.0/fdapace/man/SetOptions.Rd | 1 fdapace-0.4.0/fdapace/man/Sparsify.Rd | 1 fdapace-0.4.0/fdapace/man/Stringing.Rd |only fdapace-0.4.0/fdapace/man/WFDA.Rd | 4 fdapace-0.4.0/fdapace/man/Wiener.Rd | 1 fdapace-0.4.0/fdapace/man/cumtrapzRcpp.Rd |only fdapace-0.4.0/fdapace/man/fdapace.Rd | 1 fdapace-0.4.0/fdapace/man/fitted.FPCA.Rd | 1 fdapace-0.4.0/fdapace/man/fitted.FPCAder.Rd | 1 fdapace-0.4.0/fdapace/man/kCFC.Rd | 1 fdapace-0.4.0/fdapace/man/medfly25.Rd | 1 fdapace-0.4.0/fdapace/man/plot.FPCA.Rd | 1 fdapace-0.4.0/fdapace/man/predict.FPCA.Rd |only fdapace-0.4.0/fdapace/man/print.FPCA.Rd | 1 fdapace-0.4.0/fdapace/man/print.FSVD.Rd | 1 fdapace-0.4.0/fdapace/man/print.WFDA.Rd |only fdapace-0.4.0/fdapace/man/str.FPCA.Rd |only fdapace-0.4.0/fdapace/man/trapzRcpp.Rd |only fdapace-0.4.0/fdapace/src/RcppExports.cpp | 60 +++- fdapace-0.4.0/fdapace/src/cumtrapzRcpp.cpp | 8 fdapace-0.4.0/fdapace/src/trapzRcpp.cpp | 6 fdapace-0.4.0/fdapace/vignettes/fdapaceVig.Rmd |only 121 files changed, 625 insertions(+), 393 deletions(-)
Title: Algorithms using Alternating Direction Method of Multipliers
Description: Provides algorithms to solve popular optimization problems in statistics such as regression or denoising based on Alternating Direction Method of Multipliers (ADMM).
See Boyd et al (2010) <doi:10.1561/2200000016> for complete introduction to the method.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>),
Xiaozhi Zhu [aut]
Maintainer: Kisung You <kyou@nd.edu>
Diff between ADMM versions 0.2.1 dated 2018-02-05 and 0.2.2 dated 2018-02-25
DESCRIPTION | 15 +++++++------- MD5 | 48 +++++++++++++++++++++++++--------------------- NAMESPACE | 3 ++ R/RcppExports.R | 12 +++++++++++ R/admm-package.R | 14 ++++++++++++- R/admm.bp.R | 2 - R/admm.enet.R |only R/admm.genlasso.R |only R/admm.lad.R | 2 - R/admm.lasso.R | 51 ++++++++++++++++++++++++++++++++----------------- R/admm.rpca.R | 6 ++--- R/admm.spca.R | 6 ++--- R/admm.tv.R | 4 +-- R/auxiliary.R | 16 +++++++++++++++ build/partial.rdb |binary inst/REFERENCES.bib | 52 ++++++++++++++++++++++++++++++++++++++++++++++++++ man/ADMM.Rd | 13 +++++++++++- man/BP.Rd | 2 - man/ENET.Rd |only man/GENLASSO.Rd |only man/LAD.Rd | 2 - man/LASSO.Rd | 16 ++++++--------- man/RPCA.Rd | 6 ++--- man/SPCA.Rd | 6 ++--- man/TV.Rd | 4 +-- src/RcppExports.cpp | 38 ++++++++++++++++++++++++++++++++++++ src/admm_enet.cpp |only src/admm_genlasso.cpp |only 28 files changed, 242 insertions(+), 76 deletions(-)
Title: Driving Offences in New Zealand Between 2009 and 2016
Description: Datasets of driving offences and fines in New Zealand between 2009 and 2017.
Originally published by the New Zealand Police at
<http://www.police.govt.nz/about-us/publication/road-policing-driver-offence-data-january-2009-december-2017>.
Author: Duncan Garmonsway [aut, cre]
Maintainer: Duncan Garmonsway <nacnudus@gmail.com>
Diff between nzpullover versions 0.0.2 dated 2017-01-29 and 0.3.0 dated 2018-02-25
DESCRIPTION | 12 ++++++------ MD5 | 36 ++++++++++++++++++++---------------- NEWS.md |only R/driving-offences.R | 13 +++++++------ R/excess.R | 7 ++++--- R/fleeing-area.R | 7 ++++--- R/fleeing-district.R | 7 ++++--- R/police-speeding-band.R |only R/police-speeding.R | 7 ++++--- data/driving_offences.rda |binary data/excess.rda |binary data/fleeing_area.rda |binary data/fleeing_district.rda |binary data/police_speeding.rda |binary data/police_speeding_band.rda |only man/driving_offences.Rd | 13 +++++++------ man/excess.Rd | 7 ++++--- man/fleeing_area.Rd | 7 ++++--- man/fleeing_district.Rd | 7 ++++--- man/police_speeding.Rd | 7 ++++--- man/police_speeding_band.Rd |only 21 files changed, 72 insertions(+), 58 deletions(-)
Title: Styling of Graphics using Cascading Style Sheets
Description: Provides a means to style plots through cascading style sheets.
This separates the aesthetics from the data crunching in plots and charts.
Author: Tomasz Konopka [aut, cre]
Maintainer: Tomasz Konopka <tokonopka@gmail.com>
Diff between Rcssplot versions 0.2.0.0 dated 2017-03-06 and 0.3.0 dated 2018-02-25
Rcssplot-0.2.0.0/Rcssplot/README.md |only Rcssplot-0.3.0/Rcssplot/DESCRIPTION | 10 Rcssplot-0.3.0/Rcssplot/MD5 | 96 +- Rcssplot-0.3.0/Rcssplot/NAMESPACE | 3 Rcssplot-0.3.0/Rcssplot/R/Rcss.R | 431 ----------- Rcssplot-0.3.0/Rcssplot/R/RcssGet.R |only Rcssplot-0.3.0/Rcssplot/R/RcssLexer.R | 79 -- Rcssplot-0.3.0/Rcssplot/R/RcssParser.R | 95 +- Rcssplot-0.3.0/Rcssplot/R/RcssUpdate.R |only Rcssplot-0.3.0/Rcssplot/build/vignette.rds |binary Rcssplot-0.3.0/Rcssplot/inst/doc/Rcssplot.R | 14 Rcssplot-0.3.0/Rcssplot/inst/doc/Rcssplot.Rnw | 39 Rcssplot-0.3.0/Rcssplot/inst/doc/Rcssplot.pdf |binary Rcssplot-0.3.0/Rcssplot/man/Rcss.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/RcssChange.Rd |only Rcssplot-0.3.0/Rcssplot/man/RcssChangePropertyValue.Rd | 6 Rcssplot-0.3.0/Rcssplot/man/RcssCompulsoryClass.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/RcssDefaultStyle.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/RcssGetCompulsoryClass.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/RcssGetDefaultStyle.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/RcssGetPropertyValue.Rd | 6 Rcssplot-0.3.0/Rcssplot/man/RcssGetPropertyValueOrDefault.Rd | 10 Rcssplot-0.3.0/Rcssplot/man/RcssOverload.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/RcssProperty.Rd |only Rcssplot-0.3.0/Rcssplot/man/RcssValue.Rd |only Rcssplot-0.3.0/Rcssplot/man/Rcssabline.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssarrows.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssaxis.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssbarplot.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssbox.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssboxplot.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcsscontour.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssgrid.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcsshist.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssjpeg.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcsslegend.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcsslines.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssmatplot.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssmtext.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcsspar.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcsspdf.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssplot.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcsspng.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcsspoints.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcsspolygon.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssrect.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcssstripchart.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcsstext.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/Rcsstitle.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/print.Rcss.Rd | 1 Rcssplot-0.3.0/Rcssplot/man/printRcss.Rd | 1 Rcssplot-0.3.0/Rcssplot/vignettes/Rcssplot.Rnw | 39 52 files changed, 228 insertions(+), 632 deletions(-)
Title: Bayesian Inference for Beta Regression and Zero-or-One Inflated
Beta Regression
Description: Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu <fang.liu.131@nd.edu> with contributions from Yunchuan Kong
Maintainer: Fang Liu <fang.liu.131@nd.edu>
Diff between zoib versions 1.4.2 dated 2016-10-18 and 1.5.0 dated 2018-02-25
DESCRIPTION | 12 ++--- MD5 | 14 +++--- NAMESPACE | 4 - R/pred.zoib.R |only R/zoib.R | 119 ++++++++++++++++++++++++++++++++++++++-------------- man/pred.zoib.Rd |only man/zoib-package.Rd | 4 - man/zoib.Rd | 12 ++--- tests/test1.R | 2 9 files changed, 113 insertions(+), 54 deletions(-)