Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing,
manipulating and analyzing transaction data and patterns (frequent
itemsets and association rules). Also provides
C implementations of the association mining algorithms Apriori and Eclat.
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph],
Ian Johnson [ctb, cph],
Christian Borgelt [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.6-0 dated 2018-03-06 and 1.6-1 dated 2018-04-06
arules-1.6-0/arules/tests/testthat/test-measures.R |only arules-1.6-1/arules/DESCRIPTION | 9 arules-1.6-1/arules/MD5 | 56 arules-1.6-1/arules/NEWS.md | 10 arules-1.6-1/arules/R/discretize.R | 3 arules-1.6-1/arules/R/interestMeasures.R | 8 arules-1.6-1/arules/R/itemsets.R | 3 arules-1.6-1/arules/R/rules.R | 3 arules-1.6-1/arules/build/vignette.rds |binary arules-1.6-1/arules/data/Adult.rda |binary arules-1.6-1/arules/data/AdultUCI.rda |binary arules-1.6-1/arules/data/Epub.rda |binary arules-1.6-1/arules/data/Groceries.rda |binary arules-1.6-1/arules/data/Income.rda |binary arules-1.6-1/arules/data/IncomeESL.rda |binary arules-1.6-1/arules/data/Mushroom.rda |binary arules-1.6-1/arules/data/SunBai.rda |binary arules-1.6-1/arules/inst/doc/arules.pdf |binary arules-1.6-1/arules/man/aggregate.Rd | 18 arules-1.6-1/arules/man/discretize.Rd | 12 arules-1.6-1/arules/man/interestMeasure.Rd | 8 arules-1.6-1/arules/man/itemsets-class.Rd | 4 arules-1.6-1/arules/man/rules-class.Rd | 27 arules-1.6-1/arules/src/matrix.c | 1229 ++++---- arules-1.6-1/arules/src/ptree.c | 1670 +++++------ arules-1.6-1/arules/src/rapriori.c | 1857 ++++++------- arules-1.6-1/arules/src/similarity.c | 391 +- arules-1.6-1/arules/src/warm.c | 1242 ++++---- arules-1.6-1/arules/tests/testthat/test-discretize.R | 8 arules-1.6-1/arules/tests/testthat/test-interestMeasures.R |only 30 files changed, 3317 insertions(+), 3241 deletions(-)
Title: Hierarchical Bayesian Analysis of Recognition Memory
Description: Contains functions for fitting hierarchical versions of
EVSD, UVSD, DPSD, DPSD with d' restricted to be positive, and
our gamma signal detection model to recognition memory
confidence-ratings data.
Author: Michael S. Pratte
Maintainer: Mike Pratte <prattems@gmail.com>
Diff between hbmem versions 0.3 dated 2012-12-20 and 0.3-3 dated 2018-04-06
hbmem-0.3-3/hbmem/DESCRIPTION | 13 +++--- hbmem-0.3-3/hbmem/MD5 | 54 +++++++++++++------------- hbmem-0.3-3/hbmem/NAMESPACE | 5 +- hbmem-0.3-3/hbmem/R/dpsdPos.R | 2 hbmem-0.3-3/hbmem/data/datalist |only hbmem-0.3-3/hbmem/data/prm09.txt.gz |only hbmem-0.3-3/hbmem/data/sd10.txt.gz |only hbmem-0.3-3/hbmem/data/sd13.txt.gz |only hbmem-0.3-3/hbmem/data/sd2.txt.gz |only hbmem-0.3-3/hbmem/data/sd6.txt.gz |only hbmem-0.3-3/hbmem/man/cond.rest.betaD.Rd | 3 - hbmem-0.3-3/hbmem/man/cond.thetaD.Rd | 3 - hbmem-0.3-3/hbmem/man/dpsdFullSim.Rd | 5 +- hbmem-0.3-3/hbmem/man/dpsdPosLogLike.Rd | 3 - hbmem-0.3-3/hbmem/man/dpsdRNSim.Rd | 5 +- hbmem-0.3-3/hbmem/man/gammaLikeLogLike.Rd | 3 - hbmem-0.3-3/hbmem/man/gammaLikeSample.Rd | 3 - hbmem-0.3-3/hbmem/man/gammaLikeSim.Rd | 4 + hbmem-0.3-3/hbmem/man/gammaLogLike.Rd | 3 - hbmem-0.3-3/hbmem/man/hbmem-package.Rd | 6 +- hbmem-0.3-3/hbmem/man/sampleNorm2.Rd | 3 - hbmem-0.3-3/hbmem/man/sampleNormR.Rd | 16 ++++--- hbmem-0.3-3/hbmem/man/sampleNormb.Rd | 12 +++-- hbmem-0.3-3/hbmem/man/sampleSig2.Rd | 3 - hbmem-0.3-3/hbmem/man/sampleSig2b.Rd | 6 +- hbmem-0.3-3/hbmem/man/uvsdSim.Rd | 13 ++++-- hbmem-0.3-3/hbmem/src/gamma.c | 4 - hbmem-0.3-3/hbmem/src/normal.c | 10 ++-- hbmem-0.3-3/hbmem/src/registerDynamicSymbol.c |only hbmem-0.3/hbmem/data/prm09.txt |only hbmem-0.3/hbmem/data/sd10.txt |only hbmem-0.3/hbmem/data/sd13.txt |only hbmem-0.3/hbmem/data/sd2.txt |only hbmem-0.3/hbmem/data/sd6.txt |only 34 files changed, 108 insertions(+), 71 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for multiple random effects allowing the specification of variance-covariance structures for random effects and allowing the fit of heterogeneous variance models (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>). ML/REML estimates can be obtained using the Direct-Inversion Newton-Raphson, and Efficient Mixed Model Association algorithms. Designed for genomic prediction and genome wide association studies (GWAS), particularly focused in the p > n problem (more coefficients than observations) to include multiple relationship matrices or other covariance structures. Spatial models can be fitted using the two-dimensional spline functionality in sommer.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 3.3 dated 2018-03-05 and 3.4 dated 2018-04-06
DESCRIPTION | 10 ++++---- MD5 | 18 +++++++------- R/mmer.R | 55 +++++++++++++++++++++++--------------------- R/mmer2.R | 30 ++++++++++++++++++++---- inst/doc/sommer.start.Rmd | 2 - man/mmer.Rd | 3 +- man/mmer2.Rd | 32 ++++++++++++++++++------- vignettes/sommer.html | 22 ++++++++--------- vignettes/sommer.start.Rmd | 2 - vignettes/sommer.start.html | 22 ++++++++--------- 10 files changed, 118 insertions(+), 78 deletions(-)
Title: Searching for Optimal MDS Procedure for Metric and
Interval-Valued Symbolic Data
Description: Selecting the optimal multidimensional scaling (MDS) procedure for metric data via metric MDS (ratio, interval, mspline) and nonmetric MDS (ordinal). Selecting the optimal multidimensional scaling (MDS) procedure for interval-valued symbolic data via metric MDS (ratio, interval, mspline). Selecting the optimal MDS procedure for statistical data referring to the evaluation of tourist attractiveness of Lower Silesian counties.
(Borg, I., Groenen, P.J.F., Mair, P. (2013) <doi:10.1007/978-3-642-31848-1>,
De Leeuw, J., Mair, P. (2015) <doi:10.1002/9781118445112.stat06268.pub2>,
Groenen, P.J.F., Winsberg, S., Rodriguez, O., Diday, E. (2006) <doi:10.1016/j.csda.2006.04.003>,
Walesiak, M. (2016) <doi:10.15611/ekt.2016.2.01>,
Walesiak, M. (2017) <doi:10.15611/ekt.2017.3.01>).
Author: Marek Walesiak <marek.walesiak@ue.wroc.pl>, Andrzej Dudek <andrzej.dudek@ue.wroc.pl>
Maintainer: Andrzej Dudek <andrzej.dudek@ue.wroc.pl>
Diff between mdsOpt versions 0.2-2 dated 2017-12-11 and 0.3-1 dated 2018-04-06
DESCRIPTION | 17 +++++++++++------ MD5 | 22 ++++++++++++++++------ NAMESPACE | 10 ++++++++-- R/drawIsoquants.r |only R/findOptimalIscalInterval.r |only R/ispb.r |only R/optIscalInterval.r |only R/rotation2dAnimation.r |only man/drawIsoquants.rd |only man/findOptimalIscalInterval.rd |only man/findOptimalSmacofSym.rd | 18 +++++++++--------- man/ispb.rd |only man/optIscalInterval.rd |only man/optSmacofSymInterval.rd | 14 +++++++------- man/optSmacofSym_mMDS.rd | 18 +++++++++--------- man/optSmacofSym_nMDS.rd | 18 +++++++++--------- man/rotation2dAnimation.rd |only 17 files changed, 69 insertions(+), 48 deletions(-)
Title: Time Series Costationarity Determination
Description: Contains functions that can determine whether a time series
is second-order stationary or not (and hence evidence for
locally stationarity). Given two non-stationary series (i.e.
locally stationary series) this package can then discover
time-varying linear combinations that are second-order stationary.
Author: Guy Nason [aut, cre],
Alessandro Cardinali [aut, ctb]
Maintainer: Guy Nason <g.p.nason@bristol.ac.uk>
Diff between costat versions 2.3 dated 2013-10-14 and 2.4 dated 2018-04-06
DESCRIPTION | 18 +++++++++++------- MD5 | 6 +++--- NAMESPACE | 6 ++++++ inst/CHANGES | 4 ++++ 4 files changed, 24 insertions(+), 10 deletions(-)
Title: Multiscale Change-Point Inference
Description: Allows fitting of step-functions to univariate serial data where neither the number of jumps nor their positions is known by implementing the multiscale regression estimators SMUCE (K. Frick, A. Munk and H. Sieling, 2014) <doi:10.1111/rssb.12047> and HSMUCE (F. Pein, H. Sieling and A. Munk, 2017) <doi:10.1111/rssb.12202>. In addition, confidence intervals for the change-point locations and bands for the unknown signal can be obtained.
Author: Pein Florian [aut, cre],
Thomas Hotz [aut],
Hannes Sieling [aut],
Timo Aspelmeier [ctb]
Maintainer: Pein Florian <fpein@uni-goettingen.de>
Diff between stepR versions 2.0-1 dated 2017-05-19 and 2.0-2 dated 2018-04-06
ChangeLog | 38 +++++++++++++++------------ DESCRIPTION | 18 ++++++------ MD5 | 46 ++++++++++++++++----------------- R/RcppExports.R | 10 +++---- R/monteCarloSimulation.R | 2 - build/vignette.rds |binary inst/doc/StepR.Rnw | 50 +++++++++++++++++------------------- inst/doc/StepR.pdf |binary man/computeBounds.Rd | 6 ++-- man/computeStat.Rd | 4 +- man/critVal.Rd | 6 ++-- man/intervalSystem.Rd | 4 +- man/monteCarloSimulation.Rd | 4 +- man/parametricFamily.Rd | 8 ++--- man/penalty.Rd | 6 ++-- man/stepFit.Rd | 6 ++-- man/stepR-package.Rd | 10 +++---- src/RcppExports.cpp | 10 +++---- src/init.c | 23 +++++++++------- tests/testthat/test-computeBounds.R | 3 +- tests/testthat/test-critVal.R | 3 +- tests/testthat/test-stepFit.R | 3 +- vignettes/StepR.Rnw | 50 +++++++++++++++++------------------- vignettes/references.bib | 14 +++------- 24 files changed, 163 insertions(+), 161 deletions(-)
Title: Network-Based Genome Wide Association Studies
Description: A multi-core R package that contains a set of tools based on undirected graphical models for accomplishing three important and interrelated goals in genetics: (1) linkage map construction, (2) reconstructing intra- and inter-chromosomal conditional interactions (linkage disequilibrium) networks, and (3) exploring high-dimensional genotype-phenotype network and genotype-phenotype-environment interactions network. For this purpose, we use conditional (in)dependence relationships between variables. The netgwas package can deal with biparental inbreeding and outbreeding species with any ploidy level, namely diploid (2 sets of chromosomes), triploid (3 sets of chromosomes), tetraploid (4 sets of chromosomes) and so on. We target on high-dimensional data where number of variables p is larger than number of sample sizes (p >> n). The computations is memory-optimized using the sparse matrix output. The package is implemented the recent developments in Behrouzi and Wit (2017) <arXiv:1710.00894> and Behrouzi and Wit (2017) <arXiv:1710.01063> .
Author: Pariya Behrouzi and Ernst C. Wit
Maintainer: Pariya Behrouzi <pariya.behrouzi@gmail.com>
Diff between netgwas versions 0.1.3.2 dated 2018-03-13 and 0.1.4.2 dated 2018-04-06
DESCRIPTION | 8 ++--- MD5 | 26 ++++++++-------- R/netmap.R | 23 ++++++++++++-- R/netphenogeno.R | 2 - R/netsnp.R | 2 - R/selectnet.R | 77 +++++++++++++++++++++++++++++++++++++++---------- man/bp.Rd | 4 +- man/buildMap.Rd | 4 +- man/hdl.Rd | 5 ++- man/netmap.Rd | 23 +++++++------- man/netphenogeno.Rd | 9 +++-- man/netsnp.Rd | 6 +-- man/plot.netgwasmap.Rd | 2 - man/plot.select.Rd | 8 +++-- 14 files changed, 134 insertions(+), 65 deletions(-)
Title: Apply a Function Over Expressions
Description: Evaluate a function over a data frame of expressions.
Author: William Michael Landau [aut, cre],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between eply versions 0.1.0 dated 2017-01-27 and 0.1.2 dated 2018-04-06
eply-0.1.0/eply/R/namespace.R |only eply-0.1.2/eply/DESCRIPTION | 17 eply-0.1.2/eply/MD5 | 57 +- eply-0.1.2/eply/R/character.R | 32 - eply-0.1.2/eply/R/checks.R | 35 + eply-0.1.2/eply/R/eply.R | 32 - eply-0.1.2/eply/R/evals.R | 28 - eply-0.1.2/eply/R/examples.R | 41 + eply-0.1.2/eply/R/help.R | 25 - eply-0.1.2/eply/R/package.R |only eply-0.1.2/eply/build/vignette.rds |binary eply-0.1.2/eply/inst/doc/eply.Rmd | 2 eply-0.1.2/eply/inst/doc/eply.html | 508 +++++++++++++++++------- eply-0.1.2/eply/man/eply-package.Rd |only eply-0.1.2/eply/man/eply.Rd | 24 - eply-0.1.2/eply/man/evals.Rd | 7 eply-0.1.2/eply/man/example.expr.Rd | 6 eply-0.1.2/eply/man/example.fun.Rd | 7 eply-0.1.2/eply/man/example.with.Rd | 10 eply-0.1.2/eply/man/help_eply.Rd | 6 eply-0.1.2/eply/man/quotes.Rd | 6 eply-0.1.2/eply/man/strings.Rd | 4 eply-0.1.2/eply/man/unquote.Rd | 8 eply-0.1.2/eply/tests/testthat/test-character.R | 31 - eply-0.1.2/eply/tests/testthat/test-checks.R | 19 eply-0.1.2/eply/tests/testthat/test-eply.R | 56 +- eply-0.1.2/eply/tests/testthat/test-evals.R | 26 - eply-0.1.2/eply/tests/testthat/test-examples.R | 4 eply-0.1.2/eply/tests/testthat/test-help_eply.R | 3 eply-0.1.2/eply/tests/testthat/test-lapply.R | 7 eply-0.1.2/eply/vignettes/eply.Rmd | 2 31 files changed, 668 insertions(+), 335 deletions(-)
Title: Interpolation of Data with Variable Spatial Support
Description: Geostatistical interpolation of data with irregular spatial support such as runoff related data or data from administrative units.
Author: Jon Olav Skoien
Maintainer: Jon Olav Skoien <jon.skoien@gmail.com>
Diff between rtop versions 0.5-13 dated 2018-01-12 and 0.5-14 dated 2018-04-06
DESCRIPTION | 13 +++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/checkVario.R | 9 +++++---- R/krige.R | 2 +- R/rtop.R | 4 ++-- R/sceua.R | 5 ++++- man/checkVario.Rd | 2 +- man/createRtopObject.Rd | 7 ++++--- 9 files changed, 33 insertions(+), 27 deletions(-)
Title: Phylogenetic Tree Manipulation Class and Methods
Description: S4 class and methods for intuitive and efficient phylogenetic tree manipulation.
Author: D.J. Bennett
Maintainer: D.J. Bennett <dominic.john.bennett@gmail.com>
Diff between treeman versions 1.1.1 dated 2017-06-27 and 1.1.2 dated 2018-04-06
DESCRIPTION | 7 ++---- MD5 | 36 +++++++++++++++++----------------- R/calc-methods.R | 24 +++++++++++++++++----- R/check_methods.R | 6 ++--- R/cnvrt-methods.R | 30 ++++++++++++++++------------ R/get-nd-methods.R | 2 - R/get-nds-methods.R | 2 - R/get-spcl-methods.R | 2 - R/manip-methods.R | 7 +++--- R/ndlst-methods.R | 12 +++++------ R/read-write-methods.R | 10 +++++---- R/server-methods.R | 6 +++-- R/set-methods.R | 2 - R/update-methods.R | 15 ++++++++------ man/calcDstRF.Rd | 3 +- src/get_tools.c | 4 +-- tests/testthat/test-calc-methods.R | 8 ++++--- tests/testthat/test-get-nds-methods.R | 2 - tests/testthat/test-manip-methods.R | 5 +++- 19 files changed, 107 insertions(+), 76 deletions(-)
Title: Generates Networks from BTS Data
Description: A flexible tool that allows generating bespoke
air transport statistics for urban studies based on publicly available
data from the Bureau of Transport Statistics (BTS) in the United States
<https://www.transtats.bts.gov/databases.asp?Mode_ID=1&Mode_Desc=Aviation&Subject_ID2=0>.
Author: Filipe Teixeira [aut, cre]
Maintainer: Filipe Teixeira <Filipe.MarquesTeixeira@Ugent.be>
Diff between skynet versions 1.0 dated 2018-01-29 and 1.0.1 dated 2018-04-06
DESCRIPTION | 6 MD5 | 46 +++--- NEWS.md | 13 + R/convertRaw.R | 8 - R/createNodes.R | 7 R/importT100.R | 65 ++++++-- R/netDir.R | 20 +- R/netImport.R | 10 - R/netPath.R | 100 ++++++------- R/netUnd.R | 46 ++++-- R/nodeStats.R | 7 R/plotMap.R | 28 ++- R/skynet.R | 2 README.md | 20 +- build/vignette.rds |binary data/MetroLookup.rda |binary data/carriers.rda |binary inst/doc/skynet.html | 374 ++++++++++---------------------------------------- man/convertRaw.Rd | 2 man/importT100.Rd | 4 man/make.netDir.Rd | 8 - man/make.netUnd.Rd | 2 man/netImport.Rd | 6 man/skynet-package.Rd | 2 24 files changed, 325 insertions(+), 451 deletions(-)
More information about mueRelativeRisk at CRAN
Permanent link
Title: Break Down Plots
Description: Break Down Plots are inspired by waterfall plots created by 'xgboostExplainer' package
(see <https://github.com/AppliedDataSciencePartners/xgboostExplainer>).
The idea behind Break Down Plots it to decompose model prediction for a single observation.
Break Down Plots show the contribution of every variable present in the model.
Such plots will work for binary classifiers and general regression models.
Author: Przemyslaw Biecek [aut, cre]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between breakDown versions 0.1.4 dated 2018-02-27 and 0.1.5 dated 2018-04-06
DESCRIPTION | 11 MD5 | 43 ++- NAMESPACE | 4 NEWS.md | 5 R/betas.R |only R/break.R | 47 ++- build/vignette.rds |binary inst/CITATION |only inst/doc/break_caret.Rmd | 2 inst/doc/break_caret.html | 420 ++++++++++++++++++++++++-------- inst/doc/break_glm.html | 396 +++++++++++++++++++++++------- inst/doc/break_lm.html | 508 +++++++++++++++++++++++++++------------ inst/doc/break_randomForest.html | 416 ++++++++++++++++++++++++------- inst/doc/break_ranger.html | 414 +++++++++++++++++++++++-------- inst/doc/break_svm.R |only inst/doc/break_svm.Rmd |only inst/doc/break_svm.html |only inst/doc/break_xgboost.R |only inst/doc/break_xgboost.Rmd |only inst/doc/break_xgboost.html |only man/betas.Rd |only man/broken.Rd | 2 man/broken.default.Rd | 3 man/broken.glm.Rd | 12 man/broken.lm.Rd | 14 - vignettes/break_caret.Rmd | 2 vignettes/break_svm.Rmd |only vignettes/break_xgboost.Rmd |only 28 files changed, 1700 insertions(+), 599 deletions(-)
Title: Gene and Pathway p-Values Computed using the Adaptive Rank
Truncated Product
Description: For calculating gene and pathway p-values using the Adaptive Rank Truncated Product test.
Author: Kai Yu, Qizhai Li and William Wheeler
Maintainer: Bill Wheeler <wheelerb@imsweb.com>
Diff between ARTP versions 2.0.4 dated 2014-02-20 and 2.0.5 dated 2018-04-06
DESCRIPTION | 12 MD5 | 12 NAMESPACE | 9 R/wga_combine.R | 4910 +++++++++++++++++++++++++------------------------- build/vignette.rds |binary inst/doc/vignette.pdf |binary src/code.c | 22 7 files changed, 2493 insertions(+), 2472 deletions(-)
Title: Downloading Time Series from ALFRED Database for Various
Vintages
Description: Provides direct access to the ALFRED (<https://alfred.stlouisfed.org>) and FRED (<https://fred.stlouisfed.org>) databases.
Its functions return tidy data frames for different releases of the specified time series.
Note that this product uses the FRED© API but is not endorsed or certified by the Federal Reserve Bank of St. Louis.
Author: Onno Kleen [aut, cre]
Maintainer: Onno Kleen <r@onnokleen.de>
Diff between alfred versions 0.1.5 dated 2018-02-20 and 0.1.6 dated 2018-04-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 1 + build/vignette.rds |binary inst/doc/alfred.html | 30 +++++++++++++++--------------- tests/testthat/test_download.R | 4 ++-- 6 files changed, 26 insertions(+), 25 deletions(-)
Title: Fill Missing Values in Satellite Data
Description: Tools to fill missing values in satellite data and to develop new
gap-fill algorithms. The methods are tailored to data (images) observed
at equally-spaced points in time. The package is illustrated with MODIS
NDVI data.
Author: Florian Gerber
Maintainer: Florian Gerber <florian.gerber@math.uzh.ch>
Diff between gapfill versions 0.9.5-3 dated 2017-06-08 and 0.9.6 dated 2018-04-06
DESCRIPTION | 8 +- MD5 | 33 ++++---- NAMESPACE | 2 NEWS | 13 +++ R/RcppExports.R | 2 R/gapfill.R | 164 ++++++++++++++++++++++-------------------- R/zzz.R |only README.md | 2 inst/CITATION | 23 +++-- man/EstimateQuantile.Rd | 5 - man/Extend.Rd | 5 - man/Gapfill.Rd | 21 ++--- man/Score.Rd | 5 - man/Subset-Predict.Rd | 14 ++- man/gapfill-package.Rd | 5 - src/RcppExports.cpp | 4 - src/gapfill.cpp | 2 tests/testthat/test-Gapfill.R | 97 ++++++++++++++++++++++-- 18 files changed, 255 insertions(+), 150 deletions(-)
More information about CustomerScoringMetrics at CRAN
Permanent link
Title: Bayesian Nonparametric Spectral Density Estimation Using
B-Spline Priors
Description: Implementation of a Metropolis-within-Gibbs MCMC algorithm to flexibly estimate the spectral density of a stationary time series. The algorithm updates a nonparametric B-spline prior using the Whittle likelihood to produce pseudo-posterior samples and is based on the work presented in Edwards, M.C., Meyer, R. and Christensen, N., Statistics and Computing (2018). <doi.org/10.1007/s11222-017-9796-9>.
Author: Matthew C. Edwards [aut, cre],
Renate Meyer [aut],
Nelson Christensen [aut]
Maintainer: Matthew C. Edwards <matt.edwards@auckland.ac.nz>
Diff between bsplinePsd versions 0.2.0 dated 2018-02-23 and 0.5.0 dated 2018-04-06
DESCRIPTION | 8 +- MD5 | 35 +++++---- NAMESPACE | 1 NEWS.md | 10 ++ R/RcppExports.R | 26 ++++++ R/gibbs_bspline.R | 146 ++++++++++++++++++++++++--------------- R/internal_gibbs_core.R | 78 +++++++++----------- R/internal_gibbs_s3.R |only R/internal_gibbs_util.R | 17 +++- README.md |only man/bsplinePsd-package.Rd | 4 - man/dbspline.Rd | 18 ++-- man/gibbs_bspline.Rd | 40 +++++----- man/llike.Rd | 2 man/lpost.Rd | 2 man/plot.psd.Rd |only man/qpsd.Rd | 2 man/unrollPsd.Rd |only src/RcppExports.cpp | 61 ++++++++++++++++ src/internal_anint_quadratic.cpp |only src/internal_beyondWhittle.cpp | 18 ++++ 21 files changed, 320 insertions(+), 148 deletions(-)
Title: Two One-Sided Tests (TOST) Equivalence Testing
Description: Two one-sided tests (TOST) procedure to test equivalence for t-tests, correlations, differences between proportions, and meta-analyses, including power analysis for t-tests and correlations. Allows you to specify equivalence bounds in raw scale units or in terms of effect sizes. See: Lakens (2017) <doi:10.1177/1948550617697177>.
Author: Daniel Lakens <D.Lakens@tue.nl>
Maintainer: Daniel Lakens <D.Lakens@tue.nl>
Diff between TOSTER versions 0.3 dated 2017-11-15 and 0.3.1 dated 2018-04-06
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS |only R/TOSTpaired.raw.R | 4 ++-- R/TOSTr.R | 10 +++++----- build/vignette.rds |binary inst/doc/IntroductionToTOSTER.html | 8 ++++---- 7 files changed, 21 insertions(+), 20 deletions(-)
Title: 'Rcpp' Interface to 'PostgreSQL'
Description: Fully 'DBI'-compliant 'Rcpp'-backed interface to 'PostgreSQL' <https://www.postgresql.org/>,
an open-source relational database.
Author: Hadley Wickham [aut],
Jeroen Ooms [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
RStudio [cph],
R Consortium [fnd],
Tomoaki Nishiyama [ctb] (Code for encoding vectors into strings derived
from RPostgreSQL)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RPostgres versions 1.0-4 dated 2017-12-20 and 1.1.0 dated 2018-04-06
RPostgres-1.0-4/RPostgres/src/win32 |only RPostgres-1.1.0/RPostgres/DESCRIPTION | 42 +- RPostgres-1.1.0/RPostgres/MD5 | 66 +-- RPostgres-1.1.0/RPostgres/NAMESPACE | 10 RPostgres-1.1.0/RPostgres/NEWS.md | 12 RPostgres-1.1.0/RPostgres/R/PqConnection.R | 23 - RPostgres-1.1.0/RPostgres/R/PqDriver.R | 2 RPostgres-1.1.0/RPostgres/R/PqResult.R | 32 + RPostgres-1.1.0/RPostgres/R/default.R | 1 RPostgres-1.1.0/RPostgres/R/export.R |only RPostgres-1.1.0/RPostgres/R/quote.R | 68 +++ RPostgres-1.1.0/RPostgres/R/tables.R | 87 ++++ RPostgres-1.1.0/RPostgres/README.md | 2 RPostgres-1.1.0/RPostgres/man/RPostgres-package.Rd | 5 RPostgres-1.1.0/RPostgres/man/dbConnect-PqDriver-method.Rd | 20 - RPostgres-1.1.0/RPostgres/man/postgres-tables.Rd | 10 RPostgres-1.1.0/RPostgres/man/quote.Rd | 11 RPostgres-1.1.0/RPostgres/src/DbColumnDataSource.cpp | 2 RPostgres-1.1.0/RPostgres/src/DbConnection.cpp | 9 RPostgres-1.1.0/RPostgres/src/DbDataFrame.h | 5 RPostgres-1.1.0/RPostgres/src/DbResult.cpp | 7 RPostgres-1.1.0/RPostgres/src/DbResult.h | 3 RPostgres-1.1.0/RPostgres/src/Makevars.win | 6 RPostgres-1.1.0/RPostgres/src/PqColumnDataSource.cpp | 43 +- RPostgres-1.1.0/RPostgres/src/PqColumnDataSourceFactory.cpp | 4 RPostgres-1.1.0/RPostgres/src/PqDataFrame.cpp | 9 RPostgres-1.1.0/RPostgres/src/PqDataFrame.h | 7 RPostgres-1.1.0/RPostgres/src/PqResultImpl.cpp | 216 +++++++----- RPostgres-1.1.0/RPostgres/src/PqResultImpl.h | 9 RPostgres-1.1.0/RPostgres/src/PqUtils.cpp |only RPostgres-1.1.0/RPostgres/src/PqUtils.h |only RPostgres-1.1.0/RPostgres/src/encode.cpp | 94 ++--- RPostgres-1.1.0/RPostgres/src/result.cpp | 5 RPostgres-1.1.0/RPostgres/src/workarounds |only RPostgres-1.1.0/RPostgres/tests/testthat/helper-astyle.R | 25 - RPostgres-1.1.0/RPostgres/tests/testthat/test-dbGetQuery.R | 2 RPostgres-1.1.0/RPostgres/tests/testthat/test-types.R |only 37 files changed, 550 insertions(+), 287 deletions(-)
Title: Inference and Clustering of Functional Data
Description: Some methods for the inference and clustering of univariate and
multivariate functional data, using a generalization of Mahalanobis
distance, along with some functions useful for the analysis of functional data.
For further details, see Martino A., Ghiglietti, A., Ieva, F. and Paganoni A. M. (2017) <arXiv:1708.00386>.
Author: Andrea Martino [aut, cre],
Andrea Ghiglietti [aut],
Francesca Ieva [aut],
Anna Maria Paganoni [aut]
Maintainer: Andrea Martino <andrea.martino@polimi.it>
Diff between gmfd versions 1.0 dated 2017-12-18 and 1.0.1 dated 2018-04-06
DESCRIPTION | 14 +++++++------- MD5 | 14 +++++++------- R/distance.R | 2 +- R/kmeans.R | 6 +++--- build/vignette.rds |binary inst/doc/kmeans_vignette.Rmd | 2 +- inst/doc/kmeans_vignette.html | 14 +++++++------- vignettes/kmeans_vignette.Rmd | 2 +- 8 files changed, 27 insertions(+), 27 deletions(-)
Title: Furniture for Quantitative Scientists
Description: Contains three main functions (i.e., three pieces of furniture):
table1() which produces a well-formatted table of descriptives common as Table 1
in research articles, tableC() which produces a well-formatted table of correlations,
tableF() which provides frequency counts,
and washer() which is helpful in cleaning up the data. In addition,
long() and wide(), built on the stats::reshape(), can help reformat the data.
These furniture-themed functions are designed to simplify common tasks in
quantitative analysis. Other data summary and cleaning tools are also available.
Author: Tyson S. Barrett [aut, cre] (<https://orcid.org/0000-0002-2137-1391>),
Emily Brignone [aut],
Daniel J. Laxman [aut]
Maintainer: Tyson S. Barrett <t.barrett@aggiemail.usu.edu>
Diff between furniture versions 1.7.3 dated 2018-01-17 and 1.7.6 dated 2018-04-06
DESCRIPTION | 13 MD5 | 40 +- NAMESPACE | 3 NEWS.md | 9 R/Table1.R | 7 R/operators.R | 5 R/rowmeans.R | 2 R/table1_utils.R | 8 R/table_cor.R | 4 R/to_latex2.R |only R/utils.R | 62 --- R/washer.R | 20 - R/zzz.R | 2 build/vignette.rds |binary inst/doc/Furniture.html | 693 ++++++++++++++++++++++++++-------------- inst/doc/Table1.html | 444 ++++++++++++++++++------- man/grapes-xt-grapes.Rd | 3 man/rowmeans.Rd | 2 man/table1.Rd | 2 man/to_latex.Rd |only tests/testthat/test_table1.R | 4 tests/testthat/test_table_cor.R | 2 22 files changed, 861 insertions(+), 464 deletions(-)
Title: Statistical Methods for Anthropometric Data
Description: Statistical methodologies especially developed to analyze anthropometric data. These methods are aimed at providing effective solutions to some commons problems related to Ergonomics and Anthropometry. They are based on clustering, the statistical concept of data depth, statistical shape analysis and archetypal analysis.
Author: Guillermo Vinue, Irene Epifanio, Amelia Simo, M. Victoria Ibanez, Juan Domingo, Guillermo Ayala
Maintainer: Guillermo Vinue <Guillermo.Vinue@uv.es>
Diff between Anthropometry versions 1.9 dated 2017-08-29 and 1.10 dated 2018-04-06
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 7 +++++++ R/getDistMatrix.R | 24 ++++++++++++------------ build/vignette.rds |binary inst/doc/Anthropometry.pdf |binary man/Anthropometry-package.Rd | 4 ++-- 7 files changed, 32 insertions(+), 25 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-05 4.0.0
Title: Create Dummy Variables from Categorical Data
Description: Create dummy variables from categorical data.
This package can convert categorical data (factor and ordered) into
dummy variables and handle multiple columns simultaneously.
This package enables to select whether a dummy variable for base group
is included (for principal component analysis/factor analysis) or
excluded (for regression analysis) by an option.
Author: Toshiaki Ara [aut, cre]
Maintainer: Toshiaki Ara <toshiaki.ara@gmail.com>
Diff between makedummies versions 1.0 dated 2017-01-02 and 1.1 dated 2018-04-06
DESCRIPTION | 15 ++++--- GPL-2 |only MD5 | 12 +++-- NAMESPACE | 6 +- NEWS |only R/makedummies.R | 108 +++++++++++++++++++++++++++++++++++++++++++++++++---- README.md | 3 - man/makedummies.Rd | 59 +++++++++++++--------------- 8 files changed, 149 insertions(+), 54 deletions(-)
Title: Univariate Kernel Density Estimation
Description: Provides an efficient implementation of univariate local polynomial
kernel density estimators that can handle bounded and discrete data. See
Geenens (2014) <arXiv:1303.4121>,
Geenens and Wang (2018) <arXiv:1602.04862>,
Nagler (2018a) <arXiv:1704.07457>,
Nagler (2018b) <arXiv:1705.05431>.
Author: Thomas Nagler [aut, cre],
Thibault Vatter [aut]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between kde1d versions 0.1.0 dated 2018-03-26 and 0.1.1 dated 2018-04-06
DESCRIPTION | 6 +- MD5 | 8 +-- NEWS.md | 7 ++ inst/include/interpolation.hpp | 107 +++++++++++++++++++++-------------------- tests/testthat/Rplots.pdf |binary 5 files changed, 71 insertions(+), 57 deletions(-)
Title: Bayesian Additive Regression Trees
Description: An advanced implementation of Bayesian Additive Regression Trees with expanded features for data analysis and visualization.
Author: Adam Kapelner and Justin Bleich (R package)
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between bartMachine versions 1.2.4 dated 2018-03-02 and 1.2.4.1 dated 2018-04-06
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/zzz.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Bayes Factors for Hierarchical Linear Models with Continuous
Predictors
Description: Runs hierarchical linear Bayesian models. Samples from the posterior
distributions of model parameters in JAGS (Just Another Gibbs Sampler;
Plummer, 2017, <http://mcmc-jags.sourceforge.net>). Computes Bayes factors for group
parameters of interest with the Savage-Dickey density ratio (Wetzels,
Raaijmakers, Jakab, Wagenmakers, 2009, <doi:10.3758/PBR.16.4.752>).
Author: Mirko Thalmann [aut, cre],
Marcel Niklaus [aut],
Klaus Oberauer [ths],
John Kruschke [ctb]
Maintainer: Mirko Thalmann <mirkothalmann@hotmail.com>
Diff between BayesRS versions 0.1.2 dated 2017-10-18 and 0.1.3 dated 2018-04-06
DESCRIPTION | 12 MD5 | 27 NAMESPACE | 74 +- R/HDIofMCMC.R | 44 - R/bayesrs-data.R | 24 R/hello.R | 36 - R/modelrun.R | 1107 ++++++++++++++++--------------- R/modeltext.R | 1253 ++++++++++++++++++------------------ R/plotPostMT_HDImeans2.R | 176 ++--- build/vignette.rds |binary inst/doc/BayesRS_overview.pdf.asis | 4 man/bayesrsdata.Rd | 156 ++-- man/modelrun.Rd | 462 ++++++------- tests |only vignettes/BayesRS_overview.pdf.asis | 4 15 files changed, 1698 insertions(+), 1681 deletions(-)
Title: Zero-Inflated Poisson Hidden (Semi-)Markov Models
Description: Fit zero-inflated Poisson hidden (semi-)Markov models with or without covariates by directly minimizing the negative log likelihood function using the gradient descent algorithm. Multiple starting values should be used to avoid local minima.
Author: Zekun (Jack) Xu, Ye Liu
Maintainer: Zekun (Jack) Xu <zekunxu@gmail.com>
Diff between ziphsmm versions 2.0.2 dated 2018-03-10 and 2.0.3 dated 2018-04-06
DESCRIPTION | 8 +++--- MD5 | 10 ++++---- R/dist_learn.R | 58 ++++++++++++++++++++++++++-------------------- R/dist_learn2.R | 61 +++++++++++++++++++++++++------------------------ R/package.R | 4 +-- man/package-ziphsmm.Rd | 4 +-- 6 files changed, 78 insertions(+), 67 deletions(-)
Title: Translate CSS Selectors to XPath Expressions
Description: Translates a CSS3 selector into an equivalent XPath
expression. This allows us to use CSS selectors when working with
the XML package as it can only evaluate XPath expressions. Also
provided are convenience functions useful for using CSS selectors on
XML nodes. This package is a port of the Python package 'cssselect'
(<https://cssselect.readthedocs.io/>).
Author: Simon Potter [aut, trl, cre],
Simon Sapin [aut],
Ian Bicking [aut]
Maintainer: Simon Potter <simon@sjp.co.nz>
Diff between selectr versions 0.4-0 dated 2018-03-27 and 0.4-1 dated 2018-04-06
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/parser.R | 6 +++--- R/xpath.R | 11 ++++++++++- README.md | 2 +- inst/NEWS.Rd | 17 +++++++++++++++++ 6 files changed, 40 insertions(+), 14 deletions(-)
Title: An R Package for Facilitating Large-Scale Latent Variable
Analyses in Mplus
Description: Leverages the R language to automate latent variable model estimation
and interpretation using 'Mplus', a powerful latent variable modeling program
developed by Muthen and Muthen (<http://www.statmodel.com>). Specifically, this package
provides routines for creating related groups of models, running batches of
models, and extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist [aut, cre],
Joshua Wiley [aut],
Caspar van Lissa [ctb]
Maintainer: Michael Hallquist <michael.hallquist@gmail.com>
Diff between MplusAutomation versions 0.7-1 dated 2018-01-31 and 0.7-2 dated 2018-04-06
DESCRIPTION | 17 ++-- MD5 | 40 ++++++----- NAMESPACE | 9 ++ NEWS | 7 + R/MplusAutomation.R | 6 - R/extractIndirect.R | 72 ++++++++++++++++++-- R/extractSaveData.R | 40 ++++++----- R/mixtures.R |only R/parseOutput.R | 146 ++++++++++++++++++++++++++++++++++++++++- R/readModels.R | 2 R/summary.R | 7 + R/utilityFunctions.R | 3 build/vignette.rds |binary inst/doc/Vignette.pdf |binary man/MplusAutomation.Rd | 4 - man/SummaryTable.Rd | 8 +- man/createMixtures.Rd |only man/extractIndirect.Rd | 5 - man/extractIndirect_section.Rd |only man/mixtureSummaryTable.Rd |only man/plotGrowthMixtures.Rd |only man/plotLTA.Rd |only man/plotMixtureDensities.Rd |only man/plotMixtures.Rd |only man/readModels.Rd | 2 25 files changed, 302 insertions(+), 66 deletions(-)
More information about MplusAutomation at CRAN
Permanent link
Title: The 'jamovi' Analyses
Description: A suite of common statistical methods such as descriptives,
t-tests, ANOVAs, regression, correlation matrices, proportion tests,
contingency tables, and factor analysis. This package is also useable from
the 'jamovi' statistical spreadsheet (see <https://www.jamovi.org> for more
information).
Author: Ravi Selker, Jonathon Love, Damian Dropmann
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmv versions 0.8.6 dated 2018-03-27 and 0.8.6.2 dated 2018-04-06
DESCRIPTION | 18 ++++++------- MD5 | 40 +++++++++++++++++------------- R/anovarm.b.R | 12 ++++----- R/anovarmnp.b.R | 14 ++++++++++ R/anovarmnp.h.R | 22 +++++++++++++++++ R/linreg.b.R | 12 ++++++--- R/linreg.h.R | 2 - R/loglinear.b.R | 2 - R/logregbin.b.R | 2 - R/logregmulti.b.R | 2 - R/ttestis.b.R | 39 +++++++++++++++++++++++++++--- R/ttestis.h.R | 44 +++++++++++++++++----------------- R/ttestones.h.R | 34 +++++++++++++------------- R/ttestps.h.R | 34 +++++++++++++------------- man/anovaRMNP.Rd | 1 man/linReg.Rd | 2 - tests/testthat/testancova.R |only tests/testthat/testanovanp.R |only tests/testthat/testanovarmnp.R |only tests/testthat/testconttablespaired.R |only tests/testthat/testcorrmatrix.R | 5 ++- tests/testthat/testdescriptives.R | 19 ++++++++++---- tests/testthat/testproptest2.R |only tests/testthat/testproptestn.R |only 24 files changed, 197 insertions(+), 107 deletions(-)