Title: Semi-Supervised Classification Methods
Description: Provides a collection of self-labeled techniques for semi-supervised
classification. In semi-supervised classification, both labeled and unlabeled
data are used to train a classifier. This learning paradigm has obtained promising
results, specifically in the presence of a reduced set of labeled examples.
This package implements a collection of self-labeled techniques to construct a
classification model. This family of techniques enlarges the original labeled set
using the most confident predictions to classify unlabeled data. The techniques
implemented can be applied to classification problems in several domains by the
specification of a supervised base classifier. At low ratios of labeled data, it
can be shown to perform better than classical supervised classifiers.
Author: Mabel González [aut] (<https://orcid.org/0000-0003-0152-444X>),
Osmani Rosado-Falcón [aut] (<https://orcid.org/0000-0002-2639-3354>),
José Daniel Rodríguez [aut] (<https://orcid.org/0000-0002-8489-4106>),
Christoph Bergmeir [ths, cre] (<https://orcid.org/0000-0002-3665-9021>),
Isaac Triguero [ctb] (<https://orcid.org/0000-0002-0150-0651>),
José Manuel Benítez [ths] (<https://orcid.org/0000-0002-2346-0793>)
Maintainer: Christoph Bergmeir <c.bergmeir@decsai.ugr.es>
Diff between ssc versions 1.0 dated 2016-10-05 and 2.0.0 dated 2018-03-26
ssc-1.0/ssc/R/BaseClassifier.R |only ssc-1.0/ssc/R/BaseClassifierOneNN.R |only ssc-1.0/ssc/R/Statistics.R |only ssc-1.0/ssc/R/Utils.R |only ssc-1.0/ssc/demo/CoffeeEx.R |only ssc-1.0/ssc/man/bClassif.Rd |only ssc-1.0/ssc/man/bClassifOneNN.Rd |only ssc-1.0/ssc/man/statistics.Rd |only ssc-2.0.0/ssc/DESCRIPTION | 65 +- ssc-2.0.0/ssc/MD5 | 106 ++- ssc-2.0.0/ssc/NAMESPACE | 12 ssc-2.0.0/ssc/R/CoBC.R | 687 +++++++++++++---------- ssc-2.0.0/ssc/R/DataSets.R | 87 +- ssc-2.0.0/ssc/R/Democratic.R | 883 +++++++++++++++++++++--------- ssc-2.0.0/ssc/R/OneNN.R |only ssc-2.0.0/ssc/R/SETRED.R | 536 +++++++++++------- ssc-2.0.0/ssc/R/SNNRCE.R | 482 +++++++++------- ssc-2.0.0/ssc/R/SelfTraining.R | 430 +++++++++----- ssc-2.0.0/ssc/R/SemiSupervised.R | 419 ++++++++++---- ssc-2.0.0/ssc/R/TriTraining.R | 553 ++++++++++++------ ssc-2.0.0/ssc/README.md |only ssc-2.0.0/ssc/data/coffee.RData |binary ssc-2.0.0/ssc/data/wine.RData |binary ssc-2.0.0/ssc/demo/00Index | 18 ssc-2.0.0/ssc/demo/CoBC.R | 133 ++-- ssc-2.0.0/ssc/demo/CoBCG.R |only ssc-2.0.0/ssc/demo/Democratic.R | 117 ++- ssc-2.0.0/ssc/demo/DemocraticG.R |only ssc-2.0.0/ssc/demo/SETRED.R | 130 ++-- ssc-2.0.0/ssc/demo/SETREDG.R |only ssc-2.0.0/ssc/demo/SNNRCE.R | 88 +- ssc-2.0.0/ssc/demo/SelfTraining.R | 127 ++-- ssc-2.0.0/ssc/demo/SelfTrainingG.R |only ssc-2.0.0/ssc/demo/TriTraining.R | 130 ++-- ssc-2.0.0/ssc/demo/TriTrainingG.R |only ssc-2.0.0/ssc/man/coBC.Rd | 188 ++++-- ssc-2.0.0/ssc/man/coBCCombine.Rd |only ssc-2.0.0/ssc/man/coBCG.Rd |only ssc-2.0.0/ssc/man/coffee.Rd | 1 ssc-2.0.0/ssc/man/democratic.Rd | 177 +++--- ssc-2.0.0/ssc/man/democraticCombine.Rd |only ssc-2.0.0/ssc/man/democraticG.Rd |only ssc-2.0.0/ssc/man/oneNN.Rd | 9 ssc-2.0.0/ssc/man/predict.OneNN.Rd | 7 ssc-2.0.0/ssc/man/predict.coBC.Rd | 20 ssc-2.0.0/ssc/man/predict.democratic.Rd | 18 ssc-2.0.0/ssc/man/predict.selfTraining.Rd | 18 ssc-2.0.0/ssc/man/predict.setred.Rd | 18 ssc-2.0.0/ssc/man/predict.snnrce.Rd | 18 ssc-2.0.0/ssc/man/predict.triTraining.Rd | 18 ssc-2.0.0/ssc/man/selfTraining.Rd | 185 ++++-- ssc-2.0.0/ssc/man/selfTrainingG.Rd |only ssc-2.0.0/ssc/man/setred.Rd | 182 ++++-- ssc-2.0.0/ssc/man/setredG.Rd |only ssc-2.0.0/ssc/man/snnrce.Rd | 101 ++- ssc-2.0.0/ssc/man/triTraining.Rd | 164 +++-- ssc-2.0.0/ssc/man/triTrainingCombine.Rd |only ssc-2.0.0/ssc/man/triTrainingG.Rd |only ssc-2.0.0/ssc/man/wine.Rd | 6 ssc-2.0.0/ssc/tests |only 60 files changed, 3901 insertions(+), 2232 deletions(-)
Title: Design and Monitoring of Survival Trials Accounting for Complex
Situations
Description: Calculates various functions needed for design and monitoring survival trials
accounting for complex situations such as delayed treatment effect, treatment crossover, non-uniform accrual,
and different censoring distributions between groups. The event time distribution is assumed to be
piecewise exponential (PWE) distribution and the entry time is assumed to be piecewise uniform distribution.
As compared with Version 1.1.0, this version includes the calculation of the restricted mean survival time and weighted log-rank statistics.
Author: Xiaodong Luo [aut, cre],
Xuezhou Mao [ctb],
Xun Chen [ctb],
Hui Quan [ctb],
Sanofi [cph]
Maintainer: Xiaodong Luo <Xiaodong.Luo@sanofi.com>
Diff between PWEALL versions 1.2.0 dated 2017-10-01 and 1.2.1 dated 2018-03-26
PWEALL-1.2.0/PWEALL/src/PWEALLX2.f90 |only PWEALL-1.2.0/PWEALL/src/init.c |only PWEALL-1.2.1/PWEALL/DESCRIPTION | 10 - PWEALL-1.2.1/PWEALL/MD5 | 48 ++++---- PWEALL-1.2.1/PWEALL/NAMESPACE | 4 PWEALL-1.2.1/PWEALL/R/hxbeta.R |only PWEALL-1.2.1/PWEALL/R/rmstcov.R | 19 +-- PWEALL-1.2.1/PWEALL/R/rmsth.R | 36 +++--- PWEALL-1.2.1/PWEALL/R/rmstpower.R | 17 +-- PWEALL-1.2.1/PWEALL/R/rmstpowerfindt.R | 8 - PWEALL-1.2.1/PWEALL/R/rmstsim.R | 26 +++- PWEALL-1.2.1/PWEALL/R/rmstutil.R | 32 +++-- PWEALL-1.2.1/PWEALL/R/rpwecx.R | 29 +---- PWEALL-1.2.1/PWEALL/R/wlrcal.R | 49 ++++---- PWEALL-1.2.1/PWEALL/R/wlrcom.R | 13 +- PWEALL-1.2.1/PWEALL/R/wlrutil.R | 42 +++---- PWEALL-1.2.1/PWEALL/build/partial.rdb |binary PWEALL-1.2.1/PWEALL/man/hxbeta.Rd |only PWEALL-1.2.1/PWEALL/man/rmstcov.Rd | 142 ++++++++++++------------- PWEALL-1.2.1/PWEALL/man/rmsth.Rd | 12 +- PWEALL-1.2.1/PWEALL/man/rmstpower.Rd | 14 +- PWEALL-1.2.1/PWEALL/man/rmstpowerfindt.Rd | 18 +-- PWEALL-1.2.1/PWEALL/man/rmstsim.Rd | 166 +++++++++++++++--------------- PWEALL-1.2.1/PWEALL/man/rmstutil.Rd | 14 +- PWEALL-1.2.1/PWEALL/man/wlrcal.Rd | 1 PWEALL-1.2.1/PWEALL/man/wlrcom.Rd | 5 PWEALL-1.2.1/PWEALL/src/PWEALL.f90 |only PWEALL-1.2.1/PWEALL/src/PWEALL_init.c |only 28 files changed, 361 insertions(+), 344 deletions(-)
Title: Identify Event Sequences Using Time Series Joins
Description: Examine any number of time series data frames to identify
instances in which various criteria are met within specified time
frames. In clinical medicine, these types of events are often
called "constellations of signs and symptoms", because a single
condition depends on a series of events occurring within a certain
amount of time of each other. This package was written to work with
any number of time series data frames and is optimized for speed
to work well with data frames with millions of rows.
Author: Mark Sendak [aut, cre]
Maintainer: Mark Sendak <mark.sendak@gmail.com>
Diff between constellation versions 0.1.0 dated 2017-11-30 and 0.2.0 dated 2018-03-26
DESCRIPTION | 10 - MD5 | 41 +++-- NAMESPACE | 4 R/bundle.R | 59 ++++++-- R/constellate.R | 44 ++++-- R/constellate_criteria.R | 84 ++++++----- R/incidents.R |only R/value_change.R | 21 +- README.md | 79 ++++++---- inst/doc/identify_sepsis.R | 22 +-- inst/doc/identify_sepsis.Rmd | 35 +++- inst/doc/identify_sepsis.html | 118 +++++++++------- man/bundle.Rd | 17 +- man/constellate.Rd | 15 +- man/constellate_criteria.Rd | 21 ++ man/incidents.Rd |only man/value_change.Rd | 15 +- tests/testthat/test-bundle.R | 212 +++++++++++++++++++---------- tests/testthat/test-constellate.R | 77 ++++++---- tests/testthat/test-constellate_criteria.R | 121 +++++++++------- tests/testthat/test-incidents.R |only tests/testthat/test-value_change.R | 120 +++++++++------- vignettes/identify_sepsis.Rmd | 35 +++- 23 files changed, 714 insertions(+), 436 deletions(-)
Title: Functions for Elementary Bayesian Inference
Description: A set of R functions and data sets for the book Introduction to Bayesian Statistics, Bolstad, W.M. (2017), John Wiley & Sons ISBN 978-1-118-09156-2.
Author: James Curran [aut, cre]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between Bolstad versions 0.2-37 dated 2018-02-23 and 0.2-38 dated 2018-03-26
DESCRIPTION | 8 - MD5 | 18 +-- R/binobp.r | 9 + R/binomixp.r | 229 ++++++++++++++++++++------------------------- R/createPrior.default.R | 16 ++- R/normgcp.r | 152 +++++++++++++++++------------ man/binobp.Rd | 3 man/binomixp.Rd | 30 ++--- man/createPrior.default.Rd | 4 man/normgcp.Rd | 2 10 files changed, 247 insertions(+), 224 deletions(-)
Title: Multivariate Normal Functions for Sparse Covariance and
Precision Matrices
Description: Computes multivariate normal (MVN) densities, and
samples from MVN distributions, when the covariance or
precision matrix is sparse.
Author: Michael Braun [aut, cre, cph]
Maintainer: Michael Braun <braunm@smu.edu>
Diff between sparseMVN versions 0.2.1 dated 2017-05-24 and 0.2.1.1 dated 2018-03-26
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- NEWS | 3 +++ R/binary.R | 2 +- R/rmvn-sparse.R | 4 ++-- build/vignette.rds |binary inst/doc/replication.R | 4 ++-- inst/doc/sparseMVN.R | 12 ++++++------ inst/doc/sparseMVN.Rnw | 12 ++++++------ inst/doc/sparseMVN.pdf |binary man/rmvn.sparse.Rd | 4 ++-- tests/testthat/test_sparseMVN.R | 4 ++-- vignettes/replication.R | 4 ++-- vignettes/sparseMVN.Rnw | 12 ++++++------ 14 files changed, 50 insertions(+), 47 deletions(-)
Title: Update and Manipulate Rd Documentation Objects
Description: Functions for manipulation of Rd objects, including function reprompt()
for updating existing Rd documentation for functions, methods and classes;
function rebib() for import of references from 'bibtex' files; a macro for
importing 'bibtex' references which can be used in Rd files and 'roxygen2'
comments; and other convenience functions for references.
Author: Georgi N. Boshnakov [aut, cre],
Duncan Murdoch [ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Rdpack versions 0.5-5 dated 2018-02-14 and 0.7-0 dated 2018-03-26
Rdpack-0.5-5/Rdpack/NEWS |only Rdpack-0.7-0/Rdpack/DESCRIPTION | 10 Rdpack-0.7-0/Rdpack/MD5 | 49 Rdpack-0.7-0/Rdpack/NAMESPACE | 14 Rdpack-0.7-0/Rdpack/NEWS.md |only Rdpack-0.7-0/Rdpack/R/bib.R | 548 ++++++++-- Rdpack-0.7-0/Rdpack/README.md | 119 +- Rdpack-0.7-0/Rdpack/build/partial.rdb |binary Rdpack-0.7-0/Rdpack/inst/REFERENCES.bib | 1 Rdpack-0.7-0/Rdpack/inst/doc/Inserting_bibtex_references.R | 7 Rdpack-0.7-0/Rdpack/inst/doc/Inserting_bibtex_references.Rnw | 143 ++ Rdpack-0.7-0/Rdpack/inst/doc/Inserting_bibtex_references.pdf |binary Rdpack-0.7-0/Rdpack/inst/examples |only Rdpack-0.7-0/Rdpack/man/Rdpack-package.Rd | 50 Rdpack-0.7-0/Rdpack/man/bibentry_key.Rd | 10 Rdpack-0.7-0/Rdpack/man/c_Rd.Rd | 10 Rdpack-0.7-0/Rdpack/man/get_bibentries.Rd | 99 + Rdpack-0.7-0/Rdpack/man/get_sig_text.Rd | 2 Rdpack-0.7-0/Rdpack/man/insert_all_ref.Rd |only Rdpack-0.7-0/Rdpack/man/insert_ref.Rd | 88 + Rdpack-0.7-0/Rdpack/man/inspect_Rd.Rd | 3 Rdpack-0.7-0/Rdpack/man/inspect_signatures.Rd | 7 Rdpack-0.7-0/Rdpack/man/list_Rd.Rd | 5 Rdpack-0.7-0/Rdpack/man/macros/refmacros.Rd | 4 Rdpack-0.7-0/Rdpack/man/parse_text.Rd | 5 Rdpack-0.7-0/Rdpack/man/predefined.Rd | 4 Rdpack-0.7-0/Rdpack/vignettes/Inserting_bibtex_references.Rnw | 143 ++ 27 files changed, 1051 insertions(+), 270 deletions(-)
Title: Global Charcoal Database
Description: Contains the Global Charcoal database data. Data include charcoal
series (age, depth, charcoal quantity, associated units and methods) and
information on sedimentary sites (localisation, depositional environment, biome,
etc.) as well as publications informations. Since 4.0.0 the GCD mirrors the online SQL database at <http://paleofire.org>.
Author: Global Paleofire Working Group <paleofire@univ-fcomte.fr>
Maintainer: Olivier Blarquez <blarquez@gmail.com>
Diff between GCD versions 4.0.0 dated 2018-03-01 and 4.0.1 dated 2018-03-26
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 9 ++++++++- data/PNV_L12.rda |binary data/PNV_RF99.rda |binary data/paleofiredata.rda |binary data/paleofiresites.rda |binary data/pub.rda |binary data/pub_key.rda |binary 9 files changed, 20 insertions(+), 13 deletions(-)
Title: Data-Limited Methods Toolkit
Description: Development, simulation testing, and implementation of management
procedures for data-limited fisheries
(see Carruthers et al (2014) <doi:10.1016/j.fishres.2013.12.014>).
Author: Tom Carruthers [aut, cre],
Adrian Hordyk [aut],
M. Bryan [ctb],
HF. Geremont [ctb],
C. Grandin [ctb],
W. Harford [ctb],
Q. Huynh [ctb],
C. Walters [ctb]
Maintainer: Tom Carruthers <t.carruthers@fisheries.ubc.ca>
Diff between DLMtool versions 5.1.2 dated 2018-03-21 and 5.1.3 dated 2018-03-26
DESCRIPTION | 8 MD5 | 149 ++++++------- NAMESPACE | 1 NEWS.md | 10 R/Data_Functions.R | 6 R/MPs_Output.R | 72 ++++-- R/MSE_Plotting.R | 2 R/Misc_Exported.R | 13 - R/OM_functions.R | 10 R/RcppExports.R | 330 ++++++++++++++--------------- R/SampleOM.R | 210 +++++++++++++++--- R/StochasticSRA.R | 40 +-- R/popdyn.R | 20 + R/runMSE.r | 47 +++- man/AvC.Rd | 15 + man/Cant.Rd | 2 man/Converge.Rd | 20 - man/DFO_hist.Rd | 4 man/DFO_plot.Rd | 2 man/DFO_plot2.Rd | 2 man/DFO_proj.Rd | 2 man/DLMtool-package.Rd | 4 man/Fleet-class.Rd | 8 man/ICI.Rd | 12 - man/ICI2.Rd | 10 man/ITM.Rd | 4 man/Iratio.Rd | 8 man/Itarget1_MPA.Rd | 2 man/LSRA.Rd | 12 - man/LSRA2.Rd | 12 - man/LSRA_opt.Rd | 10 man/LSRA_opt_cpp.Rd | 10 man/Lratio_BHI.Rd | 20 - man/Lratio_BHI2.Rd | 14 - man/MCD.Rd | 2 man/MSE-class.Rd | 70 +++--- man/OM-class.Rd | 6 man/OMdoc.Rd | 4 man/OMinit.Rd | 6 man/Replace.Rd | 2 man/SampleFleetPars.Rd | 2 man/SampleImpPars.Rd | 4 man/SampleObsPars.Rd | 4 man/Sense.Rd | 4 man/StochasticSRA.Rd | 2 man/StochasticSRAcpp.Rd | 6 man/SubOM.Rd | 2 man/Tplot3.Rd | 2 man/TradePlot.Rd | 2 man/XL2Data.Rd | 2 man/XL2OM.Rd | 4 man/checkMSE.Rd | 2 man/fetch.file.names.Rd | 2 man/figures |only man/getFref3.Rd | 4 man/getq3.Rd | 4 man/iSCAM2DLM.Rd | 10 man/iSCAM2Data.Rd | 8 man/iSCAMcomps.Rd | 4 man/iSCAMinds.Rd | 8 man/initialize-methods.Rd | 17 - man/load.iscam.files.Rd | 4 man/plot-Imp.Rd | 2 man/plot-Obs.Rd | 2 man/plotFun.Rd | 2 man/plotStock.Rd | 2 man/popdynCPP.Rd | 4 man/runMSE.Rd | 12 - man/runMSErobust.Rd | 12 - man/simYears.Rd | 4 man/updateMSE.Rd | 2 src/LSRA_opt_cpp.cpp | 10 src/genLenComp.cpp | 6 tests/manual/run-tests-thorough.R | 36 ++- tests/manual/test-code/test-MSE_Plotting.R | 3 tests/manual/test-code/test-runMSE.R | 23 ++ 76 files changed, 847 insertions(+), 551 deletions(-)
Title: Primal or Dual Cone Projections with Routines for Constrained
Regression
Description: Routines doing cone projection and quadratic programming, as well as doing estimation and inference for constrained parametric regression and shape-restricted regression problems.
Author: Mary C. Meyer and Xiyue Liao
Maintainer: Xiyue Liao <liaoxiyue2011@gmail.com>
Diff between coneproj versions 1.12 dated 2017-09-19 and 1.13 dated 2018-03-26
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/coneproj.R | 36 ++++++++++++++++++------------------ src/coneproj.cpp | 6 +++--- 5 files changed, 32 insertions(+), 29 deletions(-)
Title: Check the Properties of Common R Objects
Description: Expressive assertive pipe-friendly, dependency-free functions
to check the properties of common R objects.
In the case of failure the functions issue informative error messages that
(hopefully!) allow users to quickly identify and fix any problems.
The functions are designed to be used in scripts and packages.
Author: Joe Thorley [aut, cre]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between checkr versions 0.1.0 dated 2018-03-02 and 0.2.0 dated 2018-03-26
checkr-0.1.0/checkr/R/missing.R |only checkr-0.1.0/checkr/R/n.R |only checkr-0.1.0/checkr/R/nas.R |only checkr-0.1.0/checkr/R/try.R |only checkr-0.1.0/checkr/R/values.R |only checkr-0.2.0/checkr/DESCRIPTION | 15 - checkr-0.2.0/checkr/MD5 | 176 ++++++++-------- checkr-0.2.0/checkr/NAMESPACE | 4 checkr-0.2.0/checkr/NEWS.md | 7 checkr-0.2.0/checkr/R/checkr-package.R |only checkr-0.2.0/checkr/R/classes.R | 7 checkr-0.2.0/checkr/R/colnames.R | 8 checkr-0.2.0/checkr/R/count.R | 3 checkr-0.2.0/checkr/R/data.R | 7 checkr-0.2.0/checkr/R/date.R | 1 checkr-0.2.0/checkr/R/datetime.R | 3 checkr-0.2.0/checkr/R/flag.R | 31 ++ checkr-0.2.0/checkr/R/homogenous.R |only checkr-0.2.0/checkr/R/inherits.R | 3 checkr-0.2.0/checkr/R/internal.R |only checkr-0.2.0/checkr/R/join.R | 10 checkr-0.2.0/checkr/R/key.R | 2 checkr-0.2.0/checkr/R/length.R | 4 checkr-0.2.0/checkr/R/levels.R | 6 checkr-0.2.0/checkr/R/list.R | 14 - checkr-0.2.0/checkr/R/missing-colnames.R |only checkr-0.2.0/checkr/R/missing-names.R |only checkr-0.2.0/checkr/R/named.R | 3 checkr-0.2.0/checkr/R/names.R | 6 checkr-0.2.0/checkr/R/nchar.R | 3 checkr-0.2.0/checkr/R/ncol.R | 3 checkr-0.2.0/checkr/R/nlevels.R | 3 checkr-0.2.0/checkr/R/nrow.R | 5 checkr-0.2.0/checkr/R/null.R | 2 checkr-0.2.0/checkr/R/number.R | 3 checkr-0.2.0/checkr/R/pattern.R | 1 checkr-0.2.0/checkr/R/probability.R | 3 checkr-0.2.0/checkr/R/regex.R | 3 checkr-0.2.0/checkr/R/scalar.R | 3 checkr-0.2.0/checkr/R/sorted.R | 8 checkr-0.2.0/checkr/R/string.R | 1 checkr-0.2.0/checkr/R/tz.R | 18 - checkr-0.2.0/checkr/R/tzone.R |only checkr-0.2.0/checkr/R/unique.R | 3 checkr-0.2.0/checkr/R/unnamed.R | 3 checkr-0.2.0/checkr/R/unused.R |only checkr-0.2.0/checkr/R/utils.R | 23 -- checkr-0.2.0/checkr/README.md | 30 +- checkr-0.2.0/checkr/build/vignette.rds |binary checkr-0.2.0/checkr/inst/JOSS/paper.Rmd | 16 + checkr-0.2.0/checkr/inst/JOSS/paper.bib | 17 + checkr-0.2.0/checkr/inst/JOSS/paper.html | 29 +- checkr-0.2.0/checkr/inst/JOSS/paper.md | 33 ++- checkr-0.2.0/checkr/inst/doc/assertive-programming.Rmd | 4 checkr-0.2.0/checkr/inst/doc/assertive-programming.html | 7 checkr-0.2.0/checkr/inst/doc/checkr-naming.R |only checkr-0.2.0/checkr/inst/doc/checkr-naming.Rmd |only checkr-0.2.0/checkr/inst/doc/checkr-naming.html |only checkr-0.2.0/checkr/man/check_classes.Rd | 10 checkr-0.2.0/checkr/man/check_colnames.Rd | 10 checkr-0.2.0/checkr/man/check_count.Rd | 5 checkr-0.2.0/checkr/man/check_data.Rd | 9 checkr-0.2.0/checkr/man/check_date.Rd | 3 checkr-0.2.0/checkr/man/check_datetime.Rd | 5 checkr-0.2.0/checkr/man/check_flag.Rd | 3 checkr-0.2.0/checkr/man/check_flag_na.Rd |only checkr-0.2.0/checkr/man/check_homogenous.Rd |only checkr-0.2.0/checkr/man/check_inherits.Rd | 5 checkr-0.2.0/checkr/man/check_join.Rd | 8 checkr-0.2.0/checkr/man/check_key.Rd | 5 checkr-0.2.0/checkr/man/check_length.Rd | 6 checkr-0.2.0/checkr/man/check_levels.Rd | 8 checkr-0.2.0/checkr/man/check_list.Rd | 17 + checkr-0.2.0/checkr/man/check_missing_colnames.Rd | 7 checkr-0.2.0/checkr/man/check_missing_names.Rd | 7 checkr-0.2.0/checkr/man/check_named.Rd | 5 checkr-0.2.0/checkr/man/check_names.Rd | 8 checkr-0.2.0/checkr/man/check_nchar.Rd | 5 checkr-0.2.0/checkr/man/check_ncol.Rd | 5 checkr-0.2.0/checkr/man/check_nlevels.Rd | 5 checkr-0.2.0/checkr/man/check_nrow.Rd | 7 checkr-0.2.0/checkr/man/check_null.Rd | 2 checkr-0.2.0/checkr/man/check_number.Rd | 5 checkr-0.2.0/checkr/man/check_pattern.Rd | 3 checkr-0.2.0/checkr/man/check_probability.Rd | 5 checkr-0.2.0/checkr/man/check_regex.Rd | 5 checkr-0.2.0/checkr/man/check_scalar.Rd | 5 checkr-0.2.0/checkr/man/check_sorted.Rd | 8 checkr-0.2.0/checkr/man/check_string.Rd | 3 checkr-0.2.0/checkr/man/check_tz.Rd | 10 checkr-0.2.0/checkr/man/check_tzone.Rd |only checkr-0.2.0/checkr/man/check_unique.Rd | 5 checkr-0.2.0/checkr/man/check_unnamed.Rd | 5 checkr-0.2.0/checkr/man/check_unused.Rd |only checkr-0.2.0/checkr/man/checkr-package.Rd |only checkr-0.2.0/checkr/tests/testthat/test-flag.R | 13 + checkr-0.2.0/checkr/tests/testthat/test-homogenous.R |only checkr-0.2.0/checkr/tests/testthat/test-tzone.R |only checkr-0.2.0/checkr/tests/testthat/test-unused.R |only checkr-0.2.0/checkr/vignettes/assertive-programming.Rmd | 4 checkr-0.2.0/checkr/vignettes/checkr-naming.Rmd |only 101 files changed, 519 insertions(+), 228 deletions(-)
Title: Bayesian Variable Selection in High Dimensional Settings using
Nonlocal Priors
Description: Variable/Feature selection in high or ultra-high dimensional
settings has gained a lot of attention recently specially in cancer genomic
studies. This package provides a Bayesian approach to tackle this problem,
where it exploits mixture of point masses at zero and nonlocal priors to
improve the performance of variable selection and coefficient estimation.
product moment (pMOM) and product inverse moment (piMOM) nonlocal priors
are implemented and can be used for the analyses. This package performs
variable selection for binary response and survival time response datasets
which are widely used in biostatistic and bioinformatics community.
Benefiting from parallel computing ability, it reports necessary outcomes
of Bayesian variable selection such as Highest Posterior Probability Model
(HPPM), Median Probability Model (MPM) and posterior inclusion probability
for each of the covariates in the model. The option to use Bayesian Model
Averaging (BMA) is also part of this package that can be exploited for
predictive power measurements in real datasets.
Author: Amir Nikooienejad [aut, cre], Valen E. Johnson [ths]
Maintainer: Amir Nikooienejad <amir@stat.tamu.edu>
Diff between BVSNLP versions 0.9.10 dated 2018-02-07 and 1.1.0 dated 2018-03-26
DESCRIPTION | 26 ++- MD5 | 34 ++-- R/CoefEst.R | 163 ++++++++++++----------- R/HyperSelect.R | 355 +++++++++++++++++++++++++++------------------------- R/ModProb.R | 13 + R/RcppExports.R | 42 +++--- R/bvs.R | 60 +++++--- R/predBMA.R | 292 +++++++++++++++++++++--------------------- R/zzz.R | 2 man/CoefEst.Rd | 7 - man/HyperSelect.Rd | 10 + man/ModProb.Rd | 9 + man/bvs.Rd | 26 ++- man/cox_bvs.Rd | 8 - man/logreg_bvs.Rd | 9 + man/predBMA.Rd | 14 +- src/Functions.cpp | 270 +++++++++++++++++++++++++-------------- src/RcppExports.cpp | 56 ++++---- 18 files changed, 789 insertions(+), 607 deletions(-)
Title: A Way of Writing Functions that Quote their Arguments
Description: A facility for writing functions that quote their arguments,
may sometimes evaluate them in the environment where they were quoted,
and may pass them as quoted to other functions.
Author: Radford Neal
Maintainer: Radford Neal <radfordneal@gmail.com>
Diff between quotedargs versions 0.1.1 dated 2018-01-08 and 0.1.2 dated 2018-03-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 5 +++++ src/quotedargs.c | 5 ++++- 4 files changed, 15 insertions(+), 7 deletions(-)
Title: Read Untidy Excel Files
Description: Imports non-tabular from Excel files into R. Exposes cell content,
position and formatting in a tidy structure for further manipulation.
Tokenizes Excel formulas. Supports '.xlsx' and '.xlsm' via the embedded
'RapidXML' C++ library <http://rapidxml.sourceforge.net>. Does not support
'.xlsb' or '.xls'.
Author: Duncan Garmonsway [aut, cre],
Hadley Wickham [ctb] (Author of included readxl fragments),
Jenny Bryan [ctb] (Author of included readxl fragments),
RStudio [cph] (Copyright holder of included readxl fragments),
Marcin Kalicinski [ctb, cph] (Author of included RapidXML code)
Maintainer: Duncan Garmonsway <nacnudus@gmail.com>
Diff between tidyxl versions 1.0.0 dated 2017-11-25 and 1.0.1 dated 2018-03-26
DESCRIPTION | 8 MD5 | 63 ++-- NAMESPACE | 1 NEWS.md | 13 R/maybe_xlsx.R |only R/tidyxl-package.R | 15 R/utils.R | 23 - R/xlsx_cells.R | 5 R/xlsx_color_theme.R | 5 R/xlsx_formats.R | 5 R/xlsx_names.R | 5 R/xlsx_sheet_names.R | 5 README.md | 10 build/vignette.rds |binary inst/doc/data-validation-rules.html | 448 +++++++++++++++-------------- inst/doc/smells.html | 220 +++++++------- inst/doc/tidyxl.html | 496 ++++++++++++++++----------------- inst/extdata/examples.xls |only inst/extdata/examples.xlsb |only inst/extdata/examples.xlsm |only inst/extdata/examples.xlsx |binary inst/extdata/examples.xltm |only inst/extdata/examples.xltx |only man/maybe_xlsx.Rd |only man/tidyxl.Rd | 11 man/xlsx_cells.Rd | 6 man/xlsx_color_theme.Rd | 8 man/xlsx_formats.Rd | 6 man/xlsx_names.Rd | 6 man/xlsx_sheet_names.Rd | 6 src/date.h | 4 tests/testthat/examples.xls |only tests/testthat/examples.xlsb |only tests/testthat/examples.xlsm |only tests/testthat/examples.xlsx |binary tests/testthat/examples.xltm |only tests/testthat/examples.xltx |only tests/testthat/test-maybe_xlsx.R |only tests/testthat/test-xlsx_sheet_names.R | 2 39 files changed, 748 insertions(+), 623 deletions(-)
Title: Randomization Inference for Randomized Experiments
Description: Randomization inference procedures for simple and complex randomized designs, including multi-armed trials, as described in Gerber and Green (2012, ISBN: 978-0393979954). Users formally describe their randomization procedure and test statistic. The randomization distribution of the test statistic under some null hypothesis is efficiently simulated.
Author: Alexander Coppock [aut, cre]
Maintainer: Alexander Coppock <acoppock@gmail.com>
Diff between ri2 versions 0.1.0 dated 2018-01-31 and 0.1.1 dated 2018-03-26
DESCRIPTION | 6 +- MD5 | 44 ++++++++++--------- R/conduct_conditional_ra.R | 20 ++++---- R/conduct_ri.R | 3 + R/conduct_ri_ATE.R | 20 ++++++-- R/conduct_ri_f.R | 19 ++++---- R/conduct_ri_test_function.R | 2 R/generate_pos.R | 19 +------- R/switching_equation.R | 11 +--- build/vignette.rds |binary inst/doc/ri2_vignette.html | 62 +++++++++++++-------------- inst/doc/ri2_vs_ri.html | 4 - man/conduct_ri.Rd | 3 + man/figures |only tests/testthat/test-blocked.R |only tests/testthat/test-conduct_conditional_ra.R | 5 +- tests/testthat/test-diff_variances.R | 2 tests/testthat/test-f_stat.R | 4 + tests/testthat/test-generate_pos.R | 2 tests/testthat/test-multi-arm.R | 2 tests/testthat/test-progress_bar.R | 1 tests/testthat/test-studentize.R | 1 tests/testthat/test-two-arm.R | 2 23 files changed, 126 insertions(+), 106 deletions(-)
Title: Generalized Joint Attribute Modeling
Description: Analyzes joint attribute data (e.g., species abundance) that are combinations of continuous and discrete data with Gibbs sampling.
Author: James S. Clark, Daniel Taylor-Rodriquez
Maintainer: James S. Clark <jimclark@duke.edu>
Diff between gjam versions 2.1.9 dated 2018-02-27 and 2.2.0 dated 2018-03-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/doc/gjamVignette.html | 28 ++++++++++++++-------------- man/gjam-package.Rd | 4 ++-- 4 files changed, 23 insertions(+), 23 deletions(-)
Title: An Integrated Framework for Textual Sentiment Time Series
Aggregation and Prediction
Description: Optimized prediction based on textual sentiment, accounting for the intrinsic challenge that sentiment can be computed and pooled across texts and time in various ways. See Ardia et al. (2017) <https://ssrn.com/abstract=3067734>.
Author: David Ardia [aut],
Keven Bluteau [aut],
Samuel Borms [aut, cre],
Kris Boudt [aut]
Maintainer: Samuel Borms <samuel.borms@unine.ch>
Diff between sentometrics versions 0.3 dated 2018-03-18 and 0.3.5 dated 2018-03-26
DESCRIPTION | 6 +- MD5 | 72 ++++++++++++++--------------- NAMESPACE | 4 + NEWS.md | 9 +++ R/sentocorpus.R | 54 ++++++++++++++-------- R/sentomeasures.R | 106 +++++++++++++++++++++----------------------- R/sentometrics.R | 21 ++++++-- R/sentomodel.R | 45 ++++++++++-------- R/utils.R | 3 - R/zzz.R | 3 - README.md | 2 man/add_features.Rd | 9 ++- man/almons.Rd | 1 man/compute_sentiment.Rd | 9 ++- man/ctr_merge.Rd | 6 +- man/ctr_model.Rd | 8 +-- man/diff.sentomeasures.Rd | 6 +- man/epu.Rd | 5 ++ man/extract_peakdocs.Rd | 6 +- man/fill_measures.Rd | 6 +- man/lexicons.Rd | 2 man/merge_measures.Rd | 6 +- man/perform_MCS.Rd | 8 +-- man/perform_agg.Rd | 6 +- man/plot.sentomeasures.Rd | 6 +- man/plot.sentomodeliter.Rd | 8 +-- man/scale.sentomeasures.Rd | 6 +- man/select_measures.Rd | 6 +- man/sento_corpus.Rd | 17 +++---- man/sento_measures.Rd | 6 +- man/sento_model.Rd | 8 +-- man/sentometrics-package.Rd | 4 - man/setup_lexicons.Rd | 4 - man/subset_measures.Rd | 6 +- man/to_global.Rd | 6 +- man/usnews.Rd | 2 man/valence.Rd | 5 ++ 37 files changed, 271 insertions(+), 216 deletions(-)
Title: Quantification of Fate Bias in Multipotent Progenitors
Description: Application of 'FateID' allows computation and visualization of cell fate bias for multi-lineage single cell transcriptome data. Herman, J.S., Sagar, Grün D. (2017) <doi:10.1101/218115>.
Author: Dominic Grün <dominic.gruen@gmail.com>
Maintainer: Dominic Grün <dominic.gruen@gmail.com>
Diff between FateID versions 0.0.9 dated 2017-11-15 and 0.1.1 dated 2018-03-26
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- R/FateID_functions.R | 5 +++-- inst/doc/FateID.html | 4 ++-- 4 files changed, 14 insertions(+), 13 deletions(-)
Title: Design of Experiments Suite: Generate and Evaluate Optimal
Designs
Description: Generates and evaluates D, I, A, Alias, E, T, and G optimal designs. Supports generation and evaluation of split/split-split/.../N-split plot designs. Includes parametric and Monte Carlo power evaluation functions, and supports calculating power for censored responses. Provides a framework to evaluate power using functions provided in other packages or written by the user. Includes a Shiny graphical user interface that displays the underlying code used to create and evaluate the design to improve ease-of-use and make analyses more reproducible.
Author: Tyler Morgan-Wall [aut, cre],
George Khoury [aut]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between skpr versions 0.45.2 dated 2018-01-22 and 0.47.5 dated 2018-03-26
skpr-0.45.2/skpr/inst/COPYRIGHTS |only skpr-0.45.2/skpr/inst/shiny/skprGUI/www/waves.css |only skpr-0.45.2/skpr/inst/shiny/skprGUI/www/waves.js |only skpr-0.45.2/skpr/src/init.c |only skpr-0.47.5/skpr/DESCRIPTION | 10 skpr-0.47.5/skpr/MD5 | 45 skpr-0.47.5/skpr/NAMESPACE | 1 skpr-0.47.5/skpr/NEWS | 21 skpr-0.47.5/skpr/R/RcppExports.R | 8 skpr-0.47.5/skpr/R/eval_design.R | 10 skpr-0.47.5/skpr/R/eval_design_custom_mc.R | 8 skpr-0.47.5/skpr/R/eval_design_mc.R | 8 skpr-0.47.5/skpr/R/eval_design_survival_mc.R | 8 skpr-0.47.5/skpr/R/gen_design.R | 92 - skpr-0.47.5/skpr/R/skprGUI.R | 11 skpr-0.47.5/skpr/inst/shiny/skprGUI/global.R |only skpr-0.47.5/skpr/inst/shiny/skprGUI/server.R | 102 - skpr-0.47.5/skpr/inst/shiny/skprGUI/ui.R | 1628 ++++++++++------------ skpr-0.47.5/skpr/man/eval_design.Rd | 4 skpr-0.47.5/skpr/man/eval_design_custom_mc.Rd | 4 skpr-0.47.5/skpr/man/eval_design_mc.Rd | 4 skpr-0.47.5/skpr/man/eval_design_survival_mc.Rd | 4 skpr-0.47.5/skpr/man/gen_design.Rd | 9 skpr-0.47.5/skpr/src/RcppExports.cpp | 35 skpr-0.47.5/skpr/src/genOptimalDesign.cpp | 119 + skpr-0.47.5/skpr/tests/testthat/Rplots.pdf |binary 26 files changed, 1121 insertions(+), 1010 deletions(-)
Title: Power in a Group Sequential Design
Description: Tools for the evaluation of interim analysis plans for sequentially
monitored trials on a survival endpoint; tools to construct efficacy and
futility boundaries, for deriving power of a sequential design at a specified
alternative, template for evaluating the performance of candidate plans at a
set of time varying alternatives.
Author: Grant Izmirlian
Maintainer: Grant Izmirlian <izmirlig@mail.nih.gov>
Diff between PwrGSD versions 2.2 dated 2018-02-09 and 2.3 dated 2018-03-26
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- inst/doc/GrpSeqBnds-vignette.pdf |binary inst/doc/PwrGSD-vignette.pdf |binary inst/doc/cpd-PwrGSD-vignette.pdf |binary src/AsyPwrGSD.c | 24 ++++++++++++------------ src/Finv.c | 2 +- src/SimPwrGSD.c | 24 ++++++++++++------------ src/agghaz.c | 2 +- src/cpblocked.c | 6 +++--- src/drift.c | 20 ++++++++++---------- src/grpseqbnds.c | 24 ++++++++++++------------ src/lookup.c | 2 +- src/projectend.c | 8 ++++---- 14 files changed, 73 insertions(+), 73 deletions(-)
Title: An R Wrapper of the 'Inform' C Library for Information Analysis
of Complex Systems
Description: An R wrapper of the 'Inform' v1.0.0 C library for performing
information analysis of complex systems. As for the 'Inform' library, 'rinform' is
structured around the concepts of: 1) discrete empirical probability distributions
which form the basis for all of the information-theoretic measures; 2) classic
information-theoretic measures built upon empirical distributions (e.g., Shannon entropy,
mutual information, cross entropy); and 3) advanced measures of information dynamics
for time series (e.g., transfer entropy, active information, evidence of integration).
In addition to the core components, 'rinform' also provides a collection of utilities to
manipulate time series (e.g., binning of continuous values, black-boxing of time series).
Author: Gabriele Valentini [aut, cre, cph],
Douglas G. Moore [ctb, cph]
Maintainer: Gabriele Valentini <gvalent3@asu.edu>
Diff between rinform versions 1.0.1 dated 2018-03-17 and 1.0.2 dated 2018-03-26
DESCRIPTION | 7 +- MD5 | 20 +++---- NEWS.md | 17 +++++- README.md | 89 ++++++++++++++++++++++++++++++-- inst/doc/rinform-vignette.Rmd | 12 ++-- inst/doc/rinform-vignette.html | 22 +++---- src/inform-1.0.0/Makevars | 31 +---------- src/inform-1.0.0/src/transfer_entropy.c | 4 - src/rinform_black_box.c | 10 +-- src/rinform_integration_evidence.c | 5 - vignettes/rinform-vignette.Rmd | 12 ++-- 11 files changed, 155 insertions(+), 74 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of
Extension Program Evaluation in R" and "An R
Companion for the Handbook of Biological Statistics".
Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 1.11.3 dated 2018-02-19 and 1.13.0 dated 2018-03-26
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++++++++----------- NAMESPACE | 7 +++++++ R/Data.R | 17 ++++++++++++++++- R/cohenG.r |only R/cohenH.r |only R/epsilonSquared.r | 9 ++++++++- R/freemanTheta.r | 7 ++++++- R/nominalSymmetryTest.r | 2 +- R/pairwiseNominalIndependence.r | 19 ++++++++++++++----- R/wilcoxonOneSampleR.r |only R/wilcoxonPairedR.r |only R/wilcoxonR.r |only data/Pennsylvania18.rda |only man/Pennsylvania18.Rd |only man/cohenG.Rd |only man/cohenH.Rd |only man/epsilonSquared.Rd | 4 ++++ man/freemanTheta.Rd | 4 ++++ man/nominalSymmetryTest.Rd | 2 +- man/pairwiseNominalIndependence.Rd | 8 ++++++-- man/wilcoxonOneSampleR.Rd |only man/wilcoxonPairedR.Rd |only man/wilcoxonR.Rd |only 24 files changed, 94 insertions(+), 27 deletions(-)
Title: Missing Value Imputation for Accelerometer Data
Description: Imputation for the missing count values in accelerometer data. The methodology includes both parametric and semi-parametric multiple imputations under the zero-inflated Poisson lognormal model. This package also provides multiple functions to pre-process the accelerometer data previous to the missing data imputation. These includes detecting wearing and non-wearing time, selecting valid days and subjects, and creating plots.
Author: Jung Ae Lee <julee@uark.edu>
Maintainer: Jung Ae Lee <jungaeleeb@gmail.com>
Diff between accelmissing versions 1.1 dated 2016-07-05 and 1.2 dated 2018-03-26
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 3 +-- R/ACCELMISSING.R | 4 ++-- data/acceldata.RData |binary data/acceldata2.RData |binary data/accelimp.RData |binary man/accelmissing-package.Rd | 8 ++++---- 8 files changed, 19 insertions(+), 20 deletions(-)
Title: Bayesian Geostatistical Modeling with RAMPS
Description: Bayesian geostatistical modeling of Gaussian processes using a reparameterized and marginalized posterior sampling (RAMPS) algorithm designed to lower autocorrelation in MCMC samples. Package performance is tuned for large spatial datasets.
Author: Brian J Smith [aut, cre],
Jun Yan [aut],
Mary Kathryn Cowles [aut]
Maintainer: Brian J Smith <brian-j-smith@uiowa.edu>
Diff between ramps versions 0.6-14 dated 2016-06-29 and 0.6-15 dated 2018-03-26
DESCRIPTION | 8 MD5 | 16 - R/DIC.R | 2 R/engine.R | 6 R/mpdensity.R | 474 ++++++++++++++++++++++++++++---------------------------- R/mpdpred.R | 384 ++++++++++++++++++++++----------------------- R/predict.R | 2 data/NURE.rda |binary data/simJSS.rda |binary 9 files changed, 446 insertions(+), 446 deletions(-)
Title: Access to Current and Historical Basketball Data
Description: Provides simple functions for accessing data/tables on
<http://www.basketball-reference.com>.
Author: Ryan Elmore [cre, aut],
Peter DeWitt [ctb]
Maintainer: Ryan Elmore <rtelmore@gmail.com>
Diff between ballr versions 0.1.1 dated 2017-11-27 and 0.2.0 dated 2018-03-26
DESCRIPTION | 8 - MD5 | 26 +-- R/nba-per-game-adv-stats.R | 15 +- R/nba-per-game-stats-per-36.R | 15 +- R/nba-per-game-stats-per-poss.R | 15 +- R/nba-per-game-stats.R | 16 +- R/nba-player-per-game-stats.R | 13 + R/nba-season-team-by-year.R | 13 + R/nba-standings-by-date.R | 17 +- build/vignette.rds |binary inst/doc/use-ballr.R | 1 inst/doc/use-ballr.Rmd | 1 inst/doc/use-ballr.html | 269 +++++++++++++++++++--------------------- vignettes/use-ballr.Rmd | 1 14 files changed, 235 insertions(+), 175 deletions(-)
Title: Tools for Antitrust Practitioners
Description: A collection of tools for antitrust practitioners, including the ability to calibrate different consumer demand systems and simulate the effects of mergers under different competitive regimes.
Author: Charles Taragin and Michael Sandfort
Maintainer: Charles Taragin <charles.taragin@usdoj.gov>
Diff between antitrust versions 0.99 dated 2018-03-08 and 0.99.5 dated 2018-03-26
antitrust-0.99.5/antitrust/DESCRIPTION | 14 antitrust-0.99.5/antitrust/MD5 | 58 antitrust-0.99.5/antitrust/NAMESPACE | 2 antitrust-0.99.5/antitrust/R/Antitrust.R | 405 +-- antitrust-0.99.5/antitrust/R/Bertrand.R | 188 + antitrust-0.99.5/antitrust/R/Cournot.R | 1910 +++++++-------- antitrust-0.99.5/antitrust/R/Stackelberg.R | 876 +++--- antitrust-0.99.5/antitrust/R/aids.R | 1185 ++++----- antitrust-0.99.5/antitrust/R/antitrust_shiny.R | 4 antitrust-0.99.5/antitrust/R/auction2ndlogit.R | 22 antitrust-0.99.5/antitrust/R/auction2ndlogitALM.R | 19 antitrust-0.99.5/antitrust/R/bert.R |only antitrust-0.99.5/antitrust/R/ces.R | 504 ++- antitrust-0.99.5/antitrust/R/cesALM.R | 363 +- antitrust-0.99.5/antitrust/R/cesNests.R | 842 +++--- antitrust-0.99.5/antitrust/R/logit.R | 904 +++---- antitrust-0.99.5/antitrust/R/logitALM.R | 383 +-- antitrust-0.99.5/antitrust/R/logitCap.R | 682 ++--- antitrust-0.99.5/antitrust/R/logitNests.R | 822 +++--- antitrust-0.99.5/antitrust/R/loglin.R | 518 ++-- antitrust-0.99.5/antitrust/R/pcaids.R | 46 antitrust-0.99.5/antitrust/inst/antitrust_shiny/server.R | 319 +- antitrust-0.99.5/antitrust/inst/antitrust_shiny/ui.R | 87 antitrust-0.99.5/antitrust/inst/doc/manual.Rnw | 6 antitrust-0.99.5/antitrust/inst/doc/manual.pdf |binary antitrust-0.99.5/antitrust/man/Bertrand-class.Rd | 2 antitrust-0.99.5/antitrust/man/Bertrand.Rd |only antitrust-0.99.5/antitrust/man/aids.Rd | 3 antitrust-0.99.5/antitrust/man/other-methods.Rd | 26 antitrust-0.99.5/antitrust/vignettes/ClassDiagram.png |only antitrust-0.99.5/antitrust/vignettes/manual.Rnw | 6 antitrust-0.99/antitrust/vignettes/ClassDiagram.pdf |only 32 files changed, 5232 insertions(+), 4964 deletions(-)
Title: Add Even More Interactivity to Interactive Charts
Description: Like package 'manipulate' does for static graphics, this package
helps to easily add controls like sliders, pickers, checkboxes, etc. that
can be used to modify the input data or the parameters of an interactive
chart created with package 'htmlwidgets'.
Author: Jalal-Edine ZAWAM [aut, cre],
Francois Guillem [aut],
RTE [cph],
JJ Allaire [ctb],
Marion Praz [ctb] (New user interface),
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Duncan Murdoch [ctb]
Maintainer: Jalal-Edine ZAWAM <jalal-edine.zawam@rte-france.com>
Diff between manipulateWidget versions 0.8.0 dated 2017-12-07 and 0.9.0 dated 2018-03-26
DESCRIPTION | 14 MD5 | 55 - NAMESPACE | 2 NEWS.md | 12 R/combine_widgets.R | 59 + R/controller.R | 16 R/inputs.R | 1377 +++++++++++++++++++------------------ R/manipulate_widget.R | 15 R/module_ui.R | 51 - R/mw_ui.R | 41 - build/vignette.rds |binary inst/doc/manipulateWidgets.html | 18 inst/htmlwidgets/combineWidgets.js | 7 man/manipulateWidget.Rd | 4 man/mwCheckbox.Rd | 5 man/mwCheckboxGroup.Rd | 5 man/mwDate.Rd | 5 man/mwDateRange.Rd | 5 man/mwGroup.Rd | 9 man/mwModule.Rd | 9 man/mwNumeric.Rd | 5 man/mwPassword.Rd | 5 man/mwRadio.Rd | 5 man/mwSelect.Rd | 5 man/mwSelectize.Rd |only man/mwSharedValue.Rd | 5 man/mwSlider.Rd | 5 man/mwText.Rd | 5 tests/testthat/test-controller.R | 2 29 files changed, 940 insertions(+), 806 deletions(-)
More information about manipulateWidget at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-05 0.1.0
Title: Conduct Simulation Studies with a Minimal Amount of Source Code
Description: The simTool package is designed for statistical simulations that
have two components. One component generates the data and the other one
analyzes the data. The main aims of the simTool package are the reduction
of the administrative source code (mainly loops and management code for the
results) and a simple applicability of the package that allows the user to
quickly learn how to work with the simTool package. Parallel computing is
also supported. Finally, convenient functions are provided to summarize the
simulation results.
Author: Marsel Scheer [aut, cre]
Maintainer: Marsel Scheer <scheer@freescience.de>
Diff between simTool versions 1.0.3 dated 2014-10-25 and 1.1.0 dated 2018-03-26
simTool-1.0.3/simTool/NEWS |only simTool-1.0.3/simTool/inst/doc/jss.pdf |only simTool-1.0.3/simTool/inst/doc/simToolPaper.Rmd |only simTool-1.0.3/simTool/inst/doc/simToolPaper.html |only simTool-1.0.3/simTool/tests/runit.as.data.frame.evalGrid.R |only simTool-1.0.3/simTool/tests/runit.evalGrids.R |only simTool-1.0.3/simTool/tests/testAll.R |only simTool-1.0.3/simTool/vignettes/simToolPaper.Rmd |only simTool-1.1.0/simTool/DESCRIPTION | 21 simTool-1.1.0/simTool/MD5 | 68 simTool-1.1.0/simTool/NAMESPACE | 13 simTool-1.1.0/simTool/NEWS.md |only simTool-1.1.0/simTool/R/as.data.frame.evalGrid.R | 112 simTool-1.1.0/simTool/R/bind_or_combine.R |only simTool-1.1.0/simTool/R/data_grid_to_fun.R |only simTool-1.1.0/simTool/R/define_simulation.R |only simTool-1.1.0/simTool/R/evalGrids.R | 474 +- simTool-1.1.0/simTool/R/eval_tibbles.R |only simTool-1.1.0/simTool/R/expandGrid.R | 21 simTool-1.1.0/simTool/R/expand_tibble.R |only simTool-1.1.0/simTool/R/extract_fun_and_parameter.R |only simTool-1.1.0/simTool/R/flatten_results.R |only simTool-1.1.0/simTool/R/frame_simulation.R |only simTool-1.1.0/simTool/R/meanAndNormCI.R | 22 simTool-1.1.0/simTool/R/prepare_cluster.R |only simTool-1.1.0/simTool/R/prepare_summary_fun.R |only simTool-1.1.0/simTool/R/print.eval_tibbles.R |only simTool-1.1.0/simTool/R/proc_grid_to_fun.R |only simTool-1.1.0/simTool/R/progress_bar.R |only simTool-1.1.0/simTool/R/simTool-package.R | 66 simTool-1.1.0/simTool/R/unnest_simulation.R |only simTool-1.1.0/simTool/build/vignette.rds |binary simTool-1.1.0/simTool/inst/doc/simTool.R | 430 + simTool-1.1.0/simTool/inst/doc/simTool.Rmd | 632 +- simTool-1.1.0/simTool/inst/doc/simTool.html | 2907 +++++++++---- simTool-1.1.0/simTool/man/as.data.frame.evalGrid.Rd | 11 simTool-1.1.0/simTool/man/evalGrids.Rd | 17 simTool-1.1.0/simTool/man/eval_tibbles.Rd |only simTool-1.1.0/simTool/man/expandGrid.Rd | 12 simTool-1.1.0/simTool/man/expand_tibble.Rd |only simTool-1.1.0/simTool/man/meanAndNormCI.Rd | 5 simTool-1.1.0/simTool/man/print.eval_tibbles.Rd |only simTool-1.1.0/simTool/man/simTool-package.Rd | 21 simTool-1.1.0/simTool/tests/testthat |only simTool-1.1.0/simTool/tests/testthat.R |only simTool-1.1.0/simTool/vignettes/simTool.Rmd | 632 +- 46 files changed, 3599 insertions(+), 1865 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-02 1.3.6
2016-12-28 1.3.5
2016-09-28 1.3.0
2016-09-10 1.2.2
2015-09-19 1.2.0
2014-11-04 1.0.122.1
2014-03-24 1.0.122.0
2014-03-10 0.0.105
2014-03-05 0.0.100
2014-02-23 0.0.91
2014-02-22 0.0.90
2014-02-19 0.0.82
2014-01-24 0.0.81
2013-12-08 0.0.80
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-09 0.2
2015-03-22 0.1-1
2015-03-17 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-12 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-02 1.3.6
2016-12-28 1.3.5
2016-09-28 1.3.0
2016-09-10 1.2.1
2015-09-19 1.2.0
2014-11-05 1.0.123.1
2014-03-25 1.0.123.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-02 2.3.6
2016-12-28 2.3.5
2016-09-28 2.3.0
2016-09-10 2.2.1
2015-09-19 2.2.0
2014-11-05 2.0.125.1
2014-03-26 2.0.125.0
2014-03-25 2.0.123.0
2014-02-19 0.1.7
2013-12-07 0.1.6
2013-11-18 0.1.05
2013-06-01 0.1.4
2013-05-27 0.1.3
2013-05-25 0.1.2
2013-05-24 0.1.1
Title: Analysis of Variance for Univariate and Multivariate Functional
Data
Description: Performs analysis of variance testing procedures for univariate and multivariate functional data (Cuesta-Albertos and Febrero-Bande (2010) <doi:10.1007/s11749-010-0185-3>, Gorecki and Smaga (2015) <doi:10.1007/s00180-015-0555-0>, Gorecki and Smaga (2017) <doi:10.1080/02664763.2016.1247791>, Zhang et al. (2016) <arXiv:1309.7376v1>).
Author: Tomasz Gorecki, Lukasz Smaga
Maintainer: Lukasz Smaga <ls@amu.edu.pl>
Diff between fdANOVA versions 0.1.0 dated 2017-09-08 and 0.1.1 dated 2018-03-26
fdANOVA-0.1.0/fdANOVA/vignettes/Fig3.pdf |only fdANOVA-0.1.0/fdANOVA/vignettes/Fig4.pdf |only fdANOVA-0.1.1/fdANOVA/DESCRIPTION | 6 fdANOVA-0.1.1/fdANOVA/MD5 | 24 - fdANOVA-0.1.1/fdANOVA/R/fanova_tests.R | 24 - fdANOVA-0.1.1/fdANOVA/R/fmanova_trp.R | 362 +++++++++++++++++----------- fdANOVA-0.1.1/fdANOVA/R/plot_fanovatests.R | 6 fdANOVA-0.1.1/fdANOVA/R/plot_fmanovatrp.R | 10 fdANOVA-0.1.1/fdANOVA/build/vignette.rds |binary fdANOVA-0.1.1/fdANOVA/inst/doc/fdANOVA.Rnw | 342 ++++---------------------- fdANOVA-0.1.1/fdANOVA/inst/doc/fdANOVA.pdf |binary fdANOVA-0.1.1/fdANOVA/vignettes/Fig2.pdf |binary fdANOVA-0.1.1/fdANOVA/vignettes/fdANOVA.Rnw | 342 ++++---------------------- fdANOVA-0.1.1/fdANOVA/vignettes/fdANOVA.bib | 4 14 files changed, 391 insertions(+), 729 deletions(-)
Title: Univariate Feature Selection and Compound Covariate for
Predicting Survival
Description: Univariate feature selection and compound covariate methods under the Cox model with high-dimensional features (gene expressions).
Available are survival data for non-small-cell lung cancer patients with gene expressions (Chen et al 2007 New Engl J Med) <DOI:10.1056/NEJMoa060096>,
statistical methods in Emura et al (2012 PLoS ONE) <DOI:10.1371/journal.pone.0047627>,
Emura & Chen (2016 Stat Methods Med Res) <DOI:10.1177/0962280214533378>, and Emura et al. (2018-)<submitted>.
Algorithms for generating correlated gene expressions are also available.
Author: Takeshi Emura, Hsuan-Yu Chen, Shigeyuki Matsui, Yi-Hau Chen
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between compound.Cox versions 3.9 dated 2018-03-16 and 3.10 dated 2018-03-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/uni.selection.R | 6 ++++-- man/compound.Cox-package.Rd | 4 ++-- man/uni.selection.Rd | 3 ++- 5 files changed, 16 insertions(+), 13 deletions(-)
Title: 'Lex' and 'Yacc'
Description: R implementation of the common parsing tools 'lex' and 'yacc'.
Author: Marek Jagielski [aut, cre, cph],
David M. Beazley [aut, cph],
Yasutaka Tanaka [ctb]
Maintainer: Marek Jagielski <marek.jagielski@gmail.com>
Diff between rly versions 1.4.2 dated 2017-01-08 and 1.5 dated 2018-03-26
rly-1.4.2/rly/NEWS.md |only rly-1.4.2/rly/README.md |only rly-1.4.2/rly/demo/BASIC/parser.out |only rly-1.4.2/rly/tests/testthat/parser.out |only rly-1.5/rly/DESCRIPTION | 23 rly-1.5/rly/MD5 | 165 ++--- rly-1.5/rly/R/lex.R | 86 +- rly-1.5/rly/R/logger.R | 32 rly-1.5/rly/R/yacc.R | 660 ++++++++++---------- rly-1.5/rly/demo/BASIC/basiclexparse.R | 4 rly-1.5/rly/demo/BASIC/basinterp.R | 2 rly-1.5/rly/demo/calc.R | 4 rly-1.5/rly/man/lex.Rd | 2 rly-1.5/rly/man/yacc.Rd | 2 rly-1.5/rly/src/packagename_init.c |only rly-1.5/rly/tests/testthat/test.calclex.R | 2 rly-1.5/rly/tests/testthat/test.example.basic.R | 6 rly-1.5/rly/tests/testthat/test.lex.R | 2 rly-1.5/rly/tests/testthat/test.lex_doc1.R | 2 rly-1.5/rly/tests/testthat/test.lex_empty.R | 2 rly-1.5/rly/tests/testthat/test.lex_error1.R | 2 rly-1.5/rly/tests/testthat/test.lex_error2.R | 2 rly-1.5/rly/tests/testthat/test.lex_error3.R | 2 rly-1.5/rly/tests/testthat/test.lex_error4.R | 2 rly-1.5/rly/tests/testthat/test.lex_hedit.R | 2 rly-1.5/rly/tests/testthat/test.lex_ignore.R | 2 rly-1.5/rly/tests/testthat/test.lex_ignore2.R | 2 rly-1.5/rly/tests/testthat/test.lex_literal1.R | 2 rly-1.5/rly/tests/testthat/test.lex_literal2.R | 2 rly-1.5/rly/tests/testthat/test.lex_literal3.R | 2 rly-1.5/rly/tests/testthat/test.lex_literal4.R | 2 rly-1.5/rly/tests/testthat/test.lex_many_tokens.R | 2 rly-1.5/rly/tests/testthat/test.lex_precedence.R | 12 rly-1.5/rly/tests/testthat/test.lex_re1.R | 2 rly-1.5/rly/tests/testthat/test.lex_re2.R | 2 rly-1.5/rly/tests/testthat/test.lex_rule1.R | 2 rly-1.5/rly/tests/testthat/test.lex_rule2.R | 2 rly-1.5/rly/tests/testthat/test.lex_rule3.R | 2 rly-1.5/rly/tests/testthat/test.lex_state1.R | 2 rly-1.5/rly/tests/testthat/test.lex_state2.R | 2 rly-1.5/rly/tests/testthat/test.lex_state3.R | 2 rly-1.5/rly/tests/testthat/test.lex_state4.R | 2 rly-1.5/rly/tests/testthat/test.lex_state5.R | 2 rly-1.5/rly/tests/testthat/test.lex_state_noerror.R | 2 rly-1.5/rly/tests/testthat/test.lex_state_norule.R | 2 rly-1.5/rly/tests/testthat/test.lex_state_try.R | 2 rly-1.5/rly/tests/testthat/test.lex_token1.R | 2 rly-1.5/rly/tests/testthat/test.lex_token2.R | 2 rly-1.5/rly/tests/testthat/test.lex_token3.R | 2 rly-1.5/rly/tests/testthat/test.lex_token4.R | 2 rly-1.5/rly/tests/testthat/test.lex_token5.R | 2 rly-1.5/rly/tests/testthat/test.lex_token_dup.R | 2 rly-1.5/rly/tests/testthat/test.pkg_test1.R | 4 rly-1.5/rly/tests/testthat/test.yacc_badargs.R | 4 rly-1.5/rly/tests/testthat/test.yacc_badid.R | 12 rly-1.5/rly/tests/testthat/test.yacc_badprec.R | 2 rly-1.5/rly/tests/testthat/test.yacc_badprec2.R | 2 rly-1.5/rly/tests/testthat/test.yacc_badprec3.R | 2 rly-1.5/rly/tests/testthat/test.yacc_badrule.R | 25 rly-1.5/rly/tests/testthat/test.yacc_badtok.R | 2 rly-1.5/rly/tests/testthat/test.yacc_error1.R | 2 rly-1.5/rly/tests/testthat/test.yacc_error2.R | 2 rly-1.5/rly/tests/testthat/test.yacc_error3.R | 2 rly-1.5/rly/tests/testthat/test.yacc_error4.R | 6 rly-1.5/rly/tests/testthat/test.yacc_error5.R | 4 rly-1.5/rly/tests/testthat/test.yacc_error6.R | 4 rly-1.5/rly/tests/testthat/test.yacc_inf.R | 2 rly-1.5/rly/tests/testthat/test.yacc_literal.R | 6 rly-1.5/rly/tests/testthat/test.yacc_misplaced.R | 6 rly-1.5/rly/tests/testthat/test.yacc_missing1.R | 2 rly-1.5/rly/tests/testthat/test.yacc_nested.R | 20 rly-1.5/rly/tests/testthat/test.yacc_nodoc.R | 2 rly-1.5/rly/tests/testthat/test.yacc_noerror.R | 2 rly-1.5/rly/tests/testthat/test.yacc_nop.R | 2 rly-1.5/rly/tests/testthat/test.yacc_notfunc.R | 2 rly-1.5/rly/tests/testthat/test.yacc_notok.R | 2 rly-1.5/rly/tests/testthat/test.yacc_prec1.R | 2 rly-1.5/rly/tests/testthat/test.yacc_rr.R | 2 rly-1.5/rly/tests/testthat/test.yacc_rr_unused.R | 2 rly-1.5/rly/tests/testthat/test.yacc_simple.R | 2 rly-1.5/rly/tests/testthat/test.yacc_sr.R | 2 rly-1.5/rly/tests/testthat/test.yacc_term1.R | 6 rly-1.5/rly/tests/testthat/test.yacc_unused.R | 4 rly-1.5/rly/tests/testthat/test.yacc_unused_rule.R | 2 rly-1.5/rly/tests/testthat/test.yacc_uprec.R | 6 rly-1.5/rly/tests/testthat/test.yacc_uprec2.R | 6 86 files changed, 633 insertions(+), 588 deletions(-)
Title: Hierarchical and Grouped Time Series
Description: Provides methods for analysing and forecasting hierarchical and
grouped time series. The available forecast methods include bottom-up,
top-down, optimal combination reconciliation (Hyndman et al. 2011)
<doi:10.1016/j.csda.2011.03.006>, and trace minimization reconciliation
(Wickramasuriya et al. 2018) <doi:10.1080/01621459.2018.1448825>.
Author: Rob Hyndman [aut] (Package creator),
Alan Lee [aut] (Fast computation using recursive methods),
Earo Wang [aut, cre],
Shanika Wickramasuriya [aut] (Reconciliation via trace minimization)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between hts versions 5.1.4 dated 2017-06-21 and 5.1.5 dated 2018-03-26
DESCRIPTION | 29 ++++++++++++++++------------- MD5 | 38 +++++++++++++++++++------------------- NEWS.md | 35 +++++++++++++++++++++-------------- R/RcppExports.R | 2 +- R/gts.R | 8 ++++++-- R/hts-package.R | 15 ++++++--------- R/smatrix.R | 2 +- README.md | 47 ++++++++++++++++++++++++++--------------------- build/vignette.rds |binary inst/doc/hts.pdf |binary man/figure/gts-eg-1.png |binary man/figure/gts-eg-2.png |binary man/figure/gts-eg-3.png |binary man/figure/hts-eg1-1.png |binary man/figure/hts-eg1-2.png |binary man/figure/hts-eg1-3.png |binary man/figure/hts-eg2-1.png |binary man/figure/hts-eg2-2.png |binary man/hts-package.Rd | 19 +++++++++---------- src/RcppExports.cpp | 4 ++-- 20 files changed, 107 insertions(+), 92 deletions(-)
Title: Models for Skewed Count Distributions Relevant to Networks
Description: Likelihood-based inference for skewed count distributions used in network modeling. "degreenet" is a part of the "statnet" suite of packages for network analysis.
Author: Mark S. Handcock <handcock@stat.ucla.edu>
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between degreenet versions 1.3-1 dated 2015-04-19 and 1.3-3 dated 2018-03-26
DESCRIPTION | 10 - LICENSE | 25 +--- MD5 | 23 ++-- NAMESPACE | 3 R/cmp.R | 8 - R/cmp.natural.R | 2 R/degreenet.R | 290 +++++++++++++++++++++++++-------------------------- R/groupedmodels.R | 78 ++++++------- R/mands.R | 10 - R/poissonlognormal.R | 8 - inst/CITATION | 4 src/R_init.c |only src/cmp.c | 2 13 files changed, 231 insertions(+), 232 deletions(-)
Title: Australian Government Bureau of Meteorology Data from R
Description: Provides functions to interface with Australian Government Bureau
of Meteorology (BOM) data, fetching data and returning a tidy data frame of
précis forecasts, current weather data from stations, agriculture
bulletin data, BOM 0900 or 1500 weather bulletins or a raster stack object
of satellite imagery from GeoTIFF files. Data (c) Australian Government
Bureau of Meteorology Creative Commons (CC) Attribution 3.0 licence or
Public Access Licence (PAL) as appropriate. See
<http://www.bom.gov.au/other/copyright.shtml> for further details.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Mark Padgham [aut, rev] (<https://orcid.org/0000-0003-2172-5265>),
Hugh Parsonage [aut] (<https://orcid.org/0000-0003-4055-0835>),
Keith Pembleton [aut] (<https://orcid.org/0000-0002-1896-4516>),
James Balamuta [ctb] (<https://orcid.org/0000-0003-2826-8458>),
Brooke Anderson [rev] (<https://orcid.org/0000-0002-5012-9035>)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between bomrang versions 0.1.1 dated 2017-12-15 and 0.1.4 dated 2018-03-26
DESCRIPTION | 40 MD5 | 82 - NEWS.md | 69 + R/bomrang.r | 2 R/get_ag_bulletin.R | 15 R/get_current_weather.R | 10 R/get_precis_forecast.R | 12 R/get_satellite_imagery.R | 24 R/get_weather_bulletins.R | 13 R/internal_functions.R | 5 R/manage_cached_files.R | 2 R/sweep_for_stations.R | 2 R/update_forecast_towns.R | 14 R/update_station_locations.R | 117 +- README.md | 32 build/vignette.rds |binary inst/doc/bomrang.R | 36 inst/doc/bomrang.Rmd | 85 -- inst/doc/bomrang.html | 389 ++------- inst/doc/use_case.R | 5 inst/doc/use_case.Rmd | 5 inst/doc/use_case.html | 116 -- inst/extdata/AAC_codes.rda |binary inst/extdata/JSONurl_site_list.rda |binary inst/extdata/stations_site_list.rda |binary inst/vector/bomrang-hex.svg | 1056 ------------------------- man/bomrang.Rd | 4 man/get_ag_bulletin.Rd | 12 man/get_available_imagery.Rd | 10 man/get_current_weather.Rd | 8 man/get_precis_forecast.Rd | 12 man/get_satellite_imagery.Rd | 12 man/get_weather_bulletin.Rd | 6 man/manage_cache.Rd | 2 man/sweep_for_stations.Rd | 4 man/update_forecast_towns.Rd | 10 man/update_station_locations.Rd | 15 tests/testthat/test-get_ag_bulletin.R | 7 tests/testthat/test-get_current_weather.R | 5 tests/testthat/test-update_station_locations.R | 99 +- vignettes/bomrang.Rmd | 85 -- vignettes/use_case.Rmd | 5 42 files changed, 673 insertions(+), 1754 deletions(-)
Title: Tools for Building OLS Regression Models
Description: Tools for building OLS regression models . Includes
comprehensive regression output, heteroskedasticity tests, collinearity diagnostics,
residual diagnostics, measures of influence, model fit assessment and variable selection procedures.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between olsrr versions 0.4.0 dated 2017-12-05 and 0.5.0 dated 2018-03-26
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changed, 14632 insertions(+), 10068 deletions(-)
Title: Boltzmann Machines with MM Algorithms
Description: Provides probability computation, data generation,
and model estimation for fully-visible Boltzmann machines. It follows the methods
described in Nguyen and Wood (2016a) <doi:10.1162/NECO_a_00813>
and Nguyen and Wood (2016b) <doi:10.1109/TNNLS.2015.2425898>.
Author: Andrew Thomas Jones, Hien Duy Ngyuen
Maintainer: Andrew Thomas Jones <andrewthomasjones@gmail.com>
Diff between BoltzMM versions 0.1.0 dated 2018-03-19 and 0.1.1 dated 2018-03-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 3 +++ R/RcppExports.R | 2 +- man/allpfvbm.Rd | 2 +- src/BoltzMM.cpp | 12 ++++++------ 6 files changed, 20 insertions(+), 17 deletions(-)
Title: Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Description: Tools to analyze the embryo growth and the sexualisation thermal reaction norms.
Author: Marc Girondot <marc.girondot@u-psud.fr>
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between embryogrowth versions 7.1 dated 2017-11-23 and 7.4 dated 2018-03-26
embryogrowth-7.1/embryogrowth/R/TestParallel.R |only embryogrowth-7.1/embryogrowth/man/TestParallel.Rd |only embryogrowth-7.4/embryogrowth/DESCRIPTION | 10 - embryogrowth-7.4/embryogrowth/MD5 | 72 ++++++----- embryogrowth-7.4/embryogrowth/NAMESPACE | 10 + embryogrowth-7.4/embryogrowth/NEWS | 22 +++ embryogrowth-7.4/embryogrowth/R/DatabaseTSD.R | 5 embryogrowth-7.4/embryogrowth/R/HatchingSuccess.fitHS.R |only embryogrowth-7.4/embryogrowth/R/HatchingSuccess.logLik.R |only embryogrowth-7.4/embryogrowth/R/HatchingSuccess.modelHS.R |only embryogrowth-7.4/embryogrowth/R/HatchingSuccess.nobs.R |only embryogrowth-7.4/embryogrowth/R/HatchingSuccess.predict.R |only embryogrowth-7.4/embryogrowth/R/HatchingSuccesss.lnLHS.R |only embryogrowth-7.4/embryogrowth/R/MovingIncubation.R | 26 +++ embryogrowth-7.4/embryogrowth/R/P_TRT.R | 1 embryogrowth-7.4/embryogrowth/R/STRN.R | 25 +++ embryogrowth-7.4/embryogrowth/R/STRN_fit.R | 11 - embryogrowth-7.4/embryogrowth/R/calibrate.datalogger.R |only embryogrowth-7.4/embryogrowth/R/embryogrowth-package.R | 17 ++ embryogrowth-7.4/embryogrowth/R/fonctionSTRNMCMC.R | 1 embryogrowth-7.4/embryogrowth/R/info.nests.R | 27 +++- embryogrowth-7.4/embryogrowth/R/plot.NestsResult.R | 23 +++ embryogrowth-7.4/embryogrowth/R/plotR.R | 5 embryogrowth-7.4/embryogrowth/R/precision.datalogger.R |only embryogrowth-7.4/embryogrowth/R/searchR.R | 12 - embryogrowth-7.4/embryogrowth/R/test.parallel.R |only embryogrowth-7.4/embryogrowth/R/weightmaxentropy.R | 3 embryogrowth-7.4/embryogrowth/data/DatabaseNestingArea.rda |binary embryogrowth-7.4/embryogrowth/data/DatabaseTSD.rda |binary embryogrowth-7.4/embryogrowth/data/TSP.list.rda |binary embryogrowth-7.4/embryogrowth/data/stages.rda |binary embryogrowth-7.4/embryogrowth/man/DatabaseTSD.Rd | 8 + embryogrowth-7.4/embryogrowth/man/MovingIncubation.Rd | 7 - embryogrowth-7.4/embryogrowth/man/STRN.Rd | 16 ++ embryogrowth-7.4/embryogrowth/man/calibrate.datalogger.Rd |only embryogrowth-7.4/embryogrowth/man/embryogrowth-package.Rd | 20 ++- embryogrowth-7.4/embryogrowth/man/fitHS.Rd |only embryogrowth-7.4/embryogrowth/man/info.nests.Rd | 22 ++- embryogrowth-7.4/embryogrowth/man/lnLHS.Rd |only embryogrowth-7.4/embryogrowth/man/logLik.HatchingSuccess.Rd |only embryogrowth-7.4/embryogrowth/man/modelHS.Rd |only embryogrowth-7.4/embryogrowth/man/nobs.HatchingSuccess.Rd |only embryogrowth-7.4/embryogrowth/man/plot.NestsResult.Rd | 17 ++ embryogrowth-7.4/embryogrowth/man/precision.datalogger.Rd |only embryogrowth-7.4/embryogrowth/man/predict.HatchingSuccess.Rd |only embryogrowth-7.4/embryogrowth/man/searchR.Rd | 12 - embryogrowth-7.4/embryogrowth/man/test.parallel.Rd |only 47 files changed, 287 insertions(+), 85 deletions(-)
Title: Projecting Satellite-Derived Phenology in Space
Description: This tool projects annual phenology metrics and long-term phenology trends, following methodologies described in John (2016) <https://etda.libraries.psu.edu/catalog/13521clj5135>.
Author: Christian John [aut, cre]
Maintainer: Christian John <cjohn@ucdavis.edu>
Diff between phenomap versions 1.2.0 dated 2018-02-20 and 1.2.1 dated 2018-03-26
DESCRIPTION | 10 ++++----- MD5 | 10 ++++----- NAMESPACE | 1 NEWS.md | 6 +++++ R/mapPheno.R | 57 ++++++++++++++++++++++++++++---------------------------- man/mapPheno.Rd | 22 --------------------- 6 files changed, 46 insertions(+), 60 deletions(-)
Title: Orthogonalizing EM: Penalized Regression for Big Tall Data
Description: Solves penalized least squares problems for big tall data
using the orthogonalizing EM algorithm of Xiong et al. (2016)
<doi:10.1080/00401706.2015.1054436>. The main fitting function is oem() and the
functions cv.oem() and xval.oem() are for cross validation, the latter being an
accelerated cross validation function for linear models. The big.oem() function
allows for out of memory fitting.
Author: Bin Dai [aut],
Jared Huling [aut, cre],
Yixuan Qiu [ctb],
Gael Guennebaud [cph],
Jitse Niesen [cph]
Maintainer: Jared Huling <jaredhuling@gmail.com>
Diff between oem versions 2.0.7 dated 2018-02-01 and 2.0.8 dated 2018-03-26
DESCRIPTION | 16 MD5 | 13 README.md | 216 ++++------ inst/CITATION |only inst/doc/oem_vignette.Rmd | 56 -- inst/doc/oem_vignette.html | 888 ++++++++++++++++++++++++++++++--------------- vignettes/mult-1.png |binary vignettes/oem_vignette.Rmd | 56 -- 8 files changed, 738 insertions(+), 507 deletions(-)