Title: A Menu-Driven GUI for Analyzing and Modelling Data of Just
Finance and Econometrics
Description: The Just Finance and Econometrics ('JFE') provides a 'tcltk' based interface to global assets selection and portfolio optimization. 'JFE' aims to provide a simple GUI that allows a user to quickly load data from a .RData (.rda) file, explore the data and evaluate financial models. Invoked as JFE(), 'JFE' exports a number of utility functions for visualizing assets price (e.g. technical charting) and returns, selecting assets by performance index (based on the package 'PerformanceAnalytics') and backtesting specific portfolio profiles (based on the package 'fPortfolio').
Author: Ho Tsung-wu
Maintainer: Ho Tsung-wu <tsungwu@mail.shu.edu.tw>
Diff between JFE versions 1.0 dated 2017-12-06 and 1.2 dated 2018-03-02
DESCRIPTION | 14 +-- MD5 | 14 +-- NAMESPACE | 1 R/02price.R | 69 +++++++++------ R/03returns.R | 216 +++++++++++++++++++++++++++++++++++++++++++++----- R/04assetsSelection.R | 41 +++++---- R/05Portfolio.R | 3 R/JFE.R | 6 - 8 files changed, 279 insertions(+), 85 deletions(-)
Title: Dose Finding in Drug Combination Phase I Trials Using PO-CRM
Description: Provides functions to implement and simulate the partial order continual reassessment method (PO-CRM) of Wages, Conaway and O'Quigley (2011) <doi:10.1177/1740774511408748> for use in Phase I trials of combinations of agents. Provides a function for generating a set of initial guesses (skeleton) for the toxicity probabilities at each combination that correspond to the set of possible orderings of the toxicity probabilities specified by the user.
Author: Nolan A. Wages
Maintainer: "Varhegyi, Nikole E. (nev4g)" <nev4g@virginia.edu>
Diff between pocrm versions 0.9 dated 2015-04-09 and 0.11 dated 2018-03-02
DESCRIPTION | 13 +++++++------ MD5 | 6 +++--- NAMESPACE | 1 + man/pocrm.sim.Rd | 2 +- 4 files changed, 12 insertions(+), 10 deletions(-)
Title: Multivariate Nonparametric Methods. An Approach Based on Spatial
Signs and Ranks
Description: Multivariate tests, estimates and methods based on the identity score, spatial sign score and spatial rank score are provided. The methods include one and c-sample problems, shape estimation and testing, linear regression and principal components. The methodology is described in Oja (2010) <doi:10.1007/978-1-4419-0468-3> and Nordhausen and Oja (2011) <doi:10.18637/jss.v043.i05>.
Author: Klaus Nordhausen, Jyrki Mottonen, Hannu Oja
Maintainer: Klaus Nordhausen <klaus.nordhausen@tuwien.ac.at>
Diff between MNM versions 1.0-2 dated 2016-06-29 and 1.0-3 dated 2018-03-02
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- data/beans.rda |binary inst/ChangeLog | 5 +++++ man/MNM-package.Rd | 11 ++++++----- 5 files changed, 21 insertions(+), 15 deletions(-)
Title: Tools for Exploring Multivariate Data via ICS/ICA
Description: Implementation of Tyler, Critchley, Duembgen and Oja's (JRSS B, 2009,
<doi:10.1111/j.1467-9868.2009.00706.x>) and Oja, Sirkia and Eriksson's
(AJS, 2006, <http://www.ajs.or.at/index.php/ajs/article/view/vol35,%20no2%263%20-%207>) method of two different
scatter matrices to obtain an invariant coordinate system or independent
components, depending on the underlying assumptions.
Author: Klaus Nordhausen, Hannu Oja, David E. Tyler
Maintainer: Klaus Nordhausen <klaus.nordhausen@tuwien.ac.at>
Diff between ICS versions 1.3-0 dated 2016-11-12 and 1.3-1 dated 2018-03-02
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- build/vignette.rds |binary inst/CHANGES | 4 ++++ inst/doc/ICS.pdf |binary man/ICS-package.Rd | 6 +++--- 6 files changed, 17 insertions(+), 13 deletions(-)
Title: Provides Easy Downloading Capabilities for the UK Parliament API
Description: Provides functions to download data from the
<http://www.data.parliament.uk/> APIs. Because of the structure of the API,
there is a named function for each type of available data for ease of use,
as well as some functions designed to retrieve specific pieces of commonly
used data. Functions for each new API will be added as and when they become
available.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between hansard versions 0.5.5 dated 2017-10-09 and 0.6.0 dated 2018-03-02
hansard-0.5.5/hansard/tests/testthat-allq.R |only hansard-0.5.5/hansard/tests/testthat/test_all_answered_questions.R |only hansard-0.6.0/hansard/DESCRIPTION | 22 hansard-0.6.0/hansard/LICENSE | 4 hansard-0.6.0/hansard/MD5 | 278 +-- hansard-0.6.0/hansard/NAMESPACE | 203 +- hansard-0.6.0/hansard/NEWS.md | 735 ++++---- hansard-0.6.0/hansard/R/all_answered_questions.R | 367 ++-- hansard-0.6.0/hansard/R/bill_publications.R |only hansard-0.6.0/hansard/R/bill_stage_types.R | 83 hansard-0.6.0/hansard/R/bills.R | 185 +- hansard-0.6.0/hansard/R/commons_answered_questions.R | 236 +- hansard-0.6.0/hansard/R/commons_division_date.R | 136 - hansard-0.6.0/hansard/R/commons_divisions.R | 227 +- hansard-0.6.0/hansard/R/commons_oral_question_times.R | 220 +- hansard-0.6.0/hansard/R/commons_oral_questions.R | 210 +- hansard-0.6.0/hansard/R/commons_terms.R | 183 +- hansard-0.6.0/hansard/R/commons_written_questions.R | 212 +- hansard-0.6.0/hansard/R/constituencies.R | 137 - hansard-0.6.0/hansard/R/data.R |only hansard-0.6.0/hansard/R/early_day_motions.R | 195 +- hansard-0.6.0/hansard/R/election_candidates.R | 255 +- hansard-0.6.0/hansard/R/election_results.R | 353 ++- hansard-0.6.0/hansard/R/elections.R | 217 +- hansard-0.6.0/hansard/R/epetition.R | 199 +- hansard-0.6.0/hansard/R/epetition_tibble.R | 188 +- hansard-0.6.0/hansard/R/hansard-defunct.R | 256 +- hansard-0.6.0/hansard/R/hansard-package.R | 61 hansard-0.6.0/hansard/R/hansard_generic.R | 92 - hansard-0.6.0/hansard/R/lord_vote_record.R | 256 +- hansard-0.6.0/hansard/R/lords_amendments.R | 153 - hansard-0.6.0/hansard/R/lords_attendance_date.R | 138 - hansard-0.6.0/hansard/R/lords_attendance_session.R | 188 +- hansard-0.6.0/hansard/R/lords_divisions.R | 225 +- hansard-0.6.0/hansard/R/lords_interests.R | 145 - hansard-0.6.0/hansard/R/lords_sessions.R | 135 - hansard-0.6.0/hansard/R/lords_written_questions.R | 222 +- hansard-0.6.0/hansard/R/members.R | 384 ++-- hansard-0.6.0/hansard/R/members_search.R | 149 - hansard-0.6.0/hansard/R/mp_edms.R | 253 +- hansard-0.6.0/hansard/R/mp_questions.R | 316 +-- hansard-0.6.0/hansard/R/mp_vote_record.R | 310 +-- hansard-0.6.0/hansard/R/papers_laid.R | 209 +- hansard-0.6.0/hansard/R/publication_logs.R | 202 +- hansard-0.6.0/hansard/R/research_briefings.R | 299 +-- hansard-0.6.0/hansard/R/research_briefings_lists.R | 181 + hansard-0.6.0/hansard/R/sessions_info.R | 181 - hansard-0.6.0/hansard/R/tv_programmes.R | 359 +-- hansard-0.6.0/hansard/R/utils-aaq.R | 373 ++-- hansard-0.6.0/hansard/R/utils-baseurl.R |only hansard-0.6.0/hansard/R/utils-bills.R | 34 hansard-0.6.0/hansard/R/utils-commons.R | 782 ++++---- hansard-0.6.0/hansard/R/utils-constit.R | 52 hansard-0.6.0/hansard/R/utils-edm.R | 409 ++-- hansard-0.6.0/hansard/R/utils-elections.R | 85 hansard-0.6.0/hansard/R/utils-epetition.R | 48 hansard-0.6.0/hansard/R/utils-hansard-tidy.R | 80 hansard-0.6.0/hansard/R/utils-loop.R |only hansard-0.6.0/hansard/R/utils-lords.R | 710 ++++--- hansard-0.6.0/hansard/R/utils-mp-questions.R | 123 - hansard-0.6.0/hansard/R/utils-publogs.R | 36 hansard-0.6.0/hansard/R/utils-research.R |only hansard-0.6.0/hansard/R/utils-sessions.R |only hansard-0.6.0/hansard/R/utils-tv.R | 156 - hansard-0.6.0/hansard/README.md |only hansard-0.6.0/hansard/build/vignette.rds |binary hansard-0.6.0/hansard/data |only hansard-0.6.0/hansard/inst/CITATION | 22 hansard-0.6.0/hansard/inst/doc/introduction.R | 140 - hansard-0.6.0/hansard/inst/doc/introduction.Rmd | 434 ++-- hansard-0.6.0/hansard/inst/doc/introduction.html | 908 ++++++---- hansard-0.6.0/hansard/man/all_answered_questions.Rd | 212 +- hansard-0.6.0/hansard/man/bill_publication_types.Rd |only hansard-0.6.0/hansard/man/bill_publications.Rd |only hansard-0.6.0/hansard/man/bill_stage_types.Rd | 73 hansard-0.6.0/hansard/man/bills.Rd | 125 - hansard-0.6.0/hansard/man/commons_answered_questions.Rd | 154 + hansard-0.6.0/hansard/man/commons_division_date.Rd | 78 hansard-0.6.0/hansard/man/commons_divisions.Rd | 113 - hansard-0.6.0/hansard/man/commons_oral_question_times.Rd | 117 - hansard-0.6.0/hansard/man/commons_oral_questions.Rd | 138 - hansard-0.6.0/hansard/man/commons_terms.Rd | 89 hansard-0.6.0/hansard/man/commons_written_questions.Rd | 120 - hansard-0.6.0/hansard/man/constituencies.Rd | 85 hansard-0.6.0/hansard/man/early_day_motions.Rd | 137 - hansard-0.6.0/hansard/man/election_candidates.Rd | 104 - hansard-0.6.0/hansard/man/election_results.Rd | 135 - hansard-0.6.0/hansard/man/elections.Rd | 139 - hansard-0.6.0/hansard/man/epetition.Rd | 94 - hansard-0.6.0/hansard/man/epetition_tibble.Rd | 130 - hansard-0.6.0/hansard/man/hansard.Rd | 53 hansard-0.6.0/hansard/man/hansard_generic.Rd | 57 hansard-0.6.0/hansard/man/lord_vote_record.Rd | 121 - hansard-0.6.0/hansard/man/lords_amendments.Rd | 106 - hansard-0.6.0/hansard/man/lords_ammendments.Rd | 22 hansard-0.6.0/hansard/man/lords_attendance.Rd | 106 - hansard-0.6.0/hansard/man/lords_attendance_date.Rd | 92 - hansard-0.6.0/hansard/man/lords_attendance_session.Rd | 124 - hansard-0.6.0/hansard/man/lords_divisions.Rd | 120 - hansard-0.6.0/hansard/man/lords_interests.Rd | 87 hansard-0.6.0/hansard/man/lords_sessions.Rd | 86 hansard-0.6.0/hansard/man/lords_written_questions.Rd | 145 - hansard-0.6.0/hansard/man/members.Rd | 155 - hansard-0.6.0/hansard/man/members_search.Rd | 87 hansard-0.6.0/hansard/man/mp_edms.Rd | 142 - hansard-0.6.0/hansard/man/mp_questions.Rd | 141 - hansard-0.6.0/hansard/man/mp_vote_record.Rd | 124 - hansard-0.6.0/hansard/man/papers_laid.Rd | 109 - hansard-0.6.0/hansard/man/publication_logs.Rd | 111 - hansard-0.6.0/hansard/man/research_briefings.Rd | 148 - hansard-0.6.0/hansard/man/research_briefings_lists.Rd | 104 - hansard-0.6.0/hansard/man/sessions_info.Rd | 111 - hansard-0.6.0/hansard/man/tv_programmes.Rd | 175 + hansard-0.6.0/hansard/tests/testthat-all1q.R |only hansard-0.6.0/hansard/tests/testthat-all2q.R |only hansard-0.6.0/hansard/tests/testthat-b.R | 8 hansard-0.6.0/hansard/tests/testthat-com.R | 8 hansard-0.6.0/hansard/tests/testthat-con.R | 8 hansard-0.6.0/hansard/tests/testthat-ea.R | 8 hansard-0.6.0/hansard/tests/testthat-election_candidates.R | 8 hansard-0.6.0/hansard/tests/testthat-election_results.R | 8 hansard-0.6.0/hansard/tests/testthat-elections.R | 8 hansard-0.6.0/hansard/tests/testthat-ep.R | 8 hansard-0.6.0/hansard/tests/testthat-lords1.R | 8 hansard-0.6.0/hansard/tests/testthat-lords2.R | 8 hansard-0.6.0/hansard/tests/testthat-mem.R | 8 hansard-0.6.0/hansard/tests/testthat-misc1.R | 8 hansard-0.6.0/hansard/tests/testthat-misc2.R | 8 hansard-0.6.0/hansard/tests/testthat-mp.R | 8 hansard-0.6.0/hansard/tests/testthat-r.R | 8 hansard-0.6.0/hansard/tests/testthat/test_1all_answered_questions.R |only hansard-0.6.0/hansard/tests/testthat/test_2all_answered_questions.R |only hansard-0.6.0/hansard/tests/testthat/test_bills.R | 60 hansard-0.6.0/hansard/tests/testthat/test_commons_functions.R | 159 - hansard-0.6.0/hansard/tests/testthat/test_constituencies.R | 28 hansard-0.6.0/hansard/tests/testthat/test_early_day_motions.R | 56 hansard-0.6.0/hansard/tests/testthat/test_election_candidates.R | 32 hansard-0.6.0/hansard/tests/testthat/test_election_results.R | 34 hansard-0.6.0/hansard/tests/testthat/test_elections.R | 77 hansard-0.6.0/hansard/tests/testthat/test_epetition.R | 56 hansard-0.6.0/hansard/tests/testthat/test_lords1.R | 90 hansard-0.6.0/hansard/tests/testthat/test_lords2.R | 104 - hansard-0.6.0/hansard/tests/testthat/test_members.R | 85 hansard-0.6.0/hansard/tests/testthat/test_misc1.R | 92 - hansard-0.6.0/hansard/tests/testthat/test_misc2.R | 74 hansard-0.6.0/hansard/tests/testthat/test_mp_misc.R | 66 hansard-0.6.0/hansard/tests/testthat/test_research_briefings.R | 63 hansard-0.6.0/hansard/vignettes/introduction.Rmd | 434 ++-- 148 files changed, 11096 insertions(+), 9054 deletions(-)
Title: Multivariate Adaptive Regression Splines
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression
Splines" <doi:10.1214/aos/1176347963>.
(The term "MARS" is trademarked and thus not used in
the name of the package.)
Author: Stephen Milborrow. Derived from mda:mars by Trevor Hastie and
Rob Tibshirani. Uses Alan Miller's Fortran utilities
with Thomas Lumley's leaps wrapper.
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between earth versions 4.6.0 dated 2017-12-15 and 4.6.1 dated 2018-03-02
DESCRIPTION | 9 +++++---- MD5 | 22 +++++++++++----------- NEWS | 7 +++++++ R/lib.R | 2 +- R/varmod.R | 6 +++++- build/partial.rdb |binary inst/doc/earth-notes.pdf |binary inst/doc/earth-varmod.pdf |binary inst/slowtests/test.full.Rout.save | 4 ++-- inst/slowtests/test.varmod.Rout.save | 2 +- inst/slowtests/test.varmod.mgcv.Rout.save | 2 +- inst/slowtests/test.weights.Rout.save | 2 +- 12 files changed, 34 insertions(+), 22 deletions(-)
Title: Check the Properties of Common R Objects
Description: Expressive assertive pipe-friendly functions to check the properties of common R objects.
In the case of failure the functions issue informative error messages that
(hopefully!) allow users to quickly identify and fix any problems.
The functions are designed to be used in scripts and packages.
Author: Joe Thorley [aut, cre]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between checkr versions 0.0.2 dated 2018-01-29 and 0.1.0 dated 2018-03-02
DESCRIPTION | 22 +++++----- MD5 | 88 +++++++++++++++++++++++++---------------- NAMESPACE | 3 + NEWS.md | 15 ++++++ R/data.R | 4 - R/function.R | 4 - R/join.R | 25 ++++++++--- R/length.R | 6 +- R/list.R | 26 ++++++++---- R/n.R | 15 +++++- R/named.R | 16 +++++-- R/nchar.R |only R/ncol.R | 10 +--- R/nlevels.R | 6 +- R/nrow.R | 10 +--- R/number.R |only R/regex.R |only R/utils.R | 15 ++++-- R/vector.R | 41 +++++++++++-------- README.md | 72 ++++++++++++++++++++++++++++----- build |only inst |only man/check_data.Rd | 7 +-- man/check_function.Rd | 3 - man/check_join.Rd | 6 ++ man/check_length.Rd | 5 -- man/check_list.Rd | 8 +-- man/check_named.Rd | 7 ++- man/check_nchar.Rd |only man/check_ncol.Rd | 7 +-- man/check_nlevels.Rd | 5 -- man/check_nrow.Rd | 7 +-- man/check_number.Rd |only man/check_regex.Rd |only man/check_vector.Rd | 9 +--- tests/testthat/test-count.R | 2 tests/testthat/test-date.R | 2 tests/testthat/test-datetime.R | 2 tests/testthat/test-join.R | 17 ++++++- tests/testthat/test-list.R |only tests/testthat/test-named.R | 7 ++- tests/testthat/test-nchar.R |only tests/testthat/test-ncol.R | 4 - tests/testthat/test-nrow.R | 4 - tests/testthat/test-number.R |only tests/testthat/test-regex.R |only tests/testthat/test-string.R | 4 - tests/testthat/test-vector.R |only vignettes |only 49 files changed, 318 insertions(+), 166 deletions(-)
Title: bartMachine JARs
Description: These are bartMachine's Java dependency libraries. Note: this package has no functionality of its own and should not be installed as a standalone package without bartMachine.
Author: Adam Kapelner and Justin Bleich (R package), see COPYRIGHTS file for the authors of the java libraries
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between bartMachineJARs versions 1.0 dated 2016-02-27 and 1.1 dated 2018-03-02
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- NAMESPACE | 2 +- R/onLoad.R | 6 +++--- inst/COPYRIGHTS |only java/README | 20 ++++++++++---------- 6 files changed, 24 insertions(+), 23 deletions(-)
More information about bartMachineJARs at CRAN
Permanent link
Title: Bayesian Additive Regression Trees
Description: An advanced implementation of Bayesian Additive Regression Trees with expanded features for data analysis and visualization.
Author: Adam Kapelner and Justin Bleich (R package)
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between bartMachine versions 1.2.3 dated 2016-05-12 and 1.2.4 dated 2018-03-02
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- R/bartMachine.R | 5 ++--- R/bart_package_builders.R | 17 ++++++++++++----- R/bart_package_predicts.R | 2 +- R/zzz.R | 10 ++++++++++ build/vignette.rds |binary inst/doc/bartMachine.pdf |binary inst/java/bart_java.jar |binary java/bartMachine/bartMachine_a_base.java | 2 +- man/bartMachineCV.Rd | 6 +++--- 11 files changed, 44 insertions(+), 28 deletions(-)
Title: Greedy Experimental Design Construction
Description: Computes experimental designs for a
two-arm experiment with covariates by greedily optimizing a
balance objective function. This optimization provides lower
variance for the treatment effect estimator (and higher power)
while preserving a design that is close to complete randomization.
We return all iterations of the designs for use in a permutation test.
Author: Adam Kapelner, David Azriel and Abba M. Krieger
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between GreedyExperimentalDesign versions 1.0 dated 2016-12-08 and 1.1 dated 2018-03-02
CHANGELOG | 4 DESCRIPTION | 14 MD5 | 94 + R/GreedyExperimentalDesign.R | 22 R/complete_randomization.R | 26 R/greedy_search.R | 660 +++++++------- R/karp_search.R | 236 ++--- R/randomization_metrics.R | 74 - R/rerandomization_search.R | 16 R/shared.R | 168 +-- R/zzz.R | 23 build/vignette.rds |binary inst/CITATION | 28 inst/doc/100.pdf |only inst/doc/100order.pdf |only inst/doc/200.pdf |only inst/doc/GreedyExperimentalDesign.Rnw | 408 ++++---- inst/doc/GreedyExperimentalDesign.pdf |binary inst/doc/plot_ged.pdf |only inst/java/GreedyExperimentalDesign.jar |binary java/README | 2 man/GreedyExperimentalDesign.Rd | 7 man/complete_randomization.Rd | 1 man/compute_objective_val.Rd | 1 man/compute_randomization_metrics.Rd | 1 man/generate_stdzied_design_matrix.Rd | 1 man/initGreedyExperimentalDesignObject.Rd | 1 man/initKarpExperimentalDesignObject.Rd | 1 man/initOptimalExperimentalDesignObject.Rd | 1 man/initRerandomizationExperimentalDesignObject.Rd | 1 man/plot.greedy_experimental_design_search.Rd | 1 man/plot_obj_val_by_iter.Rd | 1 man/plot_obj_val_order_statistic.Rd | 1 man/print.greedy_experimental_design_search.Rd | 1 man/print.karp_experimental_design_search.Rd | 1 man/print.optimal_experimental_design_search.Rd | 1 man/print.rerandomization_experimental_design_search.Rd | 1 man/resultsGreedySearch.Rd | 1 man/resultsKarpSearch.Rd | 1 man/resultsOptimalSearch.Rd | 1 man/resultsRerandomizationSearch.Rd | 5 man/searchTimeElapsed.Rd | 1 man/startSearch.Rd | 1 man/stopSearch.Rd | 1 man/summary.greedy_experimental_design_search.Rd | 1 man/summary.karp_experimental_design_search.Rd | 1 man/summary.optimal_experimental_design_search.Rd | 1 man/summary.rerandomization_experimental_design_search.Rd | 1 vignettes/GreedyExperimentalDesign.Rnw | 408 ++++---- vignettes/refs.bib | 336 +++---- 50 files changed, 1273 insertions(+), 1283 deletions(-)
More information about GreedyExperimentalDesign at CRAN
Permanent link
Title: Implement Material Design in Shiny Applications
Description: Allows shiny developers to incorporate UI elements based on Google's Material design. See <https://material.io/guidelines/> for more information.
Author: Eric Anderson [aut, cre],
Alvin Wang [ctb, cph] (Materialize CSS library),
Alan Chang [ctb, cph] (Materialize CSS library),
Alex Mark [ctb, cph] (Materialize CSS library),
Kevin Louie [ctb, cph] (Materialize CSS library)
Maintainer: Eric Anderson <eric.ray.anderson@gmail.com>
Diff between shinymaterial versions 0.5.1 dated 2018-01-13 and 0.5.2 dated 2018-03-02
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/shiny-material-side-nav-tab-content.R | 2 +- R/shiny-material-side-nav-tabs.R | 15 ++++++++++----- inst/doc/shinymaterial.pdf |binary inst/js/shiny-material-side-nav-tabs.js | 4 +--- 6 files changed, 20 insertions(+), 17 deletions(-)
Title: Managing Animal Movement Data with 'PostGIS' and R
Description: Integrates R and the 'PostgreSQL/PostGIS' database
system to build and manage animal trajectory (movement) data sets.
The package relies on 'ltraj' objects from the R package 'adehabitatLT',
building the analogous 'pgtraj' data structure in 'PostGIS'. Functions
allow users to seamlessly transfer between 'ltraj' and 'pgtraj', as
well as build new 'pgtraj' directly from location data stored in the
database.
Author: Balázs Dukai [aut, cre] (Package creator during Google Summer of Code
2016 and 2017),
Mathieu Basille [aut],
David Bucklin [aut],
Clément Calenge [ctb]
Maintainer: Balázs Dukai <balazs.dukai@gmail.com>
Diff between rpostgisLT versions 0.5.0 dated 2017-06-20 and 0.6.0 dated 2018-03-02
rpostgisLT-0.5.0/rpostgisLT/NEWS |only rpostgisLT-0.5.0/rpostgisLT/R/as_pgtraj.R |only rpostgisLT-0.5.0/rpostgisLT/R/pgtrajDrop.R |only rpostgisLT-0.5.0/rpostgisLT/R/pgtrajSchema.R |only rpostgisLT-0.5.0/rpostgisLT/R/pgtrajVacuum.R |only rpostgisLT-0.5.0/rpostgisLT/man/as_pgtraj.Rd |only rpostgisLT-0.5.0/rpostgisLT/vignettes/fig/UC1.di |only rpostgisLT-0.5.0/rpostgisLT/vignettes/fig/UC1.notation |only rpostgisLT-0.5.0/rpostgisLT/vignettes/fig/UC1.png |only rpostgisLT-0.5.0/rpostgisLT/vignettes/fig/UC1.uml |only rpostgisLT-0.6.0/rpostgisLT/DESCRIPTION | 28 rpostgisLT-0.6.0/rpostgisLT/MD5 | 143 rpostgisLT-0.6.0/rpostgisLT/NAMESPACE | 33 rpostgisLT-0.6.0/rpostgisLT/NEWS.md |only rpostgisLT-0.6.0/rpostgisLT/R/asPgtraj.R |only rpostgisLT-0.6.0/rpostgisLT/R/createShinyViews.R |only rpostgisLT-0.6.0/rpostgisLT/R/data.R | 162 rpostgisLT-0.6.0/rpostgisLT/R/explorePgtraj.R |only rpostgisLT-0.6.0/rpostgisLT/R/ltraj2pgtraj.R | 498 - rpostgisLT-0.6.0/rpostgisLT/R/pgTrajDrop.R |only rpostgisLT-0.6.0/rpostgisLT/R/pgTrajSchema.R |only rpostgisLT-0.6.0/rpostgisLT/R/pgTrajVacuum.R |only rpostgisLT-0.6.0/rpostgisLT/R/pgtraj2ltraj.R | 254 rpostgisLT-0.6.0/rpostgisLT/R/rpostgisLT-package.R | 44 rpostgisLT-0.6.0/rpostgisLT/R/utils-shiny.R |only rpostgisLT-0.6.0/rpostgisLT/R/utils.R | 2779 +++++----- rpostgisLT-0.6.0/rpostgisLT/README.md | 310 - rpostgisLT-0.6.0/rpostgisLT/build/vignette.rds |binary rpostgisLT-0.6.0/rpostgisLT/inst/CITATION | 26 rpostgisLT-0.6.0/rpostgisLT/inst/doc/data-model.R | 30 rpostgisLT-0.6.0/rpostgisLT/inst/doc/data-model.Rmd | 364 - rpostgisLT-0.6.0/rpostgisLT/inst/doc/data-model.html | 884 +-- rpostgisLT-0.6.0/rpostgisLT/inst/doc/explorePgtraj.R |only rpostgisLT-0.6.0/rpostgisLT/inst/doc/explorePgtraj.Rmd |only rpostgisLT-0.6.0/rpostgisLT/inst/doc/explorePgtraj.html |only rpostgisLT-0.6.0/rpostgisLT/inst/doc/use-cases.R | 276 rpostgisLT-0.6.0/rpostgisLT/inst/doc/use-cases.Rmd | 598 +- rpostgisLT-0.6.0/rpostgisLT/inst/doc/use-cases.html | 548 - rpostgisLT-0.6.0/rpostgisLT/inst/examples.R |only rpostgisLT-0.6.0/rpostgisLT/inst/extdata |only rpostgisLT-0.6.0/rpostgisLT/inst/shinyapp |only rpostgisLT-0.6.0/rpostgisLT/inst/sql/insert_ltraj.sql | 256 rpostgisLT-0.6.0/rpostgisLT/inst/sql/traj_schema.sql | 456 - rpostgisLT-0.6.0/rpostgisLT/man/asPgtraj.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/createShinyBurstsView.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/createShinyStepsView.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/createShinyViews.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/dbBuildTableQuery.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/dbConnCheck.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/dbExistsTable.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/dbTableNameFix.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/dbVersion.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/explorePgtraj.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/findGeoType.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/getAnimalsDf.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/getBurstGeom.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/getBurstsDF.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/getFullTraj.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/getInfolocsColumns.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/getLayers.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/getPgtrajWithInfo.Rd | 44 rpostgisLT-0.6.0/rpostgisLT/man/getStepWindow.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/getTrajDefaults.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/isRaster.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/isVector.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/is_blank.Rd | 42 rpostgisLT-0.6.0/rpostgisLT/man/ld_opt.Rd | 74 rpostgisLT-0.6.0/rpostgisLT/man/ltraj2pgtraj.Rd | 112 rpostgisLT-0.6.0/rpostgisLT/man/pgTrajDB2TempT.Rd | 124 rpostgisLT-0.6.0/rpostgisLT/man/pgTrajTempT.Rd | 61 rpostgisLT-0.6.0/rpostgisLT/man/pgTrajViewParams.Rd | 78 rpostgisLT-0.6.0/rpostgisLT/man/pgTrajViewStepGeom.Rd | 52 rpostgisLT-0.6.0/rpostgisLT/man/pgtraj2ltraj.Rd | 64 rpostgisLT-0.6.0/rpostgisLT/man/pgtrajDrop.Rd | 74 rpostgisLT-0.6.0/rpostgisLT/man/pgtrajSchema.Rd | 88 rpostgisLT-0.6.0/rpostgisLT/man/pgtrajVacuum.Rd | 84 rpostgisLT-0.6.0/rpostgisLT/man/roe_gps_data.Rd | 178 rpostgisLT-0.6.0/rpostgisLT/man/rpostgisLT.Rd | 50 rpostgisLT-0.6.0/rpostgisLT/man/setTimeInput.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/test_input.Rd | 76 rpostgisLT-0.6.0/rpostgisLT/man/trajSummaryViews.Rd | 40 rpostgisLT-0.6.0/rpostgisLT/man/updateNumericTimeInput.Rd |only rpostgisLT-0.6.0/rpostgisLT/man/writeInfoFromDB.Rd | 70 rpostgisLT-0.6.0/rpostgisLT/man/writeInfoFromLtraj.Rd | 54 rpostgisLT-0.6.0/rpostgisLT/tests |only rpostgisLT-0.6.0/rpostgisLT/vignettes/data-model.Rmd | 364 - rpostgisLT-0.6.0/rpostgisLT/vignettes/explorePgtraj.Rmd |only rpostgisLT-0.6.0/rpostgisLT/vignettes/fig/explorePgtraj.png |only rpostgisLT-0.6.0/rpostgisLT/vignettes/fig/explorePgtraj_ui.png |only rpostgisLT-0.6.0/rpostgisLT/vignettes/use-cases.Rmd | 598 +- 90 files changed, 5177 insertions(+), 4839 deletions(-)
Title: Open Source OCR Engine
Description: Bindings to 'Tesseract' <https://opensource.google.com/projects/tesseract>:
a powerful optical character recognition (OCR) engine that supports over 100 languages.
The engine is highly configurable in order to tune the detection algorithms and
obtain the best possible results.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-02899>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between tesseract versions 1.9 dated 2018-02-15 and 2.0 dated 2018-03-02
DESCRIPTION | 24 ++++--- MD5 | 31 +++++---- NAMESPACE | 1 NEWS | 9 ++ R/RcppExports.R | 28 +++++++- R/ocr.R |only R/tessdata.R | 25 ++++--- R/tesseract.R | 178 +++++++++++++++++++++++----------------------------- build |only inst/WORDLIST |only inst/doc |only man/ocr.Rd |only man/tessdata.Rd | 20 ++++- man/tesseract.Rd | 89 ++++++++------------------ src/Makevars.win | 12 ++- src/RcppExports.cpp | 85 +++++++++++++++++++++++- src/tesseract.cpp | 142 +++++++++++++++++++++++++++++++++++++---- tests |only vignettes |only 19 files changed, 423 insertions(+), 221 deletions(-)
Title: Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment,
Peak Based Processing, Quantitative Analysis and Visualizations
Description: Makes Nuclear Magnetic Resonance spectroscopy (NMR spectroscopy) data analysis as easy as possible by only requiring a small set of functions to perform an entire analysis. 'speaq' offers the possibility of raw spectra alignment and quantitation but also an analysis based on features whereby the spectra are converted to peaks which are then grouped and turned into features. These features can be processed with any number of statistical tools either included in 'speaq' or available elsewhere on CRAN. More detail can be found in Vu et al. (2011) <doi:10.1186/1471-2105-12-405> and Beirnaert et al. (2018) <doi:10.1371/journal.pcbi.1006018>.
Author: Charlie Beirnaert, Trung Nghia Vu, Pieter Meysman, Kris Laukens and Dirk Valkenborg
Maintainer: Charlie Beirnaert <charlie_beirnaert@icloud.com>
Diff between speaq versions 2.1.0 dated 2017-09-19 and 2.2.0 dated 2018-03-02
DESCRIPTION | 10 - MD5 | 96 +++++++------- NEWS.md | 12 + R/AddPlottingStuff.R | 4 R/BuildFeatureMatrix.R | 14 +- R/BuildRawDataMatrix.R | 6 R/HMDBsearchR.R | 2 R/PeakGrouper.R | 54 +------- R/ROIplot.R | 9 - R/SCANT.R | 4 R/SilhouetR.R | 2 R/detectSpecPeaks.R | 2 R/dohCluster.R | 22 ++- R/drawBW.R | 8 - R/drawSpec.R | 12 - R/drawSpecPPM.R | 4 R/findShiftStepFFT.R | 2 R/getWaveletPeaks.R | 14 +- R/hClustAlign.R | 54 ++++++-- R/hclust.grouping.R | 4 R/makeSimulatedData.R | 4 R/regroupR.R | 4 R/relevant.features.p.R | 60 ++++++-- R/returnLocalMaxima.R | 2 build/vignette.rds |binary inst/doc/classic_speaq_vignette.html | 8 - inst/doc/speaq2_illustrations.R | 219 ++++++++++++++++---------------- inst/doc/speaq2_illustrations.Rmd | 219 ++++++++++++++++---------------- inst/doc/speaq2_illustrations.html | 236 +++++++++++++++++------------------ man/BuildFeatureMatrix.Rd | 10 - man/BuildRawDataMatrix.Rd | 6 man/HMDBsearchR.Rd | 2 man/PeakGrouper.Rd | 6 man/ROIplot.Rd | 4 man/SCANT.Rd | 4 man/SilhouetR.Rd | 2 man/detectSpecPeaks.Rd | 2 man/drawBW.Rd | 8 - man/drawSpec.Rd | 12 - man/drawSpecPPM.Rd | 4 man/findShiftStepFFT.Rd | 2 man/getWaveletPeaks.Rd | 9 - man/hClustAlign.Rd | 2 man/hclust.grouping.Rd | 4 man/makeSimulatedData.Rd | 4 man/regroupR.Rd | 4 man/relevant.features.p.Rd | 25 ++- man/returnLocalMaxima.Rd | 2 vignettes/speaq2_illustrations.Rmd | 219 ++++++++++++++++---------------- 49 files changed, 743 insertions(+), 675 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 4.3.20.1 dated 2018-02-14 and 4.4.0 dated 2018-03-02
RcppParallel-4.3.20.1/RcppParallel/src/Makevars |only RcppParallel-4.3.20.1/RcppParallel/src/init.c |only RcppParallel-4.3.20.1/RcppParallel/src/tbb/build/vs2010 |only RcppParallel-4.3.20.1/RcppParallel/src/tbb/build/xbox360.cl.inc |only RcppParallel-4.3.20.1/RcppParallel/src/tbb/build/xbox360.inc |only RcppParallel-4.3.20.1/RcppParallel/src/tbb/include/tbb/machine/xbox360_ppc.h |only RcppParallel-4.3.20.1/RcppParallel/src/tbb/src/perf/cpq_throughput_test.cpp |only RcppParallel-4.3.20.1/RcppParallel/src/tbb/src/tbb/tools_api/internal |only RcppParallel-4.3.20.1/RcppParallel/src/tbb/src/tbb/tools_api/prototype |only RcppParallel-4.3.20.1/RcppParallel/src/tbb/src/tbb/xbox360-tbb-export.def |only RcppParallel-4.3.20.1/RcppParallel/src/tbb/src/tbbmalloc/xbox360-tbbmalloc-export.def |only RcppParallel-4.3.20.1/RcppParallel/src/tbb/src/test |only RcppParallel-4.4.0/RcppParallel/DESCRIPTION | 18 RcppParallel-4.4.0/RcppParallel/MD5 | 1083 +-- RcppParallel-4.4.0/RcppParallel/NAMESPACE | 3 RcppParallel-4.4.0/RcppParallel/R/hooks.R | 7 RcppParallel-4.4.0/RcppParallel/R/options.R | 6 RcppParallel-4.4.0/RcppParallel/R/skeleton.R |only RcppParallel-4.4.0/RcppParallel/cleanup |only RcppParallel-4.4.0/RcppParallel/cleanup.win |only RcppParallel-4.4.0/RcppParallel/configure |only RcppParallel-4.4.0/RcppParallel/configure.win |only RcppParallel-4.4.0/RcppParallel/inst/NEWS | 12 RcppParallel-4.4.0/RcppParallel/inst/include/RcppParallel/RMatrix.h | 7 RcppParallel-4.4.0/RcppParallel/inst/include/index.html |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/aggregator.h | 52 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/aligned_space.h | 34 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/atomic.h | 42 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/blocked_range.h | 34 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/blocked_range2d.h | 34 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/blocked_range3d.h | 34 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/cache_aligned_allocator.h | 36 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/combinable.h | 63 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/compat/condition_variable | 51 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/compat/ppl.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/compat/thread | 52 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/compat/tuple | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/concurrent_hash_map.h | 161 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/concurrent_lru_cache.h | 36 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/concurrent_priority_queue.h | 85 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/concurrent_queue.h | 78 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/concurrent_unordered_map.h | 111 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/concurrent_unordered_set.h | 113 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/concurrent_vector.h | 152 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/critical_section.h | 38 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/enumerable_thread_specific.h | 487 + RcppParallel-4.4.0/RcppParallel/inst/include/tbb/flow_graph.h | 2608 +++++--- RcppParallel-4.4.0/RcppParallel/inst/include/tbb/flow_graph_abstractions.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/flow_graph_opencl_node.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/gfx_factory.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/global_control.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/index.html | 2 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_aggregator_impl.h | 60 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_concurrent_queue_impl.h | 64 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_concurrent_unordered_impl.h | 369 - RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_async_msg_impl.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_body_impl.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_cache_impl.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_impl.h | 452 - RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_indexer_impl.h | 153 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_item_buffer_impl.h | 85 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_join_impl.h | 1242 ++-- RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_node_impl.h | 572 + RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_streaming_node.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_tagged_buffer_impl.h | 168 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_trace_impl.h | 167 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_flow_graph_types_impl.h | 288 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_mutex_padding.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_range_iterator.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_tbb_hash_compare_impl.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_tbb_strings.h | 36 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_tbb_trace_impl.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_tbb_windef.h | 34 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_template_helpers.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_x86_eliding_mutex_impl.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/internal/_x86_rtm_rw_mutex_impl.h | 34 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/gcc_armv7.h | 40 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/gcc_generic.h | 101 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/gcc_ia32_common.h | 50 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/gcc_itsx.h | 38 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/ibm_aix51.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/icc_generic.h | 38 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/linux_common.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/linux_ia32.h | 38 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/linux_ia64.h | 56 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/linux_intel64.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/mac_ppc.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/macos_common.h | 42 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/mic_common.h | 36 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/msvc_armv7.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/msvc_ia32_common.h | 230 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/sunos_sparc.h | 34 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/windows_api.h | 42 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/windows_ia32.h | 83 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/machine/windows_intel64.h | 75 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/memory_pool.h | 60 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/mutex.h | 47 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/null_mutex.h | 52 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/null_rw_mutex.h | 50 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/parallel_do.h | 287 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/parallel_for.h | 80 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/parallel_for_each.h | 98 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/parallel_invoke.h | 41 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/parallel_reduce.h | 84 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/parallel_scan.h | 88 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/parallel_sort.h | 125 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/parallel_while.h | 64 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/partitioner.h | 507 - RcppParallel-4.4.0/RcppParallel/inst/include/tbb/pipeline.h | 123 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/queuing_mutex.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/queuing_rw_mutex.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/reader_writer_lock.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/recursive_mutex.h | 46 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/runtime_loader.h | 32 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/scalable_allocator.h | 64 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/spin_mutex.h | 34 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/spin_rw_mutex.h | 44 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/task.h | 91 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/task_arena.h | 145 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/task_group.h | 39 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/task_scheduler_init.h | 90 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/task_scheduler_observer.h | 61 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/tbb.h | 41 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/tbb_allocator.h | 48 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/tbb_config.h | 514 + RcppParallel-4.4.0/RcppParallel/inst/include/tbb/tbb_disable_exceptions.h |only RcppParallel-4.4.0/RcppParallel/inst/include/tbb/tbb_exception.h | 78 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/tbb_machine.h | 75 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/tbb_profiling.h | 77 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/tbb_stddef.h | 197 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/tbb_thread.h | 102 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/tbbmalloc_proxy.h | 40 RcppParallel-4.4.0/RcppParallel/inst/include/tbb/tick_count.h | 36 RcppParallel-4.4.0/RcppParallel/inst/rstudio |only 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RcppParallel-4.4.0/RcppParallel/src/tbb/build/common.inc | 71 RcppParallel-4.4.0/RcppParallel/src/tbb/build/common_rules.inc | 45 RcppParallel-4.4.0/RcppParallel/src/tbb/build/detect.js | 349 - RcppParallel-4.4.0/RcppParallel/src/tbb/build/generate_tbbvars.bat | 135 RcppParallel-4.4.0/RcppParallel/src/tbb/build/generate_tbbvars.sh | 42 RcppParallel-4.4.0/RcppParallel/src/tbb/build/index.html | 142 RcppParallel-4.4.0/RcppParallel/src/tbb/build/ios.clang.inc |only RcppParallel-4.4.0/RcppParallel/src/tbb/build/ios.macos.inc |only RcppParallel-4.4.0/RcppParallel/src/tbb/build/linux.clang.inc | 49 RcppParallel-4.4.0/RcppParallel/src/tbb/build/linux.gcc.inc | 68 RcppParallel-4.4.0/RcppParallel/src/tbb/build/linux.icc.inc | 57 RcppParallel-4.4.0/RcppParallel/src/tbb/build/linux.inc | 54 RcppParallel-4.4.0/RcppParallel/src/tbb/build/linux.pathcc.inc |only RcppParallel-4.4.0/RcppParallel/src/tbb/build/linux.xl.inc | 32 RcppParallel-4.4.0/RcppParallel/src/tbb/build/macos.clang.inc | 58 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RcppParallel-4.4.0/RcppParallel/src/tbb/build/version_info_windows.js | 79 RcppParallel-4.4.0/RcppParallel/src/tbb/build/vs2013 |only RcppParallel-4.4.0/RcppParallel/src/tbb/build/windows.cl.inc | 79 RcppParallel-4.4.0/RcppParallel/src/tbb/build/windows.gcc.inc | 50 RcppParallel-4.4.0/RcppParallel/src/tbb/build/windows.icl.inc | 66 RcppParallel-4.4.0/RcppParallel/src/tbb/build/windows.inc | 36 RcppParallel-4.4.0/RcppParallel/src/tbb/include/index.html | 4 RcppParallel-4.4.0/RcppParallel/src/tbb/include/serial/tbb/parallel_for.h | 95 RcppParallel-4.4.0/RcppParallel/src/tbb/include/serial/tbb/tbb_annotate.h | 32 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/aggregator.h | 52 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/aligned_space.h | 38 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/atomic.h | 42 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/blocked_range.h | 43 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/blocked_range2d.h | 54 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RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/concurrent_unordered_set.h | 113 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/concurrent_vector.h | 163 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/critical_section.h | 38 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/enumerable_thread_specific.h | 487 + RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/flow_graph.h | 3026 ++++++---- RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/flow_graph_abstractions.h |only RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/flow_graph_opencl_node.h |only RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/gfx_factory.h |only RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/global_control.h |only RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/index.html | 2 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/internal/_aggregator_impl.h | 60 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/internal/_concurrent_queue_impl.h | 75 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RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/internal/_x86_rtm_rw_mutex_impl.h | 34 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/gcc_armv7.h | 40 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/gcc_generic.h | 101 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/gcc_ia32_common.h | 50 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/gcc_itsx.h | 38 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/ibm_aix51.h | 32 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/icc_generic.h | 38 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/linux_common.h | 32 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/linux_ia32.h | 38 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/linux_ia64.h | 56 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/linux_intel64.h | 32 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/mac_ppc.h | 32 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/macos_common.h | 42 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/mic_common.h | 36 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/msvc_armv7.h | 32 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/msvc_ia32_common.h | 230 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/sunos_sparc.h | 34 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/windows_api.h | 42 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/windows_ia32.h | 83 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/machine/windows_intel64.h | 75 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/memory_pool.h | 60 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/mutex.h | 47 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/null_mutex.h | 52 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/null_rw_mutex.h | 50 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/parallel_do.h | 287 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/parallel_for.h | 98 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/parallel_for_each.h | 98 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/parallel_invoke.h | 41 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/parallel_reduce.h | 220 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/parallel_scan.h | 156 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/parallel_sort.h | 125 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/parallel_while.h | 64 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/partitioner.h | 525 - RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/pipeline.h | 123 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/queuing_mutex.h | 45 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/queuing_rw_mutex.h | 45 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/reader_writer_lock.h | 32 RcppParallel-4.4.0/RcppParallel/src/tbb/include/tbb/recursive_mutex.h | 46 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Title: Econometric Tools for Performance and Risk Analysis
Description: Collection of econometric functions for
performance and risk analysis. This package aims to aid
practitioners and researchers in utilizing the latest
research in analysis of non-normal return streams. In
general, it is most tested on return (rather than
price) data on a regular scale, but most functions will
work with irregular return data as well, and increasing
numbers of functions will work with P&L or price data
where possible.
Author: Brian G. Peterson [cre, aut, cph],
Peter Carl [aut, cph],
Kris Boudt [ctb, cph],
Ross Bennett [ctb],
Joshua Ulrich [ctb],
Eric Zivot [ctb],
Dries Cornilly [ctb],
Eric Hung [ctb],
Matthieu Lestel [ctb],
Kyle Balkissoon [ctb],
Diethelm Wuertz [ctb]
Maintainer: Brian G. Peterson <brian@braverock.com>
Diff between PerformanceAnalytics versions 1.4.3541 dated 2014-09-16 and 1.5.2 dated 2018-03-02
PerformanceAnalytics-1.4.3541/PerformanceAnalytics/src/Makevars.win |only PerformanceAnalytics-1.4.3541/PerformanceAnalytics/src/momentF.f90 |only PerformanceAnalytics-1.5.2/PerformanceAnalytics/DESCRIPTION | 29 PerformanceAnalytics-1.5.2/PerformanceAnalytics/MD5 | 615 +-- PerformanceAnalytics-1.5.2/PerformanceAnalytics/NAMESPACE | 93 PerformanceAnalytics-1.5.2/PerformanceAnalytics/NEWS | 20 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/ActivePremium.R | 23 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/AdjustedSharpeRatio.R | 69 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/AppraisalRatio.R | 7 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/BernadoLedoitratio.R | 7 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/BurkeRatio.R | 7 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/CAPM.alpha.R | 4 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/CAPM.beta.R | 26 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/CAPM.dynamic.R | 8 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/CAPM.epsilon.R | 4 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/CAPM.jensenAlpha.R | 4 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/CAPM.utils.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/CalmarRatio.R | 8 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/CoMoments.R | 34 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/DRatio.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/DownsideDeviation.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/DownsideFrequency.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/DrawdownPeak.R | 91 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/Drawdowns.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/ES.R | 35 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/FamaBeta.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/Frequency.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/HerfindahlIndex.R | 2 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/HurstIndex.R | 9 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/InformationRatio.R | 4 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/Kappa.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/KellyRatio.R | 4 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/M2Sortino.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/MSquared.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/MSquaredExcess.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/MartinRatio.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/MeanAbsoluteDeviation.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/Modigliani.R | 2 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/MultivariateMoments.R | 1799 ++++++++- PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/NetSelectivity.R | 6 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/Omega.R | 9 PerformanceAnalytics-1.5.2/PerformanceAnalytics/R/OmegaExcessReturn.R | 6 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PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.CalendarReturns.Rd | 18 PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.CaptureRatios.Rd | 21 PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.Correlation.Rd | 16 PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.Distributions.Rd | 14 PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.DownsideRisk.Rd | 22 PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.DownsideRiskRatio.Rd | 16 PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.Drawdowns.Rd | 49 PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.DrawdownsRatio.Rd | 18 PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.HigherMoments.Rd | 18 PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.InformationRatio.Rd | 14 PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.MonthlyReturns.Rd | 12 PerformanceAnalytics-1.5.2/PerformanceAnalytics/man/table.ProbOutPerformance.Rd | 26 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More information about PerformanceAnalytics at CRAN
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Title: Sound Analysis and Synthesis
Description: Functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses.
Author: Jerome Sueur <sueur@mnhn.fr> [cre, au], Thierry Aubin [au],
Caroline Simonis [au], Laurent Lellouch [main ctrb],
Ethan C. Brown [ctrb], Marion Depraetere [ctrb],
Camille Desjonqueres [ctrb], Francois Fabianek [ctrb],
Amandine Gasc [ctrb], Eric Kasten [ctrb], Stefanie LaZerte [ctrb], Jonathan Lees [ctrb],
Jean Marchal [ctrb], Sandrine Pavoine [ctrb], David Pinaud [ctrb], Alicia Stotz [ctrb],
Luis J. Villanueva-Rivera [ctrb], Zev Ross [ctrb],
Carl G. Witthoft [ctrb], Hristo Zhivomirov [ctrb].
Maintainer: Jerome Sueur <sueur@mnhn.fr>
Diff between seewave versions 2.0.5 dated 2016-10-12 and 2.1.0 dated 2018-03-02
DESCRIPTION | 14 MD5 | 80 ++-- NAMESPACE | 1 NEWS | 25 + R/seewave.r | 744 ++++++++++++++++++++++++++--------------- build/vignette.rds |binary inst/CITATION | 2 inst/doc/seewave_IO.R | 61 +-- inst/doc/seewave_IO.pdf |binary inst/doc/seewave_IO.rnw | 20 - inst/doc/seewave_analysis.R | 2 inst/doc/seewave_analysis.pdf |binary inst/doc/seewave_analysis.rnw | 3 man/ACI.Rd | 2 man/TKEO.Rd | 6 man/acoustat.Rd | 3 man/bwfilter.Rd | 8 man/combfilter.Rd | 2 man/corenv.Rd | 3 man/dynspec.Rd | 12 man/dynspectro.Rd |only man/echo.Rd | 2 man/ffilter.Rd | 9 man/fir.Rd | 10 man/fma.Rd | 2 man/ifreq.Rd | 2 man/meanspec.Rd | 9 man/octaves.Rd | 2 man/oscilloST.Rd | 2 man/savewav.Rd | 6 man/seewave.internal.Rd | 1 man/seewave.package.Rd | 17 man/sox.Rd | 4 man/spec.Rd | 2 man/synth.Rd | 22 - man/synth2.Rd | 4 man/th.Rd | 18 man/wav2flac.Rd | 4 man/wf.Rd | 2 src/seewave_init.c |only vignettes/seewave_IO.rnw | 20 - vignettes/seewave_analysis.rnw | 3 42 files changed, 700 insertions(+), 429 deletions(-)
Title: Download Data from the European Social Survey on the Fly
Description: Download data from the European Social Survey directly from their website <http://www.europeansocialsurvey.org/>. There are two family of functions that allow you to download and interactively check all countries and rounds available.
Author: Jorge Cimentada [aut, cre]
Maintainer: Jorge Cimentada <cimentadaj@gmail.com>
Diff between ess versions 0.0.1 dated 2017-11-07 and 0.1.1 dated 2018-03-02
ess-0.0.1/ess/R/download_rounds_stata.R |only ess-0.0.1/ess/R/show_countries.R |only ess-0.0.1/ess/R/show_country_rounds.R |only ess-0.0.1/ess/R/show_rounds.R |only ess-0.0.1/ess/inst/doc/ess_r_stata_users.R |only ess-0.0.1/ess/inst/doc/ess_r_stata_users.Rmd |only ess-0.0.1/ess/inst/doc/ess_r_stata_users.html |only ess-0.0.1/ess/tests/testthat/tests-download_rounds_stata.R |only ess-0.0.1/ess/vignettes/ess_r_stata_users.Rmd |only ess-0.1.1/ess/DESCRIPTION | 17 + ess-0.1.1/ess/LICENSE | 4 ess-0.1.1/ess/MD5 | 66 +++--- ess-0.1.1/ess/NAMESPACE | 6 ess-0.1.1/ess/NEWS.md |only ess-0.1.1/ess/R/download_format.R |only ess-0.1.1/ess/R/ess_all_cntrounds.R | 33 ++- ess-0.1.1/ess/R/ess_all_rounds.R | 33 ++- ess-0.1.1/ess/R/ess_country.R | 108 ++++++++--- ess-0.1.1/ess/R/ess_country_url.R | 71 ++++++- ess-0.1.1/ess/R/ess_round_url.R | 43 ++-- ess-0.1.1/ess/R/ess_rounds.R | 71 ++++--- ess-0.1.1/ess/R/recode_missings.R |only ess-0.1.1/ess/R/show_any_rounds.R |only ess-0.1.1/ess/R/show_funs.R |only ess-0.1.1/ess/README.md | 61 ++++-- ess-0.1.1/ess/build/vignette.rds |binary ess-0.1.1/ess/inst/doc/intro_ess.R |only ess-0.1.1/ess/inst/doc/intro_ess.Rmd |only ess-0.1.1/ess/inst/doc/intro_ess.html |only ess-0.1.1/ess/man/ess_all_cntrounds.Rd | 25 ++ ess-0.1.1/ess/man/ess_all_rounds.Rd | 26 ++ ess-0.1.1/ess/man/ess_country.Rd | 37 ++- ess-0.1.1/ess/man/ess_rounds.Rd | 33 +++ ess-0.1.1/ess/man/recode_missings.Rd |only ess-0.1.1/ess/man/show_countries.Rd | 7 ess-0.1.1/ess/man/show_country_rounds.Rd | 6 ess-0.1.1/ess/man/show_rounds.Rd | 6 ess-0.1.1/ess/man/show_rounds_country.Rd |only ess-0.1.1/ess/man/show_theme_rounds.Rd |only ess-0.1.1/ess/man/show_themes.Rd |only ess-0.1.1/ess/tests/testthat/test-country.R | 52 +++-- ess-0.1.1/ess/tests/testthat/test-recode_missings.R |only ess-0.1.1/ess/tests/testthat/test-rounds.R | 55 +++-- ess-0.1.1/ess/tests/testthat/test-show_.R | 123 ++++++++++++- ess-0.1.1/ess/tests/testthat/tests-download_format.R |only ess-0.1.1/ess/vignettes/intro_ess.Rmd |only 46 files changed, 651 insertions(+), 232 deletions(-)
Title: R Database Interface
Description: A database interface definition for communication
between R and relational database management systems. All
classes in this package are virtual and need to be extended by
the various R/DBMS implementations.
Author: R Special Interest Group on Databases (R-SIG-DB) [aut],
Hadley Wickham [aut],
Kirill Müller [aut, cre]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between DBI versions 0.7 dated 2017-06-18 and 0.8 dated 2018-03-02
DBI-0.7/DBI/R/util.R |only DBI-0.7/DBI/man/Table.Rd |only DBI-0.7/DBI/man/print.list.pairs.Rd |only DBI-0.8/DBI/DESCRIPTION | 24 DBI-0.8/DBI/MD5 | 140 - DBI-0.8/DBI/NAMESPACE | 15 DBI-0.8/DBI/NEWS.md | 55 DBI-0.8/DBI/R/DBConnection.R | 159 + DBI-0.8/DBI/R/DBDriver.R | 29 DBI-0.8/DBI/R/DBObject.R | 8 DBI-0.8/DBI/R/DBResult.R | 32 DBI-0.8/DBI/R/data-types.R | 25 DBI-0.8/DBI/R/data.R | 2 DBI-0.8/DBI/R/deprecated.R | 41 DBI-0.8/DBI/R/interpolate.R | 115 - DBI-0.8/DBI/R/list-pairs.R |only DBI-0.8/DBI/R/quote.R | 255 ++ DBI-0.8/DBI/R/rd.R |only DBI-0.8/DBI/R/table-create.R | 2 DBI-0.8/DBI/R/table-insert.R | 2 DBI-0.8/DBI/R/table.R | 32 DBI-0.8/DBI/R/transactions.R | 29 DBI-0.8/DBI/README.md | 6 DBI-0.8/DBI/build/DBI.pdf |only DBI-0.8/DBI/build/vignette.rds |binary DBI-0.8/DBI/inst/doc/DBI-1.html | 20 DBI-0.8/DBI/inst/doc/DBI-proposal.html | 76 DBI-0.8/DBI/inst/doc/backend.html | 22 DBI-0.8/DBI/inst/doc/spec.html | 2560 -------------------------- DBI-0.8/DBI/man/DBI-package.Rd | 4 DBI-0.8/DBI/man/DBIConnection-class.Rd | 11 DBI-0.8/DBI/man/DBIDriver-class.Rd | 2 DBI-0.8/DBI/man/DBIObject-class.Rd | 1 DBI-0.8/DBI/man/DBIResult-class.Rd | 6 DBI-0.8/DBI/man/Id.Rd |only DBI-0.8/DBI/man/SQL.Rd | 4 DBI-0.8/DBI/man/dbBind.Rd | 12 DBI-0.8/DBI/man/dbClearResult.Rd | 7 DBI-0.8/DBI/man/dbColumnInfo.Rd | 5 DBI-0.8/DBI/man/dbConnect.Rd | 3 DBI-0.8/DBI/man/dbDataType.Rd | 13 DBI-0.8/DBI/man/dbDisconnect.Rd | 15 DBI-0.8/DBI/man/dbDriver.Rd | 1 DBI-0.8/DBI/man/dbExecute.Rd | 12 DBI-0.8/DBI/man/dbExistsTable.Rd | 11 DBI-0.8/DBI/man/dbFetch.Rd | 34 DBI-0.8/DBI/man/dbGetException.Rd | 12 DBI-0.8/DBI/man/dbGetInfo.Rd | 18 DBI-0.8/DBI/man/dbGetQuery.Rd | 11 DBI-0.8/DBI/man/dbGetRowCount.Rd | 7 DBI-0.8/DBI/man/dbGetRowsAffected.Rd | 7 DBI-0.8/DBI/man/dbGetStatement.Rd | 7 DBI-0.8/DBI/man/dbHasCompleted.Rd | 7 DBI-0.8/DBI/man/dbIsValid.Rd | 19 DBI-0.8/DBI/man/dbListConnections.Rd | 6 DBI-0.8/DBI/man/dbListFields.Rd | 9 DBI-0.8/DBI/man/dbListObjects.Rd |only DBI-0.8/DBI/man/dbListResults.Rd | 13 DBI-0.8/DBI/man/dbListTables.Rd | 14 DBI-0.8/DBI/man/dbQuoteIdentifier.Rd | 15 DBI-0.8/DBI/man/dbQuoteLiteral.Rd |only DBI-0.8/DBI/man/dbQuoteString.Rd | 9 DBI-0.8/DBI/man/dbReadTable.Rd | 11 DBI-0.8/DBI/man/dbRemoveTable.Rd | 11 DBI-0.8/DBI/man/dbSendQuery.Rd | 9 DBI-0.8/DBI/man/dbSendStatement.Rd | 11 DBI-0.8/DBI/man/dbUnquoteIdentifier.Rd |only DBI-0.8/DBI/man/dbWithTransaction.Rd | 2 DBI-0.8/DBI/man/dbWriteTable.Rd | 17 DBI-0.8/DBI/man/hidden_aliases.Rd | 57 DBI-0.8/DBI/man/make.db.names.Rd | 1 DBI-0.8/DBI/man/sqlAppendTable.Rd | 1 DBI-0.8/DBI/man/transactions.Rd | 11 DBI-0.8/DBI/tests/testthat/test-data-type.R | 11 DBI-0.8/DBI/tests/testthat/test-interpolate.R | 35 DBI-0.8/DBI/tests/testthat/test-quote.R | 15 76 files changed, 1158 insertions(+), 2978 deletions(-)
Title: Analysis of Concept Maps and Concept Landscapes
Description: Provides methods for the import/export and automated analysis of concept maps and concept landscapes (sets of concept maps).
Author: Andreas Muehling
Maintainer: Andreas Muehling <andreas.muehling@tum.de>
Diff between comato versions 1.0 dated 2014-03-18 and 1.1 dated 2018-03-02
comato-1.0/comato/man/comato-package.Rd |only comato-1.1/comato/DESCRIPTION | 16 +- comato-1.1/comato/MD5 | 101 ++++++------- comato-1.1/comato/NAMESPACE | 7 comato-1.1/comato/R/clustering.r | 1 comato-1.1/comato/R/pathfinder.r | 26 ++- comato-1.1/comato/R/plot.r | 3 comato-1.1/comato/man/Hopkins.index.Rd | 18 -- comato-1.1/comato/man/MBM.cluster.Rd | 32 +--- comato-1.1/comato/man/PAM.cluster.Rd | 32 +--- comato-1.1/comato/man/analyze.graph.measures.Rd | 11 - comato-1.1/comato/man/analyze.graph.measures.conceptmap.Rd | 17 -- comato-1.1/comato/man/analyze.graph.measures.igraph.Rd | 17 -- comato-1.1/comato/man/analyze.similarity.Rd | 21 +- comato-1.1/comato/man/analyze.subgraphs.Rd | 19 -- comato-1.1/comato/man/as.matrix.conceptmap.Rd | 17 -- comato-1.1/comato/man/as.matrix.conceptmaps.Rd | 20 +- comato-1.1/comato/man/clustering.Rd | 26 +-- comato-1.1/comato/man/concept.vector.Rd | 13 - comato-1.1/comato/man/conceptmap.Rd | 14 - comato-1.1/comato/man/conceptmap.default.Rd | 12 - comato-1.1/comato/man/conceptmap.igraph.Rd | 16 -- comato-1.1/comato/man/conceptmap.matrix.Rd | 20 +- comato-1.1/comato/man/conceptmaps.Rd | 14 - comato-1.1/comato/man/conceptmaps.default.Rd | 13 - comato-1.1/comato/man/conceptmaps.list.Rd | 14 - comato-1.1/comato/man/conceptmaps.matrix.Rd | 22 +- comato-1.1/comato/man/edge.vector.Rd | 14 - comato-1.1/comato/man/get.unified.concepts.Rd | 12 - comato-1.1/comato/man/landscape.Rd | 65 ++------ comato-1.1/comato/man/merge.conceptmaps.Rd | 17 +- comato-1.1/comato/man/modify.concepts.Rd | 16 -- comato-1.1/comato/man/modify.concepts.conceptmap.Rd | 24 +-- comato-1.1/comato/man/modify.concepts.conceptmaps.Rd | 29 +-- comato-1.1/comato/man/pathfinder.Rd | 18 +- comato-1.1/comato/man/pathfinder.conceptmaps.Rd | 52 ++---- comato-1.1/comato/man/pathfinder.igraph.Rd | 41 ++--- comato-1.1/comato/man/pathfinder.matrix.Rd | 28 +-- comato-1.1/comato/man/plot.conceptmap.Rd | 34 +--- comato-1.1/comato/man/plot.conceptmaps.Rd | 37 +--- comato-1.1/comato/man/print.conceptmap.Rd | 10 - comato-1.1/comato/man/print.conceptmaps.Rd | 10 - comato-1.1/comato/man/read.folder.tgf.Rd | 16 -- comato-1.1/comato/man/read.folder.yEd.Rd | 17 -- comato-1.1/comato/man/read.tgf.Rd | 12 - comato-1.1/comato/man/read.yEd.Rd | 12 - comato-1.1/comato/man/splice.Rd | 20 +- comato-1.1/comato/man/summary.conceptmap.Rd | 13 - comato-1.1/comato/man/summary.conceptmaps.Rd | 15 - comato-1.1/comato/man/unify.concepts.Rd | 22 +- comato-1.1/comato/man/write.tgf.Rd | 22 +- comato-1.1/comato/man/write.tgf.folder.Rd | 18 -- 52 files changed, 466 insertions(+), 630 deletions(-)
Title: The Moving Epidemic Method
Description: The Moving Epidemic Method, created by T Vega and JE Lozano (2012, 2015) <doi:10.1111/j.1750-2659.2012.00422.x>, <doi:10.1111/irv.12330>, allows the weekly assessment of the epidemic and intensity status to help in routine respiratory infections surveillance in health systems. Allows the comparison of different epidemic indicators, timing and shape with past epidemics and across different regions or countries with different surveillance systems. Also, it gives a measure of the performance of the method in terms of sensitivity and specificity of the alert week.
Author: Jose E. Lozano [aut, cre]
Maintainer: Jose E. Lozano <lozalojo@gmail.com>
Diff between mem versions 2.11 dated 2017-10-23 and 2.12 dated 2018-03-02
DESCRIPTION | 11 MD5 | 14 - NAMESPACE | 17 + R/memmodel.R | 489 ++++++++++++++++++++-------------------- R/transformseries.R | 13 - R/transformseries.twowaves.R | 227 +++++++++++++++--- man/transformseries.Rd | 4 man/transformseries.twowaves.Rd | 3 8 files changed, 474 insertions(+), 304 deletions(-)
Title: Interactive Editing of Spatial Data in R
Description: Suite of interactive functions and helpers for selecting and editing
geospatial data.
Author: Tim Appelhans [aut, cre],
Kenton Russell [aut]
Maintainer: Tim Appelhans <tim.appelhans@gmail.com>
Diff between mapedit versions 0.3.2 dated 2017-07-15 and 0.4.1 dated 2018-03-02
DESCRIPTION | 8 LICENSE | 4 MD5 | 65 ++- NAMESPACE | 41 +- NEWS |only NEWS.md | 167 +++++----- R/draw.R |only R/edit.R | 515 +++++++++++++++++-------------- R/edit_map_return_sf.R | 174 +++++----- R/mapedit.R | 40 +- R/merge.R | 270 ++++++++-------- R/modules.R | 527 ++++++++++++++++---------------- R/playback.R | 452 +++++++++++++-------------- R/query.R | 295 +++++++++-------- R/select.R | 199 +++++++----- README.md | 134 ++++---- inst/examples/examples_edit.R | 36 +- inst/examples/examples_select.R | 138 ++++---- inst/examples/shiny_modules.R | 148 ++++---- inst/posts/2017-01-22_interactivity.Rmd | 448 +++++++++++++-------------- inst/posts/2017-05-10_edit_sf.Rmd | 66 ++-- man/drawFeatures.Rd |only man/editFeatures.Rd | 237 +++++++------- man/editMap.Rd | 163 +++++---- man/editMod.Rd | 64 ++- man/editModUI.Rd | 38 +- man/mapedit-package.Rd | 90 ++--- man/merge_add.Rd | 44 +- man/merge_delete.Rd | 54 +-- man/merge_edit.Rd | 54 +-- man/playback.Rd | 30 - man/selectFeatures.Rd | 238 ++++++++------ man/selectMap.Rd | 217 +++++++------ man/selectMod.Rd | 58 +-- man/selectModUI.Rd | 38 +- 35 files changed, 2670 insertions(+), 2382 deletions(-)
Title: Tools for Linear Dimension Reduction
Description: Linear dimension reduction subspaces can be uniquely defined using orthogonal projection matrices. This package provides tools to compute distances between such subspaces and to compute the average subspace. For details see Liski, E.Nordhausen K., Oja H., Ruiz-Gazen A. (2016) Combining Linear Dimension Reduction Subspaces <doi:10.1007/978-81-322-3643-6_7>.
Author: Eero Liski [aut],
Klaus Nordhausen [aut, cre],
Hannu Oja [aut],
Anne Ruiz-Gazen [aut]
Maintainer: Klaus Nordhausen <klaus.nordhausen@tuwien.ac.at>
Diff between LDRTools versions 0.2 dated 2015-09-24 and 0.2-1 dated 2018-03-02
DESCRIPTION | 19 +++++++++++-------- MD5 | 11 ++++++----- build |only inst/ChangeLog.txt | 5 +++++ man/AOP.Rd | 3 +-- man/LDRTools-package.Rd | 14 +++++++------- man/Pdist.Rd | 3 +-- 7 files changed, 31 insertions(+), 24 deletions(-)
Title: Blind Source Separation Methods Based on Joint Diagonalization
and Some BSS Performance Criteria
Description: Cardoso's JADE algorithm as well as his functions for joint diagonalization are ported to R. Also several other blind source separation (BSS) methods, like AMUSE and SOBI, and some criteria for performance evaluation of BSS algorithms, are given. The package is described in Miettinen, Nordhausen and Taskinen (2017) <doi:10.18637/jss.v076.i02>.
Author: Klaus Nordhausen, Jean-Francois Cardoso, Jari Miettinen, Hannu Oja, Esa Ollila, Sara Taskinen
Maintainer: Klaus Nordhausen <klaus.nordhausen@tuwien.ac.at>
Diff between JADE versions 2.0-0 dated 2017-01-09 and 2.0-1 dated 2018-03-02
DESCRIPTION | 12 MD5 | 20 build/partial.rdb |only build/vignette.rds |binary inst/ChangeLog | 6 inst/doc/JADE-BSSasymp.Rnw | 2607 ++++++++++++++++++++---------------------- inst/doc/JADE-BSSasymp.pdf |binary man/CPPdata.Rd | 4 man/JADE-package.Rd | 62 src/init.c |only vignettes/JADE-BSSasymp.Rnw | 2607 ++++++++++++++++++++---------------------- vignettes/JADE-references.bib | 11 12 files changed, 2661 insertions(+), 2668 deletions(-)
Title: Data Visualization Tools for Statistical Analysis Results
Description: Unified plotting tools for statistics commonly used, such as GLM,
time series, PCA families, clustering and survival analysis. The package offers
a single plotting interface for these analysis results and plots in a unified
style using 'ggplot2'.
Author: Masaaki Horikoshi [aut],
Yuan Tang [aut, cre],
Austin Dickey [ctb],
Matthias Grenié [ctb],
Ryan Thompson [ctb],
Luciano Selzer [ctb],
Dario Strbenac [ctb],
Kirill Voronin [ctb]
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
Diff between ggfortify versions 0.4.2 dated 2018-02-11 and 0.4.3 dated 2018-03-02
ggfortify-0.4.2/ggfortify/inst/doc/intro_Chinese.R |only ggfortify-0.4.2/ggfortify/inst/doc/intro_Chinese.Rmd |only ggfortify-0.4.2/ggfortify/inst/doc/intro_Chinese.html |only ggfortify-0.4.2/ggfortify/vignettes/intro_Chinese.Rmd |only ggfortify-0.4.3/ggfortify/DESCRIPTION | 8 +-- ggfortify-0.4.3/ggfortify/MD5 | 38 ++++++--------- ggfortify-0.4.3/ggfortify/NEWS | 8 ++- ggfortify-0.4.3/ggfortify/R/fortify_glmnet.R | 6 +- ggfortify-0.4.3/ggfortify/R/fortify_stats_density.R | 2 ggfortify-0.4.3/ggfortify/R/fortify_stats_lm.R | 4 + ggfortify-0.4.3/ggfortify/R/fortify_surv.R | 2 ggfortify-0.4.3/ggfortify/build/vignette.rds |binary ggfortify-0.4.3/ggfortify/inst/doc/basics.html | 12 ++-- ggfortify-0.4.3/ggfortify/inst/doc/plot_dist.html | 10 +-- ggfortify-0.4.3/ggfortify/inst/doc/plot_lm.html | 4 - ggfortify-0.4.3/ggfortify/inst/doc/plot_pca.html | 28 +++++------ ggfortify-0.4.3/ggfortify/inst/doc/plot_surv.html | 8 +-- ggfortify-0.4.3/ggfortify/inst/doc/plot_ts.html | 22 ++++---- ggfortify-0.4.3/ggfortify/man/autoplot.cv.glmnet.Rd | 2 ggfortify-0.4.3/ggfortify/tests/testthat/test-forecast.R | 5 + ggfortify-0.4.3/ggfortify/tests/testthat/test-stats-lm.R | 13 +++++ ggfortify-0.4.3/ggfortify/tests/testthat/test-surv.R | 3 + 22 files changed, 100 insertions(+), 75 deletions(-)
Title: Download, Manipulate, and Present American Community Survey and
Decennial Data from the US Census
Description: Provides a general toolkit for downloading, managing,
analyzing, and presenting data from the U.S. Census
(<https://www.census.gov/data/developers/data-sets.html>), including
SF1 (Decennial short-form), SF3 (Decennial long-form), and the
American Community Survey (ACS). Confidence intervals provided with
ACS data are converted to standard errors to be bundled with
estimates in complex acs objects. Package provides new methods to
conduct standard operations on acs objects and present/plot data in
statistically appropriate ways.
Author: Ezra Haber Glenn [aut, cre]
Maintainer: Ezra Haber Glenn <eglenn@mit.edu>
Diff between acs versions 2.1.2 dated 2017-10-10 and 2.1.3 dated 2018-03-02
DESCRIPTION | 8 +++---- MD5 | 30 ++++++++++++++--------------- R/acs.R | 3 ++ README.md | 38 +++++++++++++++++++++++++------------ data/cpi.rda |binary data/fips.american.indian.area.rda |binary data/fips.county.rda |binary data/fips.county.subdivision.rda |binary data/fips.place.rda |binary data/fips.school.rda |binary data/fips.state.rda |binary data/kansas07.rda |binary data/kansas09.rda |binary data/lawrence10.rda |binary man/acs-package.Rd | 2 - man/acs.lookup.Rd | 15 ++++++++++++-- 16 files changed, 62 insertions(+), 34 deletions(-)
Title: Entropy Based Method for the Detection of Significant Variation
in Gene Expression Data
Description: An implementation of a method based on information theory devised
for the identification of genes showing a significant variation of expression
across multiple conditions. Given expression estimates from any number of
RNA-Seq samples and conditions it identifies genes or transcripts with a
significant variation of expression across all the conditions studied,
together with the samples in which they are over- or under-expressed.
Zambelli et al. (2018) <doi:10.1093/nar/gky055>.
Author: Federico Zambelli [cre] (<https://orcid.org/0000-0003-3487-4331>),
Giulio Pavesi [aut] (<https://orcid.org/0000-0001-5705-6249>)
Maintainer: Federico Zambelli <federico.zambelli@unimi.it>
Diff between RNentropy versions 1.1.2 dated 2018-02-12 and 1.2.0 dated 2018-03-02
DESCRIPTION | 8 +- MD5 | 28 +++---- R/RN_calc_LPV.R | 5 - R/RNentropy-internal.R | 145 ++++++++++++++++++++------------------- build/partial.rdb |binary data/RN_BarresLab_FPKM.rda |binary data/RN_BarresLab_design.rda |binary data/RN_Brain_Example_design.rda |binary data/RN_Brain_Example_tpm.rda |binary man/RN_calc.Rd | 3 man/RN_calc_LPV.Rd | 35 +++++---- man/RN_pmi.Rd | 3 man/RN_select.Rd | 3 man/RNentropy-package.Rd | 12 +-- man/RNentropy.Rd | 4 - 15 files changed, 132 insertions(+), 114 deletions(-)
Title: Test and Item Analysis via Shiny
Description: Interactive shiny application for analysis of educational tests and
their items.
Author: Patricia Martinkova [aut, cre],
Adela Drabinova [aut],
Ondrej Leder [aut],
Jakub Houdek [aut],
Lubomir Stepanek [ctb]
Maintainer: Patricia Martinkova <martinkova@cs.cas.cz>
Diff between ShinyItemAnalysis versions 1.2.3 dated 2017-08-22 and 1.2.6 dated 2018-03-02
ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/www/adela_new.png |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/DESCRIPTION | 18 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/MD5 | 99 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/NAMESPACE | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/NEWS | 78 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/R/DDplot.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/R/DistractorAnalysis.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/R/dataMedical.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/R/dataMedicalkey.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/R/dataMedicaltest.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/R/gDisrim.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/R/plotDIFLogistic.R | 21 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/R/plotDIFirt.R | 18 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/R/plotDistractorAnalysis.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/R/startShinyItemAnalysis.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/README.md | 4 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/CITATION | 21 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/DDplot.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/DIF.R | 18 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/DistractorAnalysis.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/IRT.R | 203 + ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/Regression.R | 47 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ReportUI.R |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/Summary.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/TraditionalAnalysis.R | 3 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/Validity.R | 22 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/counter.Rdata |binary ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/gDisrim.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/hexbin_html.png |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/hexbin_pdf.png |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/latex |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/plotDIFLogistic.R | 24 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/plotDIFirt.R | 140 - ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/plotDistractorAnalysis.R | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/reportHTMLnew.Rmd |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/reportPDFnew.Rmd |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/reporthtml.Rmd | 320 ++ ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/reportpdf.Rmd | 414 ++- ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/reportpdfold.Rmd |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/server.R | 282 +- ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/shiny.sty |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/startShinyItemAnalysis.R | 33 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/titlepage.png |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/titlepage.sty |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui.R | 1233 ++++++---- ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/www/Thumbs.db |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/www/adela.jpg |only ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/man/DDplot.Rd | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/man/DistractorAnalysis.Rd | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/man/dataMedical.Rd | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/man/dataMedicalkey.Rd | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/man/dataMedicaltest.Rd | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/man/gDiscrim.Rd | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/man/plotDIFLogistic.Rd | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/man/plotDIFirt.Rd | 10 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/man/plotDistractorAnalysis.Rd | 2 ShinyItemAnalysis-1.2.6/ShinyItemAnalysis/man/startShinyItemAnalysis.Rd | 2 57 files changed, 2170 insertions(+), 884 deletions(-)
More information about ShinyItemAnalysis at CRAN
Permanent link
Title: The Moving Epidemic Method Web Application
Description: Web application created in the Shiny framework for the 'mem' R package.
Author: Jose E. Lozano [aut, cre]
Maintainer: Jose E. Lozano <lozalojo@gmail.com>
Diff between memapp versions 2.7 dated 2018-01-23 and 2.8 dated 2018-03-02
DESCRIPTION | 8 - MD5 | 10 - README.md | 1 inst/shinyapp/helpers.R | 12 +- inst/shinyapp/lang/translation.bin |binary inst/shinyapp/server.R | 201 ++++++++++++++++++++++--------------- 6 files changed, 139 insertions(+), 93 deletions(-)
Title: Computing Weighted Topological Overlaps (wTO) & Consensus wTO
Network
Description: Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks (Nowick et al. (2009) <doi:10.1073/pnas.0911376106>) given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks.
Author: Deisy Morselli Gysi, Andre Voigt, Tiago Miranda Fragoso, Eivind Almaas and Katja Nowick.
Maintainer: Deisy Morselli Gysi <deisy@bioinf.uni-leipzig.de>
Diff between wTO versions 1.4.2 dated 2018-02-01 and 1.5 dated 2018-03-02
DESCRIPTION | 6 +- MD5 | 12 +++-- NAMESPACE | 2 R/wTO.Complete2.R | 119 +++++++++++++++++++++++++-------------------------- R/wTO.Consensus.R | 37 +++++++++------ R/wTO.export.R |only man/wTO.Consensus.Rd | 26 ++++++----- man/wTO.export.Rd |only 8 files changed, 110 insertions(+), 92 deletions(-)
Title: Plotting Methods for 'simmer'
Description: A set of plotting methods for 'simmer' trajectories and simulations.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>),
Bart Smeets [aut, cph]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between simmer.plot versions 0.1.12 dated 2017-12-21 and 0.1.13 dated 2018-03-02
simmer.plot-0.1.12/simmer.plot/man/simmer.plot.Rd |only simmer.plot-0.1.13/simmer.plot/DESCRIPTION | 10 +++--- simmer.plot-0.1.13/simmer.plot/LICENSE | 2 - simmer.plot-0.1.13/simmer.plot/MD5 | 18 +++++------ simmer.plot-0.1.13/simmer.plot/NEWS.md | 6 +++ simmer.plot-0.1.13/simmer.plot/R/plot.trajectory.R | 6 +-- simmer.plot-0.1.13/simmer.plot/R/simmer.plot.R | 2 - simmer.plot-0.1.13/simmer.plot/build/vignette.rds |binary simmer.plot-0.1.13/simmer.plot/inst/doc/plot.simmer.html | 12 +++---- simmer.plot-0.1.13/simmer.plot/inst/doc/plot.trajectory.html | 4 +- simmer.plot-0.1.13/simmer.plot/man/simmer.plot-package.Rd |only 11 files changed, 33 insertions(+), 27 deletions(-)
Title: High Performance Algorithms for Vine Copula Modeling
Description: Provides an interface to 'vinecopulib', a C++ library for vine
copula modeling based on 'Boost' and 'Eigen'. The 'rvinecopulib'
package implements the core features of the popular 'VineCopula' package, in
particular inference algorithms for both vine copula and bivariate copula
models. Advantages over 'VineCopula' are a sleeker and more modern API,
improved performances, especially in high dimensions, nonparametric and
multi-parameter families. The 'rvinecopulib' package includes 'vinecopulib' as
header-only C++ library (currently version 0.2.7). Thus
users do not need to install 'vinecopulib' itself in order to use
'rvinecopulib'. Since their initial releases, 'vinecopulib' is licensed under
the MIT License, and 'rvinecopulib' is licensed under the GNU GPL version 3.
Author: Thomas Nagler [aut, cre],
Thibault Vatter [aut]
Maintainer: Thomas Nagler <info@vinecopulib.org>
Diff between rvinecopulib versions 0.2.6.1.1 dated 2018-02-25 and 0.2.7.1.0 dated 2018-03-02
DESCRIPTION | 8 ++-- MD5 | 20 +++++----- NEWS.md | 16 ++++++++ R/rvinecopulib.R | 2 - R/vinecop.R | 4 +- inst/include/vinecopulib/bicop/implementation/tll.ipp | 5 +- inst/include/vinecopulib/misc/implementation/tools_stats.ipp | 2 - inst/include/vinecopulib/vinecop/implementation/fit_controls.ipp | 6 ++- inst/include/vinecopulib/vinecop/implementation/tools_select.ipp | 2 + man/rvinecopulib.Rd | 2 - man/vinecop.Rd | 4 +- 11 files changed, 46 insertions(+), 25 deletions(-)
Title: HTTP and WebSocket Server Library
Description: Provides low-level socket and protocol support for handling
HTTP and WebSocket requests directly from within R. It is primarily
intended as a building block for other packages, rather than making it
particularly easy to create complete web applications using httpuv alone.
httpuv is built on top of the libuv and http-parser C libraries, both of
which were developed by Joyent, Inc. (See LICENSE file for libuv and
http-parser license information.)
Author: Joe Cheng, Hector Corrada Bravo [ctb], Jeroen Ooms [ctb],
Winston Chang [ctb]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between httpuv versions 1.3.6.1 dated 2018-02-28 and 1.3.6.2 dated 2018-03-02
DESCRIPTION | 13 ++++--------- MD5 | 2 +- 2 files changed, 5 insertions(+), 10 deletions(-)
Title: Composite Likelihood Inference for Spatial Ordinal Data with
Replications
Description: Composite likelihood parameter estimate and asymptotic covariance matrix are calculated for the spatial ordinal data with replications, where spatial ordinal response with covariate and both spatial exponential covariance within subject and independent and identically distributed measurement error. Parameter estimation can be performed by either solving the gradient function or maximizing composite log-likelihood. Parametric bootstrapping is used to estimate the Godambe information matrix and hence the asymptotic standard error and covariance matrix with parallel processing option.
Author: Ting Fung (Ralph) Ma [cre, aut],
Pingping Wang [aut],
Jun Zhu [aut],
Dipankar Bandyopadhyay [ctb],
Yincai Tang [ctb]
Maintainer: Ting Fung (Ralph) Ma <tingfung.ma@wisc.edu>
Diff between clordr versions 1.0.2 dated 2018-02-06 and 1.2.0 dated 2018-03-02
DESCRIPTION | 13 ++-- MD5 | 14 ++--- NAMESPACE | 10 +++ R/cl.R | 10 +-- R/cle.rord.R | 155 ++++++++++++++++++++++++++++++++++++++++++-------------- R/sim_data.R | 10 +-- man/cle.rord.Rd | 55 +++++++++++++------ man/sim.rord.Rd | 10 +-- 8 files changed, 193 insertions(+), 84 deletions(-)
Title: Nowcast Analysis and Create Real-Time Data Basis
Description: Methods and tools to estimate 'forecasts' of Brazilian macroeconomic variables in the near future or the recent past, i.e. 'nowcast'. It allows: extract information in real time, creating a real time data base; estimate relationship between macroeconomic variables via dynamic factors; forecast time series in previous periods of reference; forecast time series in the current period of reference (nowcasting); recreate a data base simulating the information available in the past for evaluating forecasting models accuracy (pseudo real-time data base); access information available in a specific date in the past (real-time data base), for some variables.
Author: Daiane Marcolino de Mattos [aut, cre],
Guilherme Branco Gomes [aut],
Pedro Costa Ferreira [aut]
Maintainer: Daiane Marcolino de Mattos <daiane.mattos@fgv.br>
Diff between nowcasting versions 0.1.1 dated 2017-11-06 and 0.1.2 dated 2018-03-02
nowcasting-0.1.1/nowcasting/build |only nowcasting-0.1.1/nowcasting/inst |only nowcasting-0.1.1/nowcasting/vignettes |only nowcasting-0.1.2/nowcasting/DESCRIPTION | 21 ++++++++++----------- nowcasting-0.1.2/nowcasting/MD5 | 7 +------ 5 files changed, 11 insertions(+), 17 deletions(-)
Title: Create American Psychological Association (APA) Style Tables
Description: A common task faced by researchers is the creation of APA style
(i.e., American Psychological Association style) tables from statistical
output. In R a large number of function calls are often needed to obtain all of
the desired information for a single APA style table. As well, the process of
manually creating APA style tables in a word processor is prone to transcription
errors. This package creates Word files (.doc files) containing APA style tables
for several types of analyses. Using this package minimizes transcription errors
and reduces the number commands needed by the user.
Author: David Stanley [aut, cre]
Maintainer: David Stanley <dstanley@uoguelph.ca>
Diff between apaTables versions 1.5.1 dated 2017-06-20 and 2.0.2 dated 2018-03-02
apaTables-1.5.1/apaTables/R/apaANOVAFTable.R |only apaTables-2.0.2/apaTables/DESCRIPTION | 12 apaTables-2.0.2/apaTables/MD5 | 80 ++--- apaTables-2.0.2/apaTables/NAMESPACE | 2 apaTables-2.0.2/apaTables/NEWS.md |only apaTables-2.0.2/apaTables/R/apaANOVATable1way.R | 83 ++++- apaTables-2.0.2/apaTables/R/apaANOVATable2way.R | 26 + apaTables-2.0.2/apaTables/R/apaAOVTable.R |only apaTables-2.0.2/apaTables/R/apaCorrelationTable.R | 15 apaTables-2.0.2/apaTables/R/apaDvalueTable.R | 36 +- apaTables-2.0.2/apaTables/R/apaEZANOVA.R |only apaTables-2.0.2/apaTables/R/apaRegressionBootTable.R |only apaTables-2.0.2/apaTables/R/apaRegressionTable.R | 121 ++++++- apaTables-2.0.2/apaTables/R/apaTables.R | 43 -- apaTables-2.0.2/apaTables/R/data-dating_wide.R |only apaTables-2.0.2/apaTables/R/data-drink_attitude_wide.R |only apaTables-2.0.2/apaTables/R/data-goggles.R | 1 apaTables-2.0.2/apaTables/R/deltaR2.R | 4 apaTables-2.0.2/apaTables/README.md | 160 ---------- apaTables-2.0.2/apaTables/build/vignette.rds |binary apaTables-2.0.2/apaTables/data/dating_wide.rda |only apaTables-2.0.2/apaTables/data/drink_attitude_wide.rda |only apaTables-2.0.2/apaTables/data/goggles.rda |binary apaTables-2.0.2/apaTables/inst/doc/apaTables.R | 150 ++++++++- apaTables-2.0.2/apaTables/inst/doc/apaTables.Rmd | 272 ++++++++++++++--- apaTables-2.0.2/apaTables/inst/doc/apaTables.html | 270 ++++++++++++++-- apaTables-2.0.2/apaTables/man/apa.aov.table.Rd | 14 apaTables-2.0.2/apaTables/man/apa.cor.table.Rd | 2 apaTables-2.0.2/apaTables/man/apa.d.table.Rd | 4 apaTables-2.0.2/apaTables/man/apa.ezANOVA.table.Rd |only apaTables-2.0.2/apaTables/man/apa.reg.boot.table.Rd |only apaTables-2.0.2/apaTables/man/apa.reg.table.Rd | 8 apaTables-2.0.2/apaTables/man/apaTables.Rd | 7 apaTables-2.0.2/apaTables/man/dating_wide.Rd |only apaTables-2.0.2/apaTables/man/drink_attitude_wide.Rd |only apaTables-2.0.2/apaTables/man/goggles.Rd | 1 apaTables-2.0.2/apaTables/vignettes/Table1.jpg |binary apaTables-2.0.2/apaTables/vignettes/Table10.jpg |binary apaTables-2.0.2/apaTables/vignettes/Table11.jpg |only apaTables-2.0.2/apaTables/vignettes/Table2.jpg |binary apaTables-2.0.2/apaTables/vignettes/Table3.jpg |binary apaTables-2.0.2/apaTables/vignettes/Table4.jpg |binary apaTables-2.0.2/apaTables/vignettes/Table5.jpg |binary apaTables-2.0.2/apaTables/vignettes/Table6.jpg |binary apaTables-2.0.2/apaTables/vignettes/Table7.jpg |binary apaTables-2.0.2/apaTables/vignettes/Table8.jpg |binary apaTables-2.0.2/apaTables/vignettes/Table9.jpg |binary apaTables-2.0.2/apaTables/vignettes/apaTables.Rmd | 272 ++++++++++++++--- 48 files changed, 1169 insertions(+), 414 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-29 1.1
2016-04-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-16 1.0.9
2017-04-30 1.0.8
2017-03-12 1.0.7
2017-01-23 1.0.6
2016-04-10 1.0.5
2016-03-29 1.0.2
2016-03-29 1.0.3
2016-03-27 1.0.1
2016-03-25 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-29 2.1
2015-12-14 2.0
2015-08-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-20 0.4
2017-06-07 0.3
2017-03-15 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-13 0.1.2
2017-04-16 0.1.1
2017-04-13 0.1.0
Title: Interact with BioUML Server
Description: Functions for connecting to BioUML server, querying BioUML repository and launching BioUML analyses.
Author: Ivan Yevshin [aut, cre],
Tagir Valeev [aut]
Maintainer: Ivan Yevshin <ivan@dote.ru>
Diff between rbiouml versions 1.7 dated 2015-09-24 and 1.8 dated 2018-03-02
ChangeLog | 2 ++ DESCRIPTION | 10 ++++------ MD5 | 10 +++++----- R/biouml.R | 2 +- build/vignette.rds |binary inst/doc/rbiouml.pdf |binary 6 files changed, 12 insertions(+), 12 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-26 0.20.6
2014-03-18 0.20.5
2014-03-09 0.20.2
2013-11-01 0.20
Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests.
Includes tools for stubbing 'HTTP' requests, including expected
request conditions and response conditions. Match on
'HTTP' method, query parameters, request body, headers and
more. Can be used for unit tests or outside of a testing
context.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between webmockr versions 0.1.0 dated 2017-05-20 and 0.2.0 dated 2018-03-02
DESCRIPTION | 21 +- LICENSE | 2 MD5 | 94 ++++++----- NAMESPACE | 12 + NEWS.md | 33 +++ R/RequestPattern.R | 64 +++++-- R/RequestRegistry.R | 2 R/RequestSignature.R | 30 +-- R/Response.R | 7 R/StubRegistry.R | 4 R/StubbedRequest.R | 45 +++++ R/adapter-crul.R | 182 +++++++++++++++------- R/defunct.R |only R/flipswitch.R | 8 R/onload.R | 8 R/request_registry.R |only R/stub_registry.R | 18 ++ R/stub_registry_clear.R | 10 - R/stub_request.R | 22 ++ R/to_raise.R |only R/to_return.R | 16 + R/to_timeout.R |only R/webmockr-opts.R | 93 +++++++---- R/webmockr.R | 3 R/wi_th.R | 17 ++ R/zzz.R | 28 +++ README.md | 289 +++++++++++++++++++++++++---------- man/HashCounter.Rd | 4 man/RequestRegistry.Rd | 4 man/RequestSignature.Rd | 18 +- man/StubRegistry.Rd | 4 man/StubbedRequest.Rd | 5 man/UriPattern.Rd | 7 man/build_crul_request.Rd |only man/build_crul_response.Rd |only man/request_registry.Rd |only man/stub_registry.Rd | 18 ++ man/stub_registry_clear.Rd | 9 - man/stub_request.Rd | 22 ++ man/to_raise.Rd |only man/to_return.Rd | 10 + man/to_timeout.Rd |only man/webmockr-defunct.Rd |only man/webmockr_configure.Rd | 47 +++-- man/webmockr_disable-defunct.Rd |only man/webmockr_enable-defunct.Rd |only man/wi_th.Rd | 7 tests/testthat/helper-webmockr.R |only tests/testthat/test-CrulAdapter.R | 11 - tests/testthat/test-Response.R | 2 tests/testthat/test-flipswitch.R | 2 tests/testthat/test-to_raise.R |only tests/testthat/test-to_return.R |only tests/testthat/test-to_return_body.R |only tests/testthat/test-to_timeout.R |only tests/testthat/test-wi_th.R | 15 + tests/testthat/test-zutils.R |only 57 files changed, 879 insertions(+), 314 deletions(-)
Title: Open Machine Learning and Open Data Platform
Description: We provide an R interface to 'OpenML.org' which is an online machine learning platform where researchers can access open data, download and upload data sets, share their machine learning tasks and experiments and organize them online to work and collaborate with other researchers.
The R interface allows to query for data sets with specific properties, and allows the downloading and uploading of data sets, tasks, flows and runs.
See <https://www.openml.org/guide/api> for more information.
Author: Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>,
Bernd Bischl <bernd_bischl@gmx.net>,
Dominik Kirchhoff <dom.kirchhoff@gmail.com>,
Michel Lang <michellang@gmail.com>,
Benjamin Hofner <benjamin.hofner@fau.de>,
Jakob Bossek <j.bossek@gmail.com>,
Pascal Kerschke <kerschke@uni-muenster.de>,
Joaquin Vanschoren <joaquin.vanschoren@gmail.com>
Maintainer: Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>
Diff between OpenML versions 1.7 dated 2017-10-17 and 1.8 dated 2018-03-02
DESCRIPTION | 10 - MD5 | 150 ++++++++++++++-------------- NAMESPACE | 1 NEWS | 36 +++--- R/OMLDataSetDescription_Class.R | 8 - R/OMLEstimationProcedure_Class.R | 6 - R/OMLFlow_Class.R | 26 ++-- R/OMLIOData_Class.R | 6 - R/OMLRunParList_Class.R | 12 +- R/OMLRunParameter_Class.R | 2 R/OMLRun_Class.R | 12 +- R/OMLSeedParList_Class.R | 2 R/OMLTask_Class.R | 18 +-- R/convertOMLDataSetToMlr.R | 2 R/convertOMLRunToBMR.R | 14 +- R/extractOMLStudyIds.R |only R/getOMLDataSet.R | 2 R/getOMLDataSetQualities.R | 2 R/getOMLRun.R | 18 +-- R/getOMLStudy.R | 28 ++--- R/getOMLTask.R | 35 +++--- R/helpers.R | 2 R/listOMLRunEvaluations.R | 2 R/listOMLSetup.R | 94 ++++++----------- R/listOMLTasks.R | 4 R/reformatPredictions.R | 6 - R/runTaskFlow.R | 9 - R/runTaskMlr.R | 28 ++--- R/tagOMLObject.R | 2 R/uploadOMLDataSet.R | 4 R/uploadOMLRun.R | 10 - R/writeOMLDataSetXML.R | 2 build/vignette.rds |binary inst/examples/clearOMLCache.R | 6 - inst/examples/convertOMLDataSetToMlr.R | 10 - inst/examples/convertOMLTaskToMlr.R | 10 - inst/examples/getCachedOMLDataSetStatus.R | 6 - inst/examples/getOMLDataSet.R | 16 +- inst/examples/getOMLDataSetQualities.R | 10 - inst/examples/getOMLFlow.R | 8 - inst/examples/getOMLRun.R | 10 - inst/examples/getOMLTask.R | 16 +- inst/examples/listOMLDataSetQualities.R | 6 - inst/examples/listOMLDataSets.R | 8 - inst/examples/listOMLEstimationProcedures.R | 6 - inst/examples/listOMLEvaluationMeasures.R | 6 - inst/examples/listOMLFlows.R | 8 - inst/examples/listOMLRunEvaluations.R | 18 +-- inst/examples/listOMLRuns.R | 8 - inst/examples/listOMLSetup.R | 6 - inst/examples/listOMLTaskTypes.R | 6 - inst/examples/listOMLTasks.R | 8 - inst/examples/loadOMLConfig.R | 10 - inst/examples/runTaskMlr.R | 18 +-- man/clearOMLCache.Rd | 6 - man/convertOMLDataSetToMlr.Rd | 10 - man/convertOMLTaskToMlr.Rd | 10 - man/extractOMLStudyIds.Rd |only man/getCachedOMLDataSetStatus.Rd | 6 - man/getOMLDataSet.Rd | 16 +- man/getOMLDataSetQualities.Rd | 10 - man/getOMLFlow.Rd | 8 - man/getOMLRun.Rd | 10 - man/getOMLTask.Rd | 16 +- man/listOMLDataSetQualities.Rd | 6 - man/listOMLDataSets.Rd | 8 - man/listOMLEstimationProcedures.Rd | 6 - man/listOMLEvaluationMeasures.Rd | 6 - man/listOMLFlows.Rd | 8 - man/listOMLRunEvaluations.Rd | 18 +-- man/listOMLRuns.Rd | 8 - man/listOMLSetup.Rd | 6 - man/listOMLTaskTypes.Rd | 6 - man/listOMLTasks.Rd | 8 - man/loadOMLConfig.Rd | 10 - man/runTaskFlow.Rd | 2 man/runTaskMlr.Rd | 20 +-- 77 files changed, 472 insertions(+), 485 deletions(-)
Title: Minimization Tool for Pharmacokinetic-Pharmacodynamic Data
Analysis
Description: This is a set of minimization tools (maximum likelihood estimation and least square fitting) to solve examples in the Johan Gabrielsson and Dan Weiner's book "Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications" 5th ed. (ISBN:9198299107). Examples include linear and nonlinear compartmental model, turn-over model, single or multiple dosing bolus/infusion/oral models, allometry, toxicokinetics, reversible metabolism, in-vitro/in-vivo extrapolation, enterohepatic circulation, metabolite modeling, Emax model, inhibitory model, tolerance model, oscillating response model, enantiomer interaction model, effect compartment model, drug-drug interaction model, receptor occupancy model, and rebound phenomena model.
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between wnl versions 0.3.2 dated 2017-11-30 and 0.3.3 dated 2018-03-02
DESCRIPTION | 6 +++--- MD5 | 18 ++++++++++-------- NAMESPACE | 2 +- R/Objs.R | 2 +- R/cmpChi.R |only R/nlr.R | 4 ++-- inst/NEWS.Rd | 7 +++++++ inst/doc/wnl-manual.pdf |binary man/cmpChi.Rd |only man/nlr.Rd | 2 +- man/wnl-package.Rd | 8 ++++---- 11 files changed, 29 insertions(+), 20 deletions(-)