Title: A Package for Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data, in
particular representation, manipulation and simulation of multistate
data - the Lexis suite of functions, which includes interfaces to
'mstate', 'etm' and 'cmprsk' packages.
Also contains functions for Age-Period-Cohort and Lee-Carter
modeling and a function for interval censored data and some useful
functions for tabulation and plotting, as well as a number of
epidemiological data sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.24 dated 2018-01-30 and 2.26 dated 2018-03-11
Epi-2.24/Epi/build |only Epi-2.24/Epi/inst/doc/flup.rnw |only Epi-2.24/Epi/inst/doc/simLexis.rnw |only Epi-2.24/Epi/inst/doc/yll.rnw |only Epi-2.26/Epi/CHANGES | 31 +++++- Epi-2.26/Epi/DESCRIPTION | 8 - Epi-2.26/Epi/MD5 | 77 ++++++++------- Epi-2.26/Epi/NAMESPACE | 9 + Epi-2.26/Epi/R/N2Y.r | 16 +-- Epi-2.26/Epi/R/Ns.r | 2 Epi-2.26/Epi/R/Relevel.R | 12 +- Epi-2.26/Epi/R/Wald.R | 4 Epi-2.26/Epi/R/bootLexis.R |only Epi-2.26/Epi/R/bsLexis.R |only Epi-2.26/Epi/R/ci.lin.R | 64 ++++++++++++ Epi-2.26/Epi/R/effx.r | 24 ++-- Epi-2.26/Epi/R/foreign.R | 42 +++----- Epi-2.26/Epi/R/lexis.R | 25 +++- Epi-2.26/Epi/data/BrCa.rda |only Epi-2.26/Epi/inst/doc/flup.R | 65 +++++------- Epi-2.26/Epi/inst/doc/flup.pdf |binary Epi-2.26/Epi/inst/doc/index.html | 13 +- Epi-2.26/Epi/inst/doc/simLexis.R | 102 ++++++++++---------- Epi-2.26/Epi/inst/doc/simLexis.pdf |binary Epi-2.26/Epi/inst/doc/yll.R | 29 ++--- Epi-2.26/Epi/inst/doc/yll.pdf |binary Epi-2.26/Epi/man/BrCa.Rd |only Epi-2.26/Epi/man/DMepi.Rd | 36 +++++++ Epi-2.26/Epi/man/N2Y.Rd | 23 +++- Epi-2.26/Epi/man/Relevel.Rd | 4 Epi-2.26/Epi/man/bootLexis.Rd |only Epi-2.26/Epi/man/ci.lin.Rd | 44 ++++++-- Epi-2.26/Epi/man/foreign.Lexis.Rd | 20 ++- Epi-2.26/Epi/vignettes/fixall |only Epi-2.26/Epi/vignettes/flup.pdf |only Epi-2.26/Epi/vignettes/flup.rnw | 150 +---------------------------- Epi-2.26/Epi/vignettes/flup.tex |only Epi-2.26/Epi/vignettes/kopi |only Epi-2.26/Epi/vignettes/pr.Rda |only Epi-2.26/Epi/vignettes/sL.pdf |binary Epi-2.26/Epi/vignettes/simLexis.pdf |only Epi-2.26/Epi/vignettes/simLexis.rnw | 171 +++------------------------------- Epi-2.26/Epi/vignettes/simLexis.tex |only Epi-2.26/Epi/vignettes/toparticle.tex |only Epi-2.26/Epi/vignettes/topreport.tex |only Epi-2.26/Epi/vignettes/useful.tex |only Epi-2.26/Epi/vignettes/yl.pdf |binary Epi-2.26/Epi/vignettes/yll.pdf |only Epi-2.26/Epi/vignettes/yll.rnw | 145 ++-------------------------- Epi-2.26/Epi/vignettes/yll.tex |only 50 files changed, 454 insertions(+), 662 deletions(-)
Title: Calculate Key DHS Indicators
Description: Calculates key indicators such as fertility rates (Total Fertility Rate (TFR), General Fertility Rate (GFR), and Age Specific Fertility Rate (ASFR)) using Demographic and Health Survey (DHS) women/individual data.
In addition to the indicators, the 'DHS.rates' package estimates precision indicators such as Standard Error (SE), Design Effect (DEFT), Relative Standard Error (RSE) and Confidence Interval (CI).
The package is developed according to the DHS methodology of calculating the fertility indicators outlined in the "DHS Guide to Statistics" (Rutstein and Rojas 2006,
<http://dhsprogram.com/pubs/pdf/DHSG1/Guide_to_DHS_Statistics_29Oct2012_DHSG1.pdf>)
and the DHS methodology of estimating the precision indicators outlined in the "DHS Sampling and Household Listing Manual" (ICF International 2012,
<https://dhsprogram.com/pubs/pdf/DHSM4/DHS6_Sampling_Manual_Sept2012_DHSM4.pdf>).
Author: Mahmoud Elkasabi
Maintainer: Mahmoud Elkasabi <mahmoud.elkasabi@icf.com>
Diff between DHS.rates versions 0.1.0 dated 2018-03-05 and 0.2.0 dated 2018-03-11
DESCRIPTION | 12 +++++++----- MD5 | 9 +++++++-- R/TFR.R | 4 ++-- build |only inst |only vignettes |only 6 files changed, 16 insertions(+), 9 deletions(-)
Title: Simplifies Plotting Data Inside Databases
Description: Leverages 'dplyr' to process the calculations of a plot inside a database.
This package provides helper functions that abstract the work at three levels:
outputs a 'ggplot', outputs the calculations, outputs the formula
needed to calculate bins.
Author: Edgar Ruiz [aut, cre]
Maintainer: Edgar Ruiz <edgar@rstudio.com>
Diff between dbplot versions 0.2.0 dated 2018-01-05 and 0.2.1 dated 2018-03-11
dbplot-0.2.0/dbplot/R/utils.R |only dbplot-0.2.0/dbplot/tools/readme/logo.png |only dbplot-0.2.0/dbplot/tools/readme/unnamed-chunk-15-1.png |only dbplot-0.2.0/dbplot/tools/readme/unnamed-chunk-18-1.png |only dbplot-0.2.0/dbplot/tools/readme/unnamed-chunk-3-1.png |only dbplot-0.2.1/dbplot/DESCRIPTION | 11 dbplot-0.2.1/dbplot/MD5 | 75 -- dbplot-0.2.1/dbplot/NAMESPACE | 32 dbplot-0.2.1/dbplot/NEWS.md | 38 - dbplot-0.2.1/dbplot/R/boxplot.R | 214 ++--- dbplot-0.2.1/dbplot/R/dbbin.R |only dbplot-0.2.1/dbplot/R/dbplot.R |only dbplot-0.2.1/dbplot/R/discrete.R | 292 +++---- dbplot-0.2.1/dbplot/R/histogram.R | 213 ++--- dbplot-0.2.1/dbplot/R/raster.R | 324 ++++---- dbplot-0.2.1/dbplot/README.md | 590 ++++++++-------- dbplot-0.2.1/dbplot/man/db_bin.Rd | 74 +- dbplot-0.2.1/dbplot/man/db_compute_bins.Rd | 78 +- dbplot-0.2.1/dbplot/man/db_compute_boxplot.Rd | 52 - dbplot-0.2.1/dbplot/man/db_compute_count.Rd | 66 - dbplot-0.2.1/dbplot/man/db_compute_raster.Rd | 109 +- dbplot-0.2.1/dbplot/man/dbplot_bar.Rd | 79 +- dbplot-0.2.1/dbplot/man/dbplot_boxplot.Rd | 60 - dbplot-0.2.1/dbplot/man/dbplot_histogram.Rd | 83 +- dbplot-0.2.1/dbplot/man/dbplot_line.Rd | 79 +- dbplot-0.2.1/dbplot/man/dbplot_raster.Rd | 121 +-- dbplot-0.2.1/dbplot/tests/testthat.R | 12 dbplot-0.2.1/dbplot/tests/testthat/test-dbbin.R | 42 - dbplot-0.2.1/dbplot/tests/testthat/test-dbplots.R | 40 - dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-10-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-11-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-12-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-13-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-14-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-16-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-19-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-4-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-5-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-6-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-7-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-8-1.png |binary dbplot-0.2.1/dbplot/tools/readme/unnamed-chunk-9-1.png |binary 42 files changed, 1362 insertions(+), 1322 deletions(-)
Title: Categorical Marginal Models
Description: Quite extensive package for maximum likelihood estimation and
weighted least squares estimation of categorical marginal models (CMMs;
e.g., Bergsma and Rudas, 2002, <http://www.jstor.org/stable/2700006?;
Bergsma, Croon and Hagenaars, 2009, <DOI:10.1007/b12532>.
Author: W. P. Bergsma [aut],
L. A. van der Ark [aut, cre]
Maintainer: L. A. van der Ark <L.A.vanderArk@uva.nl>
Diff between cmm versions 0.8 dated 2015-01-15 and 0.12 dated 2018-03-11
DESCRIPTION | 21 ++++++++++++++------- MD5 | 16 ++++++++-------- NAMESPACE | 3 +++ R/CMM.R | 10 +++++----- man/BodySatisfaction.Rd | 3 +-- man/GSS93.Rd | 4 +--- man/NES.Rd | 2 +- man/TestCronbachAlpha.Rd | 8 ++++---- man/cmm-package.Rd | 20 ++++++++------------ 9 files changed, 45 insertions(+), 42 deletions(-)
Title: Inferring Dominance Hierarchies and Estimating Uncertainty
Description: Provides: (1) Tools to infer dominance hierarchies based on calculating Elo scores, but with custom functions to improve estimates in animals with relatively stable dominance ranks. (2) Tools to plot the shape of the dominance hierarchy and estimate the uncertainty of a given data set.
Author: Damien R. Farine and Alfredo Sanchez-Tojar
Maintainer: Damien R. Farine <dfarine@orn.mpg.de>
Diff between aniDom versions 0.1.2 dated 2017-07-25 and 0.1.3 dated 2018-03-11
DESCRIPTION | 8 +- MD5 | 6 - R/elo_scores.R | 177 ++++++++++++++++++++++++-------------------------- man/aniDom-package.Rd | 4 - 4 files changed, 95 insertions(+), 100 deletions(-)
Title: Genetic Algorithm for Wind Farm Layout Optimization
Description: The genetic algorithm is designed to optimize small wind farms with
irregular shapes. The algorithm works with a fixed amount of turbines, a fixed
rotor radius and a mean wind speed value for every incoming wind direction.
If required, it can include a terrain effect model which downloads an
'SRTM' elevation model automatically and loads a Corine Land Cover raster,
which has to be downloaded previously. Further information can be found in the
description of the function 'windfarmGA'. To start an optimization run, either the
function 'windfarmGA' or 'genAlgo' can be used. The function 'windfarmGA' checks
the user inputs interactively and then runs the function 'genAlgo'. If the input
parameters are already known, an optimization can be run directly via the function
'genAlgo'. Their output is identical.
Author: Sebastian Gatscha
Maintainer: Sebastian Gatscha <sebastian_gatscha@gmx.at>
Diff between windfarmGA versions 1.1.1 dated 2017-07-27 and 1.2 dated 2018-03-11
DESCRIPTION | 41 ++++++------- MD5 | 52 ++++++++-------- NAMESPACE | 10 ++- R/GoogleChromePlot.R | 41 +++++++++---- R/GooglePlot.R | 7 ++ R/GridFilter.R | 3 R/HexaTex.R | 3 R/PlotWindfarmGA.R | 33 ++++++---- R/VekWincelCalc.R | 12 +-- R/calculateEn.R | 40 +++++------- R/crossover1.R | 4 - R/fitness.R | 129 ++++++++++++++++++++++++++++++++--------- R/genAlgo.R | 140 +++++++++++++++++++++++++++++++-------------- R/heatmapGA.R | 5 + R/leafPlot.R | 122 ++++++++++++++++++++++++--------------- R/mutation.R | 6 - R/plotEvolution.R | 6 + R/plotcloud.R | 1 R/plotfitnessevolution.R | 1 R/trimton.R | 8 +- R/windfarmGA.R | 60 ++++++++++++++++--- inst/extdata/a_weibull.RDS |only inst/extdata/k_weibull.RDS |only man/VekWinkelCalc.Rd | 2 man/fitness.Rd | 26 ++++++-- man/genAlgo.Rd | 28 +++++++-- man/leafPlot.Rd | 16 ++++- man/windfarmGA.Rd | 22 ++++++- 28 files changed, 562 insertions(+), 256 deletions(-)
Title: Connecting R and 'Raven' Sound Analysis Software
Description: A tool to exchange data between R and 'Raven' sound analysis software <http://www.birds.cornell.edu/brp/raven/RavenOverview.html> (Cornell Lab of Ornithology). Functions work on data formats compatible with the R package 'warbleR'.
Author: Marcelo Araya-Salas
Maintainer: Marcelo Araya-Salas <araya-salas@cornell.edu>
Diff between Rraven versions 1.0.1 dated 2018-02-11 and 1.0.2 dated 2018-03-11
DESCRIPTION | 11 MD5 | 34 NAMESPACE | 5 NEWS.md | 14 R/Rraven-package.R | 3 R/exp_raven.R | 2 R/imp_raven.R | 220 ++- R/match_wav_case.R |only R/relabel_colms.R | 19 R/sort_colms.R |only README.md | 11 inst/CITATION | 2 inst/doc/Rraven.R | 157 +- inst/doc/Rraven.Rmd | 178 +- inst/doc/Rraven.html | 3240 ++++++++++++++++++++++++++++++++++++++------------ man/imp_raven.Rd | 25 man/match_wav_case.Rd |only man/relabel_colms.Rd | 8 man/sort_colms.Rd |only vignettes/Rraven.Rmd | 178 +- 20 files changed, 3031 insertions(+), 1076 deletions(-)
Title: Fit Univariate Distributions
Description: Wrapper for computing parameters for univariate distributions using MLE. It creates an object that stores d, p, q, r functions as well as parameters and statistics for diagnostics. Currently supports automated fitting from base and actuar packages. A manually fitting distribution fitting function is included to support directly specifying parameters for any distribution from ancillary packages.
Author: Thomas Roh [aut, cre]
Maintainer: Thomas Roh <thomas@roh.engineering>
Diff between fitur versions 0.5.20 dated 2017-12-19 and 0.5.25 dated 2018-03-11
fitur-0.5.20/fitur/man/fit_empirical_continuous.Rd |only fitur-0.5.20/fitur/man/fit_empirical_discrete.Rd |only fitur-0.5.20/fitur/man/summarize_stats.Rd |only fitur-0.5.25/fitur/DESCRIPTION | 6 fitur-0.5.25/fitur/MD5 | 45 +++--- fitur-0.5.25/fitur/NAMESPACE | 3 fitur-0.5.25/fitur/NEWS.md | 8 + fitur-0.5.25/fitur/R/build_dist.R | 16 +- fitur-0.5.25/fitur/R/fit_empirical.R | 23 --- fitur-0.5.25/fitur/R/fit_univariate.R | 23 +-- fitur-0.5.25/fitur/R/globals.R | 4 fitur-0.5.25/fitur/R/tests.R | 9 + fitur-0.5.25/fitur/R/utils.R | 91 ++++++++++++-- fitur-0.5.25/fitur/README.md | 4 fitur-0.5.25/fitur/inst/doc/diagnostic_plots.R | 13 -- fitur-0.5.25/fitur/inst/doc/diagnostic_plots.Rmd | 13 -- fitur-0.5.25/fitur/inst/doc/diagnostic_plots.html | 19 -- fitur-0.5.25/fitur/inst/doc/univariate_distributions.Rmd | 2 fitur-0.5.25/fitur/inst/doc/univariate_distributions.html | 2 fitur-0.5.25/fitur/man/build_dist.Rd | 8 - fitur-0.5.25/fitur/man/calc_moments.Rd |only fitur-0.5.25/fitur/man/fit_univariate.Rd | 7 - fitur-0.5.25/fitur/man/fit_univariate_man.Rd | 6 fitur-0.5.25/fitur/man/plot_density.Rd |only fitur-0.5.25/fitur/vignettes/diagnostic_plots.Rmd | 13 -- fitur-0.5.25/fitur/vignettes/univariate_distributions.Rmd | 2 26 files changed, 169 insertions(+), 148 deletions(-)
Title: Latent Markov Models with and without Covariates
Description: Fit certain versions of the Latent Markov model for longitudinal categorical data.
Author: Francesco Bartolucci, Silvia Pandolfi - University of Perugia (IT)
Maintainer: Francesco Bartolucci <bart@stat.unipg.it>
Diff between LMest versions 2.4.1 dated 2017-10-16 and 2.4.2 dated 2018-03-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/prob_post_cov.R | 2 +- man/LMest-package.Rd | 4 ++-- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Extended Rasch Modeling
Description: Fits Rasch models (RM), linear logistic test models (LLTM), rating scale model (RSM), linear rating scale models (LRSM), partial credit models (PCM), and linear partial credit models (LPCM). Missing values are allowed in the data matrix. Additional features are the ML estimation of the person parameters, Andersen's LR-test, item-specific Wald test, Martin-Loef-Test, nonparametric Monte-Carlo Tests, itemfit and personfit statistics including infit and outfit measures, various ICC and related plots, automated stepwise item elimination, simulation module for various binary data matrices.
Author: Patrick Mair [cre, aut],
Reinhold Hatzinger [aut],
Marco J. Maier [aut],
Thomas Rusch [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between eRm versions 0.15-7 dated 2016-11-20 and 0.16-0 dated 2018-03-11
eRm-0.15-7/eRm/.Rinstignore |only eRm-0.16-0/eRm/DESCRIPTION | 10 eRm-0.16-0/eRm/MD5 | 27 +- eRm-0.16-0/eRm/NAMESPACE | 6 eRm-0.16-0/eRm/R/LRtest.Rm.R | 20 - eRm-0.16-0/eRm/R/PersonMisfit.R |only eRm-0.16-0/eRm/R/plotGOF.LR.R | 165 ++++++++----- eRm-0.16-0/eRm/R/plotGOF.R | 21 + eRm-0.16-0/eRm/R/print.PersonMisfit.R |only eRm-0.16-0/eRm/R/summary.PersonMisfit.R |only eRm-0.16-0/eRm/build/partial.rdb |binary eRm-0.16-0/eRm/build/vignette.rds |binary eRm-0.16-0/eRm/inst/NEWS.Rd | 351 ++++++++++++++--------------- eRm-0.16-0/eRm/inst/NEWSRd2txt.R |only eRm-0.16-0/eRm/inst/doc/eRm.pdf |binary eRm-0.16-0/eRm/man/LRtest.Rd | 310 ++++++++++++------------- eRm-0.16-0/eRm/man/PersonMisfit.Rd |only eRm-0.16-0/eRm/src/registerDynamicSymbol.c |only eRm-0.16-0/eRm/vignettes/UCML.svg |only 19 files changed, 492 insertions(+), 418 deletions(-)
Title: Computerized Adaptive Testing with Multidimensional Item
Response Theory
Description: Provides tools to generate an HTML interface for creating adaptive
and non-adaptive educational and psychological tests using the shiny
package (Chalmers (2016) <doi:10.18637/jss.v071.i05>).
Suitable for applying unidimensional and multidimensional
computerized adaptive tests (CAT) using item response theory methodology and for
creating simple questionnaires forms to collect response data directly in R.
Additionally, optimal test designs (e.g., "shadow testing") are supported
for tests which contain a large number of item selection constraints.
Finally, package contains tools useful for performing Monte Carlo simulations
for studying the behavior of computerized adaptive test banks.
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirtCAT versions 1.6.1 dated 2017-07-26 and 1.7 dated 2018-03-11
DESCRIPTION | 9 +++--- MD5 | 24 +++++++++--------- NEWS.md | 15 +++++++++++ R/DesignClass.R | 25 +++++++++++-------- R/ShinyGUIClass.R | 8 +++++- R/mirtCAT.R | 24 +++++++++++++++--- R/mirtCAT_preamble.R | 6 +++- R/server.R | 57 ++++++++++++++++++++++++++++++++++++++------ R/util.R | 41 ++++++++++++++++++++++++------- build/partial.rdb |binary build/vignette.rds |binary man/mirtCAT.Rd | 24 +++++++++++++++--- tests/GUI-tests/GUI-tests.R | 14 +++++++++- 13 files changed, 193 insertions(+), 54 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-09 1.3
Title: Green Finance and Environmental Risk
Description: Focuses on data collecting, analyzing and visualization in green finance and environmental
risk research and analysis. Main function includes environmental data collecting from
official websites such as MEP (Ministry of Environmental Protection of China, <http://www.mep.gov.cn>), water
related projects identification and environmental data visualization.
Author: Yuanchao Xu [aut, cre]
Maintainer: Yuanchao Xu <xuyuanchao37@gmail.com>
Diff between gfer versions 0.1.9 dated 2017-10-31 and 0.1.10 dated 2018-03-11
gfer-0.1.10/gfer/DESCRIPTION | 8 ++++---- gfer-0.1.10/gfer/MD5 | 14 +++++++------- gfer-0.1.10/gfer/NEWS | 8 ++++++++ gfer-0.1.10/gfer/R/getENNames.R | 2 +- gfer-0.1.10/gfer/R/getMktCap.R | 2 +- gfer-0.1.10/gfer/R/getTickers.R | 2 +- gfer-0.1.10/gfer/build/vignette.rds |binary gfer-0.1.10/gfer/inst/doc/gfer.html |only gfer-0.1.9/gfer/inst/doc/gfer.pdf |only 9 files changed, 22 insertions(+), 14 deletions(-)