Title: Numerical Weather Predictions
Description: Access to several Numerical Weather Prediction services both in raster format and as a time series for a location. Currently it works with GFS, MeteoGalicia, NAM, and RAP.
Author: Oscar Perpinan Lamigueiro [cre, aut],
Marcelo Pinho Almeida [ctb]
Maintainer: Oscar Perpinan Lamigueiro <oscar.perpinan@gmail.com>
Diff between meteoForecast versions 0.51 dated 2017-04-01 and 0.52 dated 2018-04-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/composeURL.R | 2 +- R/grepVar.R | 8 +++++++- R/rasterMeteoGalicia.R | 5 +++-- 5 files changed, 19 insertions(+), 12 deletions(-)
Title: Data Sets from the History of Statistics and Data Visualization
Description: The 'HistData' package provides a collection of small data sets
that are interesting and important in the history of statistics and data
visualization. The goal of the package is to make these available, both for
instructional use and for historical research. Some of these present interesting
challenges for graphics or analysis in R.
Author: Michael Friendly [aut, cre],
Stephane Dray [ctb],
Hadley Wickham [ctb],
James Hanley [ctb],
Dennis Murphy [ctb],
Peter Li [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between HistData versions 0.8-2 dated 2017-08-16 and 0.8-4 dated 2018-04-04
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++----------- NEWS | 10 ++++++++++ README.md |only build/vignette.rds |binary inst/doc/Snow_deaths-duplicates.html | 24 ++++++++++++------------ man/Arbuthnot.Rd | 14 +++++++++++++- man/Cholera.Rd | 25 +++++++++++++------------ man/Guerry.Rd | 14 +++++++------- man/HistData-package.Rd | 4 ++-- man/OldMaps.Rd | 2 +- man/Quarrels.Rd | 6 +++--- man/Yeast.Rd | 2 +- 13 files changed, 78 insertions(+), 54 deletions(-)
Title: Functions and Add-Ins for Working with 'data.world' Data Sets
and Projects
Description: High-level tools for working with 'data.world' data sets. 'data.world' is a platform
where you can find interesting data, store and showcase your own data and data projects,
and find and collaborate with other members. In addition to exploring, querying and
charting data on the data.world site, you can access data via 'API' endpoints and
integrations. Use this package to access, query and explore data sets, and to
publish your insights. Visit <https://data.world>, for additional information.
Author: Rafael Pereira [aut, cre],
Triet Le [aut],
Bryon Jacob [aut],
Scott Came [aut]
Maintainer: Rafael Pereira <rafael.pereira@data.world>
Diff between data.world versions 1.2.0 dated 2018-01-12 and 1.2.2 dated 2018-04-04
data.world-1.2.0/data.world/man/set_dw_config.Rd |only data.world-1.2.2/data.world/DESCRIPTION | 8 +- data.world-1.2.2/data.world/MD5 | 21 +++--- data.world-1.2.2/data.world/NEWS.md | 11 +++ data.world-1.2.2/data.world/R/insight-addin.R | 31 ++++++--- data.world-1.2.2/data.world/R/zzz.R | 34 +++++++--- data.world-1.2.2/data.world/README.md | 19 +++++ data.world-1.2.2/data.world/build/vignette.rds |binary data.world-1.2.2/data.world/inst/doc/query.html | 28 ++++---- data.world-1.2.2/data.world/inst/doc/quickstart.html | 12 +-- data.world-1.2.2/data.world/man/configure_package.Rd |only data.world-1.2.2/data.world/man/is_attached.Rd |only data.world-1.2.2/data.world/tests/testthat/test_insight-addin.R | 8 ++ 13 files changed, 121 insertions(+), 51 deletions(-)
Title: Analyses of Phylogenetics and Evolution
Description: Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Author: Emmanuel Paradis [aut, cre, cph],
Simon Blomberg [aut, cph],
Ben Bolker [aut, cph],
Joseph Brown [aut, cph],
Julien Claude [aut, cph],
Hoa Sien Cuong [aut, cph],
Richard Desper [aut, cph],
Gilles Didier [aut, cph],
Benoit Durand [aut, cph],
Julien Dutheil [aut, cph],
RJ Ewing [aut, cph],
Olivier Gascuel [aut, cph],
Thomas Guillerme [aut, cph],
Christoph Heibl [aut, cph],
Anthony Ives [aut, cph],
Bradley Jones [aut, cph],
Franz Krah [aut, cph],
Daniel Lawson [aut, cph],
Vincent Lefort [aut, cph],
Pierre Legendre [aut, cph],
Jim Lemon [aut, cph],
Rosemary McCloskey [aut, cph],
Johan Nylander [aut, cph],
Rainer Opgen-Rhein [aut, cph],
Andrei-Alin Popescu [aut, cph],
Manuela Royer-Carenzi [aut, cph],
Klaus Schliep [aut, cph],
Korbinian Strimmer [aut, cph],
Damien de Vienne [aut, cph]
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Diff between ape versions 5.0 dated 2017-10-30 and 5.1 dated 2018-04-04
DESCRIPTION | 12 +- MD5 | 80 ++++++------- NAMESPACE | 16 +- R/DNA.R | 73 ++++++++---- R/MoranI.R | 4 R/as.bitsplits.R | 21 ++- R/as.phylo.R | 59 +++++---- R/bind.tree.R | 10 - R/branching.times.R | 8 + R/chronos.R | 15 +- R/clustal.R | 232 +++++++++++++++++++++++++++++++-------- R/comparePhylo.R |only R/dist.topo.R | 2 R/drop.tip.R | 21 ++- R/mantel.test.R | 14 +- R/nj.R | 3 R/node.dating.R | 14 +- R/plot.phylo.R | 11 + R/read.dna.R | 14 +- R/rtree.R | 59 +++++---- R/write.dna.R | 42 ++++++- R/write.nexus.data.R | 37 ++++-- build/vignette.rds |binary inst/CITATION | 2 inst/doc/MoranI.pdf |binary man/AAbin.Rd | 9 + man/DNAbin.Rd | 7 - man/all.equal.phylo.Rd | 2 man/ape-internal.Rd | 5 man/as.bitsplits.Rd | 6 - man/clustal.Rd | 69 ++++++----- man/comparePhylo.Rd |only man/dist.dna.Rd | 1 man/dist.topo.Rd | 1 man/mantel.test.Rd | 18 ++- man/node.dating.Rd | 46 +++---- man/read.dna.Rd | 11 + man/write.dna.Rd | 23 +++ man/write.nexus.data.Rd | 28 ++-- src/ape.c | 14 +- src/dist_dna.c | 26 ++-- src/read_dna.c | 284 +++++++++++++++++++++++++++++++++++++++--------- 42 files changed, 902 insertions(+), 397 deletions(-)
Title: The Official SolveBio API Client
Description: R language bindings for SolveBio's API.
SolveBio is a biomedical knowledge hub that enables life science
organizations to collect and harmonize the complex, disparate
"multi-omic" data essential for today's R&D and BI needs.
For more information, visit <https://www.solvebio.com>.
Author: David Caplan
Maintainer: David Caplan <dcaplan@solvebio.com>
Diff between solvebio versions 2.3.1 dated 2018-02-01 and 2.4.0 dated 2018-04-04
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NAMESPACE | 1 + NEWS.md | 6 ++++++ R/dataset.R | 33 +++++++++++++++++++++++++++++++++ R/solvebio.R | 18 +++++++++++++++--- R/zzz.R | 8 ++++++++ man/Dataset.fields.Rd |only 8 files changed, 74 insertions(+), 13 deletions(-)
Title: Smooth and Tidy Spatial Features
Description: Tools for smoothing and tidying spatial features (i.e. lines and
polygons) to make them more aesthetically pleasing. Smooth curves, fill
holes, and remove small fragments from lines and polygons.
Author: Matthew Strimas-Mackey [aut, cre]
(<https://orcid.org/0000-0001-8929-7776>)
Maintainer: Matthew Strimas-Mackey <mstrimas@gmail.com>
Diff between smoothr versions 0.0.1 dated 2018-03-19 and 0.1.0 dated 2018-04-04
DESCRIPTION | 31 ++++++------- MD5 | 53 +++++++++++++++------- NAMESPACE | 11 ++++ NEWS.md | 11 ++++ R/data.r | 10 ++++ R/densify.r |only R/drop-crumbs.r |only R/fill-holes.r |only R/smooth-chaikin.r | 6 +- R/smooth-densify.r |only R/smooth-ksmooth.r |only R/smooth-spline.r | 16 +++--- R/smooth.r | 81 ++++++++++++++++++++++++++--------- R/utils.r | 17 +++++++ build |only data/jagged_lines.rda |binary data/jagged_polygons.rda |binary data/jagged_raster.rda |only inst |only man/densify.Rd |only man/drop_crumbs.Rd |only man/fill_holes.Rd |only man/jagged_raster.Rd |only man/smooth.Rd | 61 +++++++++++++++++++++----- man/smooth_chaikin.Rd | 6 +- man/smooth_densify.Rd |only man/smooth_ksmooth.Rd |only man/smooth_spline.Rd | 16 +++--- tests/testthat/test_drop-crumbs.r |only tests/testthat/test_fill-holes.r |only tests/testthat/test_smooth-chaikin.r | 2 tests/testthat/test_smooth-densify.r |only tests/testthat/test_smooth-ksmooth.r |only tests/testthat/test_smooth-spline.r | 2 tests/testthat/test_smooth.r | 45 ++++++++++++++++++- vignettes |only 36 files changed, 279 insertions(+), 89 deletions(-)
Title: Inference Using Simulation
Description: Implements functions for simulation-based inference. In particular, implements functions to perform likelihood inference from data summaries whose distributions are simulated (Rousset et al. 2017 <doi:10.1111/1755-0998.12627>).
Author: François Rousset [aut, cre, cph]
Maintainer: François Rousset <francois.rousset@umontpellier.fr>
Diff between Infusion versions 1.1.8 dated 2017-11-10 and 1.2.0 dated 2018-04-04
DESCRIPTION | 15 ++- MD5 | 44 +++++------ NAMESPACE | 35 ++++---- R/Rmixmod.R | 30 ++++++- R/SLikSQuant.R | 10 +- R/coresWrapper.R | 87 +++------------------- R/infer_logLs.R | 43 ++++++---- R/infer_surface.R | 61 ++++++++++----- R/jointDens.R | 185 +++++++++++++++++++++++++++++++++-------------- R/joint_dens_mclust.R |only R/mclust.R |only R/plot.SLik.R | 2 R/plot.SLik_j.R | 4 - R/profile.R | 8 +- R/project.R | 14 +-- R/quantiles.R | 4 - R/undocumentedFns.R | 19 ++++ inst/NEWS.Rd | 15 +++ man/Infusion-internal.Rd | 1 man/add.simulation.Rd | 4 - man/infer_jointDens.Rd | 8 +- man/infer_logLs.Rd | 12 +-- man/plot.SLik.Rd | 2 man/project.Rd | 2 24 files changed, 357 insertions(+), 248 deletions(-)
Title: The Merging Path Plot
Description: The Merging Path Plot is a methodology for adaptive fusing of k-groups
with likelihood-based model selection. This package contains tools for
exploration and visualization of k-group dissimilarities.
Comparison of k-groups is one of the most important issues
in exploratory analyses and it has zillions of applications.
The traditional approach is to use pairwise post hoc tests
in order to verify which groups differ significantly. However,
this approach fails with a large number of groups in both interpretation
and visualization layer.
The Merging Path Plot solves this problem by using an easy-to-understand
description of dissimilarity among groups based on Likelihood Ratio Test (LRT) statistic.
Work on this package was financially
supported by the 'NCN Opus grant 2016/21/B/ST6/02176'.
Author: Agnieszka Sitko [aut, cre],
Aleksandra Grudziąż [aut],
Przemyslaw Biecek [aut, ths]
Maintainer: Agnieszka Sitko <ag.agnieszka.sitko@gmail.com>
Diff between factorMerger versions 0.3.5 dated 2018-02-21 and 0.3.6 dated 2018-04-04
DESCRIPTION | 6 MD5 | 16 - NAMESPACE | 2 NEWS.md | 7 R/visualizations.R | 25 ++ inst/doc/brca.html | 10 inst/doc/factorMerger.html | 517 +++++++++++++++++++++++---------------------- inst/doc/pisa2012.html | 10 man/plotResponse.Rd |only man/plotTree.Rd |only 10 files changed, 322 insertions(+), 271 deletions(-)
Title: Analyzing Remotely Sensed Forest Data
Description: Provides tools for analyzing remotely sensed forest data, including functions for detecting treetops from canopy models, outlining tree crowns and generating spatial statistics.
Author: Andrew Plowright
Maintainer: Andrew Plowright <andrew.plowright@alumni.ubc.ca>
Diff between ForestTools versions 0.1.5 dated 2017-09-08 and 0.2.0 dated 2018-04-04
ForestTools-0.1.5/ForestTools/R/SegmentCrowns.R |only ForestTools-0.1.5/ForestTools/R/SpatialStatistics.R |only ForestTools-0.1.5/ForestTools/R/TreeTopFinder.R |only ForestTools-0.1.5/ForestTools/man/SegmentCrowns.Rd |only ForestTools-0.1.5/ForestTools/man/SpatialStatistics.Rd |only ForestTools-0.1.5/ForestTools/man/TreeTopFinder.Rd |only ForestTools-0.1.5/ForestTools/tests/testthat/testCHMtiles.Rda |only ForestTools-0.1.5/ForestTools/tests/testthat/test_SegmentCrowns.R |only ForestTools-0.1.5/ForestTools/tests/testthat/test_SpatialStatistics.R |only ForestTools-0.1.5/ForestTools/tests/testthat/test_TreeTopFinder.R |only ForestTools-0.2.0/ForestTools/DESCRIPTION | 13 - ForestTools-0.2.0/ForestTools/MD5 | 76 +++--- ForestTools-0.2.0/ForestTools/NAMESPACE | 6 ForestTools-0.2.0/ForestTools/NEWS.md | 45 ++- ForestTools-0.2.0/ForestTools/R/ForestTools.R | 4 ForestTools-0.2.0/ForestTools/R/Kootenay.R | 12 ForestTools-0.2.0/ForestTools/R/Quesnel.R | 8 ForestTools-0.2.0/ForestTools/R/mwcs.R |only ForestTools-0.2.0/ForestTools/R/sp_summarise.R |only ForestTools-0.2.0/ForestTools/R/vwf.R |only ForestTools-0.2.0/ForestTools/R/zzz.R |only ForestTools-0.2.0/ForestTools/build/vignette.rds |binary ForestTools-0.2.0/ForestTools/inst/doc/inventoryAttributes.R | 4 ForestTools-0.2.0/ForestTools/inst/doc/inventoryAttributes.Rmd | 10 ForestTools-0.2.0/ForestTools/inst/doc/inventoryAttributes.html | 16 - ForestTools-0.2.0/ForestTools/inst/doc/polygonalCrownMaps.R | 2 ForestTools-0.2.0/ForestTools/inst/doc/polygonalCrownMaps.Rmd | 10 ForestTools-0.2.0/ForestTools/inst/doc/polygonalCrownMaps.html | 16 - ForestTools-0.2.0/ForestTools/inst/doc/treetopAnalysis.R | 18 - ForestTools-0.2.0/ForestTools/inst/doc/treetopAnalysis.Rmd | 48 +-- ForestTools-0.2.0/ForestTools/inst/doc/treetopAnalysis.html | 122 +++++----- ForestTools-0.2.0/ForestTools/man/ForestTools.Rd | 4 ForestTools-0.2.0/ForestTools/man/kootenayBlocks.Rd | 2 ForestTools-0.2.0/ForestTools/man/kootenayCrowns.Rd | 4 ForestTools-0.2.0/ForestTools/man/kootenayTrees.Rd | 6 ForestTools-0.2.0/ForestTools/man/mcws.Rd |only ForestTools-0.2.0/ForestTools/man/quesnelBlocks.Rd | 2 ForestTools-0.2.0/ForestTools/man/quesnelTrees.Rd | 6 ForestTools-0.2.0/ForestTools/man/sp_summarise.Rd |only ForestTools-0.2.0/ForestTools/man/vwf.Rd |only ForestTools-0.2.0/ForestTools/tests/testthat/latlongCHM.Rda |only ForestTools-0.2.0/ForestTools/tests/testthat/lowResCHM.Rda |only ForestTools-0.2.0/ForestTools/tests/testthat/orphantrees.Rda |binary ForestTools-0.2.0/ForestTools/tests/testthat/testTrees.Rda |binary ForestTools-0.2.0/ForestTools/tests/testthat/test_mcws.R |only ForestTools-0.2.0/ForestTools/tests/testthat/test_sp_summarise.R |only ForestTools-0.2.0/ForestTools/tests/testthat/test_vwf.R |only ForestTools-0.2.0/ForestTools/vignettes/inventoryAttributes.Rmd | 10 ForestTools-0.2.0/ForestTools/vignettes/polygonalCrownMaps.Rmd | 10 ForestTools-0.2.0/ForestTools/vignettes/treetopAnalysis.Rmd | 48 +-- 50 files changed, 264 insertions(+), 238 deletions(-)
Title: Optimized Kernel Regularized Least Squares
Description: Functions for Kernel-Regularized Least Squares optimized for speed and memory usage are provided along with visualization tools. For working papers, sample code, and recent presentations visit <https://sites.google.com/site/petemohanty/software/>. bigKRLS, as well its dependencies, require current versions of R and its compilers (and RStudio if used). For details, see <https://github.com/rdrr1990/bigKRLS/blob/master/INSTALL.md>.
Author: Pete Mohanty [aut, cre],
Robert Shaffer [aut]
Maintainer: Pete Mohanty <pete.mohanty@gmail.com>
Diff between bigKRLS versions 2.0.4 dated 2017-10-24 and 3.0.0 dated 2018-04-04
bigKRLS-2.0.4/bigKRLS/src/bigderiv_v2.cpp |only bigKRLS-3.0.0/bigKRLS/DESCRIPTION | 9 bigKRLS-3.0.0/bigKRLS/MD5 | 23 bigKRLS-3.0.0/bigKRLS/R/RcppExports.R | 16 bigKRLS-3.0.0/bigKRLS/R/bigKRLS.R | 605 ++-------------- bigKRLS-3.0.0/bigKRLS/R/bigKRLS_Rcpp_functions.R |only bigKRLS-3.0.0/bigKRLS/inst/doc/bigKRLS_basics.html | 74 - bigKRLS-3.0.0/bigKRLS/man/bigKRLS.Rd | 14 bigKRLS-3.0.0/bigKRLS/src/RcppExports.cpp | 41 - bigKRLS-3.0.0/bigKRLS/src/bigderiv_v3.cpp |only bigKRLS-3.0.0/bigKRLS/src/crossprod.cpp | 48 + bigKRLS-3.0.0/bigKRLS/src/eigen.cpp | 40 - bigKRLS-3.0.0/bigKRLS/src/solveforc.cpp | 50 - bigKRLS-3.0.0/bigKRLS/tests/testthat/test_basic_usage.R | 21 14 files changed, 286 insertions(+), 655 deletions(-)
Title: Compute scagnostics - scatterplot diagnostics
Description: Calculates graph theoretic scagnostics. Scagnostics
describe various measures of interest for pairs of variables,
based on their appearance on a scatterplot. They are useful
tool for discovering interesting or unusual scatterplots from a
scatterplot matrix, without having to look at every individual
plot.
Author: Lee Wilkinson <leland.wilkinson@gmail.com> and Anushka Anand
Maintainer: Simon Urbanek <simon.urbanek@r-project.org>
Diff between scagnostics versions 0.2-4 dated 2012-11-05 and 0.2-4.1 dated 2018-04-04
DESCRIPTION | 8 +++++--- MD5 | 4 ++-- NAMESPACE | 5 +++++ 3 files changed, 12 insertions(+), 5 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-27 0.9.3
2018-02-08 0.7.1
2017-11-06 0.5
Title: Interactive Networks with R
Description: Create interactive networked coincidences. It joins the data analysis power of R to study coincidences and the visualization libraries of JavaScript in one package.
Author: Modesto Escobar <modesto@usal.es>,
David Barrios <metal@usal.es>,
Carlos Prieto <cprietos@usal.es>,
Luis Martinez-Uribe <lmartinez@usal.es>.
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between netCoin versions 0.2.7 dated 2018-01-29 and 0.2.8 dated 2018-04-04
netCoin-0.2.7/netCoin/man/layoutPolygon.Rd |only netCoin-0.2.8/netCoin/DESCRIPTION | 10 netCoin-0.2.8/netCoin/MD5 | 51 netCoin-0.2.8/netCoin/NAMESPACE | 12 netCoin-0.2.8/netCoin/R/barplot.R | 10 netCoin-0.2.8/netCoin/R/multigraph.R | 4 netCoin-0.2.8/netCoin/R/netcoin.R | 695 +++++++++---- netCoin-0.2.8/netCoin/R/network.R | 18 netCoin-0.2.8/netCoin/R/timeline.R | 6 netCoin-0.2.8/netCoin/R/utils.R | 5 netCoin-0.2.8/netCoin/build/vignette.rds |binary netCoin-0.2.8/netCoin/inst/doc/netCoin.html | 381 +++++-- netCoin-0.2.8/netCoin/inst/www/en.js | 3 netCoin-0.2.8/netCoin/inst/www/es.js | 3 netCoin-0.2.8/netCoin/inst/www/multigraph.js | 2 netCoin-0.2.8/netCoin/inst/www/network.js | 1431 +++++++++++++++------------ netCoin-0.2.8/netCoin/inst/www/polygraph.js | 2 netCoin-0.2.8/netCoin/inst/www/styles.css | 16 netCoin-0.2.8/netCoin/man/allNet.Rd | 86 - netCoin-0.2.8/netCoin/man/barCoin.Rd | 4 netCoin-0.2.8/netCoin/man/cbarCoin.Rd | 2 netCoin-0.2.8/netCoin/man/incTime.Rd |only netCoin-0.2.8/netCoin/man/layoutCircle.Rd |only netCoin-0.2.8/netCoin/man/layoutGrid.Rd |only netCoin-0.2.8/netCoin/man/mobileEdges.Rd |only netCoin-0.2.8/netCoin/man/netCoin.Rd | 31 netCoin-0.2.8/netCoin/man/netCorr.Rd | 59 - netCoin-0.2.8/netCoin/man/pathCoin.Rd |only netCoin-0.2.8/netCoin/man/savePajek.Rd |only netCoin-0.2.8/netCoin/man/surCoin.Rd | 64 - 30 files changed, 1762 insertions(+), 1133 deletions(-)
Title: Power Estimates for ANOVA Designs
Description: Functions for bootstrapping the power of ANOVA designs
based on estimated means and standard deviations of the conditions.
Please refer to the documentation of the boot.power.anova() function
for further details.
Author: Frank Papenmeier [aut, cre]
Maintainer: Frank Papenmeier <frank.papenmeier@uni-tuebingen.de>
Diff between powerbydesign versions 1.0.3 dated 2016-10-07 and 1.0.4 dated 2018-04-04
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 7 +++++++ R/boot.power.anova.R | 15 ++++++++++++--- man/boot.power.anova.Rd | 1 - man/design.anova.Rd | 3 +-- man/plot.power_by_samplesize.Rd | 1 - 7 files changed, 31 insertions(+), 18 deletions(-)
Title: General-to-Specific (GETS) Modelling and Indicator Saturation
Methods
Description: Automated General-to-Specific (GETS) modelling of the mean and variance of a regression, and indicator saturation methods for detecting and testing for structural breaks in the mean.
Author: Genaro Sucarrat [aut, cre], Felix Pretis [aut], James Reade [aut]
Maintainer: Genaro Sucarrat <genaro.sucarrat@bi.no>
Diff between gets versions 0.14 dated 2018-01-07 and 0.15 dated 2018-04-04
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS | 13 +++++++++++++ R/gets-internal.R | 2 +- R/getsFun.R | 2 ++ R/isat.R | 25 ++++++++++++++++--------- R/ols.R | 2 +- data/hpdata.rda |binary data/infldata.rda |binary data/so2data.rda |binary data/sp500data.rda |binary man/gets-package.Rd | 4 ++-- man/isat.Rd | 4 ++-- 13 files changed, 53 insertions(+), 31 deletions(-)
Title: Cluster-Robust (Sandwich) Variance Estimators with Small-Sample
Corrections
Description: Provides several cluster-robust variance estimators (i.e.,
sandwich estimators) for ordinary and weighted least squares linear regression
models, including the bias-reduced linearization estimator introduced by Bell
and McCaffrey (2002)
<http://www.statcan.gc.ca/pub/12-001-x/2002002/article/9058-eng.pdf> and
developed further by Pustejovsky and Tipton (2017)
<DOI:10.1080/07350015.2016.1247004>. The package includes functions for estimating
the variance- covariance matrix and for testing single- and multiple-
contrast hypotheses based on Wald test statistics. Tests of single regression
coefficients use Satterthwaite or saddle-point corrections. Tests of multiple-
contrast hypotheses use an approximation to Hotelling's T-squared distribution.
Methods are provided for a variety of fitted models, including lm() and mlm
objects, glm(), ivreg (from package 'AER'), plm() (from package 'plm'), gls()
and lme() (from 'nlme'), robu() (from 'robumeta'), and rma.uni() and rma.mv()
(from 'metafor').
Author: James Pustejovsky [aut, cre]
Maintainer: James Pustejovsky <jepusto@gmail.com>
Diff between clubSandwich versions 0.3.0 dated 2017-11-13 and 0.3.1 dated 2018-04-04
DESCRIPTION | 41 - MD5 | 70 +- NEWS | 5 R/clubSandwich.R | 3 R/coef_test.R | 110 ++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Robust-Variance-Estimation-with-clubSandwich.html | 188 ++++++ inst/doc/meta-analysis-with-CRVE.html | 346 +++++++++-- inst/doc/panel-data-CRVE.html | 395 +++++++++---- man/AchievementAwardsRCT.Rd | 1 man/MortalityRates.Rd | 1 man/SATcoaching.Rd | 1 man/Wald_test.Rd | 1 man/coef_test.Rd | 23 man/dropoutPrevention.Rd | 1 man/impute_covariance_matrix.Rd | 1 man/vcovCR.Rd | 1 man/vcovCR.glm.Rd | 1 man/vcovCR.gls.Rd | 1 man/vcovCR.ivreg.Rd | 1 man/vcovCR.lm.Rd | 1 man/vcovCR.lme.Rd | 1 man/vcovCR.mlm.Rd | 1 man/vcovCR.plm.Rd | 1 man/vcovCR.rma.mv.Rd | 1 man/vcovCR.rma.uni.Rd | 1 man/vcovCR.robu.Rd | 1 tests/testthat.R | 2 tests/testthat/test_Wald.R | 2 tests/testthat/test_coef.R | 36 + tests/testthat/test_glm_logit.R | 14 tests/testthat/test_lm.R | 20 tests/testthat/test_lme_2level.R | 4 tests/testthat/test_lme_3level.R | 46 - tests/testthat/test_rma-uni.R | 2 36 files changed, 1024 insertions(+), 300 deletions(-)
Title: Matrix Functions for Teaching and Learning Linear Algebra and
Multivariate Statistics
Description: A collection of matrix functions for teaching and learning matrix
linear algebra as used in multivariate statistical methods. These functions are
mainly for tutorial purposes in learning matrix algebra ideas using R. In some
cases, functions are provided for concepts available elsewhere in R, but where
the function call or name is not obvious. In other cases, functions are provided
to show or demonstrate an algorithm. In addition, a collection of functions are
provided for drawing vector diagrams in 2D and 3D.
Author: Michael Friendly [aut, cre],
John Fox [aut],
Phil Chalmers [aut],
Georges Monette [ctb],
Gaston Sanchez [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between matlib versions 0.8.1 dated 2016-09-17 and 0.9.1 dated 2018-04-04
matlib-0.8.1/matlib/R/eig.R |only matlib-0.8.1/matlib/R/power_method.R |only matlib-0.8.1/matlib/R/showeqn.R |only matlib-0.8.1/matlib/man/eig.Rd |only matlib-0.8.1/matlib/man/point_on_line.Rd |only matlib-0.8.1/matlib/man/power_method.Rd |only matlib-0.8.1/matlib/man/row_cofactors.Rd |only matlib-0.8.1/matlib/man/row_minors.Rd |only matlib-0.9.1/matlib/DESCRIPTION | 24 matlib-0.9.1/matlib/MD5 | 219 +- matlib-0.9.1/matlib/NAMESPACE | 55 matlib-0.9.1/matlib/NEWS.md | 39 matlib-0.9.1/matlib/R/Eigen.R |only matlib-0.9.1/matlib/R/GramSchmidt.R |only matlib-0.9.1/matlib/R/J.R | 1 matlib-0.9.1/matlib/R/LU.R | 88 matlib-0.9.1/matlib/R/QR.R | 3 matlib-0.9.1/matlib/R/R.R | 1 matlib-0.9.1/matlib/R/Solve.R | 24 matlib-0.9.1/matlib/R/angle.R |only matlib-0.9.1/matlib/R/corner.R | 57 matlib-0.9.1/matlib/R/determinants.R | 138 + matlib-0.9.1/matlib/R/gaussian-elimination.R | 98 matlib-0.9.1/matlib/R/gsorth.R | 7 matlib-0.9.1/matlib/R/is_square.R | 3 matlib-0.9.1/matlib/R/len.R | 4 matlib-0.9.1/matlib/R/matlib.R | 36 matlib-0.9.1/matlib/R/matrix2latex.R | 10 matlib-0.9.1/matlib/R/mpower.R | 3 matlib-0.9.1/matlib/R/plotEqn.R | 23 matlib-0.9.1/matlib/R/powerMethod.R |only matlib-0.9.1/matlib/R/printMatEqn.R |only matlib-0.9.1/matlib/R/proj.R | 1 matlib-0.9.1/matlib/R/regvec3d.R | 35 matlib-0.9.1/matlib/R/rowops.R | 5 matlib-0.9.1/matlib/R/showEig.R | 6 matlib-0.9.1/matlib/R/showEqn.R |only matlib-0.9.1/matlib/R/svdDemo.R |only matlib-0.9.1/matlib/R/swp.R | 1 matlib-0.9.1/matlib/R/symMat.R |only matlib-0.9.1/matlib/R/tr.R | 1 matlib-0.9.1/matlib/R/util.R |only matlib-0.9.1/matlib/R/vandermode.R | 1 matlib-0.9.1/matlib/R/vec.R | 1 matlib-0.9.1/matlib/R/vectors.R | 1 matlib-0.9.1/matlib/R/vectors3d.R | 9 matlib-0.9.1/matlib/build/vignette.rds |binary matlib-0.9.1/matlib/inst/doc/det-ex1.Rmd | 6 matlib-0.9.1/matlib/inst/doc/det-ex1.html | 50 matlib-0.9.1/matlib/inst/doc/det-ex2.R | 6 matlib-0.9.1/matlib/inst/doc/det-ex2.Rmd | 8 matlib-0.9.1/matlib/inst/doc/det-ex2.html | 48 matlib-0.9.1/matlib/inst/doc/eigen-ex1.Rmd | 2 matlib-0.9.1/matlib/inst/doc/eigen-ex1.html | 35 matlib-0.9.1/matlib/inst/doc/eigen-ex2.Rmd | 2 matlib-0.9.1/matlib/inst/doc/eigen-ex2.html | 48 matlib-0.9.1/matlib/inst/doc/ginv.Rmd | 2 matlib-0.9.1/matlib/inst/doc/ginv.html | 32 matlib-0.9.1/matlib/inst/doc/gramreg.Rmd | 2 matlib-0.9.1/matlib/inst/doc/gramreg.html | 74 matlib-0.9.1/matlib/inst/doc/inv-ex1.html | 58 matlib-0.9.1/matlib/inst/doc/inv-ex2.html | 38 matlib-0.9.1/matlib/inst/doc/linear-equations.R | 13 matlib-0.9.1/matlib/inst/doc/linear-equations.Rmd | 35 matlib-0.9.1/matlib/inst/doc/linear-equations.html | 2148 +++++++++++++++++---- matlib-0.9.1/matlib/man/Det.Rd |only matlib-0.9.1/matlib/man/Eigen.Rd |only matlib-0.9.1/matlib/man/Ginv.Rd | 7 matlib-0.9.1/matlib/man/GramSchmidt.Rd |only matlib-0.9.1/matlib/man/Inverse.Rd | 1 matlib-0.9.1/matlib/man/J.Rd | 1 matlib-0.9.1/matlib/man/LU.Rd | 12 matlib-0.9.1/matlib/man/Proj.Rd | 9 matlib-0.9.1/matlib/man/QR.Rd | 7 matlib-0.9.1/matlib/man/R.Rd | 1 matlib-0.9.1/matlib/man/SVD.Rd | 11 matlib-0.9.1/matlib/man/Solve.Rd | 29 matlib-0.9.1/matlib/man/adjoint.Rd |only matlib-0.9.1/matlib/man/angle.Rd |only matlib-0.9.1/matlib/man/arc.Rd | 3 matlib-0.9.1/matlib/man/arrows3d.Rd | 9 matlib-0.9.1/matlib/man/buildTmat.Rd | 6 matlib-0.9.1/matlib/man/cholesky.Rd | 7 matlib-0.9.1/matlib/man/circle3d.Rd | 1 matlib-0.9.1/matlib/man/cofactor.Rd | 14 matlib-0.9.1/matlib/man/cone3d.Rd | 7 matlib-0.9.1/matlib/man/corner.Rd | 5 matlib-0.9.1/matlib/man/echelon.Rd | 26 matlib-0.9.1/matlib/man/gaussianElimination.Rd | 10 matlib-0.9.1/matlib/man/gsorth.Rd | 7 matlib-0.9.1/matlib/man/is_square.Rd | 3 matlib-0.9.1/matlib/man/len.Rd | 4 matlib-0.9.1/matlib/man/matlib.Rd | 39 matlib-0.9.1/matlib/man/matrix2latex.Rd | 3 matlib-0.9.1/matlib/man/minor.Rd | 14 matlib-0.9.1/matlib/man/mpower.Rd | 3 matlib-0.9.1/matlib/man/plot.regvec3d.Rd | 16 matlib-0.9.1/matlib/man/plotEqn.Rd | 9 matlib-0.9.1/matlib/man/plotEqn3d.Rd | 15 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matlib-0.9.1/matlib/vignettes/gramreg.Rmd | 2 matlib-0.9.1/matlib/vignettes/linear-equations.Rmd | 35 125 files changed, 2895 insertions(+), 1052 deletions(-)
Title: Inferring the Topology of Omics Data
Description: Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples. We based this methodology on the RV coefficient (Robert & Escoufier, 1976, <doi:10.2307/2347233>), a measure of matrix correlation, which we have extended for partial matrix correlations and binary data (Aben et al., 2018, <doi:10.1101/293993>).
Author: Nanne Aben
Maintainer: Nanne Aben <nanne.aben@gmail.com>
Diff between iTOP versions 1.0.0 dated 2018-03-22 and 1.0.1 dated 2018-04-04
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 5 ++++- R/functions.R | 4 ++-- inst/doc/vignette.Rmd | 6 +++--- inst/doc/vignette.html | 10 +++++----- man/compute.config.matrices.Rd | 2 +- man/process.custom.config.matrix.Rd | 2 +- vignettes/vignette.Rmd | 6 +++--- 9 files changed, 31 insertions(+), 28 deletions(-)
Title: Estimating and Mapping Disaggregated Indicators
Description: Functions that support estimating, assessing and mapping regional
disaggregated indicators. So far, estimation methods comprise direct estimation
and the model-based approach Empirical Best Prediction (see "Small area
estimation of poverty indicators" by Molina and Rao (2010) <doi:10.1002/cjs.10051>),
as well as their precision estimates. The assessment of the used model
is supported by a summary and diagnostic plots. For a suitable presentation of
estimates, map plots can be easily created. Furthermore, results can easily be
exported to excel.
Author: Ann-Kristin Kreutzmann [aut],
Soeren Pannier [aut, cre],
Natalia Rojas-Perilla [aut],
Timo Schmid [aut],
Matthias Templ [aut],
Nikos Tzavidis [aut]
Maintainer: Soeren Pannier <soeren.pannier@fu-berlin.de>
Diff between emdi versions 1.1.1 dated 2017-07-08 and 1.1.2 dated 2018-04-04
emdi-1.1.1/emdi/data/eusilcA_pop.RData |only emdi-1.1.1/emdi/data/eusilcA_smp.RData |only emdi-1.1.1/emdi/inst/shapes/shape_austria_dis.RData |only emdi-1.1.1/emdi/tests/testthat/Xoutsamp_AuxVar.RData |only emdi-1.1.1/emdi/tests/testthat/arpr_all.csv |only emdi-1.1.1/emdi/tests/testthat/arpr_all_cali.csv |only emdi-1.1.1/emdi/tests/testthat/arpr_all_naive.csv |only emdi-1.1.1/emdi/tests/testthat/data_bc.csv |only emdi-1.1.1/emdi/tests/testthat/data_bc_std.csv |only emdi-1.1.1/emdi/tests/testthat/data_log.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_MSE_bc.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_MSE_bc_out.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_MSE_log.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_MSE_no.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_optpar_bc.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_optpar_bc_out.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_point_bc.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_point_bc_out.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_point_log.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_point_no.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_shift_bc.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_shift_bc_out.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_shift_log.csv |only emdi-1.1.1/emdi/tests/testthat/ebp_test.csv |only emdi-1.1.1/emdi/tests/testthat/eusilc.RData |only emdi-1.1.1/emdi/tests/testthat/eusilc.csv |only emdi-1.1.1/emdi/tests/testthat/gini_all.csv |only emdi-1.1.1/emdi/tests/testthat/gini_all_cali.csv |only emdi-1.1.1/emdi/tests/testthat/gini_all_naive.csv |only emdi-1.1.1/emdi/tests/testthat/incomedata.RData |only emdi-1.1.1/emdi/tests/testthat/incomedata_woTeruel.RData |only emdi-1.1.1/emdi/tests/testthat/qsr_all.csv |only emdi-1.1.1/emdi/tests/testthat/qsr_all_cali.csv |only emdi-1.1.1/emdi/tests/testthat/qsr_all_naive.csv |only emdi-1.1.1/emdi/tests/testthat/test_ebp.R |only emdi-1.1.1/emdi/tests/testthat/test_mse_estimation.R |only emdi-1.1.2/emdi/DESCRIPTION | 18 - emdi-1.1.2/emdi/MD5 | 172 ++++------ emdi-1.1.2/emdi/NAMESPACE | 65 +++ emdi-1.1.2/emdi/NEWS.md | 10 emdi-1.1.2/emdi/R/check_compare_arguments.R |only emdi-1.1.2/emdi/R/check_direct_arguments.R | 14 emdi-1.1.2/emdi/R/check_ebp_arguments.R | 35 +- emdi-1.1.2/emdi/R/check_plot_arguments.R | 2 emdi-1.1.2/emdi/R/check_writeexcel_arguments.R | 17 + emdi-1.1.2/emdi/R/compare.R |only emdi-1.1.2/emdi/R/direct_estimation.R | 71 ++-- emdi-1.1.2/emdi/R/direct_variance.R | 51 +-- emdi-1.1.2/emdi/R/ebp.R | 60 ++- emdi-1.1.2/emdi/R/emdi.R | 4 emdi-1.1.2/emdi/R/emdiObject.R | 21 - emdi-1.1.2/emdi/R/estimators.emdi.R | 39 +- emdi-1.1.2/emdi/R/eusilcA_pop.R | 10 emdi-1.1.2/emdi/R/eusilcA_smp.R | 8 emdi-1.1.2/emdi/R/framework_direct.R | 20 - emdi-1.1.2/emdi/R/framework_ebp.R | 29 - emdi-1.1.2/emdi/R/load_shape.R | 5 emdi-1.1.2/emdi/R/map_plot.R | 237 ++++++-------- emdi-1.1.2/emdi/R/mse_emdi.R | 8 emdi-1.1.2/emdi/R/mse_estimation.R | 84 ++-- emdi-1.1.2/emdi/R/optimal_parameter.R | 11 emdi-1.1.2/emdi/R/plot.emdi.R | 177 +++++----- emdi-1.1.2/emdi/R/point_emdi.R | 83 ++-- emdi-1.1.2/emdi/R/point_estimation.R | 15 emdi-1.1.2/emdi/R/point_estimation_direct.R | 2 emdi-1.1.2/emdi/R/summary.emdi.R | 14 emdi-1.1.2/emdi/R/transformation_functions.R | 10 emdi-1.1.2/emdi/R/write.excel.emdi.R | 57 ++- emdi-1.1.2/emdi/R/write.ods.emdi.R |only emdi-1.1.2/emdi/build/vignette.rds |binary emdi-1.1.2/emdi/data/eusilcA_pop.rda |binary emdi-1.1.2/emdi/data/eusilcA_smp.rda |binary emdi-1.1.2/emdi/inst/CITATION |only emdi-1.1.2/emdi/inst/COPYRIGHTS |only emdi-1.1.2/emdi/inst/doc/vignette_emdi.pdf |binary emdi-1.1.2/emdi/inst/shapes/shape_austria_dis.rda |only emdi-1.1.2/emdi/man/compare_plot.Rd |only emdi-1.1.2/emdi/man/data_transformation.Rd | 4 emdi-1.1.2/emdi/man/direct.Rd | 26 - emdi-1.1.2/emdi/man/ebp.Rd | 45 +- emdi-1.1.2/emdi/man/emdi.Rd | 4 emdi-1.1.2/emdi/man/emdiObject.Rd | 21 - emdi-1.1.2/emdi/man/estimators.Rd | 22 + emdi-1.1.2/emdi/man/estimators.emdi.Rd | 10 emdi-1.1.2/emdi/man/eusilcA_pop.Rd | 10 emdi-1.1.2/emdi/man/eusilcA_smp.Rd | 8 emdi-1.1.2/emdi/man/head.estimators.emdi.Rd | 4 emdi-1.1.2/emdi/man/load_shapeaustria.Rd | 2 emdi-1.1.2/emdi/man/map_plot.Rd | 120 +++---- emdi-1.1.2/emdi/man/plot.emdi.Rd | 32 + emdi-1.1.2/emdi/man/print.summary.emdi.Rd | 2 emdi-1.1.2/emdi/man/subset.estimators.emdi.Rd | 2 emdi-1.1.2/emdi/man/summary.emdi.Rd | 12 emdi-1.1.2/emdi/man/tail.estimators.emdi.Rd | 4 emdi-1.1.2/emdi/man/write.excel.Rd | 51 +-- emdi-1.1.2/emdi/tests/testthat/Direct |only emdi-1.1.2/emdi/tests/testthat/EBP |only emdi-1.1.2/emdi/tests/testthat/test_data_transformation.R | 14 emdi-1.1.2/emdi/tests/testthat/test_direct_estimation.R | 22 - emdi-1.1.2/emdi/tests/testthat/test_optimal_par.R | 8 emdi-1.1.2/emdi/tests/testthat/test_point_estimation.R | 12 101 files changed, 995 insertions(+), 789 deletions(-)
Title: Constrained Optimal Sample Allocation
Description: Implements generalized constrained optimal sample allocation framework for two-group multilevel regression discontinuity studies and multilevel randomized trials with continuous outcomes. Bulus, M. (2017). Design Considerations in Three-level Regression Discontinuity Studies (Doctoral dissertation). University of Missouri, Columbia, MO.
Author: Metin Bulus [aut, cre, cph]
Maintainer: Metin Bulus <bulusmetin@gmail.com>
Diff between cosa versions 1.1.0 dated 2018-03-01 and 1.2.0 dated 2018-04-04
DESCRIPTION | 10 +- MD5 | 72 +++++++------- NEWS.md | 7 + R/bcrd3f2.R | 47 ++++++++- R/bcrd3r2.R | 46 ++++++++- R/bcrd4f3.R | 62 +++++++++++- R/bcrd4r2.R | 56 ++++++++++- R/bcrd4r3.R | 58 ++++++++++- R/bird2f1.R | 40 +++++++- R/bird2r1.R | 38 ++++++- R/bird3r1.R | 45 ++++++++- R/bird4r1.R | 54 ++++++++++ R/cosa.R | 2 R/crd2r2.R | 38 ++++++- R/crd3r3.R | 48 ++++++++- R/crd4r4.R | 61 +++++++++++- R/ird1r1.R | 30 +++++- R/utils.R | 219 +++++++++++++++++++++++++++++++++----------- R/zzz.R | 4 README.md | 13 +- inst/CITATION | 15 +-- inst/doc/cosa_tutorial.R | 77 ++++++++++++--- inst/doc/cosa_tutorial.Rmd | 103 +++++++++++++++----- inst/doc/cosa_tutorial.html | 135 +++++++++++++++++++++------ man/bcrd3r2.Rd | 6 - man/bcrd4r2.Rd | 6 - man/bcrd4r3.Rd | 6 - man/bird2r1.Rd | 6 - man/bird3r1.Rd | 6 - man/bird4r1.Rd | 6 - man/cosa-package.Rd | 12 +- man/crd2r2.Rd | 11 +- man/crd3r3.Rd | 11 +- man/crd4r4.Rd | 6 - man/ird1r1.Rd | 11 +- man/plot.Rd | 2 vignettes/cosa_tutorial.Rmd | 103 +++++++++++++++----- 37 files changed, 1183 insertions(+), 289 deletions(-)
Title: Analysis of Simulation Studies Including Monte Carlo Error
Description: Summarise results from simulation studies and compute Monte Carlo
standard errors of commonly used summary statistics. This package is modelled
on the 'simsum' user-written command in 'Stata' (See White I.R., 2010
<http://www.stata-journal.com/article.html?article=st0200>).
Author: Alessandro Gasparini [aut, cre]
(<https://orcid.org/0000-0002-8319-7624>),
Ian R. White [aut]
Maintainer: Alessandro Gasparini <ag475@leicester.ac.uk>
Diff between rsimsum versions 0.3.0 dated 2018-02-22 and 0.3.1 dated 2018-04-04
DESCRIPTION | 26 MD5 | 272 +-- NAMESPACE | 88 - R/bar.R | 26 R/bar.multisimsum.R | 235 +-- R/bar.simsum.R | 189 +- R/data.R | 90 - R/dropbig.R | 20 R/dropbig.multisimsum.R | 52 R/dropbig.simsum.R | 56 R/forest.R | 26 R/forest.multisimsum.R | 231 +-- R/forest.simsum.R | 195 +- R/format.multisimsum.R | 96 - R/format.simsum.R | 92 - R/get_data.R | 18 R/get_data.miss.R | 32 R/get_data.multisimsum.R | 96 - R/get_data.simsum.R | 102 - R/get_data.summary.multisimsum.R | 100 - R/get_data.summary.simsum.R | 104 - R/heat.R | 26 R/heat.multisimsum.R | 168 +- R/heat.simsum.R | 243 +-- R/is.multisimsum.R | 14 R/is.simsum.R | 14 R/lolly.R | 26 R/lolly.multisimsum.R | 239 +-- R/lolly.simsum.R | 205 +- R/miss.R | 254 +-- R/multisimsum.R | 359 ++-- R/nsim.R | 82 - R/pattern.R | 22 R/pattern.multisimsum.R | 154 +- R/pattern.simsum.R | 124 - R/perfms.R | 272 +-- R/print.dropbig.multisimsum.R | 48 R/print.dropbig.simsum.R | 48 R/print.miss.R | 144 - R/print.multisimsum.R | 92 - R/print.simsum.R | 80 - R/print.summary.multisimsum.R | 264 +-- R/print.summary.simsum.R | 248 +-- R/rsimsum.R | 20 R/simsum.R | 709 ++++----- R/summary.multisimsum.R | 80 - R/summary.simsum.R | 82 - R/zip.R | 22 R/zip.multisimsum.R | 156 +- R/zip.simsum.R | 324 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/introduction.R | 166 +- inst/doc/introduction.Rmd | 624 ++++---- inst/doc/introduction.html | 2272 +++++++++++++----------------- inst/doc/plotting.R | 250 +-- inst/doc/plotting.Rmd | 560 +++---- inst/doc/plotting.html | 1902 +++++++++++-------------- inst/doc/relhaz.R | 444 ++--- inst/doc/relhaz.Rmd | 660 ++++---- inst/doc/relhaz.html | 1398 +++++++----------- inst/doc/rsimsumtidyverse.R | 69 inst/doc/rsimsumtidyverse.Rmd | 105 - inst/doc/rsimsumtidyverse.html | 1157 ++++++--------- man/MIsim.Rd | 58 man/bar.Rd | 44 man/bar.multisimsum.Rd | 104 - man/bar.simsum.Rd | 98 - man/dropbig.Rd | 32 man/dropbig.multisimsum.Rd | 58 man/dropbig.simsum.Rd | 60 man/forest.Rd | 44 man/forest.multisimsum.Rd | 100 - man/forest.simsum.Rd | 94 - man/format.multisimsum.Rd | 44 man/format.simsum.Rd | 44 man/format.summary.multisimsum.Rd | 50 man/format.summary.simsum.Rd | 44 man/frailty.Rd | 50 man/get_data.Rd | 32 man/get_data.miss.Rd | 56 man/get_data.multisimsum.Rd | 96 - man/get_data.simsum.Rd | 100 - man/get_data.summary.multisimsum.Rd | 98 - man/get_data.summary.simsum.Rd | 102 - man/heat.Rd | 44 man/heat.multisimsum.Rd | 120 - man/heat.simsum.Rd | 104 - man/is.multisimsum.Rd | 28 man/is.simsum.Rd | 28 man/lolly.Rd | 44 man/lolly.multisimsum.Rd | 106 - man/lolly.simsum.Rd | 100 - man/miss.Rd | 66 man/multisimsum.Rd | 130 - man/nsim.Rd | 76 - man/pattern.Rd | 44 man/pattern.multisimsum.Rd | 82 - man/pattern.simsum.Rd | 80 - man/print.dropbig.multisimsum.Rd | 38 man/print.dropbig.simsum.Rd | 38 man/print.miss.Rd | 52 man/print.multisimsum.Rd | 46 man/print.simsum.Rd | 44 man/print.summary.multisimsum.Rd | 96 - man/print.summary.simsum.Rd | 100 - man/relhaz.Rd | 62 man/rsimsum.Rd | 16 man/simsum.Rd | 134 - man/summary.multisimsum.Rd | 70 man/summary.simsum.Rd | 68 man/zip.Rd | 44 man/zip.multisimsum.Rd | 86 - man/zip.simsum.Rd | 88 - tests/testthat.R | 8 tests/testthat/test-bar.R | 324 ++-- tests/testthat/test-data.R | 32 tests/testthat/test-dropbig.R | 100 - tests/testthat/test-forest.R | 316 ++-- tests/testthat/test-format.R | 190 +- tests/testthat/test-get_data.R | 186 +- tests/testthat/test-heat.R | 202 +- tests/testthat/test-is.multisimsum.R | 18 tests/testthat/test-is.simsum.R | 18 tests/testthat/test-lolly.R | 270 +-- tests/testthat/test-miss.R | 100 - tests/testthat/test-multisimsum.R | 303 ++-- tests/testthat/test-nsim.R | 108 - tests/testthat/test-pattern.R | 126 - tests/testthat/test-simsum.R | 302 +-- tests/testthat/test-summary.multisimsum.R | 92 - tests/testthat/test-summary.simsum.R | 90 - tests/testthat/test-zip.R | 126 - vignettes/introduction.Rmd | 624 ++++---- vignettes/plotting.Rmd | 560 +++---- vignettes/relhaz.Rmd | 660 ++++---- vignettes/rsimsumtidyverse.Rmd | 105 - 137 files changed, 11910 insertions(+), 12664 deletions(-)
Title: Analysis of Factorial Experiments
Description: Convenience functions for analyzing factorial
experiments using ANOVA or mixed models. aov_ez(),
aov_car(), and aov_4() allow specification of between,
within (i.e., repeated-measures), or mixed between-within
(i.e., split-plot) ANOVAs for data in long format (i.e.,
one observation per row), aggregating multiple observations
per individual and cell of the design. mixed() fits mixed
models using lme4::lmer() and computes p-values for all
fixed effects using either Kenward-Roger or Satterthwaite
approximation for degrees of freedom (LMM only), parametric
bootstrap (LMMs and GLMMs), or likelihood ratio tests (LMMs
and GLMMs). afex uses type 3 sums of squares as default
(imitating commercial statistical software).
Author: Henrik Singmann [aut, cre] (<https://orcid.org/0000-0002-4842-3657>),
Ben Bolker [aut],
Jake Westfall [aut],
Frederik Aust [aut] (<https://orcid.org/0000-0003-4900-788X>),
Søren Højsgaard [ctb],
John Fox [ctb],
Michael A. Lawrence [ctb],
Ulf Mertens [ctb],
Jonathon Love [ctb],
Russell Lenth [ctb],
Rune Haubo Bojesen Christensen [ctb]
Maintainer: Henrik Singmann <singmann+afex@gmail.com>
Diff between afex versions 0.19-1 dated 2018-01-08 and 0.20-2 dated 2018-04-04
afex-0.19-1/afex/tests/testthat/test-lsmeans-interface.R |only afex-0.20-2/afex/DESCRIPTION | 25 afex-0.20-2/afex/MD5 | 58 +- afex-0.20-2/afex/NAMESPACE | 2 afex-0.20-2/afex/NEWS | 54 + afex-0.20-2/afex/R/afex-package.R | 6 afex-0.20-2/afex/R/allFit.R | 8 afex-0.20-2/afex/R/aov_car.R | 94 ++- afex-0.20-2/afex/R/lmerTest_utils.R |only afex-0.20-2/afex/R/methods.afex_aov.R | 137 +++- afex-0.20-2/afex/R/mixed.R | 66 +- afex-0.20-2/afex/R/obk.long-data.R | 4 afex-0.20-2/afex/R/zzz.R | 4 afex-0.20-2/afex/build/vignette.rds |binary afex-0.20-2/afex/inst/doc/afex_anova_example.Rmd | 9 afex-0.20-2/afex/inst/doc/afex_anova_example.html | 73 +- afex-0.20-2/afex/inst/doc/afex_mixed_example.html | 16 afex-0.20-2/afex/inst/doc/introduction-mixed-models.pdf |only afex-0.20-2/afex/inst/doc/introduction-mixed-models.pdf.asis |only afex-0.20-2/afex/man/afex-package.Rd | 6 afex-0.20-2/afex/man/afex_aov-methods.Rd | 12 afex-0.20-2/afex/man/aov_car.Rd | 38 + afex-0.20-2/afex/man/mixed.Rd | 284 ++++++---- afex-0.20-2/afex/man/obk.long.Rd | 4 afex-0.20-2/afex/tests/testthat/m_machines_lmerTest-pre3.0.rda |only afex-0.20-2/afex/tests/testthat/test-aov_car-basic.R | 10 afex-0.20-2/afex/tests/testthat/test-aov_car-structural.R | 10 afex-0.20-2/afex/tests/testthat/test-emmeans-interface.R |only afex-0.20-2/afex/tests/testthat/test-lmerTest-support.R | 27 afex-0.20-2/afex/tests/testthat/test-mixed-bugs.R | 13 afex-0.20-2/afex/tests/testthat/test-mixed-effects.R |only afex-0.20-2/afex/tests/testthat/test-mixed-structure.R | 216 +++++-- afex-0.20-2/afex/vignettes/afex_anova_example.Rmd | 9 afex-0.20-2/afex/vignettes/introduction-mixed-models.pdf.asis |only 34 files changed, 843 insertions(+), 342 deletions(-)
Title: Estimating Systems of Simultaneous Equations
Description: Econometric estimation of simultaneous
systems of linear and nonlinear equations using Ordinary Least
Squares (OLS), Weighted Least Squares (WLS), Seemingly Unrelated
Regressions (SUR), Two-Stage Least Squares (2SLS), Weighted
Two-Stage Least Squares (W2SLS), and Three-Stage Least Squares (3SLS).
Author: Arne Henningsen and Jeff D. Hamann
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>
Diff between systemfit versions 1.1-20 dated 2017-03-12 and 1.1-22 dated 2018-04-04
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NEWS | 5 +++++ R/calcGLS.R | 4 ++-- build/vignette.rds |binary inst/doc/systemfit.pdf |binary 6 files changed, 18 insertions(+), 13 deletions(-)
Title: Correlation and Regression Analyses for Randomized Response Data
Description: Univariate and multivariate methods to analyze randomized response
(RR) survey designs (e.g., Warner, S. L. (1965). Randomized response: A
survey technique for eliminating evasive answer bias. Journal of the
American Statistical Association, 60, 63–69). <doi:10.2307/2283137>
Besides univariate estimates of true proportions, RR variables can be used
for correlations, as dependent variable in a logistic regression (with or
without random effects), as predictors in a linear regression, or as
dependent variable in a beta-binomial ANOVA. For simulation and bootstrap
purposes, RR data can be generated according to several models.
Author: Daniel W. Heck [aut, cre],
Morten Moshagen [aut]
Maintainer: Daniel W. Heck <heck@uni-mannheim.de>
Diff between RRreg versions 0.6.6 dated 2018-03-29 and 0.6.7 dated 2018-04-04
DESCRIPTION | 8 +-- MD5 | 24 +++++----- R/RRcor.R | 38 +++++++++------- R/RRlin.R | 32 ++++++------- R/RRlog.R | 5 -- R/RRsimu.R | 46 +++++++++---------- R/RRuni.R | 5 -- R/powerplot.R | 10 +++- inst/doc/RRreg.html | 120 ++++++++++++++++++++++++++-------------------------- man/RRcor.Rd | 2 man/RRlin.Rd | 2 man/RRsimu.Rd | 2 man/powerplot.Rd | 2 13 files changed, 153 insertions(+), 143 deletions(-)
Title: Add Marginal Histograms to 'ggplot2', and More 'ggplot2'
Enhancements
Description: Collection of functions and layers to enhance 'ggplot2'. The
flagship function is 'ggMarginal()', which can be used to add marginal
histograms/boxplots/density plots to 'ggplot2' scatterplots.
Author: Dean Attali [aut, cre],
Christopher Baker [aut]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ggExtra versions 0.7 dated 2017-06-24 and 0.8 dated 2018-04-04
ggExtra-0.7/ggExtra/R/ggMarginalHelpers.R |only ggExtra-0.7/ggExtra/tests |only ggExtra-0.8/ggExtra/DESCRIPTION | 20 ggExtra-0.8/ggExtra/MD5 | 92 -- ggExtra-0.8/ggExtra/NEWS.md | 13 ggExtra-0.8/ggExtra/R/ggMarginal-helpers-genFinalMargPlot.R |only ggExtra-0.8/ggExtra/R/ggMarginal-helpers-misc.R |only ggExtra-0.8/ggExtra/R/ggMarginal.R | 164 ++- ggExtra-0.8/ggExtra/R/ggMarginalGadget.R | 165 ++- ggExtra-0.8/ggExtra/R/plotCount.R | 36 ggExtra-0.8/ggExtra/R/removeGrid.R | 6 ggExtra-0.8/ggExtra/R/runExample.R | 7 ggExtra-0.8/ggExtra/README.md | 74 + ggExtra-0.8/ggExtra/build/vignette.rds |binary ggExtra-0.8/ggExtra/inst/doc/ggExtra.R | 16 ggExtra-0.8/ggExtra/inst/doc/ggExtra.Rmd | 50 - ggExtra-0.8/ggExtra/inst/doc/ggExtra.html | 414 +++++++--- ggExtra-0.8/ggExtra/inst/examples/ggMarginal/global.R |only ggExtra-0.8/ggExtra/inst/examples/ggMarginal/server.R | 151 ++- ggExtra-0.8/ggExtra/inst/examples/ggMarginal/ui.R | 39 ggExtra-0.8/ggExtra/inst/vignette_files/ggExtra_files/figure-markdown_strict/ggmarginal-basic-1.png |binary ggExtra-0.8/ggExtra/inst/vignette_files/ggExtra_files/figure-markdown_strict/ggmarginal-extraparams-1.png |binary ggExtra-0.8/ggExtra/inst/vignette_files/ggExtra_files/figure-markdown_strict/ggmarginal-grouping-1.png |only ggExtra-0.8/ggExtra/inst/vignette_files/ggExtra_files/figure-markdown_strict/ggmarginal-hist-1.png |binary ggExtra-0.8/ggExtra/inst/vignette_files/ggExtra_files/figure-markdown_strict/ggmarginal-large-1.png |binary ggExtra-0.8/ggExtra/inst/vignette_files/ggExtra_files/figure-markdown_strict/ggmarginal-manual-1.png |binary ggExtra-0.8/ggExtra/inst/vignette_files/ggExtra_files/figure-markdown_strict/ggmarginal-save-1.png |binary ggExtra-0.8/ggExtra/man/ggMarginal.Rd | 52 - ggExtra-0.8/ggExtra/man/ggMarginalGadget.Rd | 4 ggExtra-0.8/ggExtra/man/print.ggExtraPlot.Rd | 2 ggExtra-0.8/ggExtra/vignettes/ggExtra.Rmd | 50 - 31 files changed, 835 insertions(+), 520 deletions(-)
Title: Effect Stars
Description: Provides functions for the method of effect stars as proposed by Tutz and Schauberger (2013) <doi:10.1080/10618600.2012.701379>. Effect stars can be used to visualize estimates of parameters corresponding to different groups, for example in multinomial logit models. Beside the main function 'effectstars' there exist methods for special objects, for example for 'vglm' objects from the 'VGAM' package.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther@stat.uni-muenchen.de>
Diff between EffectStars2 versions 0.1-1 dated 2016-09-01 and 0.1-2 dated 2018-04-04
DESCRIPTION | 12 ++++++------ MD5 | 34 +++++++++++++++++----------------- R/EffectStars2-package.R | 10 ++++++---- R/data_docu.R | 39 ++++++++++++++++++++++++++++++++------- R/effect.stars.DIFboost.R | 4 +++- R/effect.stars.DIFlasso.R | 4 +++- R/effect.stars.R | 6 ++++-- R/effect.stars.vglm.R | 5 ++++- R/star.ctrl.R | 11 +++++++---- man/EffectStars2-package.Rd | 17 +++++++++-------- man/effectstars.DIFboost.Rd | 13 +++++++------ man/effectstars.DIFlasso.Rd | 13 +++++++------ man/effectstars.default.Rd | 17 +++++++++-------- man/effectstars.vglm.Rd | 14 ++++++++------ man/election.Rd | 11 +++++++---- man/insolvency.Rd | 22 ++++++++++++++++++++-- man/plebiscite.Rd | 9 +++++---- man/star.ctrl.Rd | 20 +++++++++++--------- 18 files changed, 165 insertions(+), 96 deletions(-)
Title: Visualization of Categorical Response Models
Description: Notice: The package EffectStars2 provides a more up-to-date implementation of effect stars! EffectStars provides functions to visualize regression models with categorical response as proposed by Tutz and Schauberger (2013) <doi:10.1080/10618600.2012.701379>. The effects of the variables are plotted with star plots in order to allow for an optical impression of the fitted model.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther.schauberger@stat.uni-muenchen.de>
Diff between EffectStars versions 1.8 dated 2017-10-09 and 1.9 dated 2018-04-04
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- man/plebiscite.Rd | 2 +- man/womenlabour.Rd | 2 +- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Analyses of Phylogenetic Treeshape
Description: Simulation and analysis
of phylogenetic tree topologies using statistical indices. It
is a companion library of the 'ape' package. It provides
additional functions for reading, plotting, manipulating
phylogenetic trees. It also offers convenient web-access to
public databases, and enables testing null models of
macroevolution using corrected test statistics. Trees of class
"phylo" (from 'ape' package) can be converted easily.
Implements methods described in Bortolussi et al. (2005)
<doi:10.1093/bioinformatics/bti798> and Maliet et al. (2017)
<doi:10.1101/224295>.
Author: Nicolas Bortolussi, Michael Blum, Eric Durand, Olivier Francois, Odile Maliet
Maintainer: Michael Blum <michael.blum@univ-grenoble-alpes.fr>
Diff between apTreeshape versions 1.4-5 dated 2012-11-08 and 1.5-0 dated 2018-04-04
apTreeshape-1.4-5/apTreeshape/R/read.tree2.R |only apTreeshape-1.5-0/apTreeshape/CHANGES | 135 +++++---- apTreeshape-1.5-0/apTreeshape/DESCRIPTION | 26 - apTreeshape-1.5-0/apTreeshape/MD5 | 75 ++++- apTreeshape-1.5-0/apTreeshape/NAMESPACE | 68 ++++ apTreeshape-1.5-0/apTreeshape/R/aldous.test.R | 1 apTreeshape-1.5-0/apTreeshape/R/get_PD_sample.R |only apTreeshape-1.5-0/apTreeshape/R/get_tree_beta.R |only apTreeshape-1.5-0/apTreeshape/R/mcmc_alpha.R |only apTreeshape-1.5-0/apTreeshape/R/mcmc_eta.R |only apTreeshape-1.5-0/apTreeshape/R/simulate_kingman.R |only apTreeshape-1.5-0/apTreeshape/R/simulate_tree.R |only apTreeshape-1.5-0/apTreeshape/R/simulate_yule.R |only apTreeshape-1.5-0/apTreeshape/README.md |only apTreeshape-1.5-0/apTreeshape/man/a_N.Rd |only apTreeshape-1.5-0/apTreeshape/man/apTreeshape-internal.Rd | 57 ++-- apTreeshape-1.5-0/apTreeshape/man/aux_lik.Rd |only apTreeshape-1.5-0/apTreeshape/man/bind.trees.Rd |only apTreeshape-1.5-0/apTreeshape/man/build_tree.Rd |only apTreeshape-1.5-0/apTreeshape/man/change_int.Rd |only apTreeshape-1.5-0/apTreeshape/man/change_int_eta.Rd |only apTreeshape-1.5-0/apTreeshape/man/cladesize.Rd | 88 +++--- apTreeshape-1.5-0/apTreeshape/man/colless.Rd | 4 apTreeshape-1.5-0/apTreeshape/man/cutreeshape.Rd | 2 apTreeshape-1.5-0/apTreeshape/man/depth.Rd |only apTreeshape-1.5-0/apTreeshape/man/enhance.Rd |only apTreeshape-1.5-0/apTreeshape/man/enhance_eta.Rd |only apTreeshape-1.5-0/apTreeshape/man/get_PD_sample.Rd |only apTreeshape-1.5-0/apTreeshape/man/get_extinction_list.Rd |only apTreeshape-1.5-0/apTreeshape/man/get_tree_beta.Rd |only apTreeshape-1.5-0/apTreeshape/man/insert.Rd |only apTreeshape-1.5-0/apTreeshape/man/lambda.epsilon.Rd |only apTreeshape-1.5-0/apTreeshape/man/lambda_N.Rd |only apTreeshape-1.5-0/apTreeshape/man/likelihood.test.Rd | 128 ++++----- apTreeshape-1.5-0/apTreeshape/man/maxlik.betasplit.Rd | 3 apTreeshape-1.5-0/apTreeshape/man/mcmc_alpha.Rd |only apTreeshape-1.5-0/apTreeshape/man/mcmc_eta.Rd |only apTreeshape-1.5-0/apTreeshape/man/nodes_depths_ordonnes.Rd |only apTreeshape-1.5-0/apTreeshape/man/rbactrian.Rd |only apTreeshape-1.5-0/apTreeshape/man/rtreeshape.Rd | 179 ++++++------- apTreeshape-1.5-0/apTreeshape/man/sackin.Rd | 2 apTreeshape-1.5-0/apTreeshape/man/shape.statistic.Rd | 124 ++++----- apTreeshape-1.5-0/apTreeshape/man/shift.test.Rd | 117 ++++---- apTreeshape-1.5-0/apTreeshape/man/simulate.R.K.Rd |only apTreeshape-1.5-0/apTreeshape/man/simulate.R.Rd |only apTreeshape-1.5-0/apTreeshape/man/simulate.Tau.X.Rd |only apTreeshape-1.5-0/apTreeshape/man/simulate.Yi.Rd |only apTreeshape-1.5-0/apTreeshape/man/simulate_kingman.Rd |only apTreeshape-1.5-0/apTreeshape/man/simulate_tree.Rd |only apTreeshape-1.5-0/apTreeshape/man/simulate_yule.Rd |only apTreeshape-1.5-0/apTreeshape/man/split.Rd |only apTreeshape-1.5-0/apTreeshape/man/subtree.test.Rd | 2 apTreeshape-1.5-0/apTreeshape/man/summary.treeshape.Rd | 2 apTreeshape-1.5-0/apTreeshape/man/tipsubtree.Rd | 2 apTreeshape-1.5-0/apTreeshape/man/transform.Rd |only apTreeshape-1.5-0/apTreeshape/man/transform_eta.Rd |only apTreeshape-1.5-0/apTreeshape/man/treeshape.Rd | 2 apTreeshape-1.5-0/apTreeshape/man/yule_lengths.Rd |only 58 files changed, 563 insertions(+), 454 deletions(-)
Title: Convert a Matrix of Raw Values into Nice and Tidy Data
Description: Functions to help dealing with raw data from measurements, like
reading and transforming raw values organized in matrices, calculating and
converting concentrations and calculating precision of duplicates /
triplicates / ... . It is compatible with and building on top of some
'tidyverse'-packages.
Author: Eike Christian Kühn [aut, cre]
Maintainer: Eike Christian Kühn <eike.kuehn@pixelwoelkchen.de>
Diff between bioset versions 0.2.0 dated 2017-11-03 and 0.2.1 dated 2018-04-04
DESCRIPTION | 16 ++++++++-------- MD5 | 26 +++++++++++++------------- NEWS.md | 5 +++++ R/calc.R | 4 ++-- R/models.R | 4 ++-- R/sets.R | 2 +- inst/doc/introduction.html | 12 ++++++------ man/calc_factor_conc.Rd | 2 +- man/calc_factor_prefix.Rd | 2 +- man/convert_conc.Rd | 2 +- man/convert_prefix.Rd | 2 +- man/models_linear.Rd | 2 +- man/models_lnln.Rd | 2 +- man/sets_read.Rd | 2 +- 14 files changed, 44 insertions(+), 39 deletions(-)
Title: Testing Linear Regression Models
Description: A collection of tests, data sets, and examples
for diagnostic checking in linear regression models. Furthermore,
some generic tools for inference in parametric models are provided.
Author: Torsten Hothorn [aut] (<https://orcid.org/0000-0001-8301-0471>),
Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Richard W. Farebrother [aut] (pan.f),
Clint Cummins [aut] (pan.f),
Giovanni Millo [ctb],
David Mitchell [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between lmtest versions 0.9-35 dated 2017-02-11 and 0.9-36 dated 2018-04-04
DESCRIPTION | 18 +++--- MD5 | 59 ++++++++++--------- NEWS | 11 +++ R/resettest.R | 40 ++++++++----- build/vignette.rds |binary data/ChickEgg.rda |binary data/Mandible.rda |binary data/USDistLag.rda |binary data/bondyield.rda |binary data/currencysubstitution.rda |binary data/ftemp.rda |binary data/fyff.rda |binary data/gmdc.rda |binary data/growthofmoney.rda |binary data/ip.rda |binary data/jocci.rda |binary data/lhur.rda |binary data/moneydemand.rda |binary data/pw561.rda |binary data/unemployment.rda |binary data/valueofstocks.rda |binary data/wages.rda |binary inst/doc/lmtest-intro.pdf |binary man/ftemp.Rd | 4 - man/moneydemand.Rd | 2 man/raintest.Rd | 4 - man/resettest.Rd | 11 ++- man/waldtest.Rd | 2 src/init.c |only tests/Examples/lmtest-Ex.Rout.save | 111 +++++++++++++++++++------------------ vignettes/lmtest.bib | 13 ++-- 31 files changed, 151 insertions(+), 124 deletions(-)
Title: Create Values for Human Consumption
Description: An almost direct port of the 'python' 'humanize' package <https://github.com/jmoiron/humanize>.
This package contains utilities to convert values into human readable forms.
Author: Gerry Manoim [aut, cre]
Maintainer: Gerry Manoim <gerrymanoim@gmail.com>
Diff between humanize versions 0.1.0 dated 2018-03-15 and 0.2.0 dated 2018-04-04
DESCRIPTION | 9 ++- MD5 | 27 +++++---- NAMESPACE | 5 + NEWS.md | 6 ++ R/assertions.R | 3 + R/number.R | 117 +++++++++++++++++++++++++++++++++++++++++ R/time.R | 8 +- README.md | 55 ++++++++++++++++++- man/count_as_ap.Rd |only man/count_as_ordinal.Rd |only man/count_as_word.Rd |only man/natural_day.Rd | 6 +- man/number_as_comma.Rd |only man/reexports.Rd | 4 + tests/testthat/test_filesize.R | 1 tests/testthat/test_number.R |only tests/testthat/test_time.R | 2 17 files changed, 217 insertions(+), 26 deletions(-)
Title: Animal Social Network Inference and Permutations for Ecologists
Description: Implements several tools that are used in animal social network analysis. In particular, this package provides the tools to infer groups and generate networks from observation data, perform permutation tests on the data, calculate lagged association rates, and performed multiple regression analysis on social network data.
Author: Damien R. Farine <dfarine@orn.mpg.de>
Maintainer: Damien R. Farine <dfarine@orn.mpg.de>
Diff between asnipe versions 1.1.8 dated 2018-01-26 and 1.1.9 dated 2018-04-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/gmmevents.R | 9 +++++---- man/asnipe-package.Rd | 4 ++-- 4 files changed, 14 insertions(+), 13 deletions(-)