Title: 'WebDriver' Client for 'PhantomJS'
Description: A client for the 'WebDriver' 'API'. It allows driving a
(probably headless) web browser, and can be used to test web
applications, including 'Shiny' apps. In theory it works with any
'WebDriver' implementation, but it was only tested with 'PhantomJS'.
Author: Ariya Hidayat, Gábor Csárdi, Gabor Torok, Ivan De Marino, Robert Gieseke,
Steven Masala, Winston Chang, Zack Weinberg
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between webdriver versions 1.0.4 dated 2018-02-04 and 1.0.5 dated 2018-04-10
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ R/element.R | 12 ++++++++---- R/errors.R | 25 +++++++++++++++++++------ R/install-phantomjs.R | 7 +++++-- R/run-phantomjs.R | 40 +++++++++++++++++++++++++++++++++++++++- R/session.R | 17 +++++++++++++++++ 8 files changed, 107 insertions(+), 24 deletions(-)
Title: Call R from R
Description: It is sometimes useful to perform a computation in a
separate R process, without affecting the current R process at all.
This packages does exactly that.
Author: Gábor Csárdi, Winston Chang
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between callr versions 2.0.2 dated 2018-02-11 and 2.0.3 dated 2018-04-10
DESCRIPTION | 8 +-- MD5 | 59 ++++++++++++----------- NEWS.md | 11 ++++ R/error.R | 8 ++- R/eval-bg.R | 7 ++ R/eval.R | 7 ++ R/options.R | 8 ++- R/process-initialize.R | 5 +- R/process-process.R | 49 ++++++++++++++++--- R/r-process.R | 3 - R/rcmd-bg.R | 6 ++ R/result.R | 22 +++++++- R/script.R | 6 +- R/utils.R | 8 +++ man/make_error.Rd | 4 + man/process.Rd | 24 ++++++++- man/process_initialize.Rd | 5 +- man/r.Rd | 9 ++- man/r_bg.Rd | 8 ++- man/rcmd.Rd | 2 man/rcmd_bg.Rd | 7 ++ src/tools/px.dSYM/Contents/Resources/DWARF/px |binary src/unix/callr-unix.h | 2 src/unix/callr.c | 65 ++++++++++++++++++++------ src/unix/childlist.c | 2 src/unix/sigchld.c | 8 ++- tests/testthat.R | 2 tests/testthat/test-error.R | 35 +++++++++++++- tests/testthat/test-process.R | 27 ++++++++++ tests/testthat/test-r-bg.R | 2 tests/testthat/test-sigchld.R |only 31 files changed, 317 insertions(+), 92 deletions(-)
Title: Spatial Nonparametric Covariance Functions
Description: R functions for analyzing spatial (cross-)covariance: the
nonparametric (cross-)covariance, the spline correlogram, the
nonparametric phase coherence function, and related.
Author: Ottar N. Bjornstad [aut, cre]
Maintainer: Ottar N. Bjornstad <onb1@psu.edu>
Diff between ncf versions 1.2-1 dated 2018-03-14 and 1.2-2 dated 2018-04-10
CHANGES | 4 DESCRIPTION | 8 - MD5 | 28 +++--- R/ncf.r | 12 +- man/Sncf.Rd | 12 +- man/Sncf.srf.Rd | 4 man/Sncf2D.Rd | 2 man/correlog.Rd | 6 - man/correlog.nc.Rd | 194 +++++++++++++++++++++++----------------------- man/lbm.Rd | 2 man/lisa.Rd | 3 man/lisa.nc.Rd | 2 man/mSynch.Rd | 6 - man/spline.correlog.2D.Rd | 4 man/spline.correlog.Rd | 2 15 files changed, 146 insertions(+), 143 deletions(-)
Title: Multivariate Covariance Generalized Linear Models
Description: Fitting multivariate covariance generalized linear
models (McGLMs) to data. McGLM is a general framework for non-normal
multivariate data analysis, designed to handle multivariate response
variables, along with a wide range of temporal and spatial correlation
structures defined in terms of a covariance link function combined
with a matrix linear predictor involving known matrices.
The models take non-normality into account in the conventional way
by means of a variance function, and the mean structure is modelled
by means of a link function and a linear predictor.
The models are fitted using an efficient Newton scoring algorithm
based on quasi-likelihood and Pearson estimating functions, using
only second-moment assumptions. This provides a unified approach to
a wide variety of different types of response variables and covariance
structures, including multivariate extensions of repeated measures,
time series, longitudinal, spatial and spatio-temporal structures.
The package offers a user-friendly interface for fitting McGLMs
similar to the glm() R function.
See Bonat (2018) <doi:10.18637/jss.v084.i04>, for more information
and examples.
Author: Wagner Hugo Bonat [aut, cre],
Walmes Marques Zeviani [ctb],
Fernando de Pol Mayer [ctb]
Maintainer: Wagner Hugo Bonat <wbonat@ufpr.br>
Diff between mcglm versions 0.3.0 dated 2016-06-13 and 0.4.0 dated 2018-04-10
mcglm-0.3.0/mcglm/inst/doc/vignette-01.R |only mcglm-0.3.0/mcglm/inst/doc/vignette-01.Rmd |only mcglm-0.3.0/mcglm/inst/doc/vignette-01.html |only mcglm-0.3.0/mcglm/vignettes/vignette-01.Rmd |only mcglm-0.4.0/mcglm/DESCRIPTION | 16 mcglm-0.4.0/mcglm/MD5 | 215 +++--- mcglm-0.4.0/mcglm/NAMESPACE | 7 mcglm-0.4.0/mcglm/R/fit_mcglm.R | 38 - mcglm-0.4.0/mcglm/R/mc_KLIC.R | 4 mcglm-0.4.0/mcglm/R/mc_S3_methods.R | 1 mcglm-0.4.0/mcglm/R/mc_car.R | 4 mcglm-0.4.0/mcglm/R/mc_complete_data.R |only mcglm-0.4.0/mcglm/R/mc_compute_rho.R | 4 mcglm-0.4.0/mcglm/R/mc_conditional_test.R | 4 mcglm-0.4.0/mcglm/R/mc_core_cross_variability.R | 2 mcglm-0.4.0/mcglm/R/mc_cross_sensitivity.R | 2 mcglm-0.4.0/mcglm/R/mc_dglm.R |only mcglm-0.4.0/mcglm/R/mc_dist.R | 6 mcglm-0.4.0/mcglm/R/mc_ess.R | 10 mcglm-0.4.0/mcglm/R/mc_gof.R | 12 mcglm-0.4.0/mcglm/R/mc_id.R | 4 mcglm-0.4.0/mcglm/R/mc_ma.R | 10 mcglm-0.4.0/mcglm/R/mc_main_function.R | 13 mcglm-0.4.0/mcglm/R/mc_matrix_linear_predictor.R | 8 mcglm-0.4.0/mcglm/R/mc_mixed.R | 6 mcglm-0.4.0/mcglm/R/mc_ns.R |only mcglm-0.4.0/mcglm/R/mc_pAIC.R | 4 mcglm-0.4.0/mcglm/R/mc_pBIC.R |only mcglm-0.4.0/mcglm/R/mc_pearson.R | 2 mcglm-0.4.0/mcglm/R/mc_remove_na.R |only mcglm-0.4.0/mcglm/R/mc_rw.R | 10 mcglm-0.4.0/mcglm/R/mc_sensitivity.R | 2 mcglm-0.4.0/mcglm/R/mc_sic.R | 6 mcglm-0.4.0/mcglm/R/mc_sic_covariance.R | 8 mcglm-0.4.0/mcglm/R/mc_twin.R |only mcglm-0.4.0/mcglm/R/mcglm.R | 26 mcglm-0.4.0/mcglm/build/vignette.rds |binary mcglm-0.4.0/mcglm/inst/CITATION |only mcglm-0.4.0/mcglm/inst/doc/GLMExamples.R | 10 mcglm-0.4.0/mcglm/inst/doc/GLMExamples.Rmd | 16 mcglm-0.4.0/mcglm/inst/doc/GLMExamples.html | 613 ++++++++++++------- mcglm-0.4.0/mcglm/inst/doc/UniModels.R | 4 mcglm-0.4.0/mcglm/inst/doc/UniModels.Rmd | 11 mcglm-0.4.0/mcglm/inst/doc/UniModels.html | 620 +++++++++++++------- mcglm-0.4.0/mcglm/man/ESS.Rd | 11 mcglm-0.4.0/mcglm/man/GOSHO.Rd | 7 mcglm-0.4.0/mcglm/man/Hunting.Rd | 10 mcglm-0.4.0/mcglm/man/NewBorn.Rd | 5 mcglm-0.4.0/mcglm/man/RJC.Rd | 7 mcglm-0.4.0/mcglm/man/ahs.Rd | 3 mcglm-0.4.0/mcglm/man/anova.mcglm.Rd | 1 mcglm-0.4.0/mcglm/man/coef.mcglm.Rd | 1 mcglm-0.4.0/mcglm/man/confint.mcglm.Rd | 1 mcglm-0.4.0/mcglm/man/covprod.Rd | 3 mcglm-0.4.0/mcglm/man/fit_mcglm.Rd | 45 - mcglm-0.4.0/mcglm/man/fitted.mcglm.Rd | 1 mcglm-0.4.0/mcglm/man/gof.Rd | 13 mcglm-0.4.0/mcglm/man/mc_bias_corrected_std.Rd | 7 mcglm-0.4.0/mcglm/man/mc_build_C.Rd | 1 mcglm-0.4.0/mcglm/man/mc_build_bdiag.Rd | 1 mcglm-0.4.0/mcglm/man/mc_build_omega.Rd | 1 mcglm-0.4.0/mcglm/man/mc_build_sigma.Rd | 7 mcglm-0.4.0/mcglm/man/mc_build_sigma_between.Rd | 1 mcglm-0.4.0/mcglm/man/mc_car.Rd | 11 mcglm-0.4.0/mcglm/man/mc_complete_data.Rd |only mcglm-0.4.0/mcglm/man/mc_compute_rho.Rd | 11 mcglm-0.4.0/mcglm/man/mc_conditional_test.Rd | 5 mcglm-0.4.0/mcglm/man/mc_core_pearson.Rd | 1 mcglm-0.4.0/mcglm/man/mc_correction.Rd | 1 mcglm-0.4.0/mcglm/man/mc_cross_sensitivity.Rd | 3 mcglm-0.4.0/mcglm/man/mc_cross_variability.Rd | 1 mcglm-0.4.0/mcglm/man/mc_derivative_C_rho.Rd | 1 mcglm-0.4.0/mcglm/man/mc_derivative_cholesky.Rd | 1 mcglm-0.4.0/mcglm/man/mc_derivative_expm.Rd | 7 mcglm-0.4.0/mcglm/man/mc_derivative_sigma_beta.Rd | 1 mcglm-0.4.0/mcglm/man/mc_dexp_gold.Rd | 7 mcglm-0.4.0/mcglm/man/mc_dglm.Rd |only mcglm-0.4.0/mcglm/man/mc_dist.Rd | 11 mcglm-0.4.0/mcglm/man/mc_expm.Rd | 7 mcglm-0.4.0/mcglm/man/mc_getInformation.Rd | 1 mcglm-0.4.0/mcglm/man/mc_id.Rd | 11 mcglm-0.4.0/mcglm/man/mc_initial_values.Rd | 1 mcglm-0.4.0/mcglm/man/mc_link_function.Rd | 19 mcglm-0.4.0/mcglm/man/mc_list2vec.Rd | 1 mcglm-0.4.0/mcglm/man/mc_ma.Rd | 11 mcglm-0.4.0/mcglm/man/mc_matrix_linear_predictor.Rd | 15 mcglm-0.4.0/mcglm/man/mc_mixed.Rd | 13 mcglm-0.4.0/mcglm/man/mc_ns.Rd |only mcglm-0.4.0/mcglm/man/mc_pearson.Rd | 3 mcglm-0.4.0/mcglm/man/mc_quasi_score.Rd | 1 mcglm-0.4.0/mcglm/man/mc_remove_na.Rd |only mcglm-0.4.0/mcglm/man/mc_robust_std.Rd | 7 mcglm-0.4.0/mcglm/man/mc_rw.Rd | 11 mcglm-0.4.0/mcglm/man/mc_sandwich.Rd | 7 mcglm-0.4.0/mcglm/man/mc_sensitivity.Rd | 3 mcglm-0.4.0/mcglm/man/mc_sic.Rd | 13 mcglm-0.4.0/mcglm/man/mc_sic_covariance.Rd | 15 mcglm-0.4.0/mcglm/man/mc_transform_list_bdiag.Rd | 1 mcglm-0.4.0/mcglm/man/mc_twin.Rd |only mcglm-0.4.0/mcglm/man/mc_updateBeta.Rd | 1 mcglm-0.4.0/mcglm/man/mc_updateCov.Rd | 1 mcglm-0.4.0/mcglm/man/mc_variability.Rd | 1 mcglm-0.4.0/mcglm/man/mc_variance_function.Rd | 11 mcglm-0.4.0/mcglm/man/mcglm.Rd | 14 mcglm-0.4.0/mcglm/man/pAIC.Rd | 11 mcglm-0.4.0/mcglm/man/pBIC.Rd |only mcglm-0.4.0/mcglm/man/pKLIC.Rd | 11 mcglm-0.4.0/mcglm/man/plogLik.Rd | 1 mcglm-0.4.0/mcglm/man/plot.mcglm.Rd | 7 mcglm-0.4.0/mcglm/man/print.mcglm.Rd | 7 mcglm-0.4.0/mcglm/man/residuals.mcglm.Rd | 7 mcglm-0.4.0/mcglm/man/soil.Rd | 7 mcglm-0.4.0/mcglm/man/soya.Rd | 5 mcglm-0.4.0/mcglm/man/summary.mcglm.Rd | 7 mcglm-0.4.0/mcglm/man/vcov.mcglm.Rd | 1 mcglm-0.4.0/mcglm/vignettes/GLMExamples.Rmd | 16 mcglm-0.4.0/mcglm/vignettes/UniModels.Rmd | 11 117 files changed, 1251 insertions(+), 893 deletions(-)
Title: Exemplar Data Sets for Student Growth Percentiles (SGP) Analyses
Description: Data sets utilized by the 'SGP' package as exemplars for users to conduct their own student growth percentiles (SGP) analyses.
Author: Damian W. Betebenner [aut, cre],
Adam R. Van Iwaarden [aut],
Ben Domingue [aut]
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>
Diff between SGPdata versions 17.0-0.0 dated 2017-04-13 and 20.0-0.0 dated 2018-04-10
DESCRIPTION | 29 ++++++----- MD5 | 37 +++++++++----- NAMESPACE | 1 R/zzz.R | 6 +- build |only data/sgpData.rda |binary data/sgpData_INSTRUCTOR_NUMBER.rda |binary data/sgpData_LONG.rda |binary data/sgptData_LONG.rda |binary inst/CITATION | 18 +++---- inst/NEWS | 92 ++++++++++++++++++++----------------- inst/doc |only man/SGPdata-package.Rd | 8 +-- man/sgpData.Rd | 21 ++++---- man/sgpData_INSTRUCTOR_NUMBER.Rd | 1 man/sgpData_LONG.Rd | 1 man/sgptData_LONG.Rd | 1 vignettes |only 18 files changed, 118 insertions(+), 97 deletions(-)
Title: Client for 'Mapzen' and Related Map APIs
Description: Provides an interface to 'Mapzen'-based APIs (including
geocode.earth, Nextzen, and NYC GeoSearch) for geographic search
and geocoding, isochrone calculation, and vector data to draw map tiles.
See <https://mapzen.com/documentation/> for more information. The original
Mapzen has gone out of business, but 'rmapzen' can be set up to work with
any provider who implements the Mapzen API.
Author: Tarak Shah [aut, cre],
Daniel Possenriede [ctb]
Maintainer: Tarak Shah <tarak_shah@berkeley.edu>
Diff between rmapzen versions 0.3.3 dated 2017-08-12 and 0.3.4 dated 2018-04-10
DESCRIPTION | 21 + LICENSE | 4 MD5 | 144 +++++----- NAMESPACE | 105 ++++--- NEWS.md | 63 ++-- R/as-sf.R | 80 +++--- R/as-sp.R | 194 +++++++------- R/collapse-properties.R | 26 - R/costing-models.R | 234 ++++++++--------- R/data.R | 72 ++--- R/geocode.R | 78 ++--- R/isochrone.R | 382 ++++++++++++++--------------- R/matrix-helpers.R | 226 ++++++++--------- R/matrix-main.R | 40 +-- R/mz-autocomplete.R | 128 ++++----- R/mz-bbox.R | 350 +++++++++++++------------- R/mz-coordinates.R | 58 ++-- R/mz-key.R | 9 R/mz-place.R | 94 +++---- R/mz-references.R | 150 +++++------ R/mz-reverse.R | 84 +++--- R/mz-search-main.R | 87 +++--- R/mz-search.R | 256 +++++++++---------- R/mz-tile-coordinates.R | 260 +++++++++---------- R/print-mapzen-geo-list.R | 110 ++++---- R/print-vector-tiles.R | 78 ++--- R/providers.R |only R/rmapzen.R | 138 +++++----- R/string-array.R | 10 R/structured-search.R | 208 +++++++-------- R/tidy.R | 78 ++--- R/unwrap.R | 50 +-- R/usage-statistics.R | 232 ++++++++--------- R/vector-tiles.R | 293 +++++++++++----------- R/zzz.R |only README.md | 34 +- man/as_sf.Rd | 46 +-- man/as_sp.Rd | 52 +-- man/ca_tiles.Rd | 36 +- man/costing_models.Rd | 100 +++---- man/mapzen_references.Rd | 82 +++--- man/marina_walks.Rd | 38 +- man/marina_walks_polygons.Rd | 42 +-- man/mz_bbox.Rd | 82 +++--- man/mz_check_usage.Rd | 36 +- man/mz_contours.Rd | 36 +- man/mz_coordinates.Rd | 48 +-- man/mz_date_time.Rd | 36 +- man/mz_geocode.Rd | 66 ++--- man/mz_isochrone.Rd | 136 +++++----- man/mz_location.Rd | 74 ++--- man/mz_place.Rd | 65 ++-- man/mz_provider.Rd |only man/mz_set_host.Rd |only man/mz_structured_search.Rd | 98 +++---- man/mz_tile_coordinates.Rd | 128 ++++----- man/mz_vector_tiles.Rd | 112 ++++---- man/oakland_public.Rd | 38 +- man/rmapzen.Rd | 160 ++++++------ man/search.Rd | 154 +++++------ tests/testthat.R | 8 tests/testthat/helpers.R | 44 ++- tests/testthat/test-as-data-frame.R | 46 +-- tests/testthat/test-as-sf.R | 70 ++--- tests/testthat/test-as-sp.R | 72 ++--- tests/testthat/test-mz-autocomplete.R | 94 +++---- tests/testthat/test-mz-bbox.R | 112 ++++---- tests/testthat/test-mz-isochrone.R | 224 ++++++++--------- tests/testthat/test-mz-place.R | 48 +-- tests/testthat/test-mz-reverse.R | 224 ++++++++--------- tests/testthat/test-mz-search.R | 270 ++++++++++---------- tests/testthat/test-mz-structured-search.R | 130 ++++----- tests/testthat/test-mz-vector-tiles.R | 52 +-- tests/testthat/test-tile-coordinates.R | 104 +++---- tests/testthat/test-usage-statistics.R | 122 ++++----- 75 files changed, 3870 insertions(+), 3791 deletions(-)
Title: Regression of Network Responses
Description: Regress network responses (both directed and undirected) onto covariates of interest that may be actor-, relation-, or network-valued. In addition, compute principled variance estimates of the coefficients assuming that the errors are jointly exchangeable. Missing data is accommodated. Additionally implements building and inversion of covariance matrices under joint exchangeability, and generates random covariance matrices of this class. For more detail on methods, see Marrs, Fosdick, and McCormick (2017) <arXiv:1701.05530>.
Author: Frank W. Marrs [aut, cre],
Bailey K. Fosdick [aut],
Tyler H. McCormick [aut]
Maintainer: Frank W. Marrs <frank.marrs@colostate.edu>
Diff between netregR versions 0.1.0 dated 2018-04-06 and 0.3.0 dated 2018-04-10
netregR-0.1.0/netregR/R/vhat_exch.R |only netregR-0.1.0/netregR/man/print.summary.vexch.Rd |only netregR-0.1.0/netregR/man/print.vexch.Rd |only netregR-0.1.0/netregR/man/summary.vexch.Rd |only netregR-0.1.0/netregR/man/vhat_exch.Rd |only netregR-0.3.0/netregR/DESCRIPTION | 16 +++- netregR-0.3.0/netregR/MD5 | 38 +++++++---- netregR-0.3.0/netregR/NAMESPACE | 12 +++ netregR-0.3.0/netregR/R/helpers.R | 41 +++++++++++- netregR-0.3.0/netregR/R/lmnet.R | 75 ++++++++++++++++------- netregR-0.3.0/netregR/R/vnet.R |only netregR-0.3.0/netregR/build |only netregR-0.3.0/netregR/inst |only netregR-0.3.0/netregR/man/coef.lmnet.Rd | 12 ++- netregR-0.3.0/netregR/man/meat.DC.row.Rd |only netregR-0.3.0/netregR/man/model.matrix.lmnet.Rd |only netregR-0.3.0/netregR/man/plot.lmnet.Rd | 12 ++- netregR-0.3.0/netregR/man/print.lmnet.Rd | 12 ++- netregR-0.3.0/netregR/man/print.summary.lmnet.Rd | 12 ++- netregR-0.3.0/netregR/man/print.summary.vnet.Rd |only netregR-0.3.0/netregR/man/print.vnet.Rd |only netregR-0.3.0/netregR/man/summary.lmnet.Rd | 12 ++- netregR-0.3.0/netregR/man/summary.vnet.Rd |only netregR-0.3.0/netregR/man/vcov.lmnet.Rd | 12 ++- netregR-0.3.0/netregR/man/vnet.Rd |only netregR-0.3.0/netregR/vignettes |only 26 files changed, 185 insertions(+), 69 deletions(-)
Title: Genetic Rare Variants Tests
Description: Tests for genetic rare variants.
Author: Thomas Hoffmann <tjhoffm@gmail.com>
Maintainer: Thomas Hoffmann <tjhoffm@gmail.com>
Diff between thgenetics versions 0.3-4.1 dated 2016-07-10 and 0.4-0 dated 2018-04-10
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NAMESPACE | 2 +- R/export.R | 4 ++-- R/raremethods-clean.R | 16 ++++++++++------ man/rareGeneTest.Rd | 33 +++++++++++++++++++++++---------- src/raremethods.cpp | 18 ++++++++++-------- src/thgenetics_init.c |only 8 files changed, 57 insertions(+), 37 deletions(-)
Title: Create n-Dimensional, Quasi-Proportional Venn Diagrams
Description: Provides an interface for the nVenn algorithm
(Perez-Silva et al. 2018) <DOI:10.1093/bioinformatics/bty109>. This algorithm works for any number of sets,
and usually yields pleasing and informative Venn diagrams with proportionality information.
However, representing more than six sets takes a long time and is hard to interpret, unless many of the
regions are empty. If you cannot make sense of the result, you may want to consider 'UpSetR'
<https://cran.r-project.org/package=UpSetR/README.html>.
Author: Victor Quesada [aut, cre, cph]
Maintainer: Victor Quesada <quesadavictor@uniovi.es>
Diff between nVennR versions 0.1.5 dated 2018-03-23 and 0.2.0 dated 2018-04-10
DESCRIPTION | 13 - MD5 | 29 ++- NAMESPACE | 6 R/RcppExports.R | 8 R/hello.R | 425 +++++++++++++++++++++++++++++++++++++++++++++---- build |only data |only inst |only man/createVennObj.Rd |only man/exampledf.Rd |only man/getVennRegion.Rd |only man/listVennRegions.Rd |only man/oldShowSVG.Rd |only man/plotVenn.Rd |only man/setVennRegion.Rd |only man/showSVG.Rd | 29 ++- man/toVenn.Rd | 16 - src/RcppExports.cpp | 27 +++ src/topol.cpp | 216 ++++++++++++++++++------ vignettes |only 20 files changed, 653 insertions(+), 116 deletions(-)
Title: Hierarchical Exponential-Family Random Graph Models
Description: Hierarchical exponential-family random graph models with local dependence.
Author: Michael Schweinberger <michael.schweinberger@rice.edu> [aut, cre], Mark S. Handcock <handcock@ucla.edu> [ctb], Pamela Luna <pamela.luna@rice.edu> [ctb]
Maintainer: Michael Schweinberger <michael.schweinberger@rice.edu>
Diff between hergm versions 3.1-1 dated 2018-03-14 and 3.1-2 dated 2018-04-10
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/hergm.R | 2 +- R/hergm.getnetwork.R | 4 ++-- R/hergm.mcmc.R | 13 ++++++++----- R/hergm.mcmc.diagnostics.R | 2 +- R/hergm.postprocess.R | 2 +- R/hergm.preprocess.R | 8 ++++---- R/hergm.simulate.R | 2 +- 9 files changed, 30 insertions(+), 27 deletions(-)
Title: Similarity and Distance Quantification Between Probability
Functions
Description: Computes 46 optimized distance and similarity measures for comparing probability functions. These comparisons between probability functions have their foundations in a broad range of scientific disciplines from mathematics to ecology. The aim of this package is to provide a core framework for clustering, classification, statistical inference, goodness-of-fit, non-parametric statistics, information theory, and machine learning tasks that are based on comparing univariate or multivariate probability functions.
Author: Hajk-Georg Drost [aut, cre] (<https://orcid.org/0000-0002-1567-306X>)
Maintainer: Hajk-Georg Drost <hgd23@cam.ac.uk>
Diff between philentropy versions 0.0.3 dated 2017-05-08 and 0.1.0 dated 2018-04-10
philentropy-0.0.3/philentropy/inst/doc/Distances.R |only philentropy-0.0.3/philentropy/inst/doc/Information_Theory.R |only philentropy-0.1.0/philentropy/DESCRIPTION | 14 philentropy-0.1.0/philentropy/MD5 | 50 philentropy-0.1.0/philentropy/NEWS.md | 13 philentropy-0.1.0/philentropy/R/CE.R | 1 philentropy-0.1.0/philentropy/R/JSD.R | 4 philentropy-0.1.0/philentropy/R/KL.R | 4 philentropy-0.1.0/philentropy/R/RcppExports.R | 126 philentropy-0.1.0/philentropy/R/utils.R | 8 philentropy-0.1.0/philentropy/README.md | 2 philentropy-0.1.0/philentropy/build/vignette.rds |binary philentropy-0.1.0/philentropy/inst/doc/Distances.Rmd | 16 philentropy-0.1.0/philentropy/inst/doc/Distances.html | 12 philentropy-0.1.0/philentropy/inst/doc/Information_Theory.Rmd | 179 philentropy-0.1.0/philentropy/inst/doc/Information_Theory.html | 136 philentropy-0.1.0/philentropy/inst/doc/Introduction.Rmd | 7 philentropy-0.1.0/philentropy/inst/doc/Introduction.html | 8 philentropy-0.1.0/philentropy/inst/include/philentropy_RcppExports.h | 26 philentropy-0.1.0/philentropy/src/InformationTheory.h | 2 philentropy-0.1.0/philentropy/src/RcppExports.cpp | 154 philentropy-0.1.0/philentropy/src/distances.h | 28 philentropy-0.1.0/philentropy/src/philentropy_init.c | 260 philentropy-0.1.0/philentropy/tests/testthat/test-distances.R | 3037 +++++----- philentropy-0.1.0/philentropy/vignettes/Distances.Rmd | 16 philentropy-0.1.0/philentropy/vignettes/Information_Theory.Rmd | 179 philentropy-0.1.0/philentropy/vignettes/Introduction.Rmd | 7 27 files changed, 2545 insertions(+), 1744 deletions(-)
Title: Miscellaneous Functions for the USGS INL Project Office
Description: A collection of functions for creating high-level graphics,
performing raster-based analysis, processing MODFLOW-based models,
subset selection using a genetic algorithm, etc.
Used to support packages and scripts written by researchers at the
United States Geological Survey (USGS)
Idaho National Laboratory (INL) Project Office.
Author: Jason C. Fisher [aut, cre] (<https://orcid.org/0000-0001-9032-8912>)
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between inlmisc versions 0.3.5 dated 2017-10-28 and 0.4.0 dated 2018-04-10
inlmisc-0.3.5/inlmisc/man/AddCertificate.Rd |only inlmisc-0.4.0/inlmisc/DESCRIPTION | 21 +- inlmisc-0.4.0/inlmisc/MD5 | 102 ++++++------ inlmisc-0.4.0/inlmisc/NAMESPACE | 10 - inlmisc-0.4.0/inlmisc/NEWS.md | 40 ++++ inlmisc-0.4.0/inlmisc/R/AddColorKey.R | 82 ++++++--- inlmisc-0.4.0/inlmisc/R/AddGradientLegend.R | 8 inlmisc-0.4.0/inlmisc/R/AddInsetMap.R | 23 +- inlmisc-0.4.0/inlmisc/R/AddPoints.R | 20 +- inlmisc-0.4.0/inlmisc/R/AddScaleBar.R | 12 - inlmisc-0.4.0/inlmisc/R/AddWebMapElements.R |only inlmisc-0.4.0/inlmisc/R/BumpDisconnectCells.R | 14 - inlmisc-0.4.0/inlmisc/R/BumpRiverStage.R | 20 -- inlmisc-0.4.0/inlmisc/R/CreateWebMap.R | 93 ++++------- inlmisc-0.4.0/inlmisc/R/ExportRasterStack.R | 15 - inlmisc-0.4.0/inlmisc/R/ExtractAlongTransect.R | 40 ++-- inlmisc-0.4.0/inlmisc/R/FindOptimalSubset.R | 64 +++++-- inlmisc-0.4.0/inlmisc/R/FormatPval.R | 6 inlmisc-0.4.0/inlmisc/R/GetTolColors.R |only inlmisc-0.4.0/inlmisc/R/Grid2Polygons.R | 39 ++-- inlmisc-0.4.0/inlmisc/R/POSIXct2Character.R | 17 -- inlmisc-0.4.0/inlmisc/R/PlotCrossSection.R | 69 +++----- inlmisc-0.4.0/inlmisc/R/PlotGraph.R | 26 +-- inlmisc-0.4.0/inlmisc/R/PlotMap.R | 175 +++++++++------------ inlmisc-0.4.0/inlmisc/R/PrintTable.R |only inlmisc-0.4.0/inlmisc/R/ReadCodeChunks.R | 10 - inlmisc-0.4.0/inlmisc/R/ReadModflowBinary.R | 5 inlmisc-0.4.0/inlmisc/R/RecreateLibrary.R | 112 ++++--------- inlmisc-0.4.0/inlmisc/R/RmSmallCellChunks.R | 20 -- inlmisc-0.4.0/inlmisc/R/SetPolygons.R | 18 -- inlmisc-0.4.0/inlmisc/R/SummariseBudget.R | 17 +- inlmisc-0.4.0/inlmisc/R/ToScientific.R | 120 ++++++++------ inlmisc-0.4.0/inlmisc/README.md | 26 +-- inlmisc-0.4.0/inlmisc/inst/htmlwidgets |only inlmisc-0.4.0/inlmisc/inst/misc/knitr-markdown.Rmd |only inlmisc-0.4.0/inlmisc/man/AddColorKey.Rd | 48 +++-- inlmisc-0.4.0/inlmisc/man/AddGradientLegend.Rd | 2 inlmisc-0.4.0/inlmisc/man/AddWebMapElements.Rd |only inlmisc-0.4.0/inlmisc/man/BumpRiverStage.Rd | 2 inlmisc-0.4.0/inlmisc/man/CreateWebMap.Rd | 20 +- inlmisc-0.4.0/inlmisc/man/ExportRasterStack.Rd | 2 inlmisc-0.4.0/inlmisc/man/ExtractAlongTransect.Rd | 8 inlmisc-0.4.0/inlmisc/man/FindOptimalSubset.Rd | 12 - inlmisc-0.4.0/inlmisc/man/GetTolColors.Rd |only inlmisc-0.4.0/inlmisc/man/Grid2Polygons.Rd | 2 inlmisc-0.4.0/inlmisc/man/IsPackageInstalled.Rd |only inlmisc-0.4.0/inlmisc/man/POSIXct2Character.Rd | 14 - inlmisc-0.4.0/inlmisc/man/PlotCrossSection.Rd | 5 inlmisc-0.4.0/inlmisc/man/PlotGraph.Rd | 6 inlmisc-0.4.0/inlmisc/man/PlotMap.Rd | 59 +++---- inlmisc-0.4.0/inlmisc/man/PrintTable.Rd |only inlmisc-0.4.0/inlmisc/man/ReadCodeChunks.Rd | 10 - inlmisc-0.4.0/inlmisc/man/RecreateLibrary.Rd | 13 - inlmisc-0.4.0/inlmisc/man/ToScientific.Rd | 33 ++- 54 files changed, 758 insertions(+), 702 deletions(-)
Title: R Interface for US EPA's SWMM
Description: Functions to connect the widely used Storm Water Management Model (SWMM)
of the United States Environmental Protection Agency (US EPA)
<https://www.epa.gov/water-research/storm-water-management-model-swmm> to R with
currently two main goals: (1) Run a SWMM simulation from R and (2) provide fast
access to simulation results, i.e. SWMM's binary '.out'-files. High performance is achieved
with help of Rcpp. Additionally, reading SWMM's '.inp' and '.rpt' files is supported to
glance model structures and to get direct access to simulation summaries.
Author: Dominik Leutnant [aut, cre] (<https://orcid.org/0000-0003-3293-2315>),
Anneke Doering [aut]
Maintainer: Dominik Leutnant <leutnant@fh-muenster.de>
Diff between swmmr versions 0.8.0 dated 2018-03-08 and 0.8.1 dated 2018-04-10
DESCRIPTION | 8 MD5 | 18 NEWS.md | 6 R/read_out_helper.R | 10 inst/doc/How_swmmr_reads_and_writes_files.html | 4 inst/doc/How_to_autocalibrate_a_SWMM_model_with_swmmr.R | 2 inst/doc/How_to_autocalibrate_a_SWMM_model_with_swmmr.Rmd | 2 inst/doc/How_to_autocalibrate_a_SWMM_model_with_swmmr.html | 4 inst/doc/How_to_convert_between_GIS_data_and_SWMM_with_swmmr.html | 197 +++++----- vignettes/How_to_autocalibrate_a_SWMM_model_with_swmmr.Rmd | 2 10 files changed, 130 insertions(+), 123 deletions(-)
Title: Bayesian Optimal INterval (BOIN) Design for Single-Agent and
Drug- Combination Phase I Clinical Trials
Description: The Bayesian optimal interval (BOIN) design is a novel phase I
clinical trial design for finding the maximum tolerated dose (MTD). It can be
used to design both single-agent and drug-combination trials. The BOIN design
is motivated by the top priority and concern of clinicians when testing a new
drug, which is to effectively treat patients and minimize the chance of exposing
them to subtherapeutic or overly toxic doses. The prominent advantage of the
BOIN design is that it achieves simplicity and superior performance at the same
time. The BOIN design is algorithm-based and can be implemented in a simple
way similar to the traditional 3+3 design. The BOIN design yields an average
performance that is comparable to that of the continual reassessment method
(CRM, one of the best model-based designs) in terms of selecting the MTD, but
has a substantially lower risk of assigning patients to subtherapeutic or overly
toxic doses.
Author: Ying Yuan and Suyu Liu
Maintainer: Ying Yuan <yyuan@mdanderson.org>
Diff between BOIN versions 2.6.2 dated 2018-03-27 and 2.6.3 dated 2018-04-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/get.oc.R | 2 +- R/get.oc.comb.R | 6 +++--- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Discriminating Well Surveyed Spatial Units from Exhaustive
Biodiversity Databases
Description: It uses species accumulation curves and diverse estimators to assess, at the same time, the levels of survey coverage in multiple geographic cells of a size defined by the user or polygons. It also enables the geographical depiction of observed species richness, survey effort and completeness values including a background with administrative areas.
Author: Cástor Guisande González and Jorge M. Lobo
Maintainer: Cástor Guisande González <castor@uvigo.es>
Diff between KnowBR versions 1.6 dated 2018-03-12 and 1.7 dated 2018-04-10
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- R/KnowB.R | 9 ++------- inst |only man/KnowBPolygon.Rd | 28 +++++++++++++++++----------- 5 files changed, 26 insertions(+), 24 deletions(-)
Title: Automatic Correlation and Regression Test in a 'data.frame'
Description: Perform correlation and linear regression test
among the numeric fields in a data.frame automatically
and make plots using pairs or lattice::parallelplot.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between mycor versions 0.1 dated 2014-10-02 and 0.1.1 dated 2018-04-10
DESCRIPTION | 14 +++-- MD5 | 33 +++++++------ NAMESPACE | 21 ++++++++ NEWS | 11 +++- R/mycorr1.R | 44 +++++++++--------- README.md | 6 +- build/vignette.rds |binary inst/doc/mycor.R | 14 ++--- man/figures |only man/mycor.Rd | 19 ++++--- man/mylm.Rd | 4 - man/panel.cor.Rd | 4 - man/panel.hist.Rd | 4 - man/plot.mycor.Rd | 17 +------ man/print.mycor.Rd | 4 - man/summary.mycor.Rd | 4 - vignettes/mycor.html | 122 ++++++++++++++++++++++++++++----------------------- 17 files changed, 181 insertions(+), 140 deletions(-)
More information about MarginalMediation at CRAN
Permanent link
Title: Landscape Epidemiology and Evolution
Description: A spatio-temporal stochastic model to assess resistance deployment strategies
against plant pathogens. The model is based on stochastic geometry for describing the
landscape and the resistant hosts, a dispersal kernel for the dissemination of the
pathogen, and a SEIR (Susceptible-Exposed-Infectious-Removed) architecture to simulate
plant response to disease.
Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett,
Peter H Thrall (2018) <doi:10.1101/260836>.
Author: Loup Rimbaud [aut],
Julien Papaix [aut],
Jean-Francois Rey [cre]
Maintainer: Jean-Francois Rey <jean-francois.rey@inra.fr>
Diff between landsepi versions 0.0.3 dated 2018-04-09 and 0.0.4 dated 2018-04-10
DESCRIPTION | 8 ++--- MD5 | 10 +++--- R/landsepi.R | 4 +- configure | 76 +++++++++++++++++++++++++++++++++++++++++------- configure.ac | 53 ++++++++++++++++++++++++++++++++- man/landsepi-package.Rd | 4 +- 6 files changed, 130 insertions(+), 25 deletions(-)
Title: Creates a Model Matrix via Feature Hashing with a Formula
Interface
Description: Feature hashing, also called as the hashing trick, is a method to transform
features of a instance to a vector. Thus, it is a method to transform a real dataset to a matrix.
Without looking up the indices in an associative array,
it applies a hash function to the features and uses their hash values as indices directly.
The method of feature hashing in this package was proposed in Weinberger et al. (2009) <arXiv:0902.2206>.
The hashing algorithm is the murmurhash3 from the 'digest' package.
Please see the README in <https://github.com/wush978/FeatureHashing> for more information.
Author: Wush Wu [aut, cre],
Michael Benesty [aut, ctb]
Maintainer: Wush Wu <wush978@gmail.com>
Diff between FeatureHashing versions 0.9.1.1 dated 2015-10-17 and 0.9.1.3 dated 2018-04-10
FeatureHashing |only 1 file changed
More information about FeatureHashing at CRAN
Permanent link
More information about BreedingSchemeLanguage at CRAN
Permanent link
Title: World Development Indicators (World Bank)
Description: Search, extract and format data from the World Bank's
World Development Indicators.
Author: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between WDI versions 2.4 dated 2013-08-20 and 2.5 dated 2018-04-10
WDI-2.4/WDI/README.md |only WDI-2.5/WDI/DESCRIPTION | 27 +++++++++--------- WDI-2.5/WDI/MD5 | 25 ++++++++-------- WDI-2.5/WDI/NAMESPACE | 3 ++ WDI-2.5/WDI/NEWS | 9 ++++++ WDI-2.5/WDI/R/WDI-package.R | 12 ++++---- WDI-2.5/WDI/R/WDI.R | 60 ++++++++++++++++++++++++---------------- WDI-2.5/WDI/R/WDI_data.R | 2 - WDI-2.5/WDI/data/WDI_data.RData |binary WDI-2.5/WDI/man/WDI-package.Rd | 25 ++++++++-------- WDI-2.5/WDI/man/WDI.Rd | 39 ++++++++++++-------------- WDI-2.5/WDI/man/WDI_data.Rd | 43 +++++++++++++++++----------- WDI-2.5/WDI/man/WDIcache.Rd | 25 ++++++---------- WDI-2.5/WDI/man/WDIsearch.Rd | 33 ++++++++++------------ 14 files changed, 162 insertions(+), 141 deletions(-)
Title: Understanding Nonlinear Mixed Effects Modeling for Population
Pharmacokinetics
Description: This shows how NONMEM(R) <http://www.iconplc.com/innovation/nonmem/> software works. NONMEM's classical estimation methods like 'First Order(FO) approximation', 'First Order Conditional Estimation(FOCE)', and 'Laplacian approximation' are explained.
Author: Kyun-Seop Bae
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between nmw versions 0.1.2 dated 2017-10-20 and 0.1.4 dated 2018-04-10
DESCRIPTION | 10 MD5 | 27 - R/InitStep.R | 40 +- R/Objs.R | 6 R/TabStep.R |only inst/NEWS.Rd | 16 inst/doc/THEO-FOCEI_sdtab.txt |only inst/doc/THEO-FO_sdtab.txt |only inst/doc/THEO-LAPLI_sdtab.txt |only inst/doc/nmw-manual.pdf |binary inst/doc/nmw-vignette.R | 57 +-- inst/doc/nmw-vignette.Rout.txt | 765 ++++++++++++++++++++++++++++++----------- man/CovStep.Rd | 6 man/EstStep.Rd | 4 man/InitStep.Rd | 37 - man/TabStep.Rd |only man/nmw-package.Rd | 45 +- 17 files changed, 723 insertions(+), 290 deletions(-)
Title: Noncompartmental Analysis for Pharmacokinetic Report
Description: Conduct a noncompartmental analysis as closely as possible to the most widely used commercial software for pharmacokinetic analysis, i.e. 'Phoenix(R) WinNonlin(R)' <https://www.certara.com/software/pkpd-modeling-and-simulation/phoenix-winnonlin/>.
Some features are
1) CDISC SDTM terms
2) Automatic slope selection with the same criterion of WinNonlin(R)
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
5) Produce pdf, rtf, text report files.
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between ncar versions 0.3.7 dated 2017-08-15 and 0.3.8 dated 2018-04-10
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- inst/NEWS.Rd | 5 +++++ inst/doc/ncar-manual.pdf |binary 4 files changed, 13 insertions(+), 8 deletions(-)
Title: Physical and Physiological Ecosystem Properties from Eddy
Covariance Data
Description: Calculation of physical (e.g. aerodynamic conductance, surface temperature),
and physiological (e.g. canopy conductance, water-use efficiency) ecosystem properties
from eddy covariance data and accompanying meteorological measurements. Calculations
assume the land surface to behave like a 'big-leaf' and return bulk ecosystem/canopy variables.
Author: Juergen Knauer [aut, cre],
Soenke Zaehle [ctb],
Tarek El-Madany [ctb],
Mirco Migliavacca [ctb]
Maintainer: Juergen Knauer <jknauer@bgc-jena.mpg.de>
Diff between bigleaf versions 0.3.0 dated 2018-01-25 and 0.5.2 dated 2018-04-10
DESCRIPTION | 11 +- MD5 | 101 ++++++++++---------- NEWS |only R/aerodynamic_conductance.r | 159 +++++++++++++++++++------------- R/bigleaf_constants.r | 105 ++++++++++++--------- R/bigleaf_physiology.r | 124 +++++++++++++------------ R/boundary_layer_conductance.r | 193 +++++++++++++++++++++++++--------------- R/check_input.r | 4 R/datasets_description.r | 180 +++++++++++++++++++------------------ R/decoupling.r | 12 +- R/evapotranspiration.r | 68 ++++++++------ R/meteorological_variables.r | 94 +++++++++++++------ R/stability_correction.r | 12 +- R/surface_conditions.r | 77 +++++++++++---- R/surface_conductance.r | 12 +- R/surface_roughness.r | 89 ++++++++++++------ R/unit_conversions.r | 31 +++--- data/AT_Neu_Jul_2010.rda |binary data/DE_Tha_Jun_2014.rda |binary data/FR_Pue_May_2012.rda |binary man/AT_Neu_Jul_2010.Rd | 61 ++++++------ man/DE_Tha_Jun_2014.Rd | 62 ++++++------ man/Esat.slope.Rd | 22 ++-- man/FR_Pue_May_2012.Rd | 57 ++++++----- man/Gb.Choudhury.Rd | 42 ++++---- man/Gb.Su.Rd | 38 ++++--- man/Gb.Thom.Rd | 45 +++++---- man/Monin.Obukhov.length.Rd | 9 + man/VPD.to.rH.Rd | 22 +++- man/aerodynamic.conductance.Rd | 95 +++++++++++-------- man/bigleaf.constants.Rd | 85 ++++++++++++----- man/decoupling.Rd | 5 + man/dew.point.Rd | 7 + man/dew.point.solver.Rd | 8 + man/equilibrium.imposed.ET.Rd | 9 + man/intercellular.CO2.Rd | 27 +---- man/latent.heat.vaporization.Rd | 2 man/light.response.Rd | 27 +++-- man/photosynthetic.capacity.Rd | 3 man/potential.ET.Rd | 9 + man/psychrometric.constant.Rd | 4 man/radiometric.surface.temp.Rd | 30 ++++-- man/reference.ET.Rd | 36 ++++--- man/roughness.parameters.Rd | 6 - man/stability.parameter.Rd | 3 man/stomatal.slope.Rd | 9 + man/surface.conditions.Rd | 16 ++- man/surface.conductance.Rd | 5 + man/virtual.temp.Rd | 7 + man/wetbulb.solver.Rd | 8 + man/wetbulb.temp.Rd | 5 + man/wind.profile.Rd | 32 ++++-- 52 files changed, 1251 insertions(+), 817 deletions(-)
Title: Semantic UI Support for Shiny
Description: Creating a great user interface for your Shiny apps
can be a hassle, especially if you want to work purely in R
and don't want to use, for instance HTML templates. This
package adds support for a powerful UI library Semantic UI -
<http://semantic-ui.com/>. It also supports universal UI input
binding that works with various DOM elements.
Author: Filip Stachura [aut, cre]
Maintainer: Filip Stachura <filip@appsilondatascience.com>
Diff between shiny.semantic versions 0.1.1 dated 2017-05-29 and 0.1.2 dated 2018-04-10
shiny.semantic-0.1.1/shiny.semantic/inst/semantic |only shiny.semantic-0.1.1/shiny.semantic/man/getDeps.Rd |only shiny.semantic-0.1.2/shiny.semantic/DESCRIPTION | 9 shiny.semantic-0.1.2/shiny.semantic/MD5 | 237 +--- shiny.semantic-0.1.2/shiny.semantic/NAMESPACE | 28 shiny.semantic-0.1.2/shiny.semantic/R/constants.R |only shiny.semantic-0.1.2/shiny.semantic/R/dsl.R | 492 +++++++++- shiny.semantic-0.1.2/shiny.semantic/R/search_field.R |only shiny.semantic-0.1.2/shiny.semantic/R/semanticPage.R | 101 +- shiny.semantic-0.1.2/shiny.semantic/R/semantic_search.R |only shiny.semantic-0.1.2/shiny.semantic/R/shiny.R | 31 shiny.semantic-0.1.2/shiny.semantic/R/slider_input.R |only shiny.semantic-0.1.2/shiny.semantic/R/uirender.R | 22 shiny.semantic-0.1.2/shiny.semantic/R/utils.R |only shiny.semantic-0.1.2/shiny.semantic/README.md | 94 + shiny.semantic-0.1.2/shiny.semantic/inst/assets/README_files/figure-markdown_githubunnamed-chunk-6-1.png |binary shiny.semantic-0.1.2/shiny.semantic/inst/assets/README_files/figure-markdown_githubunnamed-chunk-7-1.png |binary shiny.semantic-0.1.2/shiny.semantic/inst/assets/README_files/figure-markdown_githubunnamed-chunk-9-1.png |binary shiny.semantic-0.1.2/shiny.semantic/inst/prepare_package_cran.sh | 1 shiny.semantic-0.1.2/shiny.semantic/inst/semantic-range |only shiny.semantic-0.1.2/shiny.semantic/inst/www/shiny-custom-input.js | 2 shiny.semantic-0.1.2/shiny.semantic/man/CDN_PATH.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/SUPPORTED_THEMES.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/check_proper_color.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/check_semantic_theme.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/define_selection_type.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/dropdown.Rd | 7 shiny.semantic-0.1.2/shiny.semantic/man/get_default_semantic_js.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/get_default_semantic_theme.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/get_dependencies.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/grapes-colon-colon-colon-grapes.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/label.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/list_element.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/menu_divider.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/menu_header.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/menu_item.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/parse_val.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/register_search.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/search_field.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/search_selection_api.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/search_selection_choices.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/semanticPage.Rd | 7 shiny.semantic-0.1.2/shiny.semantic/man/semantic_palette.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/shiny_input.Rd | 9 shiny.semantic-0.1.2/shiny.semantic/man/shiny_text_input.Rd | 10 shiny.semantic-0.1.2/shiny.semantic/man/slider_input.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/tabset.Rd | 9 shiny.semantic-0.1.2/shiny.semantic/man/uicard.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/uicards.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/uidropdown.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/uifield.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/uifields.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/uiform.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/uiheader.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/uiicon.Rd | 6 shiny.semantic-0.1.2/shiny.semantic/man/uilabel.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/uilist.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/uimenu.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/uimessage.Rd |only shiny.semantic-0.1.2/shiny.semantic/man/uirender.Rd | 14 shiny.semantic-0.1.2/shiny.semantic/man/uisegment.Rd |only shiny.semantic-0.1.2/shiny.semantic/tests |only 62 files changed, 779 insertions(+), 300 deletions(-)
More information about shiny.semantic at CRAN
Permanent link
Title: Privacy Preserving Record Linkage
Description: A toolbox for deterministic, probabilistic and privacy-preserving record linkage techniques. Combines the functionality of the 'Merge ToolBox' (<http://record-linkage.de>) with current privacy-preserving techniques.
Author: Rainer Schnell [aut, cph],
Dorothea Rukasz [aut, cre],
Christian Borgs [ctb],
Stefan Brumme [ctb] (HMAC, SHA256),
William B. Brogden [ctb] (Metaphone),
Tim O'Brien [ctb] (Metaphone),
Stephen Lacy [ctb] (Double Metaphone),
Apache Software Foundation [cph]
Maintainer: Dorothea Rukasz <mitarbeiter.schnell@uni-due.de>
Diff between PPRL versions 0.3.4 dated 2018-03-20 and 0.3.5 dated 2018-04-10
DESCRIPTION | 8 - MD5 | 10 +- R/RcppExports.R | 218 ++++++++++++++++++++++---------------------- src/CreateCLKBigramSeed.cpp | 2 src/MTB_Metaphone.cpp | 7 - src/ThreadPool.h | 5 - 6 files changed, 123 insertions(+), 127 deletions(-)
Title: Deciphering Central Informative Nodes in Network Analysis
Description: Functions for computing, comparing and demonstrating top informative centrality measures within a network.
Author: Minoo Ashtiani,
Mohieddin Jafari
Maintainer: Minoo Ashtiani <m_ashtiani@pasteur.ac.ir>
Diff between CINNA versions 1.1.3 dated 2018-01-03 and 1.1.4 dated 2018-04-10
DESCRIPTION | 8 MD5 | 18 - NAMESPACE | 2 R/CINNA.R | 35 ++ build/vignette.rds |binary inst/doc/CINNA.R | 4 inst/doc/CINNA.Rmd | 80 +++--- inst/doc/CINNA.html | 504 +++++++++++++++++++++++++++++------------- man/calculate_centralities.Rd | 2 vignettes/CINNA.Rmd | 80 +++--- 10 files changed, 478 insertions(+), 255 deletions(-)
Title: Variable Selection Using Random Forests
Description: Three steps variable selection procedure based on random forests.
Initially developed to handle high dimensional data (for which number of
variables largely exceeds number of observations), the package is very
versatile and can treat most dimensions of data, for regression and
supervised classification problems. First step is dedicated to eliminate
irrelevant variables from the dataset. Second step aims to select all
variables related to the response for interpretation purpose. Third step
refines the selection by eliminating redundancy in the set of variables
selected by the second step, for prediction purpose.
Genuer, R. and Poggi, J.M. and Tuleau-Malot, C. (2015)
<https://journal.r-project.org/archive/2015-2/genuer-poggi-tuleaumalot.pdf>.
Author: Robin Genuer [aut, cre],
Jean-Michel Poggi [aut],
Christine Tuleau-Malot [aut]
Maintainer: Robin Genuer <Robin.Genuer@u-bordeaux.fr>
Diff between VSURF versions 1.0.3 dated 2016-04-26 and 1.0.4 dated 2018-04-10
DESCRIPTION | 17 +++++----- MD5 | 52 +++++++++++++++++-------------- NEWS | 6 +++ R/PM10.R |only R/VSURF.R | 14 ++++---- R/VSURF_interp.R | 2 - R/VSURF_pred.R | 4 +- R/VSURF_thres.R | 4 +- R/plot.VSURF.R | 2 - R/toys.R | 23 +++++++------ data/ail.rda |only data/gcm.rda |only data/gui.rda |only data/hri.rda |only data/jus.rda |only data/rep.rda |only man/PM10.Rd |only man/VSURF.Rd | 21 +++++------- man/VSURF_interp.Rd | 9 ++--- man/VSURF_pred.Rd | 11 ++---- man/VSURF_thres.Rd | 11 ++---- man/plot.VSURF.Rd | 11 ++---- man/predict.VSURF.Rd | 7 +--- man/print.VSURF.Rd | 7 +--- man/summary.VSURF.Rd | 7 +--- man/toys.Rd | 24 +++++++------- man/tune.Rd | 13 +++---- tests/testthat/case_win32_test_iris.R | 4 ++ tests/testthat/case_win32b_test_orange.R | 4 ++ tests/testthat/test_iris.R | 4 ++ tests/testthat/test_orange.R | 4 ++ 31 files changed, 145 insertions(+), 116 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb],
John Clouse [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 1.11-1 dated 2018-02-13 and 1.11-2 dated 2018-04-10
DESCRIPTION | 8 ++--- MD5 | 69 ++++++++++++++++++++++---------------------- NEWS | 3 + R/pkg.R | 6 ++- R/qtm.R | 5 +-- R/tm_add_legend.R | 2 - R/tm_layers.R | 63 +++++++++++++++++++++------------------- R/tm_layout.R | 21 +++++++------ R/tm_misc_elements.R | 16 +++++----- R/tm_shape.R | 3 + R/tm_view.R | 1 R/tmap_arrange.R | 4 +- R/tmap_mode.R | 7 ++-- build/vignette.rds |binary inst/CITATION |only inst/doc/tmap-nutshell.html | 4 +- man/Shapes.Rd | 2 - man/plus-.tmap.Rd | 3 + man/qtm.Rd | 7 +++- man/tm_add_legend.Rd | 2 - man/tm_facets.Rd | 7 +++- man/tm_grid.Rd | 8 ++--- man/tm_layout.Rd | 23 ++++++++------ man/tm_lines.Rd | 13 +++++--- man/tm_polygons.Rd | 13 +++++--- man/tm_raster.Rd | 13 +++++--- man/tm_scale_bar.Rd | 2 - man/tm_shape.Rd | 5 ++- man/tm_symbols.Rd | 16 +++++----- man/tm_text.Rd | 17 ++++++---- man/tm_view.Rd | 3 + man/tmap-element.Rd | 3 + man/tmap-package.Rd | 5 ++- man/tmap_arrange.Rd | 4 +- man/tmap_mode.Rd | 7 +++- man/tmap_style.Rd | 2 - 36 files changed, 213 insertions(+), 154 deletions(-)
Title: Multivariate Sensitivity Analysis
Description: Functions to perform sensitivity analysis on a model with multivariate output.
Author: Caroline Bidot <caroline.bidot@inra.fr>, Matieyendou Lamboni <matieyendou.lamboni@gmail.com>, Hervé Monod <herve.monod@inra.fr>
Maintainer: Hervé Monod <herve.monod@inra.fr>
Diff between multisensi versions 2.1 dated 2017-07-12 and 2.1-1 dated 2018-04-10
DESCRIPTION | 10 - MD5 | 73 +++++----- NEWS | 6 R/analysis.anoasg.r | 264 +++++++++++++++++++++++++++++++++++++- R/analysis.sensitivity.r | 2 R/basis.ACP.r | 2 R/basis.bsplines.r | 2 R/basis.mine.r | 2 R/basis.osplines.r | 2 R/basis.poly.r | 2 R/biomasse.r | 2 R/dynsi.r | 2 R/fctspline.jbrf.r | 2 R/graph.bar.r | 2 R/graph.pc.r | 2 R/grpe.gsi.r | 2 R/gsi.r | 2 R/multisensi.r | 2 R/multivar.r | 2 R/planfact.as.r | 2 R/planfact.r | 2 R/plot.dynsi.r | 2 R/plot.gsi.r | 2 R/predict.gsi.r | 2 R/print.dynsi.r | 2 R/print.gsi.r | 2 R/quality.r | 2 R/simulmodel.r | 2 R/summary.dynsi.r | 2 R/summary.gsi.r | 2 R/yapprox.r | 2 R/zzz.r |only build/vignette.rds |binary inst/doc/multisensi-manual.pdf |binary inst/doc/multisensi-vignette.R | 4 inst/doc/multisensi-vignette.pdf |binary inst/doc/multisensi-vignette.rnw | 6 vignettes/multisensi-vignette.rnw | 6 38 files changed, 346 insertions(+), 77 deletions(-)
Title: Thematic Map Tools
Description: Set of tools for reading and processing spatial data. The aim is to supply the workflow to create thematic maps. This package also facilitates 'tmap', the package for visualizing thematic maps.
Author: Martijn Tennekes [aut, cre]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmaptools versions 1.2-3 dated 2018-02-13 and 1.2-4 dated 2018-04-10
DESCRIPTION | 8 +-- MD5 | 109 ++++++++++++++++++++++----------------------- NEWS | 3 + R/aggregate_map.R | 3 - R/append_data.R | 1 R/approx_areas.R | 3 - R/approx_distances.R | 9 ++- R/bb.R | 3 - R/bb_sp.R | 2 R/calc_densities.R | 5 +- R/crop_shape.R | 1 R/geocode_OSM.R | 101 +++++++++++++++++++++-------------------- R/get_asp_ratio.R | 3 - R/get_brewer_pal.R | 3 - R/get_proj4_code.R | 1 R/map_coloring.R | 1 R/palette_explorer.R | 3 - R/pkg.R | 1 R/projection_units.R | 2 R/read_GPX.R | 5 +- R/read_osm.R | 3 - R/read_shape.R | 1 R/sample_dots.R | 7 +- R/set_projection.R | 1 R/simplify_shape.R | 3 - R/smooth_map.R | 6 +- R/smooth_raster_cover.R | 39 ++++++++-------- R/to_raster.R | 3 - inst |only man/aggregate_map.Rd | 5 +- man/append_data.Rd | 3 + man/approx_areas.Rd | 5 +- man/approx_distances.Rd | 11 ++-- man/bb.Rd | 5 +- man/bb_sp.Rd | 2 man/calc_densities.Rd | 7 ++ man/crop_shape.Rd | 3 + man/geocode_OSM.Rd | 3 + man/get_asp_ratio.Rd | 5 +- man/get_brewer_pal.Rd | 5 +- man/get_proj4.Rd | 3 + man/map_coloring.Rd | 3 + man/palette_explorer.Rd | 4 + man/points_to_raster.Rd | 3 + man/poly_to_raster.Rd | 2 man/projection_units.Rd | 2 man/read_GPX.Rd | 7 ++ man/read_osm.Rd | 5 +- man/read_shape.Rd | 3 + man/rev_geocode_OSM.Rd | 2 man/sample_dots.Rd | 9 ++- man/set_projection.Rd | 3 + man/simplify_shape.Rd | 5 +- man/smooth_map.Rd | 7 ++ man/smooth_raster_cover.Rd | 7 ++ man/tmaptools-package.Rd | 3 + 56 files changed, 273 insertions(+), 179 deletions(-)
Title: Interpretable Machine Learning
Description: Interpretability methods to analyze the behavior and predictions of
any machine learning model.
Implemented methods are:
Feature importance described by Fisher et al. (2018) <arXiv:1801.01489>,
partial dependence plots described by Friedman (2001) <http://www.jstor.org/stable/2699986>,
individual conditional expectation ('ice') plots described by Goldstein et al. (2013) <doi:10.1080/10618600.2014.907095>,
local models (variant of 'lime') described by Ribeiro et. al (2016) <arXiv:1602.04938>,
the Shapley Value described by Strumbelj et. al (2014) <doi:10.1007/s10115-013-0679-x> and
tree surrogate models.
Author: Christoph Molnar [aut, cre]
Maintainer: Christoph Molnar <christoph.molnar@gmail.com>
Diff between iml versions 0.2.1 dated 2018-03-13 and 0.3.0 dated 2018-04-10
iml-0.2.1/iml/tests/testthat/test-Ice.R |only iml-0.2.1/iml/tests/testthat/test-PartialDependence.R |only iml-0.3.0/iml/DESCRIPTION | 15 - iml-0.3.0/iml/MD5 | 59 +++---- iml-0.3.0/iml/NAMESPACE | 13 - iml-0.3.0/iml/NEWS.md | 7 iml-0.3.0/iml/R/Data.R | 10 - iml-0.3.0/iml/R/FeatureImp.R | 40 ++-- iml-0.3.0/iml/R/Ice.R | 91 +--------- iml-0.3.0/iml/R/InterpretationMethod.R | 2 iml-0.3.0/iml/R/LocalModel.R | 80 +++++---- iml-0.3.0/iml/R/Partial.R |only iml-0.3.0/iml/R/PartialDependence.R | 149 +----------------- iml-0.3.0/iml/R/Predictor.R | 20 +- iml-0.3.0/iml/R/Shapley.R | 45 ++--- iml-0.3.0/iml/R/TreeSurrogate.R | 17 +- iml-0.3.0/iml/R/utils.R | 5 iml-0.3.0/iml/man/FeatureImp.Rd | 15 - iml-0.3.0/iml/man/Ice.Rd | 11 - iml-0.3.0/iml/man/LocalModel.Rd | 30 ++- iml-0.3.0/iml/man/Partial.Rd |only iml-0.3.0/iml/man/PartialDependence.Rd | 3 iml-0.3.0/iml/man/Predictor.Rd | 20 +- iml-0.3.0/iml/man/Shapley.Rd | 22 +- iml-0.3.0/iml/man/TreeSurrogate.Rd | 17 +- iml-0.3.0/iml/man/plot.Ice.Rd | 4 iml-0.3.0/iml/man/plot.Partial.Rd |only iml-0.3.0/iml/man/plot.PartialDependence.Rd | 4 iml-0.3.0/iml/tests/testthat/Rplots.pdf |only iml-0.3.0/iml/tests/testthat/helper-predictor.R | 11 + iml-0.3.0/iml/tests/testthat/test-Data.R | 2 iml-0.3.0/iml/tests/testthat/test-LocalModel.R | 11 + iml-0.3.0/iml/tests/testthat/test-Partial.R |only iml-0.3.0/iml/tests/testthat/test-Predictor.R | 2 34 files changed, 297 insertions(+), 408 deletions(-)
Title: Fit a Generalized Linear Mixed Model
Description: Conduct inference about generalized linear mixed models, with a
choice about which method to use to approximate the likelihood. In addition
to the Laplace and adaptive Gaussian quadrature approximations, which are
borrowed from 'lme4', the likelihood may be approximated by the sequential
reduction approximation, or an importance sampling approximation. These
methods provide an accurate approximation to the likelihood in some
situations where it is not possible to use adaptive Gaussian quadrature.
Author: Helen Ogden [aut, cre]
Maintainer: Helen Ogden <heogden12@gmail.com>
Diff between glmmsr versions 0.2.1 dated 2018-01-09 and 0.2.2 dated 2018-04-10
DESCRIPTION | 8 +++--- MD5 | 30 +++++++++++++------------ NAMESPACE | 1 R/control.R | 42 ++++++++++++++++++++++++------------ R/fit.R | 6 +++-- R/loglikelihood.R | 11 +++++---- R/model_frames.R | 19 +++++++++------- R/subformula.R | 12 ++++++---- inst/doc/glmmsr-vignette.pdf |binary man/find_lfun_glmm.Rd | 6 ++++- man/find_modfr_glmm.Rd | 6 ++++- man/glmm.Rd | 5 +++- man/set_lme4_control.Rd |only tests/testthat/test_laplace.R | 2 - tests/testthat/test_lme4_control.R |only tests/testthat/test_loglikelihood.R | 16 ++++++++++++- tests/testthat/test_model_frames.R | 12 ++++++---- 17 files changed, 116 insertions(+), 60 deletions(-)
Title: Mathematical Modeling of Infectious Disease Dynamics
Description: Tools for simulating mathematical models of infectious disease dynamics.
Epidemic model classes include deterministic compartmental models, stochastic
agent-based models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features
an easy API for extending these templates to address novel scientific research aims.
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Emily Beylerian [ctb],
Skye Bender-deMoll [ctb],
Kevin Weiss [ctb]
Maintainer: Samuel Jenness <samuel.m.jenness@emory.edu>
Diff between EpiModel versions 1.6.1 dated 2018-01-25 and 1.6.5 dated 2018-04-10
EpiModel-1.6.1/EpiModel/NEWS |only EpiModel-1.6.5/EpiModel/DESCRIPTION | 16 EpiModel-1.6.5/EpiModel/MD5 | 53 +- EpiModel-1.6.5/EpiModel/NEWS.md |only EpiModel-1.6.5/EpiModel/R/EpiModel-package.r | 25 - EpiModel-1.6.5/EpiModel/R/netdx.R | 10 EpiModel-1.6.5/EpiModel/R/netest.R | 6 EpiModel-1.6.5/EpiModel/R/netsim.R | 5 EpiModel-1.6.5/EpiModel/R/plot.R | 1 EpiModel-1.6.5/EpiModel/R/shiny.R | 9 EpiModel-1.6.5/EpiModel/R/utils.R | 8 EpiModel-1.6.5/EpiModel/build/vignette.rds |binary EpiModel-1.6.5/EpiModel/inst/CITATION |only EpiModel-1.6.5/EpiModel/inst/EpiModelJSS.R | 174 +++----- EpiModel-1.6.5/EpiModel/inst/doc/Intro.Rmd | 13 EpiModel-1.6.5/EpiModel/inst/doc/Intro.html | 353 ++++++++++++++--- EpiModel-1.6.5/EpiModel/man/EpiModel-package.Rd | 22 - EpiModel-1.6.5/EpiModel/man/epiweb.Rd | 9 EpiModel-1.6.5/EpiModel/man/geom_bands.Rd | 1 EpiModel-1.6.5/EpiModel/man/netdx.Rd | 9 EpiModel-1.6.5/EpiModel/man/netest.Rd | 6 EpiModel-1.6.5/EpiModel/man/netsim.Rd | 5 EpiModel-1.6.5/EpiModel/tests/testthat/test-dcm-long.R | 108 ++--- EpiModel-1.6.5/EpiModel/tests/testthat/test-icm-long.R | 50 +- EpiModel-1.6.5/EpiModel/tests/testthat/test-mutate.R | 17 EpiModel-1.6.5/EpiModel/tests/testthat/test-net-long.R | 86 ++-- EpiModel-1.6.5/EpiModel/tests/testthat/test-netattr.R | 2 EpiModel-1.6.5/EpiModel/tests/testthat/test-netdx.R | 28 - EpiModel-1.6.5/EpiModel/vignettes/Intro.Rmd | 13 29 files changed, 668 insertions(+), 361 deletions(-)
Title: Dendrograms for Evolutionary Analysis
Description: Contains functions for importing and exporting 'dendrogram'
objects in parenthetic text format, as well as several
functions for command-line tree manipulation.
Author: Shaun Wilkinson [aut, cre]
Maintainer: Shaun Wilkinson <shaunpwilkinson@gmail.com>
Diff between phylogram versions 1.0.1 dated 2017-06-14 and 2.0.0 dated 2018-04-10
phylogram-1.0.1/phylogram/R/RcppExports.R |only phylogram-1.0.1/phylogram/R/distance.R |only phylogram-1.0.1/phylogram/R/internals.R |only phylogram-1.0.1/phylogram/R/print.R |only phylogram-1.0.1/phylogram/R/topdown.R |only phylogram-1.0.1/phylogram/man/kcount.Rd |only phylogram-1.0.1/phylogram/man/kdistance.Rd |only phylogram-1.0.1/phylogram/man/mbed.Rd |only phylogram-1.0.1/phylogram/man/print.mbed.Rd |only phylogram-1.0.1/phylogram/man/topdown.Rd |only phylogram-1.0.1/phylogram/src |only phylogram-1.0.1/phylogram/tests/testthat/test_distance.R |only phylogram-2.0.0/phylogram/DESCRIPTION | 21 - phylogram-2.0.0/phylogram/MD5 | 44 -- phylogram-2.0.0/phylogram/NAMESPACE | 18 phylogram-2.0.0/phylogram/R/conversion.R |only phylogram-2.0.0/phylogram/R/phylogram.R | 16 phylogram-2.0.0/phylogram/R/write.R | 10 phylogram-2.0.0/phylogram/README.md | 73 +-- phylogram-2.0.0/phylogram/inst/CITATION | 2 phylogram-2.0.0/phylogram/inst/doc/phylogram-vignette.R | 69 --- phylogram-2.0.0/phylogram/inst/doc/phylogram-vignette.Rmd | 270 ++----------- phylogram-2.0.0/phylogram/inst/doc/phylogram-vignette.html | 204 ++------- phylogram-2.0.0/phylogram/man/conversion.Rd |only phylogram-2.0.0/phylogram/man/phylogram.Rd | 18 phylogram-2.0.0/phylogram/man/write.dendrogram.Rd | 10 phylogram-2.0.0/phylogram/vignettes/bioinformatics.csl |only phylogram-2.0.0/phylogram/vignettes/phylogram-vignette.Rmd | 270 ++----------- phylogram-2.0.0/phylogram/vignettes/phylogram.bib | 213 +++------- 29 files changed, 282 insertions(+), 956 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-06 0.1.1
2018-03-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-28 1.8.20
2017-11-28 1.8.19
2015-07-22 1.8.18
2015-03-27 1.8.17
2014-12-17 1.8.15
2014-04-25 1.8.14
2014-04-24 1.8.13
2013-01-11 1.8.12
2012-08-04 1.8.11
2012-04-10 1.8.10
2012-02-28 1.8.9
2011-09-09 1.8.7
2011-04-27 1.8.6
2011-04-24 1.8.5
2011-03-19 1.8.4
2009-05-04 1.8.3
2009-02-15 1.8.2
2009-02-12 1.8.1
2008-10-23 1.8.0
2008-10-07 1.7.3
2008-07-29 1.7.2
2007-12-14 1.7.1
2007-09-01 1.7
2007-08-25 1.6-2
2007-05-29 1.6-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-17 0.3.0
Title: Moran's Eigenvector-Based Spatial Regression Models
Description: Functions for estimating fixed and random effects
eigenvector spatial filtering models.
For details see Murakami (2018) <arXiv:1703.04467>.
Author: Daisuke Murakami
Maintainer: Daisuke Murakami <dmuraka@ism.ac.jp>
Diff between spmoran versions 0.1.2 dated 2017-09-15 and 0.1.3 dated 2018-04-10
spmoran-0.1.2/spmoran/inst/doc/vignette.pdf |only spmoran-0.1.2/spmoran/inst/doc/vignette.pdf.asis |only spmoran-0.1.2/spmoran/vignettes/vignette.pdf.asis |only spmoran-0.1.3/spmoran/DESCRIPTION | 9 spmoran-0.1.3/spmoran/MD5 | 40 - spmoran-0.1.3/spmoran/NAMESPACE | 24 spmoran-0.1.3/spmoran/R/esf.R | 359 +++++----- spmoran-0.1.3/spmoran/R/meigen.R | 79 +- spmoran-0.1.3/spmoran/R/meigen0.R |only spmoran-0.1.3/spmoran/R/meigen_f.R | 86 +- spmoran-0.1.3/spmoran/R/predict0.R |only spmoran-0.1.3/spmoran/R/predict0_vc.R |only spmoran-0.1.3/spmoran/R/resf.R | 40 - spmoran-0.1.3/spmoran/R/resf_qr.R | 6 spmoran-0.1.3/spmoran/R/resf_vc.R | 717 ++++++++++++++------- spmoran-0.1.3/spmoran/build/vignette.rds |binary spmoran-0.1.3/spmoran/inst/doc/vignettes.pdf |only spmoran-0.1.3/spmoran/inst/doc/vignettes.pdf.asis |only spmoran-0.1.3/spmoran/man/esf.Rd | 122 +-- spmoran-0.1.3/spmoran/man/meigen.Rd | 81 +- spmoran-0.1.3/spmoran/man/meigen0.Rd |only spmoran-0.1.3/spmoran/man/meigen_f.Rd | 71 +- spmoran-0.1.3/spmoran/man/predict0.Rd |only spmoran-0.1.3/spmoran/man/predict0_vc.Rd |only spmoran-0.1.3/spmoran/man/resf.Rd | 7 spmoran-0.1.3/spmoran/man/resf_vc.Rd | 143 ++-- spmoran-0.1.3/spmoran/vignettes/vignettes.pdf.asis |only 27 files changed, 1071 insertions(+), 713 deletions(-)
Title: Data Frames in R for Make
Description: An R-focused pipeline toolkit
for reproducible code and high-performance computing.
Author: William Michael Landau [aut, cre],
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 5.1.0 dated 2018-03-22 and 5.1.2 dated 2018-04-10
DESCRIPTION | 16 +- MD5 | 116 ++++++++--------- NAMESPACE | 10 + R/Makefile.R | 4 R/cache.R | 2 R/commands.R | 4 R/config.R | 17 ++ R/console.R | 2 R/dependencies.R | 58 +++++++- R/deprecate.R | 2 R/distributed.R | 24 +-- R/future_lapply.R | 4 R/make.R | 39 +++++ R/package.R | 5 R/sanitize.R | 17 +- R/test_scenarios.R | 4 R/triggers.R | 11 + R/utils.R | 4 R/workplan.R | 62 ++++++++- build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/best-practices.Rmd | 7 - inst/doc/best-practices.html | 14 +- inst/doc/caution.R | 21 +++ inst/doc/caution.Rmd | 39 +++++ inst/doc/caution.html | 42 +++++- inst/doc/debug.html | 98 +++++++------- inst/doc/drake.html | 62 ++++----- inst/doc/example-basic.html | 237 +++++++++++++++++------------------ inst/doc/example-gsp.html | 6 inst/doc/example-packages.R | 16 +- inst/doc/example-packages.Rmd | 26 +-- inst/doc/example-packages.html | 97 ++++++-------- inst/doc/faq.Rmd | 2 inst/doc/faq.html | 2 inst/doc/storage.html | 10 - inst/doc/timing.html | 124 +++++++++--------- inst/examples/packages/R/plan.R | 24 ++- man/bind_plans.Rd |only man/deps.Rd | 15 +- man/drake_config.Rd | 14 +- man/drake_plan.Rd | 11 + man/make.Rd | 13 + man/make_session.Rd |only tests/scenarios/all.R | 8 + tests/testthat/test-Makefile.R | 3 tests/testthat/test-custom-caches.R | 4 tests/testthat/test-dependencies.R | 7 + tests/testthat/test-edge-cases.R | 2 tests/testthat/test-future.R | 8 + tests/testthat/test-other-features.R | 31 +++- tests/testthat/test-testing.R | 6 tests/testthat/test-tidy-eval.R | 12 + tests/testthat/test-time.R | 12 - tests/testthat/test-triggers.R | 6 tests/testthat/test-workflow-plan.R | 46 ++++++ vignettes/best-practices.Rmd | 7 - vignettes/caution.Rmd | 39 +++++ vignettes/example-packages.Rmd | 26 +-- vignettes/faq.Rmd | 2 60 files changed, 973 insertions(+), 528 deletions(-)