Title: Friendly R Startup Configuration
Description: Adds support for R startup configuration via '.Renviron.d' and '.Rprofile.d' directories in addition to '.Renviron' and '.Rprofile' files. This makes it possible to keep private / secret environment variables separate from other environment variables. It also makes it easier to share specific startup settings by simply copying a file to a directory.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between startup versions 0.9.0 dated 2018-01-10 and 0.10.0 dated 2018-03-30
startup-0.10.0/startup/DESCRIPTION | 6 startup-0.10.0/startup/MD5 | 53 +++--- startup-0.10.0/startup/NAMESPACE | 1 startup-0.10.0/startup/NEWS | 132 +++++++++++------ startup-0.10.0/startup/R/check.R | 2 startup-0.10.0/startup/R/debug.R | 39 +++-- startup-0.10.0/startup/R/files_apply.R | 18 ++ startup-0.10.0/startup/R/filter_files.R | 24 ++- startup-0.10.0/startup/R/find_files.R | 11 - startup-0.10.0/startup/R/is_ess.R | 2 startup-0.10.0/startup/R/is_microsoftr.R |only startup-0.10.0/startup/R/is_pqr.R |only startup-0.10.0/startup/R/is_rstudio.R | 11 + startup-0.10.0/startup/R/is_rtichoke.R |only startup-0.10.0/startup/R/restart.R | 72 +++++++-- startup-0.10.0/startup/R/rprofile_d.R | 5 startup-0.10.0/startup/R/startup.R | 12 + startup-0.10.0/startup/R/sysinfo.R | 12 + startup-0.10.0/startup/README.md | 49 +++++- startup-0.10.0/startup/build/vignette.rds |binary startup-0.10.0/startup/inst/.Renviron.d/secrets=banana |only startup-0.10.0/startup/inst/doc/startup-intro.html | 35 +++- startup-0.10.0/startup/inst/doc/startup-intro.md | 49 +++++- startup-0.10.0/startup/man/is_debug_on.Rd |only startup-0.10.0/startup/man/is_microsoftr.Rd |only startup-0.10.0/startup/man/is_pqr.Rd |only startup-0.10.0/startup/man/is_rstudio_console.Rd |only startup-0.10.0/startup/man/is_rtichoke.Rd |only startup-0.10.0/startup/man/restart.Rd | 21 +- startup-0.10.0/startup/tests/debug.R | 8 - startup-0.10.0/startup/vignettes/startup-intro.md | 49 +++++- startup-0.9.0/startup/R/is_rice.R |only startup-0.9.0/startup/inst/.Renviron.d/libs |only startup-0.9.0/startup/inst/.Renviron.d/secrets |only startup-0.9.0/startup/man/is_rice.Rd |only startup-0.9.0/startup/man/is_rstudio.Rd |only 36 files changed, 465 insertions(+), 146 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting including the introduced here Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics and a built-in help system. A confirmatory factor analysis of multiple indicator measurement models is available, as are pedagogical routines for data simulation such as for the Central Limit Theorem. Compatible with 'RStudio' and 'knitr' including generation of R markdown instructions for interpretative output.
Author: David W. Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 3.7.0 dated 2018-01-05 and 3.7.2 dated 2018-03-30
lessR-3.7.0/lessR/R/showWheel.R |only lessR-3.7.0/lessR/man/showWheel.Rd |only lessR-3.7.2/lessR/DESCRIPTION | 12 lessR-3.7.2/lessR/MD5 | 104 - lessR-3.7.2/lessR/NAMESPACE | 8 lessR-3.7.2/lessR/NEWS | 107 + lessR-3.7.2/lessR/R/BarChart.R | 53 lessR-3.7.2/lessR/R/Density.R | 5 lessR-3.7.2/lessR/R/Histogram.R | 28 lessR-3.7.2/lessR/R/LineChart.R | 5 lessR-3.7.2/lessR/R/Model.R | 20 lessR-3.7.2/lessR/R/PieChart.R | 74 lessR-3.7.2/lessR/R/Plot.R | 140 - lessR-3.7.2/lessR/R/Read.R | 86 lessR-3.7.2/lessR/R/ScatterPlot.R | 6 lessR-3.7.2/lessR/R/SummaryStats.R | 19 lessR-3.7.2/lessR/R/VariableLabels.R | 29 lessR-3.7.2/lessR/R/ViolinPlot.R |only lessR-3.7.2/lessR/R/Write.R | 48 lessR-3.7.2/lessR/R/bar.zlattice.R | 42 lessR-3.7.2/lessR/R/bc.data.frame.R | 30 lessR-3.7.2/lessR/R/bc.zmain.R | 144 - lessR-3.7.2/lessR/R/details.R | 13 lessR-3.7.2/lessR/R/dn.zmain.R | 11 lessR-3.7.2/lessR/R/getColors.R |only lessR-3.7.2/lessR/R/hst.zmain.R | 55 lessR-3.7.2/lessR/R/lc.zmain.R | 43 lessR-3.7.2/lessR/R/param.zold.R | 14 lessR-3.7.2/lessR/R/pc.zmain.R | 225 +- lessR-3.7.2/lessR/R/plt.zVBS.R | 23 lessR-3.7.2/lessR/R/plt.zlattice.R | 33 lessR-3.7.2/lessR/R/plt.zmain.R | 28 lessR-3.7.2/lessR/R/plt.zmat.R | 4 lessR-3.7.2/lessR/R/plt.ztxt.R | 2 lessR-3.7.2/lessR/R/showColors.R | 5 lessR-3.7.2/lessR/R/sp.R | 2 lessR-3.7.2/lessR/R/style.R | 82 lessR-3.7.2/lessR/R/style.zshow.R | 4 lessR-3.7.2/lessR/R/tt.z1graph.R | 12 lessR-3.7.2/lessR/R/tt.z1group.R | 23 lessR-3.7.2/lessR/R/tt.z2graph.R | 4 lessR-3.7.2/lessR/R/tt.z2group.R | 17 lessR-3.7.2/lessR/R/ttest.R | 14 lessR-3.7.2/lessR/R/vp.R |only lessR-3.7.2/lessR/R/zzz.R | 3627 +++++++++++++++++------------------ lessR-3.7.2/lessR/man/BarChart.Rd | 862 ++++---- lessR-3.7.2/lessR/man/Histogram.Rd | 75 lessR-3.7.2/lessR/man/Model.Rd | 3 lessR-3.7.2/lessR/man/PieChart.Rd | 258 +- lessR-3.7.2/lessR/man/Plot.Rd | 1826 ++++++++--------- lessR-3.7.2/lessR/man/Read.Rd | 15 lessR-3.7.2/lessR/man/Write.Rd | 13 lessR-3.7.2/lessR/man/details.Rd | 4 lessR-3.7.2/lessR/man/getColors.Rd |only lessR-3.7.2/lessR/man/style.Rd | 40 lessR-3.7.2/lessR/man/ttest.Rd | 3 56 files changed, 4451 insertions(+), 3849 deletions(-)
Title: Algorithms for Finding Fixed Point Vectors of Functions
Description: For functions that take and return vectors (or scalars), this package provides 8 algorithms for finding fixed point vectors (vectors for which the inputs and outputs to the function are the same vector). These algorithms include Anderson (1965) acceleration <doi:10.1145/321296.321305>, epsilon extrapolation methods (Wynn 1962 <doi:10.2307/2004051>) and minimal polynomial methods (Cabay and Jackson 1976 <doi:10.1137/0713060>).
Author: Stuart Baumann & Margaryta Klymak
Maintainer: Stuart Baumann <Stuart@StuartBaumann.com>
Diff between FixedPoint versions 0.3 dated 2018-03-22 and 0.4 dated 2018-03-30
FixedPoint-0.3/FixedPoint/man/NicePrint.Rd |only FixedPoint-0.4/FixedPoint/DESCRIPTION | 6 FixedPoint-0.4/FixedPoint/MD5 | 28 FixedPoint-0.4/FixedPoint/R/Figures.R | 19 FixedPoint-0.4/FixedPoint/R/MainFunctions.R | 140 FixedPoint-0.4/FixedPoint/inst/doc/FixedPoint.Rmd | 24 FixedPoint-0.4/FixedPoint/inst/doc/FixedPoint.pdf | 1968 ++++------ FixedPoint-0.4/FixedPoint/man/FixedPoint.Rd | 14 FixedPoint-0.4/FixedPoint/man/FixedPointNewInput.Rd | 8 FixedPoint-0.4/FixedPoint/man/PutTogetherIteratesWithoutJumps.Rd | 3 FixedPoint-0.4/FixedPoint/tests/testthat/Rplots.pdf |only FixedPoint-0.4/FixedPoint/tests/testthat/test_Babylon.R | 2 FixedPoint-0.4/FixedPoint/tests/testthat/test_PushThroughErrors.R | 2 FixedPoint-0.4/FixedPoint/vignettes/Bibliography.bib | 4 FixedPoint-0.4/FixedPoint/vignettes/FixedPoint.Rmd | 24 FixedPoint-0.4/FixedPoint/vignettes/FixedPoint.html |only FixedPoint-0.4/FixedPoint/vignettes/FixedPoint.md |only 17 files changed, 1120 insertions(+), 1122 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Functions for simulating and testing particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometric theory as well as publications in personality research. For more information, see the <https://personality-project.org/r> web page.
Author: William Revelle [aut, cre] (<https://orcid.org/0000-0003-4880-9610>)
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 1.7.8 dated 2017-09-09 and 1.8.3.3 dated 2018-03-30
DESCRIPTION | 19 - MD5 | 423 ++++++++++++++++++++------------------ NAMESPACE | 12 - R/ICC.R | 93 +++++++- R/alpha.R | 30 ++ R/auc.r |only R/bestScale.R | 165 +++++++++++++-- R/bi.bars.R | 15 + R/cor.ci.R | 8 R/cor.plot.R | 10 R/corr.test.R | 15 - R/densityBy.r | 93 +++++++- R/describe.R | 49 +++- R/df2latex.R | 14 - R/diagram.R | 15 + R/dummy.code.R | 7 R/error.bars.R | 6 R/error.bars.by.R | 2 R/error.dots.r | 33 ++- R/esem.R | 2 R/fa.R | 6 R/fa.extension.R | 4 R/fa.parallel.R | 4 R/kappa.R | 23 +- R/makerepeated.r |only R/mat.regress.R | 75 ------ R/mediate.r | 457 ++++++++++++++++++++++++++---------------- R/misc.R | 50 ---- R/mixed.cor.R | 238 +++++++++++++-------- R/multilevel.reliability.R | 4 R/omega.sem.R | 4 R/paired.r.R | 2 R/pairs.panels.R | 7 R/polychoric.R | 51 +++- R/print.psych.R | 98 +++++---- R/print.psych.fa.R | 19 - R/read.clipboard.R | 46 ++-- R/reverse.code.R | 3 R/score.items.R | 3 R/set.cor.R | 177 +++++++++++++--- R/sim.item.R | 24 +- R/sim.structural.R | 22 +- R/splitHalf.R | 18 - R/statsBy.r | 10 R/summary.psych.R | 3 R/test.all.R | 8 R/test.psych.r | 1 R/testRetest.r |only R/utlilites.r |only build/vignette.rds |binary data/Bechtoldt.1.rda |binary data/Bechtoldt.2.rda |binary data/Bechtoldt.rda |binary data/Dwyer.rda |binary data/GSBE.rda |only data/Gleser.rda |binary data/Gorsuch.rda |binary data/Harman.5.rda |binary data/Harman.8.rda |binary data/Harman.political.rda |binary data/Harman.rda |binary data/Holzinger.9.rda |binary data/Holzinger.rda |binary data/Reise.rda |binary data/Schmid.rda |binary data/Schutz.rda |binary data/Tal_Or.rda |only data/Thurstone.33.rda |binary data/Thurstone.9.rda |only data/Thurstone.rda |binary data/Tucker.rda |binary data/ability.rda |binary data/affect.rda |binary data/bfi.dictionary.rda |binary data/bfi.rda |binary data/blant.rda |binary data/blot.rda |binary data/bock.rda |binary data/burt.rda |binary data/cattell.rda |binary data/cities.rda |binary data/cubits.rda |binary data/cushny.rda |binary data/epi.bfi.rda |binary data/epi.dictionary.rda |binary data/epi.rda |binary data/epiR.rda |only data/galton.rda |binary data/heights.rda |binary data/income.rda |binary data/iqitems.rda |binary data/msq.rda |binary data/msqR.rda |only data/neo.rda |binary data/peas.rda |binary data/sai.dictionary.rda |only data/sai.rda |only data/sat.act.rda |binary data/spi.dictionary.rda |binary data/spi.keys.rda |binary data/spi.rda |binary data/tai.rda |only data/vegetables.rda |binary data/withinBetween.rda |binary inst/CITATION | 8 inst/NEWS.Rd | 124 +++++++++-- inst/doc/intro.R | 100 +++++---- inst/doc/intro.Rnw | 184 ++++++++++++---- inst/doc/intro.pdf |binary inst/doc/overview.R | 141 ++++++------ inst/doc/overview.Rnw | 209 ++++++++++--------- inst/doc/overview.pdf |binary inst/doc/psych_for_sem.Rnw | 2 inst/doc/psych_for_sem.pdf |binary man/00.psych-package.Rd | 14 - man/AUC.Rd |only man/Garcia.Rd |only man/Harman.Rd | 2 man/ICC.Rd | 36 ++- man/ICLUST.Rd | 12 - man/ICLUST.cluster.Rd | 4 man/ICLUST.graph.Rd | 10 man/ICLUST.rgraph.Rd | 8 man/ICLUST.sort.Rd | 2 man/VSS.Rd | 6 man/VSS.plot.Rd | 4 man/VSS.scree.Rd | 2 man/ability.Rd | 6 man/alpha.Rd | 20 + man/best.scales.Rd | 21 + man/bfi.Rd | 4 man/bi.bars.Rd | 11 - man/bifactor.Rd | 7 man/block.random.Rd | 2 man/blot.Rd | 2 man/burt.Rd | 4 man/circ.tests.Rd | 2 man/cities.Rd | 2 man/cluster.cor.Rd | 2 man/cluster.fit.Rd | 2 man/cluster.loadings.Rd | 6 man/comorbidity.Rd | 3 man/cor.ci.Rd | 7 man/cor.plot.Rd | 16 + man/cor2dist.Rd | 2 man/corr.test.Rd | 7 man/correct.cor.Rd | 2 man/cta.Rd | 6 man/densityBy.Rd | 35 +-- man/deprecated.Rd | 2 man/describe.Rd | 34 ++- man/dfOrder.Rd | 15 - man/diagram.Rd | 2 man/dummy.code.Rd | 5 man/eigen.loadings.Rd | 2 man/epi.Rd | 177 +++++++++------- man/epi.bfi.Rd | 2 man/error.bars.Rd | 8 man/error.bars.by.Rd | 2 man/error.crosses.Rd | 2 man/error.dots.Rd | 25 +- man/esem.Rd | 7 man/fa.Rd | 4 man/fa.parallel.Rd | 2 man/faMulti.Rd | 2 man/factor.congruence.Rd | 4 man/factor.model.Rd | 4 man/factor.rotate.Rd | 2 man/factor.scores.Rd | 10 man/factor2cluster.Rd | 4 man/fileUtilities.Rd |only man/glb.algebraic.Rd | 2 man/guttman.Rd | 10 man/income.Rd | 2 man/iqitems.Rd | 4 man/irt.fa.Rd | 2 man/irt.responses.Rd | 2 man/kappa.Rd | 10 man/lowerUpper.Rd | 14 + man/make.keys.Rd | 8 man/mediate.Rd | 96 +++++--- man/mixed.cor.Rd | 22 +- man/msq.Rd | 6 man/msqR.rd |only man/mssd.Rd | 8 man/multilevel.reliability.Rd | 6 man/omega.Rd | 16 - man/omega.graph.Rd | 12 - man/partial.r.Rd | 2 man/peas.Rd | 2 man/phi.Rd | 10 man/phi.demo.Rd | 8 man/principal.Rd | 4 man/r.test.Rd | 21 + man/range.correction.Rd | 2 man/read.clipboard.Rd | 34 ++- man/sai.Rd |only man/sat.act.Rd | 4 man/scaling.fits.Rd | 2 man/schmid.Rd | 2 man/score.alpha.Rd | 2 man/score.irt.Rd | 2 man/score.items.Rd | 6 man/score.multiple.choice.Rd | 2 man/set.cor.Rd | 63 ++++- man/sim.Rd | 22 +- man/sim.congeneric.Rd | 2 man/sim.hierarchical.Rd | 2 man/sim.item.Rd | 4 man/sim.multilevel.Rd | 2 man/sim.structural.Rd | 2 man/simulation.circ.Rd | 2 man/spi.Rd | 27 ++ man/tal_or.Rd |only man/testRetest.Rd |only man/tetrachor.Rd | 2 man/thurstone.Rd | 2 man/vegetables.Rd | 2 man/withinBetween.Rd | 2 vignettes/intro.Rnw | 184 ++++++++++++---- vignettes/overview.Rnw | 209 ++++++++++--------- vignettes/psych_for_sem.Rnw | 2 222 files changed, 2918 insertions(+), 1654 deletions(-)
Title: R Client for the 'Civis data science API'
Description: A set of tools around common workflows and a convenient interface to make
requests directly to the 'Civis data science API' <https://www.civisanalytics.com/platform/>.
Author: Patrick Miller [cre, aut],
Keith Ingersoll [aut],
Bill Lattner [ctb],
Anh Le [ctb],
Michelangelo D'Agostino [ctb],
Sam Weiss [ctb],
Stephen Hoover [ctb],
Danning Chen [ctb],
Elizabeth Sander [ctb]
Maintainer: Patrick Miller <pmiller@civisanalytics.com>
Diff between civis versions 1.2.0 dated 2018-01-23 and 1.3.0 dated 2018-03-30
civis-1.2.0/civis/man/reports_delete_solutions_shares_groups.Rd |only civis-1.2.0/civis/man/reports_delete_solutions_shares_users.Rd |only civis-1.2.0/civis/man/reports_get_solutions.Rd |only civis-1.2.0/civis/man/reports_list_solutions_shares.Rd |only civis-1.2.0/civis/man/reports_patch_solutions.Rd |only civis-1.2.0/civis/man/reports_put_solutions_shares_groups.Rd |only civis-1.2.0/civis/man/reports_put_solutions_shares_users.Rd |only civis-1.2.0/civis/man/results_delete_solutions_shares_groups.Rd |only civis-1.2.0/civis/man/results_delete_solutions_shares_users.Rd |only civis-1.2.0/civis/man/results_get_solutions.Rd |only civis-1.2.0/civis/man/results_list_solutions_shares.Rd |only civis-1.2.0/civis/man/results_patch_solutions.Rd |only civis-1.2.0/civis/man/results_put_solutions_shares_groups.Rd |only civis-1.2.0/civis/man/results_put_solutions_shares_users.Rd |only civis-1.3.0/civis/DESCRIPTION | 20 civis-1.3.0/civis/MD5 | 285 civis-1.3.0/civis/NAMESPACE | 101 civis-1.3.0/civis/R/civis_ml.R | 82 civis-1.3.0/civis/R/generate_client.R | 3 civis-1.3.0/civis/R/generated_client.R | 2870 +++++++++- civis-1.3.0/civis/R/io.R | 134 civis-1.3.0/civis/R/sysdata.rda |binary civis-1.3.0/civis/README.md | 138 civis-1.3.0/civis/build/vignette.rds |binary civis-1.3.0/civis/inst/doc/civis_ml.Rmd | 9 civis-1.3.0/civis/inst/doc/civis_ml.html | 6 civis-1.3.0/civis/inst/doc/concurrency.Rmd | 2 civis-1.3.0/civis/inst/doc/concurrency.html | 2 civis-1.3.0/civis/man/apps_get_releases.Rd |only civis-1.3.0/civis/man/apps_list_releases.Rd |only civis-1.3.0/civis/man/civis_ml.Rd | 35 civis-1.3.0/civis/man/clusters_get_kubernetes.Rd | 14 civis-1.3.0/civis/man/clusters_list_kubernetes.Rd | 14 civis-1.3.0/civis/man/clusters_list_workers_active_jobs.Rd | 1 civis-1.3.0/civis/man/clusters_list_workers_queued_jobs.Rd | 1 civis-1.3.0/civis/man/credentials_list.Rd | 2 civis-1.3.0/civis/man/credentials_post_authenticate.Rd | 2 civis-1.3.0/civis/man/download_civis.Rd | 6 civis-1.3.0/civis/man/enhancements_delete_person_matching_runs.Rd |only civis-1.3.0/civis/man/enhancements_get_person_matching.Rd |only civis-1.3.0/civis/man/enhancements_get_person_matching_runs.Rd |only civis-1.3.0/civis/man/enhancements_list_cass_ncoa_runs_outputs.Rd | 3 civis-1.3.0/civis/man/enhancements_list_person_matching_runs.Rd |only civis-1.3.0/civis/man/enhancements_list_person_matching_runs_logs.Rd |only civis-1.3.0/civis/man/enhancements_list_person_matching_runs_outputs.Rd |only civis-1.3.0/civis/man/enhancements_patch_person_matching.Rd |only civis-1.3.0/civis/man/enhancements_post_person_matching.Rd |only civis-1.3.0/civis/man/enhancements_post_person_matching_cancel.Rd |only civis-1.3.0/civis/man/enhancements_post_person_matching_runs.Rd |only civis-1.3.0/civis/man/enhancements_put_person_matching.Rd |only civis-1.3.0/civis/man/enhancements_put_person_matching_archive.Rd | 14 civis-1.3.0/civis/man/files_get.Rd | 4 civis-1.3.0/civis/man/git_repos_delete.Rd |only civis-1.3.0/civis/man/git_repos_get.Rd |only civis-1.3.0/civis/man/git_repos_list.Rd |only civis-1.3.0/civis/man/git_repos_post.Rd |only civis-1.3.0/civis/man/jobs_get.Rd | 9 civis-1.3.0/civis/man/jobs_list.Rd | 15 civis-1.3.0/civis/man/jobs_list_children.Rd | 1 civis-1.3.0/civis/man/jobs_list_parents.Rd | 9 civis-1.3.0/civis/man/match_targets_get.Rd |only civis-1.3.0/civis/man/match_targets_list.Rd | 1 civis-1.3.0/civis/man/match_targets_patch.Rd | 6 civis-1.3.0/civis/man/match_targets_post.Rd | 6 civis-1.3.0/civis/man/media_delete_ratecards_shares_groups.Rd |only civis-1.3.0/civis/man/media_delete_ratecards_shares_users.Rd |only civis-1.3.0/civis/man/media_get_optimizations.Rd | 6 civis-1.3.0/civis/man/media_get_ratecards.Rd |only civis-1.3.0/civis/man/media_list_ratecards.Rd | 5 civis-1.3.0/civis/man/media_list_ratecards_shares.Rd |only civis-1.3.0/civis/man/media_patch_optimizations.Rd | 21 civis-1.3.0/civis/man/media_patch_ratecards.Rd |only civis-1.3.0/civis/man/media_post_optimizations.Rd | 21 civis-1.3.0/civis/man/media_post_optimizations_clone.Rd | 6 civis-1.3.0/civis/man/media_post_ratecards.Rd |only civis-1.3.0/civis/man/media_put_optimizations_archive.Rd | 6 civis-1.3.0/civis/man/media_put_ratecards.Rd |only civis-1.3.0/civis/man/media_put_ratecards_archive.Rd |only civis-1.3.0/civis/man/media_put_ratecards_shares_groups.Rd |only civis-1.3.0/civis/man/media_put_ratecards_shares_users.Rd |only civis-1.3.0/civis/man/notebooks_get.Rd | 2 civis-1.3.0/civis/man/notebooks_get_deployments.Rd | 1 civis-1.3.0/civis/man/notebooks_get_git_commits.Rd |only civis-1.3.0/civis/man/notebooks_list.Rd | 1 civis-1.3.0/civis/man/notebooks_list_deployments.Rd | 1 civis-1.3.0/civis/man/notebooks_list_git.Rd |only civis-1.3.0/civis/man/notebooks_list_git_commits.Rd |only civis-1.3.0/civis/man/notebooks_patch.Rd | 12 civis-1.3.0/civis/man/notebooks_post.Rd | 12 civis-1.3.0/civis/man/notebooks_post_clone.Rd | 6 civis-1.3.0/civis/man/notebooks_post_deployments.Rd | 1 civis-1.3.0/civis/man/notebooks_post_git_commits.Rd |only civis-1.3.0/civis/man/notebooks_put.Rd | 12 civis-1.3.0/civis/man/notebooks_put_archive.Rd | 2 civis-1.3.0/civis/man/notebooks_put_git.Rd |only civis-1.3.0/civis/man/query_civis.Rd | 6 civis-1.3.0/civis/man/query_civis_file.Rd |only civis-1.3.0/civis/man/read_civis.Rd | 1 civis-1.3.0/civis/man/remote_hosts_list.Rd | 4 civis-1.3.0/civis/man/remote_hosts_post.Rd | 4 civis-1.3.0/civis/man/reports_delete_services_shares_groups.Rd |only civis-1.3.0/civis/man/reports_delete_services_shares_users.Rd |only civis-1.3.0/civis/man/reports_get.Rd | 1 civis-1.3.0/civis/man/reports_get_git_commits.Rd |only civis-1.3.0/civis/man/reports_get_services.Rd |only civis-1.3.0/civis/man/reports_list.Rd | 1 civis-1.3.0/civis/man/reports_list_git.Rd |only civis-1.3.0/civis/man/reports_list_git_commits.Rd |only civis-1.3.0/civis/man/reports_list_services_shares.Rd |only civis-1.3.0/civis/man/reports_patch.Rd | 1 civis-1.3.0/civis/man/reports_patch_services.Rd |only civis-1.3.0/civis/man/reports_post.Rd | 1 civis-1.3.0/civis/man/reports_post_git_commits.Rd |only civis-1.3.0/civis/man/reports_post_grants.Rd | 1 civis-1.3.0/civis/man/reports_put_archive.Rd | 1 civis-1.3.0/civis/man/reports_put_git.Rd |only civis-1.3.0/civis/man/reports_put_services_shares_groups.Rd |only civis-1.3.0/civis/man/reports_put_services_shares_users.Rd |only civis-1.3.0/civis/man/results_delete_services_shares_groups.Rd |only civis-1.3.0/civis/man/results_delete_services_shares_users.Rd |only civis-1.3.0/civis/man/results_get.Rd | 1 civis-1.3.0/civis/man/results_get_git_commits.Rd |only civis-1.3.0/civis/man/results_get_services.Rd |only civis-1.3.0/civis/man/results_list.Rd | 1 civis-1.3.0/civis/man/results_list_git.Rd |only civis-1.3.0/civis/man/results_list_git_commits.Rd |only civis-1.3.0/civis/man/results_list_services_shares.Rd |only civis-1.3.0/civis/man/results_patch.Rd | 1 civis-1.3.0/civis/man/results_patch_services.Rd |only civis-1.3.0/civis/man/results_post.Rd | 1 civis-1.3.0/civis/man/results_post_git_commits.Rd |only civis-1.3.0/civis/man/results_post_grants.Rd | 1 civis-1.3.0/civis/man/results_put_archive.Rd | 1 civis-1.3.0/civis/man/results_put_git.Rd |only civis-1.3.0/civis/man/results_put_services_shares_groups.Rd |only civis-1.3.0/civis/man/results_put_services_shares_users.Rd |only civis-1.3.0/civis/man/scripts_get_javascript_git_commits.Rd |only civis-1.3.0/civis/man/scripts_get_python3_git_commits.Rd |only civis-1.3.0/civis/man/scripts_get_r_git_commits.Rd |only civis-1.3.0/civis/man/scripts_get_sql_git_commits.Rd |only civis-1.3.0/civis/man/scripts_list_containers_runs_outputs.Rd | 3 civis-1.3.0/civis/man/scripts_list_custom_runs_outputs.Rd | 3 civis-1.3.0/civis/man/scripts_list_javascript_git.Rd |only civis-1.3.0/civis/man/scripts_list_javascript_git_commits.Rd |only civis-1.3.0/civis/man/scripts_list_javascript_runs_outputs.Rd | 3 civis-1.3.0/civis/man/scripts_list_python3_git.Rd |only civis-1.3.0/civis/man/scripts_list_python3_git_commits.Rd |only civis-1.3.0/civis/man/scripts_list_python3_runs_outputs.Rd | 3 civis-1.3.0/civis/man/scripts_list_r_git.Rd |only civis-1.3.0/civis/man/scripts_list_r_git_commits.Rd |only civis-1.3.0/civis/man/scripts_list_r_runs_outputs.Rd | 3 civis-1.3.0/civis/man/scripts_list_sql_git.Rd |only civis-1.3.0/civis/man/scripts_list_sql_git_commits.Rd |only civis-1.3.0/civis/man/scripts_list_sql_runs_outputs.Rd | 3 civis-1.3.0/civis/man/scripts_patch_containers.Rd | 1 civis-1.3.0/civis/man/scripts_post_containers.Rd | 1 civis-1.3.0/civis/man/scripts_post_containers_runs_logs.Rd |only civis-1.3.0/civis/man/scripts_post_containers_runs_outputs.Rd | 5 civis-1.3.0/civis/man/scripts_post_custom_runs_outputs.Rd | 5 civis-1.3.0/civis/man/scripts_post_javascript_git_commits.Rd |only civis-1.3.0/civis/man/scripts_post_javascript_runs_outputs.Rd | 5 civis-1.3.0/civis/man/scripts_post_python3_git_commits.Rd |only civis-1.3.0/civis/man/scripts_post_python3_runs_outputs.Rd | 5 civis-1.3.0/civis/man/scripts_post_r_git_commits.Rd |only civis-1.3.0/civis/man/scripts_post_r_runs_outputs.Rd | 5 civis-1.3.0/civis/man/scripts_post_sql_git_commits.Rd |only civis-1.3.0/civis/man/scripts_put_containers.Rd | 1 civis-1.3.0/civis/man/scripts_put_javascript_git.Rd |only civis-1.3.0/civis/man/scripts_put_python3_git.Rd |only civis-1.3.0/civis/man/scripts_put_r_git.Rd |only civis-1.3.0/civis/man/scripts_put_sql_git.Rd |only civis-1.3.0/civis/man/search_list.Rd | 1 civis-1.3.0/civis/man/stash_local_dataframe.Rd |only civis-1.3.0/civis/man/users_list_me.Rd | 1 civis-1.3.0/civis/man/users_patch_me.Rd | 1 civis-1.3.0/civis/man/workflows_get_executions.Rd | 2 civis-1.3.0/civis/man/workflows_get_git_commits.Rd |only civis-1.3.0/civis/man/workflows_list_git.Rd |only civis-1.3.0/civis/man/workflows_list_git_commits.Rd |only civis-1.3.0/civis/man/workflows_post_clone.Rd | 4 civis-1.3.0/civis/man/workflows_post_executions.Rd | 7 civis-1.3.0/civis/man/workflows_post_executions_cancel.Rd | 2 civis-1.3.0/civis/man/workflows_post_executions_resume.Rd | 2 civis-1.3.0/civis/man/workflows_post_executions_retry.Rd | 2 civis-1.3.0/civis/man/workflows_post_git_commits.Rd |only civis-1.3.0/civis/man/workflows_put_git.Rd |only civis-1.3.0/civis/man/write_civis.Rd | 15 civis-1.3.0/civis/man/write_civis_file.Rd | 3 civis-1.3.0/civis/tests/testthat/test_civis_ml.R | 46 civis-1.3.0/civis/tests/testthat/test_io.R | 65 civis-1.3.0/civis/tools/integration_tests/smoke_test.R | 8 civis-1.3.0/civis/vignettes/civis_ml.Rmd | 9 civis-1.3.0/civis/vignettes/concurrency.Rmd | 2 193 files changed, 3702 insertions(+), 451 deletions(-)
Title: Bayesian Mixing Models in R
Description: Creates and runs Bayesian mixing models to analyze
biological tracer data (i.e. stable isotopes, fatty acids), which estimate the
proportions of source (prey) contributions to a mixture (consumer). 'MixSIAR'
is not one model, but a framework that allows a user to create a mixing model
based on their data structure and research questions, via options for fixed/
random effects, source data types, priors, and error terms. 'MixSIAR' incorporates
several years of advances since 'MixSIR' and 'SIAR', and includes both GUI
(graphical user interface) and script versions.
Author: Brian Stock [cre, aut],
Brice Semmens [aut],
Eric Ward [ctb],
Andrew Parnell [ctb],
Andrew Jackson [ctb],
Donald Phillips [ctb]
Maintainer: Brian Stock <b1stock@ucsd.edu>
Diff between MixSIAR versions 3.1.7 dated 2016-08-23 and 3.1.9 dated 2018-03-30
MixSIAR-3.1.7/MixSIAR/inst/mixsiar_manual_3.1_small.pdf |only MixSIAR-3.1.9/MixSIAR/DESCRIPTION | 35 - MixSIAR-3.1.9/MixSIAR/MD5 | 116 ++-- MixSIAR-3.1.9/MixSIAR/NEWS.md | 46 + MixSIAR-3.1.9/MixSIAR/R/combine_sources.R |only MixSIAR-3.1.9/MixSIAR/R/compare_models.R |only MixSIAR-3.1.9/MixSIAR/R/create_mixsiar_envir.R | 2 MixSIAR-3.1.9/MixSIAR/R/load_mix_data.R | 2 MixSIAR-3.1.9/MixSIAR/R/load_source_data.R | 48 + MixSIAR-3.1.9/MixSIAR/R/mixsiar_gui.R | 2 MixSIAR-3.1.9/MixSIAR/R/output_JAGS.R | 96 ++- MixSIAR-3.1.9/MixSIAR/R/plot_continuous_var.R | 289 +++++++--- MixSIAR-3.1.9/MixSIAR/R/plot_intervals.R |only MixSIAR-3.1.9/MixSIAR/R/plot_prior.R | 6 MixSIAR-3.1.9/MixSIAR/R/run_model.R | 22 MixSIAR-3.1.9/MixSIAR/R/summary_stat.R |only MixSIAR-3.1.9/MixSIAR/R/write_JAGS_model.R | 20 MixSIAR-3.1.9/MixSIAR/README.md | 25 MixSIAR-3.1.9/MixSIAR/build/vignette.rds |binary MixSIAR-3.1.9/MixSIAR/inst/CITATION | 15 MixSIAR-3.1.9/MixSIAR/inst/doc/cladocera_ex.Rmd | 2 MixSIAR-3.1.9/MixSIAR/inst/doc/cladocera_ex.html | 8 MixSIAR-3.1.9/MixSIAR/inst/doc/geese_ex.Rmd | 2 MixSIAR-3.1.9/MixSIAR/inst/doc/geese_ex.html | 8 MixSIAR-3.1.9/MixSIAR/inst/doc/isopod_ex.Rmd | 2 MixSIAR-3.1.9/MixSIAR/inst/doc/isopod_ex.html | 8 MixSIAR-3.1.9/MixSIAR/inst/doc/killerwhale_ex.Rmd | 2 MixSIAR-3.1.9/MixSIAR/inst/doc/killerwhale_ex.html | 8 MixSIAR-3.1.9/MixSIAR/inst/doc/lake_ex.Rmd | 2 MixSIAR-3.1.9/MixSIAR/inst/doc/lake_ex.html | 8 MixSIAR-3.1.9/MixSIAR/inst/doc/wolves_ex.Rmd | 4 MixSIAR-3.1.9/MixSIAR/inst/doc/wolves_ex.html | 10 MixSIAR-3.1.9/MixSIAR/inst/example_scripts/mixsiar_script_alligator.R |only MixSIAR-3.1.9/MixSIAR/inst/example_scripts/mixsiar_script_mantis.R |only MixSIAR-3.1.9/MixSIAR/inst/extdata/alligator_TEF.csv |only MixSIAR-3.1.9/MixSIAR/inst/extdata/alligator_consumer.csv |only MixSIAR-3.1.9/MixSIAR/inst/extdata/alligator_sources_simplemean.csv |only MixSIAR-3.1.9/MixSIAR/inst/extdata/mantis_consumer.csv |only MixSIAR-3.1.9/MixSIAR/inst/extdata/mantis_discrimination.csv |only MixSIAR-3.1.9/MixSIAR/inst/extdata/mantis_source.csv |only MixSIAR-3.1.9/MixSIAR/inst/mixsiar_manual_small.pdf |only MixSIAR-3.1.9/MixSIAR/man/build_mix_win.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/build_source_win.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/calc_area.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/combine_sources.Rd |only MixSIAR-3.1.9/MixSIAR/man/compare_models.Rd |only MixSIAR-3.1.9/MixSIAR/man/load_discr_data.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/load_mix_data.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/load_source_data.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/mixsiar.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/mixsiar_gui.Rd | 3 MixSIAR-3.1.9/MixSIAR/man/output_JAGS.Rd | 10 MixSIAR-3.1.9/MixSIAR/man/plot_continuous_var.Rd | 10 MixSIAR-3.1.9/MixSIAR/man/plot_data.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/plot_data_one_iso.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/plot_data_two_iso.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/plot_intervals.Rd |only MixSIAR-3.1.9/MixSIAR/man/plot_prior.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/run_model.Rd | 1 MixSIAR-3.1.9/MixSIAR/man/summary_stat.Rd |only MixSIAR-3.1.9/MixSIAR/man/write_JAGS_model.Rd | 1 MixSIAR-3.1.9/MixSIAR/tests/testthat/test_run_model.R | 8 MixSIAR-3.1.9/MixSIAR/vignettes/cladocera_ex.Rmd | 2 MixSIAR-3.1.9/MixSIAR/vignettes/geese_ex.Rmd | 2 MixSIAR-3.1.9/MixSIAR/vignettes/isopod_ex.Rmd | 2 MixSIAR-3.1.9/MixSIAR/vignettes/killerwhale_ex.Rmd | 2 MixSIAR-3.1.9/MixSIAR/vignettes/lake_ex.Rmd | 2 MixSIAR-3.1.9/MixSIAR/vignettes/wolves_ex.Rmd | 4 68 files changed, 570 insertions(+), 276 deletions(-)
Title: Hierarchical Models for Parametric and Semi-Parametric Analyses
of Semi-Competing Risks Data
Description: Hierarchical multistate models are considered to perform the analysis of independent/clustered semi-competing risks data. The package allows to choose the specification for model components from a range of options giving users substantial flexibility, including: accelerated failure time or proportional hazards regression models; parametric or non-parametric specifications for baseline survival functions and cluster-specific random effects distribution; a Markov or semi-Markov specification for terminal event following non-terminal event. While estimation is mainly performed within the Bayesian paradigm, the package also provides the maximum likelihood estimation approach for several parametric models. The package also includes functions for univariate survival analysis as complementary analysis tools.
Author: Kyu Ha Lee, Catherine Lee, Danilo Alvares, and Sebastien Haneuse
Maintainer: Kyu Ha Lee <klee@hsph.harvard.edu>
Diff between SemiCompRisks versions 2.8 dated 2018-01-03 and 3.0 dated 2018-03-30
DESCRIPTION | 12 MD5 | 66 NAMESPACE | 16 R/BayesID_AFT.R | 24 R/BayesID_HReg.R | 92 - R/BayesSurv_AFT.R | 20 R/BayesSurv_HReg.R | 53 R/FreqID_HReg.R | 31 R/FreqSurv_HReg.R | 17 R/initiate.startValues_AFT.R | 48 R/initiate.startValues_HReg.R | 69 - R/internalFunc.R | 202 ++ R/methods.R | 2686 ++++++++++++++++++++++++++------------- R/old.functions.R | 10 R/simID.R | 14 R/simSurv.R | 15 inst/doc/SemiCompRisks.ltx | 422 ++---- inst/doc/SemiCompRisks.pdf |binary man/BayesID_AFT.Rd | 61 man/BayesID_HReg.Rd | 121 - man/BayesSurv_AFT.Rd | 53 man/BayesSurv_HReg.Rd | 116 - man/CIBMTR.Rd | 2 man/FreqID_HReg.Rd | 31 man/FreqSurv_HReg.Rd | 29 man/SemiCompRisks-package.Rd | 8 man/initiate.startValues_AFT.Rd | 13 man/initiate.startValues_HReg.Rd | 18 man/methods.Rd | 49 man/simID.Rd | 8 man/simSurv.Rd | 8 man/survData.Rd | 2 src/Utilities.c | 16 vignettes/SemiCompRisks.ltx | 422 ++---- 34 files changed, 2851 insertions(+), 1903 deletions(-)
Title: Semiparametric Competing Risks Regression under Interval
Censoring
Description: Semiparametric regression models for the cumulative incidence function with interval-censored competing risks data as described in Bakoyannis, Yu, & Yiannoutsos (2017) <doi:10.1002/sim.7350>. The main function fits the proportional subdistribution hazards model (Fine-Gray model), the proportional odds model, and other models that belong to the class of semiparametric generalized odds rate transformation models.
Author: Giorgos Bakoyannis <gbakogia@iu.edu>, Jun Park <jp84@iu.edu>
Maintainer: Jun Park <jp84@iu.edu>
Diff between intccr versions 0.2.0 dated 2017-09-12 and 1.0.0 dated 2018-03-30
DESCRIPTION | 12 ++-- MD5 | 43 ++++++++------ NAMESPACE | 11 ++- R/bssmle.R | 118 +++++++++++++++++++--------------------- R/bssmle_se.R | 104 ++++++++++++++++------------------- R/ciregic.R | 129 +++++++++++++++++++++++++------------------- R/dataprep.R |only R/longdat.R |only R/naive_b.R | 17 +++-- R/simdat.R | 6 +- R/surv2.R | 10 ++- data/longdat.rda |only data/simdat.rda |binary man/Surv2.Rd | 11 ++- man/bssmle.Rd | 29 +++++---- man/bssmle_se.Rd | 25 +++++--- man/ciregic.Rd | 52 ++++++++++------- man/dataprep.Rd |only man/longdat.Rd |only man/naive_b.Rd | 17 +++-- man/predict.ciregic.Rd | 2 man/simdat.Rd | 6 +- man/summary.ciregic.Rd | 6 +- man/vcov.ciregic.Rd | 2 man/vcov.summary.ciregic.Rd | 2 25 files changed, 326 insertions(+), 276 deletions(-)
Title: Feature Selection (Including Multiple Solutions) and Bayesian
Networks
Description: Many feature selection methods for a wide range of response variables, including minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin. Reference: Feature Selection with the R Package MXM: Discovering Statistically Equivalent Feature Subsets, Lagani, V. and Athineou, G. and Farcomeni, A. and Tsagris, M. and Tsamardinos, I. (2017). Journal of Statistical Software, 80(7). <doi:10.18637/jss.v080.i07>.
Author: Michail Tsagris [aut, cre],
Ioannis Tsamardinos [aut, cph],
Vincenzo Lagani [aut, cph],
Giorgos Athineou [aut],
Giorgos Borboudakis [ctb],
Anna Roumpelaki [ctb]
Maintainer: Michail Tsagris <mtsagris@csd.uoc.gr>
Diff between MXM versions 1.3.2 dated 2018-02-13 and 1.3.3 dated 2018-03-30
MXM-1.3.2/MXM/R/omp.R |only MXM-1.3.2/MXM/R/omp2.R |only MXM-1.3.2/MXM/R/rint.reg.R |only MXM-1.3.2/MXM/man/omp.Rd |only MXM-1.3.3/MXM/DESCRIPTION | 12 - MXM-1.3.3/MXM/MD5 | 176 +++++++++++++------------ MXM-1.3.3/MXM/NAMESPACE | 9 - MXM-1.3.3/MXM/R/bs.reg.R | 15 +- MXM-1.3.3/MXM/R/censIndCR.R | 31 ++-- MXM-1.3.3/MXM/R/censIndER.R | 28 ++- MXM-1.3.3/MXM/R/censIndWR.R | 28 ++- MXM-1.3.3/MXM/R/corfbed.network.R |only MXM-1.3.3/MXM/R/corfs.network.R | 2 MXM-1.3.3/MXM/R/dag_to_eg.R | 4 MXM-1.3.3/MXM/R/ebic.cr.bsreg.R | 133 +++++++++--------- MXM-1.3.3/MXM/R/ebic.fbed.clogit.R | 2 MXM-1.3.3/MXM/R/ebic.fbed.cr.R | 46 ++++-- MXM-1.3.3/MXM/R/ebic.fbed.tobit.R | 48 ++++-- MXM-1.3.3/MXM/R/ebic.fbed.wr.R | 42 +++-- MXM-1.3.3/MXM/R/ebic.univregs.R | 7 MXM-1.3.3/MXM/R/fbed.beta.R | 28 +-- MXM-1.3.3/MXM/R/fbed.clogit.R | 32 ++-- MXM-1.3.3/MXM/R/fbed.cr.R | 102 +++++++++----- MXM-1.3.3/MXM/R/fbed.geeglm.R | 26 ++- MXM-1.3.3/MXM/R/fbed.geeglm.reps.R | 48 ++++-- MXM-1.3.3/MXM/R/fbed.geelm.R | 28 ++- MXM-1.3.3/MXM/R/fbed.geelm.reps.R | 48 ++++-- MXM-1.3.3/MXM/R/fbed.glm.R | 36 +++-- MXM-1.3.3/MXM/R/fbed.glmm.R | 32 ++-- MXM-1.3.3/MXM/R/fbed.glmm.reps.R | 32 ++-- MXM-1.3.3/MXM/R/fbed.lm.R | 24 +-- MXM-1.3.3/MXM/R/fbed.lmm.R | 27 ++- MXM-1.3.3/MXM/R/fbed.lmm.reps.R | 27 ++- MXM-1.3.3/MXM/R/fbed.mmreg.R | 77 +++++++--- MXM-1.3.3/MXM/R/fbed.nb.R | 4 MXM-1.3.3/MXM/R/fbed.ordgee.R | 70 ++++++--- MXM-1.3.3/MXM/R/fbed.ordgee.reps.R | 80 +++++++---- MXM-1.3.3/MXM/R/fbed.tobit.R | 32 ++-- MXM-1.3.3/MXM/R/fbed.wr.R | 40 ++--- MXM-1.3.3/MXM/R/fbed.zip.R | 28 +-- MXM-1.3.3/MXM/R/fbedreg.bic.R | 8 - MXM-1.3.3/MXM/R/fs.reg.R | 2 MXM-1.3.3/MXM/R/glmm.ci.mm.R | 35 +--- MXM-1.3.3/MXM/R/gomp.R |only MXM-1.3.3/MXM/R/gomp2.R |only MXM-1.3.3/MXM/R/is.dag.R | 2 MXM-1.3.3/MXM/R/kfbed.glmm.reg.R | 4 MXM-1.3.3/MXM/R/kfbed.reg.R | 2 MXM-1.3.3/MXM/R/lm.fsreg.R | 2 MXM-1.3.3/MXM/R/mmpc.model.R | 2 MXM-1.3.3/MXM/R/reg.fit.R | 16 +- MXM-1.3.3/MXM/R/rint.regs.R | 114 ++++++++-------- MXM-1.3.3/MXM/R/ses.model.R | 24 +-- MXM-1.3.3/MXM/R/testIndGEEGamma.R | 4 MXM-1.3.3/MXM/R/testIndGEELogistic.R | 4 MXM-1.3.3/MXM/R/testIndGEENormLog.R | 4 MXM-1.3.3/MXM/R/testIndGEEPois.R | 4 MXM-1.3.3/MXM/R/testIndGEEReg.R | 4 MXM-1.3.3/MXM/R/topological_sort.R | 71 +++++----- MXM-1.3.3/MXM/R/univregs.R | 26 ++- MXM-1.3.3/MXM/R/waldQBinom.R | 2 MXM-1.3.3/MXM/build/vignette.rds |binary MXM-1.3.3/MXM/inst/doc/FBED_KVerrou_11_2.R |only MXM-1.3.3/MXM/inst/doc/FBED_KVerrou_11_2.Rmd |only MXM-1.3.3/MXM/inst/doc/FBED_KVerrou_11_2.html |only MXM-1.3.3/MXM/inst/doc/SES_KMVerrou_11_12.R |only MXM-1.3.3/MXM/inst/doc/SES_KMVerrou_11_12.Rmd |only MXM-1.3.3/MXM/inst/doc/SES_KMVerrou_11_12.html |only MXM-1.3.3/MXM/inst/doc/article.pdf |binary MXM-1.3.3/MXM/inst/doc/guide.pdf |binary MXM-1.3.3/MXM/inst/doc/mxm_mmpc_tutorial.R |only MXM-1.3.3/MXM/inst/doc/mxm_mmpc_tutorial.Rmd |only MXM-1.3.3/MXM/inst/doc/mxm_mmpc_tutorial.html |only MXM-1.3.3/MXM/man/MXM-internal.Rd | 6 MXM-1.3.3/MXM/man/MXM-package.Rd | 4 MXM-1.3.3/MXM/man/SES.Rd | 8 - MXM-1.3.3/MXM/man/beta.regs.Rd | 4 MXM-1.3.3/MXM/man/bs.reg.Rd | 2 MXM-1.3.3/MXM/man/censIndCR.Rd | 6 MXM-1.3.3/MXM/man/corfs.network.Rd | 12 + MXM-1.3.3/MXM/man/fbed.gee.reg.Rd | 4 MXM-1.3.3/MXM/man/fbed.glmm.reg.Rd | 2 MXM-1.3.3/MXM/man/fbed.reg.Rd | 6 MXM-1.3.3/MXM/man/fs.reg.Rd | 2 MXM-1.3.3/MXM/man/glm.bsreg.Rd | 2 MXM-1.3.3/MXM/man/glm.fsreg.Rd | 2 MXM-1.3.3/MXM/man/glmm.bsreg.Rd | 2 MXM-1.3.3/MXM/man/gomp.Rd |only MXM-1.3.3/MXM/man/lm.fsreg.Rd | 2 MXM-1.3.3/MXM/man/ma.ses.Rd | 3 MXM-1.3.3/MXM/man/reg.fit.Rd | 2 MXM-1.3.3/MXM/man/testIndBeta.Rd | 2 MXM-1.3.3/MXM/man/testIndClogit.Rd | 2 MXM-1.3.3/MXM/man/topological_sort.Rd | 2 MXM-1.3.3/MXM/man/univregs.Rd | 2 MXM-1.3.3/MXM/man/zip.mod.Rd | 2 MXM-1.3.3/MXM/vignettes/FBED_KVerrou_11_2.Rmd |only MXM-1.3.3/MXM/vignettes/SES_KMVerrou_11_12.Rmd |only MXM-1.3.3/MXM/vignettes/mxm_mmpc_tutorial.Rmd |only 99 files changed, 1057 insertions(+), 756 deletions(-)
Title: An Implementation of Crawford's and Wright's Learning Curve
Production Functions
Description: Implements common learning curve production functions. It incorporates
Crawford's and Wright's learning curve functions to compute unit and cumulative
block estimates for time (or cost) of units along with an aggregate learning
curve. It also provides delta and error functions and some basic learning curve
plotting functions.along with functions to compute aggregated learning curves,
error rates, and to visualize learning curves.
Author: Bradley Boehmke [aut, cre],
Jason Freels [aut]
Maintainer: Bradley Boehmke <bradleyboehmke@gmail.com>
Diff between learningCurve versions 1.1.1 dated 2017-03-03 and 1.1.2 dated 2018-03-30
DESCRIPTION | 14 LICENSE | 4 MD5 | 78 +- NAMESPACE | 48 - R/aggregate_model.R | 118 ++-- R/cumulative_avg_models.R | 210 +++---- R/delta_and_error_models.R | 190 +++---- R/plot_functions.R | 376 +++++++------- R/slope_rate_models.R | 260 ++++----- R/unit_models.R | 630 +++++++++++------------ README.md | 72 +- build/vignette.rds |binary inst/doc/learningCurve.R | 353 ++++++------- inst/doc/learningCurve.Rmd | 813 +++++++++++++++--------------- inst/doc/learningCurve.html | 829 +++++++++++++++---------------- man/agg_curve.Rd | 76 +- man/ca_block.Rd | 68 +- man/ca_unit.Rd | 62 +- man/cum_error.Rd | 60 +- man/delta.Rd | 86 +-- man/lc_rate.Rd | 46 - man/lc_rate_est.Rd | 52 - man/natural_slope.Rd | 46 - man/natural_slope_est.Rd | 54 +- man/plot_block_summary.Rd | 58 +- man/plot_delta.Rd | 72 +- man/plot_unit_curve.Rd | 94 +-- man/unit_block_summary.Rd | 82 +-- man/unit_cum_appx.Rd | 88 +-- man/unit_cum_exact.Rd | 66 +- man/unit_curve.Rd | 86 +-- man/unit_midpoint.Rd | 56 +- tests/testthat.R | 12 tests/testthat/test_aggregate.R | 26 tests/testthat/test_cum_avg_models.R | 44 - tests/testthat/test_delta_error_models.R | 38 - tests/testthat/test_plot_functions.R | 32 - tests/testthat/test_slope_rate_models.R | 62 +- tests/testthat/test_unit_models.R | 110 ++-- vignettes/learningCurve.Rmd | 813 +++++++++++++++--------------- 40 files changed, 3144 insertions(+), 3140 deletions(-)
Title: Plotting for Bayesian Models
Description: Plotting functions for posterior analysis, model checking,
and MCMC diagnostics. The package is designed not only to provide convenient
functionality for users, but also a common set of functions that can be
easily used by developers working on a variety of R packages for Bayesian
modeling, particularly (but not exclusively) packages interfacing with 'Stan'.
Author: Jonah Gabry [aut, cre],
Tristan Mahr [aut],
Paul-Christian Buerkner [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between bayesplot versions 1.4.0 dated 2017-09-12 and 1.5.0 dated 2018-03-30
DESCRIPTION | 14 MD5 | 165 +++-- NAMESPACE | 24 NEWS.md | 205 ++++--- R/bayesplot-extractors.R | 22 R/bayesplot-helpers.R | 7 R/bayesplot-package.R | 7 R/helpers-gg.R | 49 + R/helpers-ppc.R | 194 +++--- R/mcmc-diagnostics-nuts.R | 82 +- R/mcmc-diagnostics.R | 203 ++++--- R/mcmc-distributions.R | 116 +++- R/mcmc-intervals.R | 825 +++++++++++++++++++---------- R/mcmc-parcoord.R | 4 R/mcmc-traces.R | 1 R/ppc-discrete.R | 70 +- R/ppc-distributions.R | 285 ++++------ R/ppc-errors.R | 8 R/ppc-intervals.R | 20 R/ppc-loo.R | 237 ++++++-- R/ppc-test-statistics.R | 12 build/vignette.rds |binary inst/doc/graphical-ppcs.Rmd | 15 inst/doc/graphical-ppcs.html | 104 +-- inst/doc/plotting-mcmc-draws.Rmd | 21 inst/doc/plotting-mcmc-draws.html | 67 +- inst/doc/visual-mcmc-diagnostics.Rmd | 14 inst/doc/visual-mcmc-diagnostics.html | 115 ++-- man/MCMC-distributions.Rd | 29 - man/MCMC-intervals.Rd | 54 + man/MCMC-nuts.Rd | 4 man/MCMC-overview.Rd | 7 man/MCMC-parcoord.Rd | 11 man/MCMC-scatterplots.Rd | 7 man/PPC-discrete.Rd | 2 man/PPC-distributions.Rd | 21 man/PPC-intervals.Rd | 4 man/PPC-loo.Rd | 135 +++- man/PPC-overview.Rd | 7 man/bayesplot-package.Rd | 13 tests/figs |only tests/testthat/Rplots.pdf |binary tests/testthat/data-for-mcmc-tests.R | 3 tests/testthat/data-for-ppc-tests.R | 10 tests/testthat/test-helpers-mcmc.R | 22 tests/testthat/test-helpers-ppc.R | 23 tests/testthat/test-mcmc-combo.R | 3 tests/testthat/test-mcmc-diagnostics.R | 54 + tests/testthat/test-mcmc-distributions.R | 51 + tests/testthat/test-mcmc-intervals.R | 182 +++++- tests/testthat/test-ppc-discrete.R | 2 tests/testthat/test-ppc-distributions.R | 114 +++- tests/testthat/test-ppc-errors.R | 4 tests/testthat/test-ppc-input-validation.R | 2 tests/testthat/test-ppc-intervals.R | 56 + tests/testthat/test-ppc-loo.R | 85 ++ tests/testthat/test-ppc-scatterplots.R | 2 tests/testthat/test-ppc-test-statistics.R | 2 vignettes/graphical-ppcs.Rmd | 15 vignettes/plotting-mcmc-draws.Rmd | 21 vignettes/visual-mcmc-diagnostics.Rmd | 14 61 files changed, 2657 insertions(+), 1188 deletions(-)
Title: Immunoglobulin Clonal Lineage and Diversity Analysis
Description: Provides immunoglobulin (Ig) sequence lineage reconstruction,
diversity profiling, and amino acid property analysis.
Citations:
Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>,
Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.
Author: Jason Vander Heiden [aut, cre],
Namita Gupta [aut],
Susanna Marquez [ctb],
Daniel Gadala-Maria [ctb],
Rouyi Jiang [ctb],
Nima Nouri [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@yale.edu>
Diff between alakazam versions 0.2.9 dated 2018-03-22 and 0.2.10 dated 2018-03-30
DESCRIPTION | 15 +++++++++------ MD5 | 18 +++++++++--------- NEWS.md | 9 +++++++++ R/Data.R | 8 +++++--- R/Sequence.R | 2 +- inst/doc/AminoAcids-Vignette.pdf |binary inst/doc/Diversity-Vignette.pdf |binary inst/doc/GeneUsage-Vignette.pdf |binary inst/doc/Lineage-Vignette.pdf |binary inst/doc/Topology-Vignette.pdf |binary 10 files changed, 33 insertions(+), 19 deletions(-)
Title: High-Dimensional Regression with Measurement Error
Description: Penalized regression for generalized linear models for
measurement error problems (aka. errors-in-variables). The package
contains a version of the lasso (L1-penalization) which corrects
for measurement error (Sorensen et al. (2015) <doi:10.5705/ss.2013.180>).
It also contains an implementation of the Generalized Matrix Uncertainty
Selector, which is a version the (Generalized) Dantzig Selector for the
case of measurement error (Sorensen et al. (2018) <doi:10.1080/10618600.2018.1425626>).
Author: Oystein Sorensen
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between hdme versions 0.1.0 dated 2018-03-09 and 0.1.1 dated 2018-03-30
DESCRIPTION | 9 MD5 | 97 +-- NAMESPACE | 38 - NEWS.md |only R/RcppExports.R | 14 R/corrected_lasso_gaussian.R | 88 +- R/corrected_lasso_glm.R | 130 ++-- R/cv_corrected_lasso.R | 180 ++--- R/fit_corrected_lasso.R | 238 +++---- R/fit_gds.R | 72 +- R/fit_gmu_lasso.R | 236 +++---- R/fit_gmus.R | 156 ++--- R/fit_mus.R | 88 +- R/gauss_loss.R | 24 R/gmu_lasso_binomial.R | 94 +-- R/helper_functions.R | 22 R/mus_glm.R | 100 +-- R/musalgorithm.R | 100 +-- R/plot.corrected_lasso.R | 92 +- R/plot.cv_corrected_lasso.R | 44 - R/plot.gmu_lasso.R | 52 - R/plot.gmus.R | 102 +-- R/project_gradient.R | 42 - R/project_onto_l1_ball.R | 18 R/set_radius.R | 22 README.md | 106 ++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 26 inst/REFERENCES.bib | 340 +++++----- inst/doc/hdme-package.R | 468 +++++++-------- inst/doc/hdme-package.Rmd | 1052 +++++++++++++++++----------------- inst/doc/hdme-package.html | 1052 +++++++++++++++++----------------- man/cv_corrected_lasso.Rd | 140 ++-- man/fit_corrected_lasso.Rd | 180 ++--- man/fit_gds.Rd | 76 +- man/fit_gmu_lasso.Rd | 126 ++-- man/fit_gmus.Rd | 122 +-- man/fit_mus.Rd | 108 +-- man/gmu_lasso_binomial.Rd | 62 +- man/mus_glm.Rd | 52 - man/musalgorithm.Rd | 40 - man/plot.corrected_lasso.Rd | 76 +- man/plot.cv_corrected_lasso.Rd | 32 - man/plot.gmu_lasso.Rd | 68 +- man/plot.gmus.Rd | 94 +-- src/Makevars | 6 tests/testthat.R | 8 tests/testthat/test_corrected_lasso.R | 48 - vignettes/hdme-package.Rmd | 1052 +++++++++++++++++----------------- 50 files changed, 3715 insertions(+), 3677 deletions(-)
Title: Read and Search Interface to the 'HL7 FHIR' REST API
Description: R on FHIR is an easy to use wrapper around the 'HL7 FHIR' REST API (STU 3). It provides tools to easily read and search resources on a FHIR server and brings the results into the R environment. R on FHIR is based on the FhirClient of the official 'HL7 FHIR .NET API', also made by Firely.
Author: Sander Laverman [aut, cre],
Firely B.V. [aut, cph]
Maintainer: Sander Laverman <sander@fire.ly>
Diff between RonFHIR versions 0.1.0 dated 2017-10-18 and 0.2.0 dated 2018-03-30
DESCRIPTION | 14 - LICENSE | 4 MD5 | 24 + NAMESPACE | 3 R/fhirClient.R | 177 +++++++++++--- R/requester.R | 86 +++++- R/searchParams.R | 456 ++++++++++++++++++------------------- R/searchParamsExtensions.R | 130 +++++----- README.md |only man/fhirClient.Rd | 53 ++++ tests/testfiles |only tests/testthat.R | 8 tests/testthat/test-fhirClient.R | 37 +-- tests/testthat/test-searchParams.R | 328 +++++++++++++------------- 14 files changed, 763 insertions(+), 557 deletions(-)
Title: Estimate Percentiles from an Ordered Categorical Variable
Description: An implementation of two functions that estimate values for percentiles from an ordered categorical variable as described by Reardon (2011, isbn:978-0-87154-372-1). One function estimates percentile differences from two percentiles while the other returns the values for every percentile from 1 to 100.
Author: Jorge Cimentada [aut, cre]
Maintainer: Jorge Cimentada <cimentadaj@gmail.com>
Diff between perccalc versions 1.0.0 dated 2017-09-14 and 1.0.1 dated 2018-03-30
DESCRIPTION | 11 MD5 | 28 - NAMESPACE | 10 build/vignette.rds |binary inst/doc/perc_calculator_example.R | 323 +++++++++---------- inst/doc/perc_calculator_example.Rmd | 471 ++++++++++++++-------------- inst/doc/perc_calculator_example.html | 561 +++++++++++++++++----------------- inst/doc/perc_warning_example.R | 68 ++-- inst/doc/perc_warning_example.Rmd | 120 +++---- inst/doc/perc_warning_example.html | 297 +++++++++--------- man/perc_diff.Rd | 120 +++---- man/perc_dist.Rd | 104 +++--- tests/testthat |only tests/testthat.R |only vignettes/perc_calculator_example.Rmd | 471 ++++++++++++++-------------- vignettes/perc_warning_example.Rmd | 120 +++---- 16 files changed, 1358 insertions(+), 1346 deletions(-)
Title: Extra Map Databases
Description: Supplement to maps package, providing the larger and/or
higher-resolution databases.
Author: Original S code by Richard A. Becker and Allan R. Wilks.
R version by Ray Brownrigg <Ray.Brownrigg@ecs.vuw.ac.nz>.
Maintainer: Alex Deckmyn <alex.deckmyn@meteo.be>
Diff between mapdata versions 2.2-6 dated 2016-01-14 and 2.3.0 dated 2018-03-30
DESCRIPTION | 8 ++--- MD5 | 35 ++++++++++++++---------- configure | 32 +++++++++++++++------- configure.ac | 2 - data/chinaMapEnv.rda |binary data/japanMapEnv.rda |binary data/nzHiresMapEnv.rda |binary data/riversMapEnv.rda |binary data/world2HiresMapEnv.rda |binary data/world2LoresMapEnv.rda |only data/worldHiresMapEnv.rda |binary data/worldLoresMapEnv.rda |only man/world2Hires.Rd | 7 ++++ man/worldHires.Rd | 13 ++++++--- src/Makefile.in | 62 ++++++++++++++++++++++++++++--------------- src/Makefile.win | 64 ++++++++++++++++++++++++++++----------------- src/worldHires.name | 4 +- src/worldLores.gon |only src/worldLores.gonstats |only src/worldLores.line |only src/worldLores.linestats |only src/worldLores.name |only 22 files changed, 147 insertions(+), 80 deletions(-)
Title: SPatially aUTomatic deNoising for Ims toolKit
Description: A set of tools for the peak filtering of mass spectrometry
imaging data (MSI or IMS) based on spatial distribution of signal. Given a
region-of-interest (ROI), representing the spatial region where the informative signal is expected to be
localized, a series of filters determine which peak signals are characterized by
an implausible spatial distribution. The filters reduce the dataset dimensionality
and increase its information vs noise ratio, improving the quality of the
unsupervised analysis results, reducing data dimensionality and simplifying
the chemical interpretation.
Author: Paolo Inglese [aut, cre],
Goncalo Correia [aut, ctb]
Maintainer: Paolo Inglese <p.inglese14@imperial.ac.uk>
Diff between SPUTNIK versions 1.0.1 dated 2018-02-23 and 1.0.2 dated 2018-03-30
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/msi.dataset_funcs.R | 21 ++++++++++++--------- 3 files changed, 17 insertions(+), 14 deletions(-)
Title: Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Description: Spatial coverage sampling and random sampling from compact
geographical strata created by k-means. See Walvoort et al. (2010) <doi:10.1016/j.cageo.2010.04.005> for details.
Author: Dennis Walvoort [aut, cre, cph],
Dick Brus [aut, cph],
Jaap de Gruijter [aut, cph]
Maintainer: Dennis Walvoort <dennis.Walvoort@wur.nl>
Diff between spcosa versions 0.3-7 dated 2018-01-19 and 0.3-8 dated 2018-03-30
DESCRIPTION | 10 - MD5 | 12 - R/onAttach.R | 5 build/spcosa.pdf |binary build/vignette.rds |binary inst/NEWS.Rd | 6 inst/doc/spcosa.html | 394 ++++++++++++++++++++++++++++++++++++++++++--------- 7 files changed, 349 insertions(+), 78 deletions(-)
Title: Automatic Short Form Creation
Description: Performs automatic creation of short forms of scales with an
ant colony optimization algorithm and a Tabu search. As implemented in the
package, the ant colony algorithm randomly selects items to build a model of
a specified length, then updates the probability of item selection according
to the fit of the best model within each set of searches. The algorithm
continues until the same items are selected by multiple ants a given number
of times in a row. On the other hand, the Tabu search changes one parameter at
a time to be either free, constrained, or fixed while keeping track of the
changes made and putting changes that result in worse fit in a "tabu" list
so that the algorithm does not revisit them for some number of searches.
See Leite, Huang, & Marcoulides (2008) <doi:10.1080/00273170802285743> for
an applied example of the ant colony algorithm, and Marcoulides & Falk (2018)
<doi:10.1080/10705511.2017.1409074> for an applied example of the Tabu search.
Author: Walter Leite [aut],
Anthony Raborn [aut, cre]
Maintainer: Anthony Raborn <anthony.w.raborn@gmail.com>
Diff between ShortForm versions 0.3.0 dated 2017-10-20 and 0.4.0 dated 2018-03-30
DESCRIPTION | 25 +++++++++++++++---------- MD5 | 24 ++++++++++++++++++------ NAMESPACE | 4 ++++ NEWS.md |only R/ACO_MPlus.R | 3 ++- R/ACO_lavaan.R | 1 + R/Tabu_addparam.R |only R/Tabu_internal.R |only R/Tabu_refit.R |only R/Tabu_searchprep.R |only R/Tabu_sem.R |only R/lavaan_copied_internal_functions.R |only man/add.param.Rd |only man/antcolony.lavaan.Rd | 3 +++ man/antcolony.mplus.Rd | 6 ++++++ man/par.matches.Rd |only man/refit.model.Rd |only man/search.prep.Rd |only man/tabu.sem.Rd |only 19 files changed, 49 insertions(+), 17 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Some custom inputs widgets to use in Shiny applications, like a toggle switch to replace checkboxes. And other components to pimp your apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
Silvio Moreto [ctb, cph] (bootstrap-select),
Ana Carolina [ctb, cph] (bootstrap-select),
caseyjhol [ctb, cph] (bootstrap-select),
Matt Bryson [ctb, cph] (bootstrap-select),
t0xicCode [ctb, cph] (bootstrap-select),
Mattia Larentis [ctb, cph] (Bootstrap Switch),
Emanuele Marchi [ctb, cph] (Bootstrap Switch),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Flatlogic [cph] (Awesome Bootstrap Checkbox),
mouse0270 [ctb, cph] (Material Design Switch),
Tristan Edwards [ctb, cph] (SweetAlert),
Fabian Lindfors [ctb, cph] (multi.js),
David Granjon [ctb] (jQuery Knob shiny interface),
Anthony Terrien [ctb, cph] (jQuery Knob),
Daniel Eden [ctb, cph] (animate.css),
Ganapati V S [ctb, cph] (bttn.css),
Brian Grinstead [ctb, cph] (Spectrum),
Lokesh Rajendran [ctb, cph] (pretty-checkbox),
Leon Gersen [ctb, cph] (wnumb & noUiSlider)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.4.1 dated 2018-01-28 and 0.4.2 dated 2018-03-30
shinyWidgets-0.4.1/shinyWidgets/man/progressBar.Rd |only shinyWidgets-0.4.1/shinyWidgets/man/updateProgressBar.Rd |only shinyWidgets-0.4.2/shinyWidgets/DESCRIPTION | 12 shinyWidgets-0.4.2/shinyWidgets/MD5 | 121 ++- shinyWidgets-0.4.2/shinyWidgets/NAMESPACE | 24 shinyWidgets-0.4.2/shinyWidgets/NEWS.md | 11 shinyWidgets-0.4.2/shinyWidgets/R/attachShinyWidgetsDep.R | 13 shinyWidgets-0.4.2/shinyWidgets/R/demo-nouislider.R |only shinyWidgets-0.4.2/shinyWidgets/R/input-dropdown.R | 118 ++- shinyWidgets-0.4.2/shinyWidgets/R/input-noUiSlider.R |only shinyWidgets-0.4.2/shinyWidgets/R/input-pretty.R | 148 +++- shinyWidgets-0.4.2/shinyWidgets/R/input-search.R | 87 ++ shinyWidgets-0.4.2/shinyWidgets/R/input-switch.R | 3 shinyWidgets-0.4.2/shinyWidgets/R/module-pickerGroup.R |only shinyWidgets-0.4.2/shinyWidgets/R/module-selectizeGroup.R |only shinyWidgets-0.4.2/shinyWidgets/R/module-utils.R |only shinyWidgets-0.4.2/shinyWidgets/R/progressBars.R | 95 +- shinyWidgets-0.4.2/shinyWidgets/R/shinyWidgetsGallery.R | 20 shinyWidgets-0.4.2/shinyWidgets/R/sw-dropdown.R | 25 shinyWidgets-0.4.2/shinyWidgets/R/sweetalert.R | 369 +++++++--- shinyWidgets-0.4.2/shinyWidgets/README.md | 30 shinyWidgets-0.4.2/shinyWidgets/inst/examples/jQueryKnob/app.R | 40 - shinyWidgets-0.4.2/shinyWidgets/inst/examples/nouislider |only shinyWidgets-0.4.2/shinyWidgets/inst/examples/pretty/pretty_readme.R | 3 shinyWidgets-0.4.2/shinyWidgets/inst/images/confirmSweetAlert.gif |only shinyWidgets-0.4.2/shinyWidgets/inst/images/knob.gif |only shinyWidgets-0.4.2/shinyWidgets/inst/images/sendSweetAlert.gif |only shinyWidgets-0.4.2/shinyWidgets/inst/www/dropdown/dropdown-click.js | 48 - shinyWidgets-0.4.2/shinyWidgets/inst/www/modules |only shinyWidgets-0.4.2/shinyWidgets/inst/www/nouislider |only shinyWidgets-0.4.2/shinyWidgets/inst/www/progressBars/progressBars-bindings.js | 3 shinyWidgets-0.4.2/shinyWidgets/inst/www/searchInput/search-bindings.js | 26 shinyWidgets-0.4.2/shinyWidgets/inst/www/shinyWidgets-bindings.min.js | 2 shinyWidgets-0.4.2/shinyWidgets/inst/www/sweetAlert/sweetalert-bindings.js | 66 + shinyWidgets-0.4.2/shinyWidgets/inst/www/uglify.R | 1 shinyWidgets-0.4.2/shinyWidgets/man/confirmSweetAlert.Rd | 125 +++ shinyWidgets-0.4.2/shinyWidgets/man/demoNoUiSlider.Rd |only shinyWidgets-0.4.2/shinyWidgets/man/dropdown.Rd | 8 shinyWidgets-0.4.2/shinyWidgets/man/dropdownButton.Rd | 46 + shinyWidgets-0.4.2/shinyWidgets/man/noUiSliderInput.Rd |only shinyWidgets-0.4.2/shinyWidgets/man/pickerGroup-module.Rd |only shinyWidgets-0.4.2/shinyWidgets/man/prettyCheckbox.Rd | 59 + shinyWidgets-0.4.2/shinyWidgets/man/prettyCheckboxGroup.Rd | 2 shinyWidgets-0.4.2/shinyWidgets/man/prettyRadioButtons.Rd | 2 shinyWidgets-0.4.2/shinyWidgets/man/prettySwitch.Rd | 7 shinyWidgets-0.4.2/shinyWidgets/man/prettyToggle.Rd | 72 + shinyWidgets-0.4.2/shinyWidgets/man/progress-bar.Rd |only shinyWidgets-0.4.2/shinyWidgets/man/searchInput.Rd | 8 shinyWidgets-0.4.2/shinyWidgets/man/selectizeGroup-module.Rd |only shinyWidgets-0.4.2/shinyWidgets/man/sendSweetAlert.Rd | 119 ++- shinyWidgets-0.4.2/shinyWidgets/man/shinyWidgetsGallery.Rd | 13 shinyWidgets-0.4.2/shinyWidgets/man/switchInput.Rd | 3 shinyWidgets-0.4.2/shinyWidgets/man/toggleDropdownButton.Rd | 54 + shinyWidgets-0.4.2/shinyWidgets/man/updateNoUiSliderInput.Rd |only shinyWidgets-0.4.2/shinyWidgets/man/updateSearchInput.Rd |only shinyWidgets-0.4.2/shinyWidgets/man/wNumbFormat.Rd |only shinyWidgets-0.4.2/shinyWidgets/tests/testthat/helper.R |only shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-SweetAlert.R |only shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-checkboxGroupButtons.R | 185 +++-- shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-colorSelector.R | 25 shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-dropdown.R | 20 shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-dropdownButton.R | 20 shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-knob.R |only shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-modules.R |only shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-multi.R |only shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-noUiSlider.R |only shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-onLoad.R |only shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-panel.R | 19 shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-radioGroupButtons.R | 184 +++- shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-sliderText.R |only shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-spectrum.R |only shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-textInputAddon.R | 13 shinyWidgets-0.4.2/shinyWidgets/tests/testthat/test-utilityinputs.R | 49 + 73 files changed, 1813 insertions(+), 485 deletions(-)
Title: Radiomics Image Analysis Toolbox for Medial Images
Description: Radiomics image analysis toolbox for 2D and 3D radiological images. RIA supports DICOM, NIfTI and
nrrd file formats. RIA calculates first-order, gray level co-occurrence matrix,
gray level run length matrix and geometry-based statistics. Almost all calculations are done
using vectorized formulas to optimize run speeds. Calculation of several thousands of parameters
only takes minutes on a single core of a conventional PC.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <marton.kolossvary@cirg.hu>
Diff between RIA versions 1.3.0 dated 2017-12-13 and 1.4.0 dated 2018-03-30
DESCRIPTION | 23 +++++----- MD5 | 109 +++++++++++++++++++++++++----------------------- NAMESPACE | 3 + R/DICOM_codes.R | 4 - R/NRS.R | 4 - R/Non_NRS.R | 4 - R/ZZZ.R | 2 R/automatic_name.R | 3 - R/change_to.R | 18 ------- R/check_data_in.R | 1 R/create_header.R | 28 ------------ R/create_header_nifti.R |only R/create_header_nrrd.R |only R/crop.R | 35 --------------- R/discretize.R | 6 +- R/first_order.R | 6 +- R/first_order_plus.R | 3 - R/geometry.R | 6 +- R/geometry_plus.R | 2 R/glcm.R | 6 +- R/glcm_all.R | 10 ++-- R/glcm_stat.R | 6 +- R/glcm_stat_plus.R | 3 - R/glrlm.R | 6 +- R/glrlm_all.R | 10 ++-- R/glrlm_stat.R | 6 +- R/glrlm_stat_all.R | 6 +- R/glrlm_stat_plus.R | 3 - R/list_to_df.R | 1 R/load_dicom.R | 4 - R/load_nifti.R |only R/load_nrrd.R |only R/radiomics_all.R | 6 +- R/save_RIA.R |only R/save_RIA_base.R |only R/shift_to.R | 20 -------- R/volume_to_dataframe.R | 2 inst/CITATION | 12 ++--- inst/doc/RIA.R | 3 + inst/doc/RIA.Rmd | 66 +++++++++++++++++------------ inst/doc/RIA.html | 70 +++++++++++++++++------------- man/DICOM_codes.Rd | 4 - man/NRS.Rd | 4 - man/Non_NRS.Rd | 4 - man/discretize.Rd | 6 +- man/first_order.Rd | 6 +- man/geometry.Rd | 6 +- man/glcm.Rd | 6 +- man/glcm_all.Rd | 6 +- man/glcm_stat.Rd | 6 +- man/glrlm.Rd | 6 +- man/glrlm_all.Rd | 6 +- man/glrlm_stat.Rd | 6 +- man/glrlm_stat_all.Rd | 6 +- man/load_dicom.Rd | 4 - man/load_nifti.Rd |only man/load_nrrd.Rd |only man/radiomics_all.Rd | 6 +- man/save_RIA.Rd |only vignettes/RIA.Rmd | 66 +++++++++++++++++------------ 60 files changed, 306 insertions(+), 339 deletions(-)
Title: Mark-Recapture Analysis for Survival and Abundance Estimation
Description: Functions for fitting various models to capture-recapture data
including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and
the multi-variate state model structure for survival
estimation and POPAN structured Jolly-Seber models for abundance estimation.
There are also Hidden Markov model (HMM) implementations of CJS and multistate
models with and without state uncertainty and a simulation capability for HMM
models.
Author: Jeff Laake <jefflaake@gmail.com>, Devin Johnson
<devin.johnson@noaa.gov>, Paul Conn <paul.conn@noaa.gov>, example for simHMM
from Jay Rotella
Maintainer: Jeff Laake <jefflaake@gmail.com>
Diff between marked versions 1.1.13 dated 2016-12-06 and 1.2.1 dated 2018-03-30
marked-1.1.13/marked/man/cjs.Rd |only marked-1.2.1/marked/DESCRIPTION | 28 marked-1.2.1/marked/MD5 | 224 +-- marked-1.2.1/marked/NAMESPACE | 3 marked-1.2.1/marked/NEWS | 32 marked-1.2.1/marked/R/HMMLikelihood.r | 2 marked-1.2.1/marked/R/InitialDistribution_functions.r | 2 marked-1.2.1/marked/R/Observation_functions.r | 2 marked-1.2.1/marked/R/RHMMLikelihood.r | 2 marked-1.2.1/marked/R/Transition_functions.r | 2 marked-1.2.1/marked/R/cjs.R | 666 +++++----- marked-1.2.1/marked/R/cjs.accumulate.R | 186 +- marked-1.2.1/marked/R/cjs.hessian.r | 2 marked-1.2.1/marked/R/cjs.initial.R | 82 - marked-1.2.1/marked/R/cjs.lnl.r | 2 marked-1.2.1/marked/R/cjs_tmb.R | 285 +++- marked-1.2.1/marked/R/create.dm.R | 7 marked-1.2.1/marked/R/create.dmdf.R | 9 marked-1.2.1/marked/R/crm.R | 1196 +++++++++--------- marked-1.2.1/marked/R/hmmDemo.r | 2 marked-1.2.1/marked/R/js.hessian.R | 4 marked-1.2.1/marked/R/js.r | 2 marked-1.2.1/marked/R/make.design.data.R | 11 marked-1.2.1/marked/R/mixed.model.r | 420 +++--- marked-1.2.1/marked/R/mscjs.r | 2 marked-1.2.1/marked/R/mscjs_tmb.r |only marked-1.2.1/marked/R/mvmscjs.R | 64 marked-1.2.1/marked/R/probitCJS.R | 770 +++++------ marked-1.2.1/marked/R/proc.formula.r | 56 marked-1.2.1/marked/R/process.data.R | 1146 ++++++++--------- marked-1.2.1/marked/R/scale.r | 2 marked-1.2.1/marked/R/set.initial.r | 5 marked-1.2.1/marked/R/simHMM.r | 86 + marked-1.2.1/marked/R/splitCH.R | 170 +- marked-1.2.1/marked/R/zzz.R | 70 - marked-1.2.1/marked/build/vignette.rds |binary marked-1.2.1/marked/demo/00Index | 2 marked-1.2.1/marked/inst/CITATION | 30 marked-1.2.1/marked/inst/cjsre_tmb.cpp | 34 marked-1.2.1/marked/inst/df1b2gh.cpp | 482 +++---- marked-1.2.1/marked/inst/df1b2ghmult.cpp | 514 +++---- marked-1.2.1/marked/inst/doc/markedVignette.pdf |binary marked-1.2.1/marked/inst/minfil.cpp | 584 ++++---- marked-1.2.1/marked/inst/models.txt | 38 marked-1.2.1/marked/inst/multistate_tmb.cpp |only marked-1.2.1/marked/inst/xmodelm5.cpp | 142 +- marked-1.2.1/marked/man/HMMLikelihood.Rd | 9 marked-1.2.1/marked/man/Phi.mean.Rd | 5 marked-1.2.1/marked/man/R_HMMLikelihood.Rd | 7 marked-1.2.1/marked/man/backward_prob.Rd | 7 marked-1.2.1/marked/man/cjs.accumulate.Rd | 1 marked-1.2.1/marked/man/cjs.hessian.Rd | 3 marked-1.2.1/marked/man/cjs.initial.Rd | 1 marked-1.2.1/marked/man/cjs.lnl.Rd | 9 marked-1.2.1/marked/man/cjs_admb.Rd |only marked-1.2.1/marked/man/cjs_delta.Rd | 7 marked-1.2.1/marked/man/cjs_gamma.Rd | 9 marked-1.2.1/marked/man/cjs_tmb.Rd | 22 marked-1.2.1/marked/man/coef.crm.Rd | 7 marked-1.2.1/marked/man/compute.real.Rd | 1 marked-1.2.1/marked/man/compute_matrices.Rd | 1 marked-1.2.1/marked/man/convert.link.to.real.Rd | 7 marked-1.2.1/marked/man/create.dm.Rd | 1 marked-1.2.1/marked/man/create.dmdf.Rd | 11 marked-1.2.1/marked/man/create.fixed.matrix.Rd | 1 marked-1.2.1/marked/man/create.links.Rd | 1 marked-1.2.1/marked/man/crm.Rd | 23 marked-1.2.1/marked/man/crm.wrapper.Rd | 13 marked-1.2.1/marked/man/deriv_inverse.link.Rd | 9 marked-1.2.1/marked/man/dipper.Rd | 1 marked-1.2.1/marked/man/dmat_hsmm2hmm.Rd | 1 marked-1.2.1/marked/man/fix.parameters.Rd | 1 marked-1.2.1/marked/man/function.wrapper.Rd | 1 marked-1.2.1/marked/man/global_decode.Rd | 7 marked-1.2.1/marked/man/hmmDemo.Rd | 1 marked-1.2.1/marked/man/hsmm2hmm.Rd | 1 marked-1.2.1/marked/man/initiate_pi.Rd | 1 marked-1.2.1/marked/man/inverse.link.Rd | 7 marked-1.2.1/marked/man/js.Rd | 7 marked-1.2.1/marked/man/js.accumulate.Rd | 1 marked-1.2.1/marked/man/js.hessian.Rd | 3 marked-1.2.1/marked/man/js.lnl.Rd | 7 marked-1.2.1/marked/man/local_decode.Rd | 7 marked-1.2.1/marked/man/make.design.data.Rd | 7 marked-1.2.1/marked/man/merge_design.covariates.Rd | 9 marked-1.2.1/marked/man/mixed.model.admb.Rd | 5 marked-1.2.1/marked/man/mscjs.Rd | 7 marked-1.2.1/marked/man/mscjs_tmb.Rd |only marked-1.2.1/marked/man/mstrata.Rd | 1 marked-1.2.1/marked/man/mvms_design_data.Rd | 1 marked-1.2.1/marked/man/mvms_dmat.Rd | 11 marked-1.2.1/marked/man/mvmscjs.Rd | 7 marked-1.2.1/marked/man/omega.Rd | 1 marked-1.2.1/marked/man/predict.crm.Rd | 1 marked-1.2.1/marked/man/print.crm.Rd | 7 marked-1.2.1/marked/man/print.crmlist.Rd | 7 marked-1.2.1/marked/man/probitCJS.Rd | 2 marked-1.2.1/marked/man/proc.form.Rd | 1 marked-1.2.1/marked/man/process.ch.Rd | 1 marked-1.2.1/marked/man/process.data.Rd | 9 marked-1.2.1/marked/man/resight.matrix.Rd | 5 marked-1.2.1/marked/man/sealions.Rd | 1 marked-1.2.1/marked/man/set.fixed.Rd | 1 marked-1.2.1/marked/man/set.initial.Rd | 3 marked-1.2.1/marked/man/set.scale.Rd | 5 marked-1.2.1/marked/man/set_mvms.Rd | 1 marked-1.2.1/marked/man/setup.model.Rd | 7 marked-1.2.1/marked/man/setup.parameters.Rd | 7 marked-1.2.1/marked/man/setup_admb.Rd | 1 marked-1.2.1/marked/man/setup_tmb.Rd | 1 marked-1.2.1/marked/man/simHMM.Rd | 86 + marked-1.2.1/marked/man/skagit.Rd | 1 marked-1.2.1/marked/man/splitCH.Rd | 3 marked-1.2.1/marked/man/tagloss.Rd | 1 marked-1.2.1/marked/man/valid.parameters.Rd | 7 marked-1.2.1/marked/src/init.c |only 116 files changed, 4079 insertions(+), 3697 deletions(-)
Title: Locate Errors with Validation Rules
Description: Errors in data can be located and removed using validation rules from package 'validate'.
Author: Edwin de Jonge [aut, cre],
Mark van der Loo [aut]
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between errorlocate versions 0.1.2 dated 2016-12-29 and 0.1.3 dated 2018-03-30
errorlocate-0.1.2/errorlocate/README.md |only errorlocate-0.1.3/errorlocate/DESCRIPTION | 11 + errorlocate-0.1.3/errorlocate/MD5 | 60 +++++----- errorlocate-0.1.3/errorlocate/R/errorlocation.R | 7 - errorlocate-0.1.3/errorlocate/R/mip.R | 20 ++- errorlocate-0.1.3/errorlocate/R/mip_lpsolve.R | 28 ++++ errorlocate-0.1.3/errorlocate/R/mip_rule.R | 2 errorlocate-0.1.3/errorlocate/R/soft-rule.R | 20 ++- errorlocate-0.1.3/errorlocate/man/FHLocalizer-class.Rd | 2 errorlocate-0.1.3/errorlocate/man/MipRules-class.Rd | 3 errorlocate-0.1.3/errorlocate/man/add_noise.Rd | 1 errorlocate-0.1.3/errorlocate/man/cat_as_mip_rules.Rd | 1 errorlocate-0.1.3/errorlocate/man/cat_coefficients.Rd | 1 errorlocate-0.1.3/errorlocate/man/errorlocate-package.Rd | 16 ++ errorlocate-0.1.3/errorlocate/man/errorlocation.Rd | 3 errorlocate-0.1.3/errorlocate/man/errors_removed.Rd | 1 errorlocate-0.1.3/errorlocate/man/expect_values.Rd | 1 errorlocate-0.1.3/errorlocate/man/is_categorical.Rd | 1 errorlocate-0.1.3/errorlocate/man/is_conditional.Rd | 1 errorlocate-0.1.3/errorlocate/man/is_linear.Rd | 1 errorlocate-0.1.3/errorlocate/man/locate_errors.Rd | 5 errorlocate-0.1.3/errorlocate/man/mip_rule.Rd | 1 errorlocate-0.1.3/errorlocate/man/replace_errors.Rd | 5 errorlocate-0.1.3/errorlocate/man/substitute_.Rd | 1 errorlocate-0.1.3/errorlocate/man/translate_mip_lp.Rd | 1 errorlocate-0.1.3/errorlocate/tests/testthat/test-errorlocation-print.txt |only errorlocate-0.1.3/errorlocate/tests/testthat/test-errorlocation-summary.txt |only errorlocate-0.1.3/errorlocate/tests/testthat/test-errorlocation.R |only errorlocate-0.1.3/errorlocate/tests/testthat/test-linear.R | 20 +++ errorlocate-0.1.3/errorlocate/tests/testthat/test-localize-errors.R | 10 + errorlocate-0.1.3/errorlocate/tests/testthat/test-locate_errors.R | 11 + errorlocate-0.1.3/errorlocate/tests/testthat/test-mip.R | 33 +++++ errorlocate-0.1.3/errorlocate/tests/testthat/test-miprule.R | 15 ++ 33 files changed, 214 insertions(+), 68 deletions(-)
Title: Computing Comorbidity Scores
Description: Computing comorbidity scores such as the weighted Charlson score
(Charlson, 1987 <doi:10.1016/0021-9681(87)90171-8>) and the Elixhauser
comorbidity score (Elixhauser, 1998 <doi:10.1097/00005650-199801000-00004>)
using ICD-9-CM or ICD-10 codes (Quan, 2005 <doi:10.1097/01.mlr.0000182534.19832.83>).
Author: Alessandro Gasparini [aut, cre],
Hojjat Salmasian [ctb] (ICD-9-CM scores)
Maintainer: Alessandro Gasparini <ag475@leicester.ac.uk>
Diff between comorbidity versions 0.1.0 dated 2018-03-07 and 0.1.1 dated 2018-03-30
DESCRIPTION | 6 MD5 | 53 NAMESPACE | 8 NEWS.md | 61 R/comorbidity.R | 402 +-- R/data.R | 98 R/sample_diag.R | 130 - R/scores.R | 444 ++-- README.md | 522 ++-- build/vignette.rds |binary inst/CITATION |only inst/doc/comorbidityscores.R | 84 inst/doc/comorbidityscores.Rmd | 658 +++--- inst/doc/comorbidityscores.html | 1226 +++++------ man/comorbidity.Rd | 264 +- man/icd10_2009.Rd | 52 man/icd10_2011.Rd | 52 man/icd9_2015.Rd | 50 man/sample_diag.Rd | 64 tests/testthat.R | 6 tests/testthat/test-charlson-icd10.R | 2542 +++++++++++------------ tests/testthat/test-charlson-icd9.R | 1784 ++++++++-------- tests/testthat/test-comorbidity.R | 1038 ++++----- tests/testthat/test-data.R | 18 tests/testthat/test-elixhauser-icd10.R | 3592 ++++++++++++++++----------------- tests/testthat/test-elixhauser-icd9.R | 2754 ++++++++++++------------- tests/testthat/test-sample_diag.R | 162 - vignettes/comorbidityscores.Rmd | 658 +++--- 28 files changed, 8393 insertions(+), 8335 deletions(-)
Title: Spatial Point Patterns Analysis
Description: Perform first- and second-order multi-scale analyses derived from Ripley K-function, for univariate,
multivariate and marked mapped data in rectangular, circular or irregular shaped sampling windows, with tests of
statistical significance based on Monte Carlo simulations.
Author: Raphael Pelissier [aut],
Francois Goreau [aut],
Philippe Verley [ctb, cre]
Maintainer: Philippe Verley <philippe.verley@ird.fr>
Diff between ads versions 1.5-2.2 dated 2015-01-13 and 1.5-3 dated 2018-03-30
ads-1.5-2.2/ads/src/util.c |only ads-1.5-3/ads/DESCRIPTION | 20 ads-1.5-3/ads/INDEX | 35 ads-1.5-3/ads/MD5 | 38 ads-1.5-3/ads/NAMESPACE | 84 ads-1.5-3/ads/R/fads.R | 2510 +++--- ads-1.5-3/ads/R/plot.fads.R | 2 ads-1.5-3/ads/R/plot.vads.R | 40 ads-1.5-3/ads/R/print.fads.R | 7 ads-1.5-3/ads/R/print.vads.R | 144 ads-1.5-3/ads/R/summary.vads.R | 2 ads-1.5-3/ads/R/triangulate.R | 95 ads-1.5-3/ads/R/util.R | 10 ads-1.5-3/ads/R/vads.R | 601 - ads-1.5-3/ads/man/internal.Rd | 2 ads-1.5-3/ads/src/Zlibs.c |14751 +++++++++++++++++++++------------------- ads-1.5-3/ads/src/Zlibs.h | 248 ads-1.5-3/ads/src/adssub.h | 51 ads-1.5-3/ads/src/init.c |only ads-1.5-3/ads/src/triangulate.c | 78 ads-1.5-3/ads/src/triangulate.h | 10 21 files changed, 9914 insertions(+), 8814 deletions(-)
Title: Integrate INEGI’s (Mexican Stats Office) API with R
Description: Provides functions to download and parse information from INEGI
(Official Mexican statistics agency). To learn more about the API, see <http://www.inegi.org.mx/desarrolladores/default.aspx>.
Author: Eduardo Flores
Maintainer: Eduardo Flores <eduardo@enelmargen.org>
Diff between inegiR versions 1.2.0 dated 2016-02-19 and 2.0.0 dated 2018-03-30
inegiR-1.2.0/inegiR/R/Denue_Inegi.R |only inegiR-1.2.0/inegiR/R/FuncionesAuxiliares.R |only inegiR-1.2.0/inegiR/R/FuncionesAuxiliares_denue.R |only inegiR-1.2.0/inegiR/R/IndicesPrecios.R |only inegiR-1.2.0/inegiR/R/OtrosIndicadores.R |only inegiR-1.2.0/inegiR/R/Serie_Inegi.R |only inegiR-1.2.0/inegiR/R/Tasas.R |only inegiR-1.2.0/inegiR/man/denue_inegi.Rd |only inegiR-1.2.0/inegiR/man/hacer_grid.Rd |only inegiR-1.2.0/inegiR/man/inflacion_ciudades.Rd |only inegiR-1.2.0/inegiR/man/inflacion_estudiantes.Rd |only inegiR-1.2.0/inegiR/man/inflacion_general.Rd |only inegiR-1.2.0/inegiR/man/inflacion_tot.Rd |only inegiR-1.2.0/inegiR/man/serie_inegi_json.Rd |only inegiR-1.2.0/inegiR/man/series_ITAE_estados.Rd |only inegiR-1.2.0/inegiR/man/series_PIB_estados.Rd |only inegiR-1.2.0/inegiR/man/series_actividad_industrial.Rd |only inegiR-1.2.0/inegiR/man/series_balanza_comercial.Rd |only inegiR-1.2.0/inegiR/man/series_balanza_pagos.Rd |only inegiR-1.2.0/inegiR/man/series_crecimiento_regiones.Rd |only inegiR-1.2.0/inegiR/man/series_exportaciones_pais.Rd |only inegiR-1.2.0/inegiR/man/series_opiniones.Rd |only inegiR-1.2.0/inegiR/man/series_produccion_autos.Rd |only inegiR-1.2.0/inegiR/man/series_productividad_const.Rd |only inegiR-1.2.0/inegiR/man/series_productividad_man.Rd |only inegiR-1.2.0/inegiR/man/series_tipocambio.Rd |only inegiR-1.2.0/inegiR/man/tasa_IGAE.Rd |only inegiR-1.2.0/inegiR/man/tasa_PIB.Rd |only inegiR-1.2.0/inegiR/man/tasa_comercio.Rd |only inegiR-1.2.0/inegiR/man/tasa_confianza.Rd |only inegiR-1.2.0/inegiR/man/tasa_desempleo.Rd |only inegiR-1.2.0/inegiR/man/tasa_sectoresYoY.Rd |only inegiR-2.0.0/inegiR/DESCRIPTION | 13 + inegiR-2.0.0/inegiR/MD5 | 110 +++++++++------- inegiR-2.0.0/inegiR/NAMESPACE | 104 +++++++++------ inegiR-2.0.0/inegiR/R/CMDcheckVars.R | 2 inegiR-2.0.0/inegiR/R/v2_IGAE.R |only inegiR-2.0.0/inegiR/R/v2_auto_production.R |only inegiR-2.0.0/inegiR/R/v2_aux.R |only inegiR-2.0.0/inegiR/R/v2_balance_payments.R |only inegiR-2.0.0/inegiR/R/v2_catalog.R |only inegiR-2.0.0/inegiR/R/v2_city_inflation.R |only inegiR-2.0.0/inegiR/R/v2_commerce.R |only inegiR-2.0.0/inegiR/R/v2_confidence.R |only inegiR-2.0.0/inegiR/R/v2_country_exports.R |only inegiR-2.0.0/inegiR/R/v2_denue.R |only inegiR-2.0.0/inegiR/R/v2_denue_grid.R |only inegiR-2.0.0/inegiR/R/v2_denue_stats.R |only inegiR-2.0.0/inegiR/R/v2_econ_sectors.R |only inegiR-2.0.0/inegiR/R/v2_exchange_rate.R |only inegiR-2.0.0/inegiR/R/v2_gdp.R |only inegiR-2.0.0/inegiR/R/v2_inflation.R |only inegiR-2.0.0/inegiR/R/v2_legacy.R |only inegiR-2.0.0/inegiR/R/v2_make_grid.R |only inegiR-2.0.0/inegiR/R/v2_routes.R |only inegiR-2.0.0/inegiR/R/v2_series_eng.R |only inegiR-2.0.0/inegiR/R/v2_series_es.R |only inegiR-2.0.0/inegiR/R/v2_student_inflation.R |only inegiR-2.0.0/inegiR/R/v2_tot.R |only inegiR-2.0.0/inegiR/R/v2_trade_balance.R |only inegiR-2.0.0/inegiR/R/v2_unemployment.R |only inegiR-2.0.0/inegiR/README.md | 20 +-- inegiR-2.0.0/inegiR/data |only inegiR-2.0.0/inegiR/man/GDP.Rd |only inegiR-2.0.0/inegiR/man/IGAE.Rd |only inegiR-2.0.0/inegiR/man/YoY.Rd | 71 +++++----- inegiR-2.0.0/inegiR/man/auto_production.Rd |only inegiR-2.0.0/inegiR/man/balance_payments.Rd |only inegiR-2.0.0/inegiR/man/city_inflation.Rd |only inegiR-2.0.0/inegiR/man/commerce.Rd |only inegiR-2.0.0/inegiR/man/compact_inegi_series.Rd |only inegiR-2.0.0/inegiR/man/confidence.Rd |only inegiR-2.0.0/inegiR/man/country_exports.Rd |only inegiR-2.0.0/inegiR/man/crecer.Rd | 65 ++++----- inegiR-2.0.0/inegiR/man/denue.Rd |only inegiR-2.0.0/inegiR/man/denue_grid.Rd | 113 ++++++++--------- inegiR-2.0.0/inegiR/man/denue_varios_stats.Rd | 90 ++++++------- inegiR-2.0.0/inegiR/man/econ_sectors.Rd |only inegiR-2.0.0/inegiR/man/exchange_rate.Rd |only inegiR-2.0.0/inegiR/man/ext_geo.Rd |only inegiR-2.0.0/inegiR/man/get_gas.Rd |only inegiR-2.0.0/inegiR/man/inegiR-package.Rd | 55 ++++---- inegiR-2.0.0/inegiR/man/inegi_catalog.Rd |only inegiR-2.0.0/inegiR/man/inegi_code.Rd |only inegiR-2.0.0/inegiR/man/inegi_destiny.Rd |only inegiR-2.0.0/inegiR/man/inegi_route.Rd |only inegiR-2.0.0/inegiR/man/inegi_series.Rd |only inegiR-2.0.0/inegiR/man/inflation.Rd |only inegiR-2.0.0/inegiR/man/legacy.Rd |only inegiR-2.0.0/inegiR/man/legacy_productivity.Rd |only inegiR-2.0.0/inegiR/man/legacy_state.Rd |only inegiR-2.0.0/inegiR/man/make_grid.Rd |only inegiR-2.0.0/inegiR/man/ordenar_porconteo.Rd | 65 ++++----- inegiR-2.0.0/inegiR/man/serie_inegi.Rd | 83 ++++++------ inegiR-2.0.0/inegiR/man/student_inflation.Rd |only inegiR-2.0.0/inegiR/man/terms_trade.Rd |only inegiR-2.0.0/inegiR/man/trade_balance.Rd |only inegiR-2.0.0/inegiR/man/ultimos.Rd | 69 +++++----- inegiR-2.0.0/inegiR/man/unemployment.Rd |only 99 files changed, 450 insertions(+), 410 deletions(-)
Title: Age-Structured Population Dynamics Model
Description: Implements discrete time deterministic and stochastic age-structured population dynamics models described in Erguler and others (2016) <doi:10.1371/journal.pone.0149282> and Erguler and others (2017) <doi:10.1371/journal.pone.0174293>.
Author: Kamil Erguler [aut, cre]
Maintainer: Kamil Erguler <k.erguler@cyi.ac.cy>
Diff between albopictus versions 0.1 dated 2018-03-19 and 0.2 dated 2018-03-30
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/spop.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Convert Data from and to 'GeoJSON' or 'TopoJSON'
Description: Convert data to 'GeoJSON' or 'TopoJSON' from various R classes,
including vectors, lists, data frames, shape files, and spatial classes.
'geojsonio' does not aim to replace packages like 'sp', 'rgdal', 'rgeos',
but rather aims to be a high level client to simplify conversions of data
from and to 'GeoJSON' and 'TopoJSON'.
Author: Scott Chamberlain [aut, cre],
Andy Teucher [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between geojsonio versions 0.5.0 dated 2017-11-10 and 0.6.0 dated 2018-03-30
DESCRIPTION | 18 ++-- LICENSE | 2 MD5 | 52 ++++++------ NAMESPACE | 7 + NEWS.md | 17 ++++ R/geo_topo.R | 66 ++++++++++++--- R/geojson_json.R | 68 +++++++++++----- R/geojson_sf.R |only R/geojson_sp.R | 41 +++++---- R/geojsonio-package.r | 3 R/topojson_write.R | 148 ++++++++++++++++++++++------------- R/zzz.r | 3 README.md | 9 -- build/vignette.rds |binary inst/img/unnamed-chunk-21-1.png |binary inst/img/unnamed-chunk-23-1.png |binary man/geo2topo.Rd | 35 +++++++- man/geojson_json.Rd | 18 +++- man/geojson_sf.Rd |only man/geojson_sp.Rd | 15 +-- man/geojsonio.Rd | 2 man/topojson_json.Rd | 7 + man/topojson_write.Rd | 11 ++ tests/testthat/test-as.json.R | 10 +- tests/testthat/test-geo_topo.R |only tests/testthat/test-geojson_json.R | 6 + tests/testthat/test-geojson_sf.R |only tests/testthat/test-geojson_sp.R | 21 ++++ tests/testthat/test-topojson_write.R | 10 ++ 29 files changed, 406 insertions(+), 163 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-16 0.3-15
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-25 0.1.2
2015-11-12 0.1.1
2015-10-24 0.1