Title: Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
Description: Create and customize interactive maps using the 'Leaflet'
JavaScript library and the 'htmlwidgets' package. These maps can be used
directly from the R console, from 'RStudio', in Shiny applications and R Markdown
documents.
Author: Joe Cheng [aut, cre],
Bhaskar Karambelkar [aut],
Yihui Xie [aut],
Hadley Wickham [ctb],
Kenton Russell [ctb],
Kent Johnson [ctb],
Barret Schloerke [ctb],
jQuery Foundation and contributors [ctb, cph] (jQuery library),
Vladimir Agafonkin [ctb, cph] (Leaflet library),
CloudMade [cph] (Leaflet library),
Leaflet contributors [ctb] (Leaflet library),
Leaflet Providers contributors [ctb, cph] (Leaflet Providers plugin),
Brandon Copeland [ctb, cph] (leaflet-measure plugin),
Joerg Dietrich [ctb, cph] (Leaflet.Terminator plugin),
Benjamin Becquet [ctb, cph] (Leaflet.MagnifyingGlass plugin),
Norkart AS [ctb, cph] (Leaflet.MiniMap plugin),
L. Voogdt [ctb, cph] (Leaflet.awesome-markers plugin),
Daniel Montague [ctb, cph] (Leaflet.EasyButton plugin),
Kartena AB [ctb, cph] (Proj4Leaflet plugin),
Robert Kajic [ctb, cph] (leaflet-locationfilter plugin),
Mapbox [ctb, cph] (leaflet-omnivore plugin),
Michael Bostock [ctb, cph] (topojson),
RStudio [cph]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between leaflet versions 1.1.0 dated 2017-02-21 and 2.0.0 dated 2018-04-20
leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/Leaflet.label |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/jquery/jquery.js |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/leaflet-measure.js |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/leaflet-omnivore.js |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/CONTRIBUTING.md |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/README.md |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/bower.json |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/css |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/license.md |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet/images/1px.png |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet/leaflet-src.js |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/leaflet.markercluster-src.js |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/leaflet.markercluster.freezable-src.js |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/leaflet.markercluster.layersupport-src.js |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Proj4Leaflet/proj4.js |only leaflet-2.0.0/leaflet/DESCRIPTION | 17 leaflet-2.0.0/leaflet/LICENSE.note | 101 leaflet-2.0.0/leaflet/MD5 | 292 +- leaflet-2.0.0/leaflet/NAMESPACE | 6 leaflet-2.0.0/leaflet/NEWS | 74 leaflet-2.0.0/leaflet/R/colors.R | 128 - leaflet-2.0.0/leaflet/R/controls.R | 21 leaflet-2.0.0/leaflet/R/data.R | 13 leaflet-2.0.0/leaflet/R/dependencies.R | 53 leaflet-2.0.0/leaflet/R/layers.R | 530 ++-- leaflet-2.0.0/leaflet/R/leaflet.R | 69 leaflet-2.0.0/leaflet/R/legacy.R | 48 leaflet-2.0.0/leaflet/R/legend.R | 125 - leaflet-2.0.0/leaflet/R/methods.R | 74 leaflet-2.0.0/leaflet/R/normalize-SharedData.R | 4 leaflet-2.0.0/leaflet/R/normalize-sf.R | 23 leaflet-2.0.0/leaflet/R/normalize-sp.R | 2 leaflet-2.0.0/leaflet/R/normalize.R | 34 leaflet-2.0.0/leaflet/R/plugin-awesomeMarkers.R | 74 leaflet-2.0.0/leaflet/R/plugin-easybutton.R | 78 leaflet-2.0.0/leaflet/R/plugin-graticule.R | 13 leaflet-2.0.0/leaflet/R/plugin-measure.R | 92 leaflet-2.0.0/leaflet/R/plugin-minimap.R | 31 leaflet-2.0.0/leaflet/R/plugin-omnivore.R | 8 leaflet-2.0.0/leaflet/R/plugin-providers.R | 26 leaflet-2.0.0/leaflet/R/plugin-simplegraticule.R | 12 leaflet-2.0.0/leaflet/R/plugin-terminator.R | 9 leaflet-2.0.0/leaflet/R/scalebar.R | 20 leaflet-2.0.0/leaflet/R/selection.R | 2 leaflet-2.0.0/leaflet/R/shiny.R | 7 leaflet-2.0.0/leaflet/R/utils.R | 77 leaflet-2.0.0/leaflet/README.md | 2 leaflet-2.0.0/leaflet/data/gadmCHE.rda |binary leaflet-2.0.0/leaflet/data/providers.details.rda |binary leaflet-2.0.0/leaflet/data/providers.rda |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/leaflet.js | 377 ++- leaflet-2.0.0/leaflet/inst/htmlwidgets/leaflet.yaml | 13 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/cancel.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/cancel_@2X.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/check.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/check_@2X.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/focus.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/focus_@2X.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/rulers.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/rulers_@2X.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/start.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/start_@2X.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/trash.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/images/trash_@2X.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-measure/leaflet-measure.min.js | 8 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/LICENSE |only leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/index.js | 7 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/leaflet-omnivore.min.js | 2 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/package.json | 9 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/leaflet-providers.js | 156 + leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/package.json | 18 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/providers.json | 1190 +++++----- leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/rstudio_install.md |only leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet/images/layers-2x.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet/images/layers.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet/images/marker-icon-2x.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet/images/marker-icon.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet/images/marker-shadow.png |binary leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet/leaflet.css | 245 +- leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet/leaflet.js | 14 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leafletfix/leafletfix.css | 34 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/rstudio_leaflet |only leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/Leaflet-MiniMap/Control.MiniMap.js | 31 leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/Leaflet-MiniMap/Control.MiniMap.min.js | 2 leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/Leaflet.EasyButton/easy-button.js | 37 leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/Leaflet.Graticule/Leaflet.Graticule.js |only leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/leaflet.markercluster.freezable.js |only leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/leaflet.markercluster.js | 5 leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/leaflet.markercluster.layersupport.js |only leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/package.json |only leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/Proj4Leaflet/proj4-compressed.js | 6 leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/Proj4Leaflet/proj4leaflet.js | 348 -- leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/leaflet-locationfilter/locationfilter.css | 41 leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/leaflet-locationfilter/locationfilter.js | 2 leaflet-2.0.0/leaflet/inst/legacy/examples/choropleth/global.R | 10 leaflet-2.0.0/leaflet/inst/legacy/examples/choropleth/server.R | 22 leaflet-2.0.0/leaflet/inst/legacy/examples/choropleth/ui.R | 32 leaflet-2.0.0/leaflet/inst/legacy/examples/geojson/server.R | 22 leaflet-2.0.0/leaflet/inst/legacy/examples/population/server.R | 82 leaflet-2.0.0/leaflet/inst/legacy/examples/population/ui.R | 33 leaflet-2.0.0/leaflet/man/addAwesomeMarkers.Rd | 1 leaflet-2.0.0/leaflet/man/addGraticule.Rd | 6 leaflet-2.0.0/leaflet/man/addLayersControl.Rd | 14 leaflet-2.0.0/leaflet/man/addLegend.Rd | 58 leaflet-2.0.0/leaflet/man/addMeasure.Rd | 21 leaflet-2.0.0/leaflet/man/addMiniMap.Rd | 10 leaflet-2.0.0/leaflet/man/addProviderTiles.Rd | 8 leaflet-2.0.0/leaflet/man/addRasterImage.Rd | 31 leaflet-2.0.0/leaflet/man/addScaleBar.Rd | 9 leaflet-2.0.0/leaflet/man/addSimpleGraticule.Rd | 7 leaflet-2.0.0/leaflet/man/addTerminator.Rd | 4 leaflet-2.0.0/leaflet/man/atlStorms2005.Rd | 1 leaflet-2.0.0/leaflet/man/awesomeIconList.Rd | 9 leaflet-2.0.0/leaflet/man/awesomeIcons.Rd | 17 leaflet-2.0.0/leaflet/man/breweries91.Rd | 1 leaflet-2.0.0/leaflet/man/colorNumeric.Rd | 48 leaflet-2.0.0/leaflet/man/deprecated.Rd | 1 leaflet-2.0.0/leaflet/man/derivePoints.Rd | 1 leaflet-2.0.0/leaflet/man/derivePolygons.Rd | 1 leaflet-2.0.0/leaflet/man/dispatch.Rd | 1 leaflet-2.0.0/leaflet/man/easyButton.Rd | 22 leaflet-2.0.0/leaflet/man/evalFormula.Rd | 1 leaflet-2.0.0/leaflet/man/expandLimits.Rd | 1 leaflet-2.0.0/leaflet/man/expandLimitsBbox.Rd | 1 leaflet-2.0.0/leaflet/man/filterNULL.Rd | 1 leaflet-2.0.0/leaflet/man/gadmCHE.Rd | 1 leaflet-2.0.0/leaflet/man/getMapData.Rd | 1 leaflet-2.0.0/leaflet/man/groupOptions.Rd |only leaflet-2.0.0/leaflet/man/iconList.Rd | 9 leaflet-2.0.0/leaflet/man/icons.Rd | 42 leaflet-2.0.0/leaflet/man/leaflet.Rd | 77 leaflet-2.0.0/leaflet/man/leafletDependencies.Rd | 1 leaflet-2.0.0/leaflet/man/leafletProxy.Rd | 18 leaflet-2.0.0/leaflet/man/makeAwesomeIcon.Rd | 17 leaflet-2.0.0/leaflet/man/makeIcon.Rd | 5 leaflet-2.0.0/leaflet/man/map-layers.Rd | 36 leaflet-2.0.0/leaflet/man/map-methods.Rd | 26 leaflet-2.0.0/leaflet/man/map-options.Rd | 69 leaflet-2.0.0/leaflet/man/map-shiny.Rd | 6 leaflet-2.0.0/leaflet/man/mapOptions.Rd | 3 leaflet-2.0.0/leaflet/man/previewColors.Rd | 1 leaflet-2.0.0/leaflet/man/providers.Rd | 1 leaflet-2.0.0/leaflet/man/providers.details.Rd | 1 leaflet-2.0.0/leaflet/man/remove.Rd | 30 leaflet-2.0.0/leaflet/man/safeLabel.Rd | 3 leaflet-2.0.0/leaflet/man/showGroup.Rd | 3 leaflet-2.0.0/leaflet/man/validateCoords.Rd | 8 leaflet-2.0.0/leaflet/tests/test-all.R | 2 leaflet-2.0.0/leaflet/tests/testit/test-colors.R | 12 leaflet-2.0.0/leaflet/tests/testit/test-icon.R | 2 leaflet-2.0.0/leaflet/tests/testit/test-legend.R | 72 leaflet-2.0.0/leaflet/tests/testit/test-remote.R | 48 leaflet-2.0.0/leaflet/tests/testit/test-utils.R | 8 leaflet-2.0.0/leaflet/tests/testthat/test-colors.R | 8 leaflet-2.0.0/leaflet/tests/testthat/test-normalize-2.R | 209 - leaflet-2.0.0/leaflet/tests/testthat/test-normalize.R | 21 156 files changed, 3373 insertions(+), 2453 deletions(-)
Title: Tools for Healthcare Machine Learning
Description: A machine learning toolbox tailored to healthcare data.
Author: Levi Thatcher [aut],
Michael Levy [aut, cre],
Mike Mastanduno [aut],
Taylor Larsen [aut],
Taylor Miller [aut]
Maintainer: Michael Levy <michael.levy@healthcatalyst.com>
Diff between healthcareai versions 1.2.4 dated 2018-02-14 and 2.0.0 dated 2018-04-20
healthcareai-1.2.4/healthcareai/R/common-LIME-like.R |only healthcareai-1.2.4/healthcareai/R/common-column-row-expectations.R |only healthcareai-1.2.4/healthcareai/R/common-connections.R |only healthcareai-1.2.4/healthcareai/R/common-correlations.R |only healthcareai-1.2.4/healthcareai/R/common-count-missing-data.R |only healthcareai-1.2.4/healthcareai/R/common-date-time.R |only healthcareai-1.2.4/healthcareai/R/common-feature-availability-profiler.R |only healthcareai-1.2.4/healthcareai/R/common-find-trends.R |only healthcareai-1.2.4/healthcareai/R/common-find-variation.R |only healthcareai-1.2.4/healthcareai/R/common-impute.R |only healthcareai-1.2.4/healthcareai/R/common-kmeans.R |only healthcareai-1.2.4/healthcareai/R/common-logHelpers.R |only healthcareai-1.2.4/healthcareai/R/common-model-performance.R |only healthcareai-1.2.4/healthcareai/R/common-nelson-rules.R |only healthcareai-1.2.4/healthcareai/R/common-plot.R |only healthcareai-1.2.4/healthcareai/R/common-process-variable-recommendations.R |only healthcareai-1.2.4/healthcareai/R/common-row-ordering.R |only healthcareai-1.2.4/healthcareai/R/common-testing-utils.R |only healthcareai-1.2.4/healthcareai/R/common-utilities.R |only healthcareai-1.2.4/healthcareai/R/kmeans-clustering-method.R |only healthcareai-1.2.4/healthcareai/R/lasso-deployment.R |only healthcareai-1.2.4/healthcareai/R/lasso-development.R |only healthcareai-1.2.4/healthcareai/R/linear-mixed-model-deployment.R |only healthcareai-1.2.4/healthcareai/R/linear-mixed-model-development.R |only healthcareai-1.2.4/healthcareai/R/random-forest-deployment.R |only healthcareai-1.2.4/healthcareai/R/random-forest-development.R |only healthcareai-1.2.4/healthcareai/R/risk-adjusted-comparisons.R |only healthcareai-1.2.4/healthcareai/R/supervised-model-deployment-params.R |only healthcareai-1.2.4/healthcareai/R/supervised-model-deployment.R |only healthcareai-1.2.4/healthcareai/R/supervised-model-development-params.R |only healthcareai-1.2.4/healthcareai/R/supervised-model-development.R |only healthcareai-1.2.4/healthcareai/R/unsupervised-model-params.R |only healthcareai-1.2.4/healthcareai/R/unsupervised-model.R |only healthcareai-1.2.4/healthcareai/R/use-globals.R |only healthcareai-1.2.4/healthcareai/R/xgboost-deployment.R |only healthcareai-1.2.4/healthcareai/R/xgboost-development.R |only healthcareai-1.2.4/healthcareai/inst |only healthcareai-1.2.4/healthcareai/man/KmeansClustering.Rd |only healthcareai-1.2.4/healthcareai/man/LassoDeployment.Rd |only healthcareai-1.2.4/healthcareai/man/LassoDevelopment.Rd |only healthcareai-1.2.4/healthcareai/man/LinearMixedModelDeployment.Rd |only healthcareai-1.2.4/healthcareai/man/LinearMixedModelDevelopment.Rd |only healthcareai-1.2.4/healthcareai/man/RandomForestDeployment.Rd |only healthcareai-1.2.4/healthcareai/man/RandomForestDevelopment.Rd |only healthcareai-1.2.4/healthcareai/man/RiskAdjustedComparisons.Rd |only healthcareai-1.2.4/healthcareai/man/SupervisedModelDeployment.Rd |only healthcareai-1.2.4/healthcareai/man/SupervisedModelDeploymentParams.Rd |only healthcareai-1.2.4/healthcareai/man/SupervisedModelDevelopment.Rd |only healthcareai-1.2.4/healthcareai/man/SupervisedModelDevelopmentParams.Rd |only healthcareai-1.2.4/healthcareai/man/UnsupervisedModel.Rd |only healthcareai-1.2.4/healthcareai/man/UnsupervisedModelParams.Rd |only healthcareai-1.2.4/healthcareai/man/XGBoostDeployment.Rd |only healthcareai-1.2.4/healthcareai/man/XGBoostDevelopment.Rd |only healthcareai-1.2.4/healthcareai/man/addSAMUtilityCols.Rd |only healthcareai-1.2.4/healthcareai/man/assignClusterLabels.Rd |only healthcareai-1.2.4/healthcareai/man/calculateAllCorrelations.Rd |only healthcareai-1.2.4/healthcareai/man/calculateCOV.Rd |only healthcareai-1.2.4/healthcareai/man/calculateConfusion.Rd |only healthcareai-1.2.4/healthcareai/man/calculateHourBins.Rd |only healthcareai-1.2.4/healthcareai/man/calculatePerformance.Rd |only healthcareai-1.2.4/healthcareai/man/calculateSDChanges.Rd |only healthcareai-1.2.4/healthcareai/man/calculateTargetedCorrelations.Rd |only healthcareai-1.2.4/healthcareai/man/calulcateAlternatePredictions.Rd |only healthcareai-1.2.4/healthcareai/man/convertDateTimeColToDummies.Rd |only healthcareai-1.2.4/healthcareai/man/countDaysSinceFirstDate.Rd |only healthcareai-1.2.4/healthcareai/man/countPercentEmpty.Rd |only healthcareai-1.2.4/healthcareai/man/createAllCombinations.Rd |only healthcareai-1.2.4/healthcareai/man/createVarianceTallTable.Rd |only healthcareai-1.2.4/healthcareai/man/dataScale.Rd |only healthcareai-1.2.4/healthcareai/man/distancePointLine.Rd |only healthcareai-1.2.4/healthcareai/man/distancePointSegment.Rd |only healthcareai-1.2.4/healthcareai/man/featureAvailabilityProfiler.Rd |only healthcareai-1.2.4/healthcareai/man/findBestAlternateScenarios.Rd |only healthcareai-1.2.4/healthcareai/man/findElbow.Rd |only healthcareai-1.2.4/healthcareai/man/findTrends.Rd |only healthcareai-1.2.4/healthcareai/man/findVariation.Rd |only healthcareai-1.2.4/healthcareai/man/generateAUC.Rd |only healthcareai-1.2.4/healthcareai/man/getCutOffList.Rd |only healthcareai-1.2.4/healthcareai/man/getPipedValue.Rd |only healthcareai-1.2.4/healthcareai/man/getPipedWordCount.Rd |only healthcareai-1.2.4/healthcareai/man/groupedLOCF.Rd |only healthcareai-1.2.4/healthcareai/man/ignoreSpecWarn.Rd |only healthcareai-1.2.4/healthcareai/man/imputeColumn.Rd |only healthcareai-1.2.4/healthcareai/man/imputeDF.Rd |only healthcareai-1.2.4/healthcareai/man/initializeParamsForTesting.Rd |only healthcareai-1.2.4/healthcareai/man/isBinary.Rd |only healthcareai-1.2.4/healthcareai/man/isNumeric.Rd |only healthcareai-1.2.4/healthcareai/man/isTargetYN.Rd |only healthcareai-1.2.4/healthcareai/man/lineMagnitude.Rd 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Title: A Framework for Data-Driven Stochastic Disease Spread
Simulations
Description: Provides an efficient and very flexible framework to
conduct data-driven epidemiological modeling in realistic large
scale disease spread simulations. The framework integrates
infection dynamics in subpopulations as continuous-time Markov
chains using the Gillespie stochastic simulation algorithm and
incorporates available data such as births, deaths and movements
as scheduled events at predefined time-points. Using C code for
the numerical solvers and 'OpenMP' (if available) to divide work
over multiple processors ensures high performance when simulating
a sample outcome. One of our design goal was to make the package
extendable and enable usage of the numerical solvers from other R
extension packages in order to facilitate complex epidemiological
research. The package contains template models and can be extended
with user-defined models.
Author: Stefan Widgren [aut, cre] (<https://orcid.org/0000-0001-5745-2284>),
Robin Eriksson [aut] (<https://orcid.org/0000-0002-4291-712X>),
Stefan Engblom [aut] (<https://orcid.org/0000-0002-3614-1732>),
Pavol Bauer [aut] (<https://orcid.org/0000-0003-4328-7171>),
Attractive Chaos [cph] (Author of 'kvec.h', a generic dynamic array)
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between SimInf versions 5.1.0 dated 2017-10-18 and 6.0.0 dated 2018-04-20
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SimInf-6.0.0/SimInf/src/SimInf.h | 17 SimInf-6.0.0/SimInf/src/init.c | 9 SimInf-6.0.0/SimInf/src/misc/SimInf_arg.c | 89 SimInf-6.0.0/SimInf/src/misc/SimInf_arg.h | 2 SimInf-6.0.0/SimInf/src/misc/SimInf_ldata.c | 7 SimInf-6.0.0/SimInf/src/models/SEIR.c | 6 SimInf-6.0.0/SimInf/src/models/SIR.c | 6 SimInf-6.0.0/SimInf/src/models/SISe.c | 6 SimInf-6.0.0/SimInf/src/models/SISe3.c | 6 SimInf-6.0.0/SimInf/src/models/SISe3_sp.c | 6 SimInf-6.0.0/SimInf/src/models/SISe_sp.c | 6 SimInf-6.0.0/SimInf/src/solvers |only SimInf-6.0.0/SimInf/tests/SEIR.R | 323 + SimInf-6.0.0/SimInf/tests/SIR.R | 52 SimInf-6.0.0/SimInf/tests/SISe.R | 254 - SimInf-6.0.0/SimInf/tests/SISe3.R | 127 SimInf-6.0.0/SimInf/tests/SISe3_sp.R | 135 SimInf-6.0.0/SimInf/tests/SISe_sp.R | 113 SimInf-6.0.0/SimInf/tests/SimInf.R | 253 - SimInf-6.0.0/SimInf/tests/SimInf_events.R | 115 SimInf-6.0.0/SimInf/tests/SimInf_model.R | 211 - SimInf-6.0.0/SimInf/tests/ldata_sp.R | 2 SimInf-6.0.0/SimInf/tests/measures.R | 163 SimInf-6.0.0/SimInf/tests/model_builder.R | 140 SimInf-6.0.0/SimInf/tests/package_skeleton.R | 9 SimInf-6.0.0/SimInf/tests/phi.R | 34 SimInf-6.0.0/SimInf/tests/run_outer.R | 38 SimInf-6.0.0/SimInf/tests/sample_select.R | 49 SimInf-6.0.0/SimInf/tests/solver_aem.R |only SimInf-6.0.0/SimInf/tests/sparse.R | 154 SimInf-6.0.0/SimInf/vignettes/SimInf.Rnw | 2630 ++++++++------- SimInf-6.0.0/SimInf/vignettes/SimInf.bib | 369 +- SimInf-6.0.0/SimInf/vignettes/img/SISe_sp-prevalence.pdf |only SimInf-6.0.0/SimInf/vignettes/img/enter.pdf |binary SimInf-6.0.0/SimInf/vignettes/img/exit.pdf |binary SimInf-6.0.0/SimInf/vignettes/img/external-shift.pdf |binary SimInf-6.0.0/SimInf/vignettes/img/external.pdf |binary SimInf-6.0.0/SimInf/vignettes/img/internal.pdf |binary SimInf-6.0.0/SimInf/vignettes/img/mparse-epicurve.pdf |only SimInf-6.0.0/SimInf/vignettes/img/overview.pdf |only SimInf-6.0.0/SimInf/vignettes/img/predator-prey.png |only SimInf-6.0.0/SimInf/vignettes/img/temporal-network.pdf |only 159 files changed, 8705 insertions(+), 5733 deletions(-)
Title: Semiparametric Estimation of Stochastic Frontier Models
Description: Semiparametric Estimation of Stochastic Frontier Models following a two step procedure: in the first step semiparametric or nonparametric regression techniques are used to relax parametric restrictions of the functional form representing technology and in the second step variance parameters are obtained by pseudolikelihood estimators or by method of moments.
Author: Giancarlo Ferrara and Francesco Vidoli
Maintainer: Giancarlo Ferrara <giancarlo.ferrara@gmail.com>
Diff between semsfa versions 1.0 dated 2015-02-18 and 1.1 dated 2018-04-20
semsfa-1.0/semsfa/R/summary.semsfa.R |only semsfa-1.1/semsfa/DESCRIPTION | 10 - semsfa-1.1/semsfa/MD5 | 16 - semsfa-1.1/semsfa/NAMESPACE | 4 semsfa-1.1/semsfa/R/semsfa.R | 232 +++++++++++++++------------ semsfa-1.1/semsfa/R/semsfa.summary.R |only semsfa-1.1/semsfa/man/efficiencies.semsfa.Rd | 6 semsfa-1.1/semsfa/man/semsfa-package.Rd | 8 semsfa-1.1/semsfa/man/semsfa.Rd | 45 +++-- semsfa-1.1/semsfa/man/summary.semsfa.Rd | 2 10 files changed, 188 insertions(+), 135 deletions(-)
Title: Futile Options Management
Description: A scoped options management framework. Used in other packages.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>
Diff between futile.options versions 1.0.0 dated 2010-04-06 and 1.0.1 dated 2018-04-20
DESCRIPTION | 15 ++++++++------- MD5 |only NAMESPACE | 5 +++++ README.md |only man/futile.options-package.Rd | 9 ++++----- 5 files changed, 17 insertions(+), 12 deletions(-)
More information about futile.options at CRAN
Permanent link
Title: Spatio-Temporal Under-Five Mortality Methods for Estimation
Description: Provides methods for estimating, projecting, and plotting spatio-temporal
under-five mortality rates, described in Mercer et al. (2015) <doi:10.1214/15-AOAS872>.
Author: Bryan D Martin [cre, aut],
Zehang R Li [aut],
Yuan Hsiao [aut],
Jessica Godwin [aut],
Jon Wakefield [aut],
Samuel J Clark [aut]
Maintainer: Bryan D Martin <bmartin6@uw.edu>
Diff between SUMMER versions 0.1.0 dated 2017-11-30 and 0.2.0 dated 2018-04-20
SUMMER-0.1.0/SUMMER/R/Uganda.R |only SUMMER-0.1.0/SUMMER/R/UgandaMap.R |only SUMMER-0.1.0/SUMMER/R/projINLA_multi.R |only SUMMER-0.1.0/SUMMER/R/spagPlot.R |only SUMMER-0.1.0/SUMMER/data/Uganda.rda |only SUMMER-0.1.0/SUMMER/data/UgandaMap.rda |only SUMMER-0.1.0/SUMMER/inst/doc/summer-vignette.R |only SUMMER-0.1.0/SUMMER/inst/doc/summer-vignette.Rmd |only SUMMER-0.1.0/SUMMER/inst/doc/summer-vignette.html |only SUMMER-0.1.0/SUMMER/man/Uganda.Rd |only SUMMER-0.1.0/SUMMER/man/UgandaMap.Rd |only SUMMER-0.1.0/SUMMER/man/projINLA_multi.Rd |only SUMMER-0.1.0/SUMMER/man/spagPlot.Rd |only SUMMER-0.1.0/SUMMER/vignettes/summer-vignette.Rmd |only SUMMER-0.2.0/SUMMER/DESCRIPTION | 33 SUMMER-0.2.0/SUMMER/MD5 | 79 - SUMMER-0.2.0/SUMMER/NAMESPACE | 11 SUMMER-0.2.0/SUMMER/R/ChangeRegion.R | 2 SUMMER-0.2.0/SUMMER/R/DemoData.R |only SUMMER-0.2.0/SUMMER/R/DemoData2.R |only SUMMER-0.2.0/SUMMER/R/DemoMap.R |only SUMMER-0.2.0/SUMMER/R/DemoMap2.R |only SUMMER-0.2.0/SUMMER/R/SUMMER.R | 2 SUMMER-0.2.0/SUMMER/R/aggregateSurvey.R |only SUMMER-0.2.0/SUMMER/R/countrySummary.R | 21 SUMMER-0.2.0/SUMMER/R/countrySummary_mult.R | 4 SUMMER-0.2.0/SUMMER/R/fitINLA.R | 773 ++++++++++++++--- SUMMER-0.2.0/SUMMER/R/fitspace.R |only SUMMER-0.2.0/SUMMER/R/getBirths.R | 18 SUMMER-0.2.0/SUMMER/R/mapPlot.R | 158 +-- SUMMER-0.2.0/SUMMER/R/plot_projINLA.R |only SUMMER-0.2.0/SUMMER/R/projINLA.R | 141 +-- SUMMER-0.2.0/SUMMER/R/simhyper.R | 18 SUMMER-0.2.0/SUMMER/README.md | 24 SUMMER-0.2.0/SUMMER/build/vignette.rds |binary SUMMER-0.2.0/SUMMER/data/DemoData.rda |only SUMMER-0.2.0/SUMMER/data/DemoData2.rda |only SUMMER-0.2.0/SUMMER/data/DemoMap.rda |only SUMMER-0.2.0/SUMMER/data/DemoMap2.rda |only SUMMER-0.2.0/SUMMER/inst/doc/summer-vignette.pdf |only SUMMER-0.2.0/SUMMER/inst/doc/summer-vignette.pdf.asis |only SUMMER-0.2.0/SUMMER/man/ChangeRegion.Rd | 2 SUMMER-0.2.0/SUMMER/man/DemoData.Rd |only SUMMER-0.2.0/SUMMER/man/DemoData2.Rd |only SUMMER-0.2.0/SUMMER/man/DemoMap.Rd |only SUMMER-0.2.0/SUMMER/man/DemoMap2.Rd |only SUMMER-0.2.0/SUMMER/man/SUMMER-package.Rd | 2 SUMMER-0.2.0/SUMMER/man/aggregateSurvey.Rd |only SUMMER-0.2.0/SUMMER/man/countrySummary.Rd | 7 SUMMER-0.2.0/SUMMER/man/countrySummary_mult.Rd | 4 SUMMER-0.2.0/SUMMER/man/fitINLA.Rd | 95 +- SUMMER-0.2.0/SUMMER/man/fitSpace.Rd |only SUMMER-0.2.0/SUMMER/man/getBirths.Rd | 10 SUMMER-0.2.0/SUMMER/man/mapPlot.Rd | 64 - SUMMER-0.2.0/SUMMER/man/plot.projINLA.Rd |only SUMMER-0.2.0/SUMMER/man/projINLA.Rd | 65 - SUMMER-0.2.0/SUMMER/man/simhyper.Rd | 9 SUMMER-0.2.0/SUMMER/vignettes/summer-vignette.pdf.asis |only 58 files changed, 1096 insertions(+), 446 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a (bio)marker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's Seventh Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Paul Meyvisch, Ariel Alonso, Hannah M. Ensor, Christopher J. Weir & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between Surrogate versions 0.6 dated 2018-01-20 and 0.7 dated 2018-04-20
DESCRIPTION | 8 MD5 | 22 NAMESPACE | 7 NEWS | 4 R/Bootstrap.MEP.BinBin.R |only R/CausalDiagramBinBin.R | 23 R/ICA.BinBin.Grid.Sample.R | 2 R/plot.SPPBinCont.R | 29 R/plot_ICABinBin.R | 2858 ++++++++++++++++++++++---------------------- man/Bootstrap.MEP.BinBin.Rd |only man/CausalDiagramBinBin.Rd | 4 man/Fano.BinBin.Rd | 139 +- man/summary.gen.Rd | 2 13 files changed, 1575 insertions(+), 1523 deletions(-)
Title: IPEA Common Functions
Description: The most used functions on IPEA (Instituto de Pesquisa Economica Aplicada).
Most of functions deal with brazilian names.
It can guess the women single's name, extract prepositions or extract the first name.
Author: Gustavo Coelho [aut, cre],
Lucas Mation [aut],
Daniel Lima [ctb],
Igor Noberto [ctb],
JoĆ£o Victor Machado [ctb]
Maintainer: Gustavo Coelho <gustavo.coelho@ipea.gov.br>
Diff between utilsIPEA versions 0.0.5 dated 2017-11-13 and 0.0.6 dated 2018-04-20
utilsIPEA-0.0.5/utilsIPEA/man/extrai_NomeProprio.Rd |only utilsIPEA-0.0.6/utilsIPEA/DESCRIPTION | 6 utilsIPEA-0.0.6/utilsIPEA/MD5 | 18 utilsIPEA-0.0.6/utilsIPEA/NAMESPACE | 9 utilsIPEA-0.0.6/utilsIPEA/R/contador_letras.R |only utilsIPEA-0.0.6/utilsIPEA/R/extrai_nome_proprio.R | 186 +++++----- utilsIPEA-0.0.6/utilsIPEA/R/geocode.R | 2 utilsIPEA-0.0.6/utilsIPEA/README.md | 3 utilsIPEA-0.0.6/utilsIPEA/man/contar_letras.Rd |only utilsIPEA-0.0.6/utilsIPEA/man/ident_erros_munic_galileo.Rd | 2 utilsIPEA-0.0.6/utilsIPEA/tests/testthat/test_contar_letras.R |only utilsIPEA-0.0.6/utilsIPEA/tests/testthat/test_extrai_nome_proprio.R | 64 +-- 12 files changed, 142 insertions(+), 148 deletions(-)
Title: Clean Covariance Matrices Using Random Matrix Theory and
Shrinkage Estimators for Portfolio Optimization
Description: Portfolio optimization typically requires an estimate of a covariance matrix of asset returns. There are many approaches for constructing such a covariance matrix, some using the sample covariance matrix as a starting point. This package provides implementations for two such methods: random matrix theory and shrinkage estimation. Each method attempts to clean or remove noise related to the sampling process from the sample covariance matrix.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>
Diff between tawny versions 2.1.6 dated 2016-07-10 and 2.1.7 dated 2018-04-20
tawny-2.1.6/tawny/inst |only tawny-2.1.6/tawny/tests/doRUnit.R |only tawny-2.1.7/tawny/DESCRIPTION | 10 ++++----- tawny-2.1.7/tawny/MD5 | 12 +++++------ tawny-2.1.7/tawny/R/denoise.R | 35 +++++++++++++-------------------- tawny-2.1.7/tawny/man/tawny-package.Rd | 4 +-- tawny-2.1.7/tawny/tests/test-all.R |only tawny-2.1.7/tawny/tests/testit |only 8 files changed, 27 insertions(+), 34 deletions(-)
Title: Client for the 'Alteryx Promote' API
Description: Deploy, maintain, and invoke predictive models using the 'Alteryx
Promote' REST API. 'Alteryx Promote' is available at the URL:
<https://www.alteryx.com/products/alteryx-promote>.
Author: Paul E. Promote <promotedev@alteryx.com>
Maintainer: Paul E. Promote <promotedev@alteryx.com>
Diff between promote versions 1.0.1 dated 2018-01-22 and 1.0.2 dated 2018-04-20
promote-1.0.1/promote/README |only promote-1.0.2/promote/DESCRIPTION | 8 +- promote-1.0.2/promote/MD5 | 12 ++-- promote-1.0.2/promote/NAMESPACE | 1 promote-1.0.2/promote/NEWS | 3 + promote-1.0.2/promote/R/metadata.R |only promote-1.0.2/promote/R/promote.R | 71 ++++++++++++++++++++++---- promote-1.0.2/promote/man/add.metadata.Rd |only promote-1.0.2/promote/man/promote.metadata.Rd |only 9 files changed, 77 insertions(+), 18 deletions(-)
Title: Bootstrapped Basis Regression with Oracle Model Selection
Description: Routines for flexible functional form estimation via basis
regression, with model selection via the adaptive LASSO or SCAD to prevent
overfitting.
Author: Brenton Kenkel and Curtis S. Signorino
Maintainer: Brenton Kenkel <brenton.kenkel@gmail.com>
Diff between polywog versions 0.4-0 dated 2014-04-24 and 0.4-1 dated 2018-04-20
DESCRIPTION | 11 - MD5 | 64 +++--- NAMESPACE | 32 +++ R/RcppExports.R | 10 - R/bootPolywog.r | 4 R/fitSCAD.r | 4 R/margEff.polywog.r | 2 R/plot.preplot.polywog.r | 14 - R/polywog.r | 6 R/print.polywog.r | 2 R/summary.polywog.r | 2 R/vcov.polywog.r | 2 README.md | 8 inst/examples/bootPolywog.r | 2 inst/examples/cv.polywog.r | 2 inst/examples/margEff.polywog.r | 2 inst/examples/plot.polywog.r | 2 inst/examples/polywog.r | 2 inst/examples/predVals.r | 2 man/bootPolywog.Rd | 141 ++++++--------- man/cv.polywog.Rd | 96 ++++------ man/margEff.polywog.Rd | 70 +++---- man/model.frame.polywog.Rd | 34 +-- man/model.matrix.polywog.Rd | 45 ++-- man/plot.margEff.polywog.Rd | 16 - man/plot.polywog.Rd | 109 +++++------ man/polywog-package.Rd | 34 +-- man/polywog.Rd | 374 +++++++++++++++++++--------------------- man/predVals.Rd | 193 +++++++++----------- man/predict.polywog.Rd | 68 +++---- man/summary.margEff.polywog.Rd | 14 - man/summary.polywog.Rd | 37 +-- src/RcppExports.cpp | 109 +++++------ 33 files changed, 738 insertions(+), 775 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <http://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Heidi Seibold [ctb] (<https://orcid.org/0000-0002-8960-9642>),
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-0 dated 2017-12-18 and 1.2-1 dated 2018-04-20
DESCRIPTION | 19 ++++---- MD5 | 70 +++++++++++++++---------------- R/cforest.R | 4 - R/ctree.R | 9 ++- R/extree.R | 4 - R/glmtree.R | 25 +++++++++-- R/lmtree.R | 4 - R/modelparty.R | 7 ++- R/plot.R | 3 - R/utils.R | 4 - inst/NEWS.Rd | 40 +++++++++++++++++ inst/doc/constparty.pdf |binary inst/doc/ctree.pdf |binary inst/doc/mob.R | 5 -- inst/doc/mob.Rnw | 28 +++++------- inst/doc/mob.pdf |binary inst/doc/partykit.pdf |binary man/cforest.Rd | 62 +++++++++++++++------------ man/ctree_control.Rd | 50 ++++++++++++---------- src/partykit-init.c | 2 src/rfweights.c | 35 ++++++++++++--- src/rfweights.h | 2 tests/Examples/partykit-Ex.Rout.save | 34 +++++++++++---- tests/bugfixes.Rout.save | 13 ++++- tests/regtest-MIA.Rout.save | 6 +- tests/regtest-cforest.R | 41 +++++++++++++++++- tests/regtest-cforest.Rout.save | 47 ++++++++++++++++++-- tests/regtest-ctree.Rout.save | 6 +- tests/regtest-nmax.Rout.save | 6 +- tests/regtest-node.Rout.save | 6 +- tests/regtest-party.Rout.save | 76 ++++++++++++++++++++------------- tests/regtest-split.Rout.save | 6 +- tests/regtest-weights.R |only tests/regtest-weights.Rout.save |only vignettes/ctree.Rout.save | 79 +++++++++++++++++++++++------------ vignettes/mob.Rnw | 28 +++++------- vignettes/mob.Rout.save | 55 +++++++++++------------- 37 files changed, 505 insertions(+), 271 deletions(-)
Title: Common Types for Tawny
Description: Base library of types for tawny and related packages. This is meant to be a common library and has no functionality aside from defining types.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>
Diff between tawny.types versions 1.1.3 dated 2014-05-06 and 1.1.5 dated 2018-04-20
tawny.types-1.1.3/tawny.types/inst |only tawny.types-1.1.3/tawny.types/tests/doRUnit.R |only tawny.types-1.1.5/tawny.types/DESCRIPTION | 14 +++++++------- tawny.types-1.1.5/tawny.types/MD5 | 10 +++++----- tawny.types-1.1.5/tawny.types/NAMESPACE | 4 ++++ tawny.types-1.1.5/tawny.types/man/tawny.types-package.Rd | 4 ++-- tawny.types-1.1.5/tawny.types/tests/test-all.R |only tawny.types-1.1.5/tawny.types/tests/testit |only 8 files changed, 18 insertions(+), 14 deletions(-)
Title: Build Panel Data Sets from PSID Raw Data
Description: Makes it easy to build panel data in wide format from Panel Survey
of Income Dynamics ('PSID') delivered raw data. Deals with data downloaded and
pre-processed by 'Stata' or 'SAS', or can optionally download directly from
the PSID server using the 'SAScii' package. 'psidR' takes care of merging
data from each wave onto a cross-period index file, so that individuals can be
followed over time. The user must specify which years they are interested in,
and the 'PSID' variable names (e.g. ER21003) for each year (they differ in each
year). The package offers helper functions to retrieve variable names from different
waves. There are different panel data designs and sample subsetting criteria
implemented ("SRC", "SEO", "immigrant" and "latino" samples).
Author: Florian Oswald
Maintainer: Florian Oswald <florian.oswald@gmail.com>
Diff between psidR versions 1.4 dated 2016-10-29 and 1.5 dated 2018-04-20
psidR-1.4/psidR/inst/psid-lists/indvars-false.txt |only psidR-1.5/psidR/DESCRIPTION | 20 - psidR-1.5/psidR/MD5 | 41 +- psidR-1.5/psidR/NAMESPACE | 12 psidR-1.5/psidR/NEWS | 12 psidR-1.5/psidR/R/build.panel.r | 329 +++++++++++++---- psidR-1.5/psidR/R/get.variable.names.r |only psidR-1.5/psidR/R/makeids.r | 22 - psidR-1.5/psidR/R/psidR-package.r | 8 psidR-1.5/psidR/inst/psid-lists/famvars-small.txt |only psidR-1.5/psidR/inst/psid-lists/famvars.txt | 354 ++++++++++++++----- psidR-1.5/psidR/inst/psid-lists/indvars-small.txt |only psidR-1.5/psidR/inst/psid-lists/indvars.txt | 259 +++++++------ psidR-1.5/psidR/inst/psid-lists/psid.xlsx |only psidR-1.5/psidR/inst/psid-lists/wealthvars-small.txt |only psidR-1.5/psidR/inst/psid-lists/wealthvars.txt |only psidR-1.5/psidR/man/build.panel.Rd | 28 - psidR-1.5/psidR/man/build.psid.Rd | 12 psidR-1.5/psidR/man/get.psid.Rd | 1 psidR-1.5/psidR/man/get.variable.names.Rd |only psidR-1.5/psidR/man/getNamesPSID.Rd |only psidR-1.5/psidR/man/make.char.Rd | 1 psidR-1.5/psidR/man/makeids.Rd | 1 psidR-1.5/psidR/man/psidR.Rd | 4 psidR-1.5/psidR/man/testPSID.Rd | 1 psidR-1.5/psidR/tests/testthat/test_buildpanel.R | 21 + 26 files changed, 799 insertions(+), 327 deletions(-)
Title: Automates the Creation of New Statistical Analysis Projects
Description: Provides functions to
automatically build a directory structure for a new R
project. Using this structure, 'ProjectTemplate'
automates data loading, preprocessing, library
importing and unit testing.
Author: Aleksandar Blagotic [ctb],
Diego Valle-Jones [ctb],
Jeffrey Breen [ctb],
Joakim Lundborg [ctb],
John Myles White [aut, cph],
Josh Bode [ctb],
Kenton White [ctb, cre],
Kirill Mueller [ctb],
Matteo Redaelli [ctb],
Noah Lorang [ctb],
Patrick Schalk [ctb],
Dominik Schneider [ctb]
Maintainer: Kenton White <jkentonwhite@gmail.com>
Diff between ProjectTemplate versions 0.8 dated 2017-08-09 and 0.8.2 dated 2018-04-20
ProjectTemplate-0.8.2/ProjectTemplate/DESCRIPTION | 23 ProjectTemplate-0.8.2/ProjectTemplate/MD5 | 137 ++-- ProjectTemplate-0.8.2/ProjectTemplate/NAMESPACE | 2 ProjectTemplate-0.8.2/ProjectTemplate/NEWS.md |only ProjectTemplate-0.8.2/ProjectTemplate/R/add.config.R | 29 ProjectTemplate-0.8.2/ProjectTemplate/R/config.R | 176 ++--- ProjectTemplate-0.8.2/ProjectTemplate/R/create.project.R | 36 - ProjectTemplate-0.8.2/ProjectTemplate/R/create.template.R |only ProjectTemplate-0.8.2/ProjectTemplate/R/list.data.R | 13 ProjectTemplate-0.8.2/ProjectTemplate/R/load.project.R | 34 - ProjectTemplate-0.8.2/ProjectTemplate/R/migrate.template.R |only ProjectTemplate-0.8.2/ProjectTemplate/R/preinstalled.readers.R | 3 ProjectTemplate-0.8.2/ProjectTemplate/R/rds.reader.R |only ProjectTemplate-0.8.2/ProjectTemplate/R/test.project.R | 2 ProjectTemplate-0.8.2/ProjectTemplate/R/translate.dcf.R | 22 ProjectTemplate-0.8.2/ProjectTemplate/R/xls.reader.R | 10 ProjectTemplate-0.8.2/ProjectTemplate/R/xlsx.reader.R | 14 ProjectTemplate-0.8.2/ProjectTemplate/build/partial.rdb |binary ProjectTemplate-0.8.2/ProjectTemplate/inst/defaults/config/default.dcf | 2 ProjectTemplate-0.8.2/ProjectTemplate/inst/defaults/config/types.dcf |only ProjectTemplate-0.8.2/ProjectTemplate/inst/defaults/templates |only ProjectTemplate-0.8.2/ProjectTemplate/inst/example_data/example_44.rds |only ProjectTemplate-0.8.2/ProjectTemplate/man/add.config.Rd | 10 ProjectTemplate-0.8.2/ProjectTemplate/man/create.project.Rd | 13 ProjectTemplate-0.8.2/ProjectTemplate/man/create.template.Rd |only ProjectTemplate-0.8.2/ProjectTemplate/man/list.data.Rd | 6 ProjectTemplate-0.8.2/ProjectTemplate/man/load.project.Rd | 13 ProjectTemplate-0.8.2/ProjectTemplate/man/migrate.template.Rd |only ProjectTemplate-0.8.2/ProjectTemplate/man/preinstalled.readers.Rd | 2 ProjectTemplate-0.8.2/ProjectTemplate/man/rds.reader.Rd |only ProjectTemplate-0.8.2/ProjectTemplate/man/translate.dcf.Rd | 2 ProjectTemplate-0.8.2/ProjectTemplate/man/xls.reader.Rd | 2 ProjectTemplate-0.8.2/ProjectTemplate/man/xlsx.reader.Rd | 2 ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-add_config.R |only ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-add_extension.R | 2 ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-autogen.R | 2 ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-cache.R | 330 +++++----- ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-clear.R | 142 ++-- ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-config.R | 41 - ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-create.R | 20 ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-list.R | 48 - ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-load.R | 38 - ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-migration.R | 14 ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-override_config.R |only ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-readers.R | 107 ++- ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-reload.R | 118 +-- ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-require.R | 2 ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-templates.R |only ProjectTemplate-0.8.2/ProjectTemplate/tests/testthat/test-version.R | 24 ProjectTemplate-0.8/ProjectTemplate/inst/defaults/full |only 50 files changed, 763 insertions(+), 678 deletions(-)
More information about ProjectTemplate at CRAN
Permanent link
Title: Modeling Data with Functional Programming
Description: A language extension to efficiently write functional programs in R. Syntax extensions include multi-part function definitions, pattern matching, guard statements, built-in (optional) type safety.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>
Diff between lambda.r versions 1.2 dated 2017-09-16 and 1.2.2 dated 2018-04-20
lambda.r-1.2.2/lambda.r/DESCRIPTION | 11 ++- lambda.r-1.2.2/lambda.r/MD5 | 70 ++++++++++++------------ lambda.r-1.2.2/lambda.r/NAMESPACE | 1 lambda.r-1.2.2/lambda.r/R/framework.R | 18 +++++- lambda.r-1.2.2/lambda.r/R/introspection.R | 10 +-- lambda.r-1.2.2/lambda.r/man/lambda.r-package.Rd | 4 - lambda.r-1.2.2/lambda.r/tests/test-all.R |only lambda.r-1.2.2/lambda.r/tests/testit |only lambda.r-1.2/lambda.r/inst |only lambda.r-1.2/lambda.r/tests/doRUnit.R |only 10 files changed, 66 insertions(+), 48 deletions(-)
Title: Read 'IPUMS' Extract Files
Description: An easy way to import census, survey and geographic data provided by 'IPUMS'
into R plus tools to help use the associated metadata to make analysis easier. 'IPUMS'
data describing 1.4 billion individuals drawn from over 750 censuses and surveys is
available free of charge from our website <https://ipums.org>.
Author: Greg Freedman Ellis [aut, cre],
Derek Burk [ctb],
Joe Grover [ctb],
Minnesota Population Center [cph]
Maintainer: Greg Freedman Ellis <gfellis@umn.edu>
Diff between ipumsr versions 0.1.1 dated 2017-12-15 and 0.2.0 dated 2018-04-20
DESCRIPTION | 8 MD5 | 100 +++--- NAMESPACE | 8 NEWS.md | 16 + R/ddi_read.r | 25 + R/import.r | 4 R/list_files.r | 22 - R/micro_read.r | 31 +- R/nhgis_read.r | 15 - R/shape_join.r | 104 +++--- R/shape_read.r | 33 +- R/terra_read.r | 147 ++------- R/utils.r | 34 +- README.md | 4 build/vignette.rds |binary inst/WORDLIST |only inst/doc/ipums-cps.R | 230 +++++++-------- inst/doc/ipums-cps.Rmd | 10 inst/doc/ipums-cps.html | 335 +++++++++++++--------- inst/doc/ipums-geography.R | 404 +++++++++++++-------------- inst/doc/ipums-geography.Rmd | 6 inst/doc/ipums-geography.html | 400 +++++++++++++------------- inst/doc/ipums-nhgis.R | 182 ++++++------ inst/doc/ipums-nhgis.Rmd | 20 - inst/doc/ipums-nhgis.html | 254 +++++++++++----- inst/doc/ipums-terra.R |only inst/doc/ipums-terra.Rmd |only inst/doc/ipums-terra.html |only inst/doc/ipums.R | 11 inst/doc/ipums.Rmd | 35 +- inst/doc/ipums.html | 243 ++++++++-------- inst/doc/value-labels.html | 222 +++++++------- man/ipums_list_files.Rd | 9 man/make_ddi_from_scratch.Rd | 4 man/read_ipums_codebook.Rd | 2 man/read_ipums_micro.Rd | 5 man/read_ipums_sf.Rd | 14 man/read_nhgis.Rd | 13 man/read_terra_area.Rd | 18 - man/read_terra_micro.Rd | 32 -- man/read_terra_raster.Rd | 3 man/reexports.Rd | 4 man/set_ipums_var_attributes.Rd | 4 tests/testthat/test_list_files.r |only tests/testthat/test_micro.r | 23 + tests/testthat/test_terra.r | 26 + tools |only vignettes/ipums-cps.Rmd | 10 vignettes/ipums-geography.Rmd | 6 vignettes/ipums-nhgis.Rmd | 20 - vignettes/ipums-terra.Rmd |only vignettes/ipums.Rmd | 35 +- vignettes/microdata_annotated_screenshot.pdn |binary vignettes/microdata_annotated_screenshot.png |binary 54 files changed, 1703 insertions(+), 1428 deletions(-)
Title: Random Matrix Generation and Manipulation
Description: A collection of functions for manipulating matrices and generating
ensembles of random matrices. Used primarily to identify the cutoff point
for the noise portion of the eigenvalue spectrum.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>
Diff between futile.matrix versions 1.2.6 dated 2016-07-10 and 1.2.7 dated 2018-04-20
futile.matrix-1.2.6/futile.matrix/inst/unitTests |only futile.matrix-1.2.6/futile.matrix/tests/doRUnit.R |only futile.matrix-1.2.7/futile.matrix/DESCRIPTION | 10 ++++---- futile.matrix-1.2.7/futile.matrix/MD5 | 12 +++++----- futile.matrix-1.2.7/futile.matrix/R/futile.matrix-package.R | 4 +-- futile.matrix-1.2.7/futile.matrix/man/futile.matrix-package.Rd | 4 +-- futile.matrix-1.2.7/futile.matrix/tests/test-all.R |only futile.matrix-1.2.7/futile.matrix/tests/testit |only 8 files changed, 15 insertions(+), 15 deletions(-)
Title: Multivariate VAM Fitting
Description: Fits a multivariate value-added model (VAM), see Broatch and Lohr (2012) <doi:10.3102/1076998610396900>, with normally distributed test scores and a binary outcome indicator. A pseudo-likelihood approach, Wolfinger (1993) <doi:10.1080/00949659308811554>, is used for the estimation of this joint generalized linear mixed model. The inner loop of the pseudo-likelihood routine (estimation of a linear mixed model) occurs in the framework of the EM algorithm presented by Karl, Yang, and Lohr (2013) <DOI:10.1016/j.csda.2012.10.004>. This material is based upon work supported by the National Science Foundation under grants DRL-1336027 and DRL-1336265.
Author: Andrew T. Karl, Jennifer Broatch, and Jennifer Green
Maintainer: Andrew Karl <akarl@asu.edu>
Diff between RealVAMS versions 0.4-0 dated 2017-08-14 and 0.4-1 dated 2018-04-20
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS | 3 +++ R/vp_cp.R | 40 ++++++++++++++++++++-------------------- man/RealVAMS-package.Rd | 4 ++-- 5 files changed, 34 insertions(+), 31 deletions(-)
Title: Bivariate Angular Mixture Models
Description: Fit (using Bayesian methods) and simulate mixtures of univariate and bivariate angular distributions. Chakraborty and Wong (2017) <arXiv:1708.07804> .
Author: Saptarshi Chakraborty,
Samuel W.K. Wong
Maintainer: Saptarshi Chakraborty <c7rishi@ufl.edu>
Diff between BAMBI versions 1.1.1 dated 2017-08-28 and 1.2.1 dated 2018-04-20
BAMBI-1.1.1/BAMBI/src/init.c |only BAMBI-1.2.1/BAMBI/DESCRIPTION | 10 BAMBI-1.2.1/BAMBI/MD5 | 44 +- BAMBI-1.2.1/BAMBI/NAMESPACE | 2 BAMBI-1.2.1/BAMBI/R/RcppExports.R | 48 ++ BAMBI-1.2.1/BAMBI/R/all_postprodn_fns.R | 1 BAMBI-1.2.1/BAMBI/R/all_vmcos_fns.R | 114 +++++- BAMBI-1.2.1/BAMBI/R/all_vmsin_fns.R | 136 ++++++-- BAMBI-1.2.1/BAMBI/R/all_wnorm2_fns.R | 23 + BAMBI-1.2.1/BAMBI/R/basic_hmc.R |only BAMBI-1.2.1/BAMBI/R/bounded_hmc_modified.r |only BAMBI-1.2.1/BAMBI/R/circ_cor.R |only BAMBI-1.2.1/BAMBI/R/temp_fns.R |only BAMBI-1.2.1/BAMBI/R/utilities.r |only BAMBI-1.2.1/BAMBI/R/vmstart.R | 2 BAMBI-1.2.1/BAMBI/man/circ_cor.Rd |only BAMBI-1.2.1/BAMBI/man/circ_varcor_model.Rd |only BAMBI-1.2.1/BAMBI/man/d_fitted.Rd | 1 BAMBI-1.2.1/BAMBI/man/fit_vmcosmix.Rd | 4 BAMBI-1.2.1/BAMBI/src/Makevars | 5 BAMBI-1.2.1/BAMBI/src/Makevars.win | 5 BAMBI-1.2.1/BAMBI/src/RcppExports.cpp | 258 +++++++++++++++ BAMBI-1.2.1/BAMBI/src/basic_c_fns.cpp | 112 ++++++ BAMBI-1.2.1/BAMBI/src/bessel.h | 15 BAMBI-1.2.1/BAMBI/src/vmcos_llik_grad.cpp | 386 +++++++++++++++++++++- BAMBI-1.2.1/BAMBI/src/vmsin_llik_grad.cpp | 493 ++++++++++++++++++++++++++--- BAMBI-1.2.1/BAMBI/src/wnorm2_llik_grad.cpp | 18 + 27 files changed, 1543 insertions(+), 134 deletions(-)
Title: Create Hyperlinks to Biological Databases and Resources
Description: Generate urls and hyperlinks to commonly used biological databases
and resources based on standard identifiers. This is primarily useful when
writing dynamic reports that reference things like gene symbols in text or
tables, allowing you to, for example, convert gene identifiers to hyperlinks
pointing to their entry in the NCBI Gene database. Currently supports NCBI
Gene, PubMed, Gene Ontology, CRAN and Bioconductor.
Author: Aaron Wolen [aut, cre]
Maintainer: Aaron Wolen <aaron@wolen.com>
Diff between biolink versions 0.1.3 dated 2017-12-04 and 0.1.4 dated 2018-04-20
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 7 ++++--- README.md | 1 + tests/testthat/test-links-pubmed.r | 8 ++++---- tests/testthat/test-tags-go.r | 2 +- tests/testthat/test-tags-pubmed.r | 11 +++++------ 7 files changed, 24 insertions(+), 23 deletions(-)
Title: Quick and Dirty Estimates for Wildlife Populations
Description: Provides simple, fast functions for maximum likelihood and Bayesian estimates of wildlife population parameters, suitable for use with simulated data or bootstraps. Early versions were indeed quick and dirty, but optional error-checking routines and meaningful error messages have been added. Includes single and multi-season occupancy, closed capture population estimation, survival, species richness and distance measures.
Author: Mike Meredith
Maintainer: Mike Meredith <mmeredith@wcs.org>
Diff between wiqid versions 0.1.4 dated 2018-04-20 and 0.1.5 dated 2018-04-20
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 3 +++ R/showShinyApp.R | 6 ++++-- man/dippers.Rd | 2 +- 5 files changed, 15 insertions(+), 10 deletions(-)
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <doi:10.1198/106186008X319331> and
Strobl et al. (2007) <doi:10.1186/1471-2105-8-25>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.2-4 dated 2017-12-13 and 1.3-0 dated 2018-04-20
DESCRIPTION | 12 MD5 | 24 - R/Predict.R | 15 R/RandomForest.R | 6 R/Utils.R | 9 R/varimp.R | 722 +++++++++++++++++------------------ inst/NEWS | 11 inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary src/Predict.c | 21 - src/init.c | 4 tests/Examples/party-Ex.Rout.save | 12 tests/RandomForest-regtest.Rout.save | 10 13 files changed, 438 insertions(+), 408 deletions(-)
Title: Exact Variable-Subset Selection in Linear Regression
Description: Exact and approximation algorithms for variable-subset
selection in ordinary linear regression models.
Author: Marc Hofmann [aut, cre],
Cristian Gatu [aut],
Erricos J. Kontoghiorghes [aut],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>),
Martin Moene [cph] (for the GSL Lite library),
Microsoft Corporation [cph] (for the GSL Lite library),
Free Software Foundation, Inc. [cph] (for snippets from the GNU ISO C++
Library)
Maintainer: Marc Hofmann <marc.hofmann@gmail.com>
Diff between lmSubsets versions 0.1 dated 2018-03-22 and 0.2 dated 2018-04-20
lmSubsets-0.1/lmSubsets/src/include/gsl/gsl_algorithm |only lmSubsets-0.1/lmSubsets/src/include/gsl/gsl_assert |only lmSubsets-0.1/lmSubsets/src/include/gsl/gsl_byte |only lmSubsets-0.1/lmSubsets/src/include/gsl/gsl_util |only lmSubsets-0.1/lmSubsets/src/include/gsl/multi_span |only lmSubsets-0.1/lmSubsets/src/include/gsl/span |only lmSubsets-0.1/lmSubsets/src/include/gsl/string_span |only lmSubsets-0.2/lmSubsets/DESCRIPTION | 28 - lmSubsets-0.2/lmSubsets/MD5 | 39 - lmSubsets-0.2/lmSubsets/build/partial.rdb |binary lmSubsets-0.2/lmSubsets/src/Makevars | 2 lmSubsets-0.2/lmSubsets/src/include/cxx11.inc |only lmSubsets-0.2/lmSubsets/src/include/gsl/LICENSE | 35 - lmSubsets-0.2/lmSubsets/src/include/gsl/gsl | 205 ---------- lmSubsets-0.2/lmSubsets/src/include/gsl/gsl-lite.hh |only lmSubsets-0.2/lmSubsets/src/include/mcs/subset/detail/abba.hh | 4 lmSubsets-0.2/lmSubsets/src/include/mcs/subset/detail/aic.hh | 4 lmSubsets-0.2/lmSubsets/src/include/mcs/subset/detail/dca_partial.hh | 2 lmSubsets-0.2/lmSubsets/src/include/mcs/subset/detail/dca_result.hh | 24 - lmSubsets-0.2/lmSubsets/src/include/mcs/subset/detail/dca_state.hh | 19 lmSubsets-0.2/lmSubsets/src/include/mcs/subset/detail/log_lik.hh | 6 lmSubsets-0.2/lmSubsets/src/include/mcs/subset/detail/subset.hh | 4 lmSubsets-0.2/lmSubsets/src/include/mcs/util/algo.hh | 4 lmSubsets-0.2/lmSubsets/src/include/mcs/util/detail/algo.hh | 48 +- lmSubsets-0.2/lmSubsets/src/lmSubsets.cc | 1 25 files changed, 131 insertions(+), 294 deletions(-)
Title: Bayesian Analysis of Small Area Estimation
Description: Provides a variety of methods from Rao (2003, ISBN:0-471-41374-7)
and some other research articles to deal with several specific small area area-
level models in Bayesian framework. Models provided range from the basic Fay-Herriot model to
its improvement such as You-Chapman models, unmatched models, spatial models and so on.
Different types of priors for specific parameters could be chosen to obtain MCMC posterior
draws. The main sampling function is written in C with GSL lab so as to facilitate the
computation. Model internal checking and model comparison criteria are also involved.
Author: Chengchun Shi Developer [aut, cre]
Maintainer: Chengchun Shi Developer <cshi4@ncsu.edu>
Diff between BayesSAE versions 1.0-1 dated 2013-10-28 and 1.0-2 dated 2018-04-20
DESCRIPTION | 19 +++++++++++-------- MD5 | 11 ++++++----- NAMESPACE | 4 ++++ NEWS | 8 +++++++- src/HBsae.cpp | 40 ++++++++++++++++++++-------------------- src/Makevars | 4 ++-- src/init.cpp |only 7 files changed, 50 insertions(+), 36 deletions(-)
Title: Data to Accompany Applied Linear Regression 4th Edition
Description: Datasets to Accompany S. Weisberg (2014, ISBN: 978-1-118-38608-8),
"Applied Linear Regression," 4th edition. Many data files
in this package are included in the `alr3` package as well, so only one of them
should be used.
Author: Sanford Weisberg <sandy@umn.edu>
Maintainer: Sanford Weisberg <sandy@umn.edu>
Diff between alr4 versions 1.0.5 dated 2014-09-26 and 1.0.6 dated 2018-04-20
alr4-1.0.5/alr4/man/alr4-package.Rd |only alr4-1.0.6/alr4/DESCRIPTION | 26 +++---- alr4-1.0.6/alr4/MD5 | 19 ++--- alr4-1.0.6/alr4/NAMESPACE | 16 ++-- alr4-1.0.6/alr4/NEWS | 10 +- alr4-1.0.6/alr4/R/alr4.R | 133 +++++------------------------------- alr4-1.0.6/alr4/man/BigMac2003.Rd | 104 ++++++++++++++-------------- alr4-1.0.6/alr4/man/UBSprices.Rd | 74 ++++++++++---------- alr4-1.0.6/alr4/man/UN11.Rd | 2 alr4-1.0.6/alr4/man/florida.Rd | 53 ++++++-------- alr4-1.0.6/alr4/man/salary.Rd | 74 ++++++++++---------- 11 files changed, 206 insertions(+), 305 deletions(-)
Title: Estimation of the Relative Importance of Factors Affecting
Species Distribution Based on Stability Concept
Description: From output files obtained from the software 'ModestR', the relative contribution of factors to explain species distribution is depicted using several plots. A global geographic raster file for each environmental variable may be also obtained with the mean relative contribution, considering all species present in each raster cell, of the factor to explain species distribution. Finally, for each variable it is also possible to compare the frequencies of any variable obtained in the cells where the species is present with the frequencies of the same variable in the cells of the extent.
Author: Cįstor Guisande Gonzįlez
Maintainer: Cįstor Guisande Gonzįlez <castor@uvigo.es>
Diff between SPEDInstabR versions 1.5 dated 2017-09-06 and 1.6 dated 2018-04-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/Rmap.R | 5 +++-- man/Rmap.Rd | 13 ++++++------- 4 files changed, 15 insertions(+), 15 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.0-0 dated 2018-03-08 and 1.0-1 dated 2018-04-20
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/loglik.R | 2 ++ R/methods.R | 10 +++++++--- R/mlt.R | 16 ++++++++++++++++ build/partial.rdb |binary inst/NEWS.Rd | 10 ++++++++++ man/mlt-methods.Rd | 4 ++-- 8 files changed, 48 insertions(+), 16 deletions(-)
Title: Interface to the 'g:Profiler' Toolkit
Description: Functional enrichment analysis, gene identifier conversion and
mapping homologous genes across related organisms via the 'g:Profiler' toolkit
(<https://biit.cs.ut.ee/gprofiler/>).
Author: Juri Reimand <juri.reimand@ut.ee>, Raivo Kolde
<rkolde@gmail.com>, Tambet Arak <tambet.arak@gmail.com>
Maintainer: Ivan Kuzmin <ivan.kuzmin@ut.ee>
Diff between gProfileR versions 0.6.5 dated 2018-04-13 and 0.6.6 dated 2018-04-20
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 4 ++-- 3 files changed, 10 insertions(+), 6 deletions(-)
Title: Modeling Animal Movement with Continuous-Time Discrete-Space
Markov Chains
Description: Software to facilitates taking movement data in xyt format and pairing it with raster covariates within a continuous time Markov chain (CTMC) framework. As described in Hanks et al. (2015) <DOI:10.1214/14-AOAS803> , this allows flexible modeling of movement in response to covariates (or covariate gradients) with model fitting possible within a Poisson GLM framework.
Author: Ephraim Hanks
Maintainer: Ephraim Hanks <hanks@psu.edu>
Diff between ctmcmove versions 1.2.8 dated 2017-04-04 and 1.2.9 dated 2018-04-20
ctmcmove-1.2.8/ctmcmove/R/mcmc.fmove.R |only ctmcmove-1.2.8/ctmcmove/build |only ctmcmove-1.2.9/ctmcmove/DESCRIPTION | 8 ++++---- ctmcmove-1.2.9/ctmcmove/MD5 | 5 ++--- ctmcmove-1.2.9/ctmcmove/R/mcmc.fmove.r |only 5 files changed, 6 insertions(+), 7 deletions(-)
Title: Relevant Component Analysis for Supervised Distance Metric
Learning
Description: Relevant Component Analysis (RCA) tries to find a linear
transformation of the feature space such that the effect of irrelevant
variability is reduced in the transformed space.
Author: Nan Xiao [aut, cre] (<https://orcid.org/0000-0002-0250-5673>)
Maintainer: Nan Xiao <me@nanx.me>
Diff between RECA versions 1.3 dated 2016-11-12 and 1.5 dated 2018-04-20
DESCRIPTION | 19 ++++--- LICENSE |only MD5 | 13 ++--- R/RECA-package.R | 4 - R/rca.R | 127 +++++++++++++++++++++------------------------------- README.md | 16 ++++-- man/RECA-package.Rd | 5 -- man/rca.Rd | 127 ++++++++++++++++++++-------------------------------- 8 files changed, 135 insertions(+), 176 deletions(-)
Title: Simulation and Reconstruction of PET Images
Description: Implementation of different analytic/direct and
iterative reconstruction methods of radon transformed data
such as PET data. It also offer the possibility to simulate PET data.
Author: Joern Schulz <jschulz78@web.de>,
Peter Toft <pto@imm.dtu.dk>,
Jesper James Jensen <jjj@oedan.dk>,
Peter Philipsen <pap@imm.dtu.dk>
Maintainer: Joern Schulz <jschulz78@web.de>
Diff between PET versions 0.5.0 dated 2018-02-05 and 0.5.1 dated 2018-04-20
DESCRIPTION | 21 +++++++++++---------- MD5 | 6 +++--- inst/COPYRIGHT | 2 +- src/amatrix.c | 3 ++- 4 files changed, 17 insertions(+), 15 deletions(-)
Title: Multinomial Logit Models
Description: Maximum Likelihood estimation of random utility discrete choice models (logit and probit).
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between mlogit versions 0.2-4 dated 2013-12-27 and 0.3-0 dated 2018-04-20
mlogit-0.2-4/mlogit/inst/doc/Exercises.R |only mlogit-0.2-4/mlogit/inst/doc/mlogit.R |only mlogit-0.3-0/mlogit/DESCRIPTION | 22 mlogit-0.3-0/mlogit/MD5 | 104 - mlogit-0.3-0/mlogit/NAMESPACE | 12 mlogit-0.3-0/mlogit/NEWS | 46 mlogit-0.3-0/mlogit/R/logitform.R | 218 +-- mlogit-0.3-0/mlogit/R/mlogit.R | 1071 +++++++++-------- mlogit-0.3-0/mlogit/R/mlogit.data.R | 262 ++-- mlogit-0.3-0/mlogit/R/mlogit.lnl.R | 1726 ++++++++++++++++++---------- mlogit-0.3-0/mlogit/R/mlogit.methods.R | 606 ++++++--- mlogit-0.3-0/mlogit/R/mlogit.rpar.R | 1004 +++++++++------- mlogit-0.3-0/mlogit/R/mlogit.tools.R | 456 +++---- mlogit-0.3-0/mlogit/R/threetests.R | 559 ++++----- mlogit-0.3-0/mlogit/build/vignette.rds |binary mlogit-0.3-0/mlogit/data/Beef.rda |binary mlogit-0.3-0/mlogit/data/Car.rda |binary mlogit-0.3-0/mlogit/data/Catsup.rda |binary mlogit-0.3-0/mlogit/data/Cracker.rda |binary mlogit-0.3-0/mlogit/data/Electricity.rda |binary mlogit-0.3-0/mlogit/data/Examples.rda |binary mlogit-0.3-0/mlogit/data/Fishing.rda |binary mlogit-0.3-0/mlogit/data/Game.rda |binary mlogit-0.3-0/mlogit/data/Game2.rda |binary mlogit-0.3-0/mlogit/data/HC.rda |binary mlogit-0.3-0/mlogit/data/Heating.rda |binary mlogit-0.3-0/mlogit/data/JapaneseFDI.rda |only mlogit-0.3-0/mlogit/data/Ketchup.rda |binary mlogit-0.3-0/mlogit/data/MobilePhones.rda |binary mlogit-0.3-0/mlogit/data/Mode.rda |binary mlogit-0.3-0/mlogit/data/ModeCanada.rda |binary mlogit-0.3-0/mlogit/data/NOx.rda |only mlogit-0.3-0/mlogit/data/RiskyTransport.rda |only mlogit-0.3-0/mlogit/data/Telephone.rda |binary mlogit-0.3-0/mlogit/data/TollRoad.rda |binary mlogit-0.3-0/mlogit/data/Train.rda |binary mlogit-0.3-0/mlogit/data/Tuna.rda |binary mlogit-0.3-0/mlogit/data/Yogurt.rda |binary mlogit-0.3-0/mlogit/data/datalist | 3 mlogit-0.3-0/mlogit/inst/doc/Exercises.pdf |binary mlogit-0.3-0/mlogit/inst/doc/Exercises.rnw | 147 +- mlogit-0.3-0/mlogit/inst/doc/mlogit.pdf |binary mlogit-0.3-0/mlogit/inst/doc/mlogit.rnw | 53 mlogit-0.3-0/mlogit/inst/doc/mlogit2.pdf |only mlogit-0.3-0/mlogit/inst/doc/mlogit2.rnw |only mlogit-0.3-0/mlogit/man/JapaneseFDI.Rd |only mlogit-0.3-0/mlogit/man/ModeCanada.Rd | 6 mlogit-0.3-0/mlogit/man/NOx.Rd |only mlogit-0.3-0/mlogit/man/RiskyTransport.Rd |only mlogit-0.3-0/mlogit/man/Train.Rd | 20 mlogit-0.3-0/mlogit/man/logsum.Rd |only mlogit-0.3-0/mlogit/man/mlogit.Rd | 15 mlogit-0.3-0/mlogit/man/mlogit.data.Rd | 28 mlogit-0.3-0/mlogit/tests/threetests.R | 4 mlogit-0.3-0/mlogit/vignettes/Exercises.rnw | 147 +- mlogit-0.3-0/mlogit/vignettes/bibmlogit.bib | 293 ++++ mlogit-0.3-0/mlogit/vignettes/mlogit.rnw | 53 mlogit-0.3-0/mlogit/vignettes/mlogit.sty | 4 mlogit-0.3-0/mlogit/vignettes/mlogit2.rnw |only 59 files changed, 4152 insertions(+), 2707 deletions(-)
Title: Data Analysis Functions for 'SBpipe' Package
Description: Provides an API for analysing repetitive parameter estimations and simulations of
mathematical models. Examples of mathematical models are Ordinary Differential equations (ODEs)
or Stochastic Differential Equations (SDEs) models. Among the analyses for parameter
estimation 'sbpiper' calculates statistics and generates plots for parameter density, PCA of the best
fits, parameter profile likelihood estimations (PLEs), and 2D parameter PLEs. These results can
be generated using all or a subset of the best computed parameter sets. Among the analyses
for model simulation 'sbpiper' calculates statistics and generates plots for deterministic
and stochastic time courses via cartesian and heatmap plots. Plots for the scan of one or two model
parameters can also be generated. This package is primarily used by the software 'SBpipe'.
Citation: Dalle Pezze P, Le NovĆØre N. SBpipe: a collection of pipelines for automating
repetitive simulation and analysis tasks. BMC Systems Biology. 2017;11:46. <doi:10.1186/s12918-017-0423-3>.
Author: Piero Dalle Pezze [aut, cre, cph]
(<https://orcid.org/0000-0003-1695-6763>)
Maintainer: Piero Dalle Pezze <piero.dallepezze@gmail.com>
Diff between sbpiper versions 1.6.0 dated 2018-03-22 and 1.7.0 dated 2018-04-20
DESCRIPTION | 14 +++++------- MD5 | 6 ++--- R/sbpiper_pe.r | 10 +++++---- README.md | 62 ++++++++++++++++++++++++++------------------------------- 4 files changed, 44 insertions(+), 48 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc]
(<https://orcid.org/0000-0002-0734-2199>),
Christoph Burow [aut, trl, dtc]
(<https://orcid.org/0000-0002-5023-4046>),
Michael Dietze [aut] (<https://orcid.org/0000-0001-6063-1726>),
Margret C. Fuchs [aut],
Christoph Schmidt [aut] (<https://orcid.org/0000-0002-2309-3209>),
Manfred Fischer [aut, trl],
Johannes Friedrich [aut],
Norbert Mercier [ctb],
Rachel K. Smedley [ctb] (<https://orcid.org/0000-0001-7773-5193>),
Claire Christophe [ctb],
Antoine Zink [ctb],
Julie Durcan [ctb] (<https://orcid.org/0000-0001-8724-8022>),
Georgina E. King [ctb, dtc] (<https://orcid.org/0000-0003-1059-8192>),
Anne Philippe [ctb],
Guillaume Guerin [ctb] (<https://orcid.org/0000-0001-6298-5579>),
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Diff between Luminescence versions 0.8.3 dated 2018-04-19 and 0.8.4 dated 2018-04-20
DESCRIPTION | 6 MD5 | 236 ++++++++++++++++----------------- NEWS | 7 R/Luminescence-package.R | 7 R/analyse_Al2O3C_Measurement.R | 2 inst/NEWS.Rd | 14 + man/Analyse_SAR.OSLdata.Rd | 2 man/CW2pHMi.Rd | 2 man/CW2pLM.Rd | 2 man/CW2pLMi.Rd | 2 man/CW2pPMi.Rd | 2 man/GitHub-API.Rd | 2 man/Luminescence-package.Rd | 7 man/PSL2Risoe.BINfileData.Rd | 2 man/RLum-class.Rd | 2 man/RLum.Analysis-class.Rd | 2 man/RLum.Data.Curve-class.Rd | 2 man/RLum.Data.Image-class.Rd | 2 man/RLum.Data.Spectrum-class.Rd | 2 man/RLum.Results-class.Rd | 2 man/Risoe.BINfileData-class.Rd | 2 man/Risoe.BINfileData2RLum.Analysis.Rd | 2 man/Second2Gray.Rd | 2 man/analyse_Al2O3C_CrossTalk.Rd | 2 man/analyse_Al2O3C_ITC.Rd | 2 man/analyse_Al2O3C_Measurement.Rd | 6 man/analyse_FadingMeasurement.Rd | 2 man/analyse_IRSAR.RF.Rd | 2 man/analyse_SAR.CWOSL.Rd | 2 man/analyse_SAR.TL.Rd | 2 man/analyse_baSAR.Rd | 2 man/analyse_pIRIRSequence.Rd | 2 man/analyse_portableOSL.Rd | 2 man/app_RLum.Rd | 2 man/apply_CosmicRayRemoval.Rd | 2 man/apply_EfficiencyCorrection.Rd | 2 man/bin_RLum.Data.Rd | 2 man/calc_AliquotSize.Rd | 2 man/calc_AverageDose.Rd | 2 man/calc_CentralDose.Rd | 2 man/calc_CommonDose.Rd | 2 man/calc_CosmicDoseRate.Rd | 2 man/calc_FadingCorr.Rd | 2 man/calc_FastRatio.Rd | 2 man/calc_FiniteMixture.Rd | 2 man/calc_FuchsLang2001.Rd | 2 man/calc_HomogeneityTest.Rd | 2 man/calc_Huntley2006.Rd | 2 man/calc_IEU.Rd | 2 man/calc_Kars2008.Rd | 2 man/calc_Lamothe2003.Rd | 2 man/calc_MaxDose.Rd | 2 man/calc_MinDose.Rd | 2 man/calc_OSLLxTxRatio.Rd | 2 man/calc_SourceDoseRate.Rd | 2 man/calc_Statistics.Rd | 2 man/calc_TLLxTxRatio.Rd | 2 man/calc_ThermalLifetime.Rd | 2 man/calc_WodaFuchs2008.Rd | 2 man/calc_gSGC.Rd | 2 man/convert_Activity2Concentration.Rd | 2 man/convert_BIN2CSV.Rd | 2 man/convert_Daybreak2CSV.Rd | 2 man/convert_PSL2CSV.Rd | 2 man/convert_RLum2Risoe.BINfileData.Rd | 2 man/convert_XSYG2CSV.Rd | 2 man/extract_IrradiationTimes.Rd | 2 man/fit_CWCurve.Rd | 2 man/fit_LMCurve.Rd | 2 man/fit_SurfaceExposure.Rd | 2 man/get_Layout.Rd | 2 man/get_Quote.Rd | 2 man/get_RLum.Rd | 2 man/get_Risoe.BINfileData.Rd | 2 man/get_rightAnswer.Rd | 2 man/length_RLum.Rd | 2 man/merge_RLum.Analysis.Rd | 2 man/merge_RLum.Data.Curve.Rd | 2 man/merge_RLum.Rd | 2 man/merge_RLum.Results.Rd | 2 man/merge_Risoe.BINfileData.Rd | 2 man/model_LuminescenceSignals.Rd | 2 man/names_RLum.Rd | 2 man/plot_AbanicoPlot.Rd | 2 man/plot_DRTResults.Rd | 2 man/plot_DetPlot.Rd | 2 man/plot_FilterCombinations.Rd | 2 man/plot_GrowthCurve.Rd | 2 man/plot_Histogram.Rd | 2 man/plot_KDE.Rd | 2 man/plot_NRt.Rd | 2 man/plot_RLum.Analysis.Rd | 2 man/plot_RLum.Data.Curve.Rd | 2 man/plot_RLum.Data.Image.Rd | 2 man/plot_RLum.Data.Spectrum.Rd | 2 man/plot_RLum.Rd | 2 man/plot_RLum.Results.Rd | 2 man/plot_RadialPlot.Rd | 2 man/plot_Risoe.BINfileData.Rd | 2 man/plot_ViolinPlot.Rd | 2 man/read_BIN2R.Rd | 2 man/read_Daybreak2R.Rd | 2 man/read_PSL2R.Rd | 2 man/read_SPE2R.Rd | 2 man/read_XSYG2R.Rd | 2 man/replicate_RLum.Rd | 2 man/report_RLum.Rd | 2 man/sTeve.Rd | 2 man/set_RLum.Rd | 2 man/set_Risoe.BINfileData.Rd | 2 man/smooth_RLum.Rd | 2 man/structure_RLum.Rd | 2 man/template_DRAC.Rd | 2 man/tune_Data.Rd | 2 man/use_DRAC.Rd | 2 man/verify_SingleGrainData.Rd | 2 man/write_R2BIN.Rd | 2 man/write_RLum2CSV.Rd | 2 tests/testthat/test_app_RLum.R | 13 + 119 files changed, 280 insertions(+), 238 deletions(-)
Title: Bayesian Nonparametric Chinese Restaurant Process Clustering
with Entropy
Description: Chinese restaurant process [Pitman (1995) <doi:10.1007/BF01213386>] is used in order to compose Dirichlet process [Ferguson (1973) <doi:10.1214/aos/1176342360>]. The clustering which uses Chinese restaurant process does not need to decide the number of clusters in advance. This algorithm automatically adjusts it. And this package calculates the ambiguity of clusters as entropy [Yngvason (1999) <doi:10.1016/S0370-1573(98)00082-9>].
Author: Masashi Okada [aut, cre]
Maintainer: Masashi Okada <okadaalgorithm@gmail.com>
Diff between CRPClustering versions 1.0 dated 2018-01-15 and 1.1 dated 2018-04-20
CRPClustering-1.0/CRPClustering/inst/doc/CRPClustering.pdf |only CRPClustering-1.0/CRPClustering/vignettes/image2.png |only CRPClustering-1.1/CRPClustering/DESCRIPTION | 13 CRPClustering-1.1/CRPClustering/MD5 | 24 - CRPClustering-1.1/CRPClustering/NAMESPACE | 6 CRPClustering-1.1/CRPClustering/R/CRPClustering.R | 169 ++++++++-- CRPClustering-1.1/CRPClustering/inst/doc/CRPClustering-vignette.R | 4 CRPClustering-1.1/CRPClustering/inst/doc/CRPClustering-vignette.Rmd | 56 +-- CRPClustering-1.1/CRPClustering/inst/doc/CRPClustering-vignette.pdf |binary CRPClustering-1.1/CRPClustering/man/crp_gibbs.Rd | 20 - CRPClustering-1.1/CRPClustering/man/crp_graph_2d.Rd | 7 CRPClustering-1.1/CRPClustering/vignettes/CRPClustering-vignette.Rmd | 56 +-- CRPClustering-1.1/CRPClustering/vignettes/image.png |only CRPClustering-1.1/CRPClustering/vignettes/image_1.png |only CRPClustering-1.1/CRPClustering/vignettes/image_2.png |only CRPClustering-1.1/CRPClustering/vignettes/image_3.png |only 16 files changed, 248 insertions(+), 107 deletions(-)
Title: Managing, Querying and Analyzing Tokenized Text
Description: Provides text analysis in R, focusing on the use of a tokenized text format. In this format, the positions of tokens are maintained, and each token can be annotated (e.g., part-of-speech tags, dependency relations).
Prominent features include advanced Lucene-like querying for specific tokens or contexts (e.g., documents, sentences),
similarity statistics for words and documents, exporting to DTM for compatibility with many text analysis packages,
and the possibility to reconstruct original text from tokens to facilitate interpretation.
Author: Kasper Welbers and Wouter van Atteveldt
Maintainer: Kasper Welbers <kasperwelbers@gmail.com>
Diff between corpustools versions 0.3.1 dated 2017-12-13 and 0.3.3 dated 2018-04-20
corpustools-0.3.1/corpustools/src/hit_ids.cpp |only corpustools-0.3.1/corpustools/tests/testthat/Rplots.pdf |only corpustools-0.3.3/corpustools/DESCRIPTION | 14 corpustools-0.3.3/corpustools/MD5 | 161 ++-- corpustools-0.3.3/corpustools/NAMESPACE | 4 corpustools-0.3.3/corpustools/R/1_tcorpus.r | 345 +++++----- corpustools-0.3.3/corpustools/R/RcppExports.R | 32 corpustools-0.3.3/corpustools/R/collocations.r | 2 corpustools-0.3.3/corpustools/R/compare_corpora.r | 10 corpustools-0.3.3/corpustools/R/compare_documents.r | 91 -- corpustools-0.3.3/corpustools/R/compare_documents_dtm.r |only corpustools-0.3.3/corpustools/R/create_tcorpus.r | 54 + corpustools-0.3.3/corpustools/R/document_term_matrix.r | 54 + corpustools-0.3.3/corpustools/R/documentation_methods.r | 40 - corpustools-0.3.3/corpustools/R/feature_associations.r | 5 corpustools-0.3.3/corpustools/R/feature_information.r | 7 corpustools-0.3.3/corpustools/R/kwic.r | 3 corpustools-0.3.3/corpustools/R/lda.r | 9 corpustools-0.3.3/corpustools/R/merge_tcorpus.r | 6 corpustools-0.3.3/corpustools/R/plot_words.r | 6 corpustools-0.3.3/corpustools/R/preprocessing.r | 101 ++ corpustools-0.3.3/corpustools/R/print_text.r | 3 corpustools-0.3.3/corpustools/R/resources.r |only corpustools-0.3.3/corpustools/R/search.r | 22 corpustools-0.3.3/corpustools/R/search_contexts.r | 19 corpustools-0.3.3/corpustools/R/search_features.r | 26 corpustools-0.3.3/corpustools/R/semnet.r | 14 corpustools-0.3.3/corpustools/R/semnet_backbone.r | 2 corpustools-0.3.3/corpustools/R/smoothing.r | 2 corpustools-0.3.3/corpustools/R/tokenize.r | 48 + corpustools-0.3.3/corpustools/R/udpipe.r |only corpustools-0.3.3/corpustools/R/util.r | 25 corpustools-0.3.3/corpustools/README.md | 8 corpustools-0.3.3/corpustools/man/compare_documents_dtm.Rd |only corpustools-0.3.3/corpustools/man/create_tcorpus.Rd | 26 corpustools-0.3.3/corpustools/man/list_resources.Rd |only corpustools-0.3.3/corpustools/man/preprocess_tokens.Rd | 16 corpustools-0.3.3/corpustools/man/require_package.Rd |only corpustools-0.3.3/corpustools/man/resources_path.Rd |only corpustools-0.3.3/corpustools/man/set_resources_path.Rd |only corpustools-0.3.3/corpustools/man/tCorpus-cash-code_features.Rd | 9 corpustools-0.3.3/corpustools/man/tCorpus-cash-compare_corpus.Rd | 6 corpustools-0.3.3/corpustools/man/tCorpus-cash-compare_documents.Rd | 6 corpustools-0.3.3/corpustools/man/tCorpus-cash-compare_subset.Rd | 6 corpustools-0.3.3/corpustools/man/tCorpus-cash-context.Rd | 4 corpustools-0.3.3/corpustools/man/tCorpus-cash-deduplicate.Rd | 8 corpustools-0.3.3/corpustools/man/tCorpus-cash-delete_columns.Rd | 6 corpustools-0.3.3/corpustools/man/tCorpus-cash-dtm.Rd | 21 corpustools-0.3.3/corpustools/man/tCorpus-cash-feature_associations.Rd | 6 corpustools-0.3.3/corpustools/man/tCorpus-cash-feature_stats.Rd | 5 corpustools-0.3.3/corpustools/man/tCorpus-cash-feature_subset.Rd | 5 corpustools-0.3.3/corpustools/man/tCorpus-cash-get.Rd | 5 corpustools-0.3.3/corpustools/man/tCorpus-cash-kwic.Rd | 5 corpustools-0.3.3/corpustools/man/tCorpus-cash-lda_fit.Rd | 5 corpustools-0.3.3/corpustools/man/tCorpus-cash-preprocess.Rd | 16 corpustools-0.3.3/corpustools/man/tCorpus-cash-read_text.Rd | 6 corpustools-0.3.3/corpustools/man/tCorpus-cash-search_contexts.Rd | 14 corpustools-0.3.3/corpustools/man/tCorpus-cash-search_features.Rd | 19 corpustools-0.3.3/corpustools/man/tCorpus-cash-search_recode.Rd | 5 corpustools-0.3.3/corpustools/man/tCorpus-cash-semnet.Rd | 5 corpustools-0.3.3/corpustools/man/tCorpus-cash-semnet_window.Rd | 5 corpustools-0.3.3/corpustools/man/tCorpus-cash-set.Rd | 4 corpustools-0.3.3/corpustools/man/tCorpus-cash-set_levels.Rd | 4 corpustools-0.3.3/corpustools/man/tCorpus-cash-set_name.Rd | 6 corpustools-0.3.3/corpustools/man/tCorpus-cash-set_special.Rd |only corpustools-0.3.3/corpustools/man/tCorpus-cash-subset.Rd | 5 corpustools-0.3.3/corpustools/man/tCorpus-cash-subset_query.Rd | 5 corpustools-0.3.3/corpustools/man/tCorpus-cash-top_features.Rd | 6 corpustools-0.3.3/corpustools/man/tokens_to_tcorpus.Rd | 16 corpustools-0.3.3/corpustools/src/QueryIter.cpp |only corpustools-0.3.3/corpustools/src/QueryIter.h |only corpustools-0.3.3/corpustools/src/RcppExports.cpp | 96 +- corpustools-0.3.3/corpustools/src/collapse_terms.cpp |only corpustools-0.3.3/corpustools/src/fast_factor.cpp | 2 corpustools-0.3.3/corpustools/src/hit_ids_and.cpp |only corpustools-0.3.3/corpustools/src/hit_ids_proximity.cpp |only corpustools-0.3.3/corpustools/src/hit_ids_sequence.cpp |only corpustools-0.3.3/corpustools/src/ngrams.cpp | 7 corpustools-0.3.3/corpustools/src/parse_query.cpp | 86 -- corpustools-0.3.3/corpustools/tests/testthat.r | 5 corpustools-0.3.3/corpustools/tests/testthat/test_advanced_search.r | 9 corpustools-0.3.3/corpustools/tests/testthat/test_compare_documents.r | 43 - corpustools-0.3.3/corpustools/tests/testthat/test_corpus_comparison.r | 9 corpustools-0.3.3/corpustools/tests/testthat/test_feature_associations.r | 10 corpustools-0.3.3/corpustools/tests/testthat/test_preprocessing.r | 11 corpustools-0.3.3/corpustools/tests/testthat/test_search_contexts.r | 10 corpustools-0.3.3/corpustools/tests/testthat/test_search_features.r | 11 corpustools-0.3.3/corpustools/tests/testthat/test_semnet.r | 10 corpustools-0.3.3/corpustools/tests/testthat/test_tcorpus.r | 11 corpustools-0.3.3/corpustools/tests/testthat/test_topicmodels.r | 10 90 files changed, 944 insertions(+), 754 deletions(-)
Title: Easy Condition Handling
Description: A friendlier condition handler, inspired by 'purrr' mappers and
based on 'rlang'.'attempt' extends and facilitates condition handling by
providing a consistent grammar, and provides a set of easy to use functions
for common tests and conditions. 'attempt' only depends on 'rlang', and
focuses on speed, so it can be easily integrated in other functions and
used in data analysis.
Author: Colin Fay [aut, cre]
Maintainer: Colin Fay <contact@colinfay.me>
Diff between attempt versions 0.2.0 dated 2018-01-31 and 0.2.1 dated 2018-04-20
DESCRIPTION | 6 +++--- LICENSE | 2 +- MD5 | 34 +++++++++++++++++----------------- NAMESPACE | 2 ++ NEWS.md | 5 +++++ R/adverbs.R | 28 +++++++++++++++++++++++++++- R/try_catch.R | 19 ++++++++----------- README.md | 26 +++++++++++++++----------- build/vignette.rds |binary inst/doc/a_intro_attempt.html | 4 ++-- inst/doc/b_try_catch.Rmd | 1 - inst/doc/b_try_catch.html | 6 +++--- inst/doc/c_adverbs.html | 4 ++-- inst/doc/d_if.html | 8 ++++---- inst/doc/e_conditions.html | 4 ++-- man/messagefunctions.Rd | 11 +++++++++-- tests/testthat/test-trycatch.R | 20 +++++++++++++++++--- vignettes/b_try_catch.Rmd | 1 - 18 files changed, 117 insertions(+), 64 deletions(-)
Title: Micro-Electro Array (MEA) Analysis
Description: Core algorithms for MEA spike train analysis, feature extraction, statistical analysis and plotting of multiple MEA recordings with multiple genotypes and treatments, published by Gelfman et al (2017) at <https://github.com/igm-team/meaRtools/>.
Author: Quanli Wang [aut, ctb],
Sahar Gelfman [aut, ctb, cre],
Diana Hall [aut, ctb],
Ryan Dhindsa [aut, ctb],
Matt Halvorsen [aut, ctb],
Ellese Cotterill [aut, ctb],
Tom Edinburgh [aut, ctb],
Stephen J. Eglen [aut, ctb, ths]
Maintainer: Sahar Gelfman <sahar.gelfman@columbia.edu>
Diff between meaRtools versions 1.0.2 dated 2017-12-10 and 1.0.3 dated 2018-04-20
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- R/burstDistributions_functions.R | 2 +- R/make_raster.R | 1 + inst/doc/meaRtoolsGeneralUsage.R | 25 ++++++++++++++----------- inst/doc/meaRtoolsGeneralUsage.Rmd | 25 ++++++++++++++----------- inst/doc/meaRtoolsGeneralUsage.html | 31 +++++++++++++++++++------------ inst/doc/sttc.html | 10 +++++----- man/calc_burst_distributions.Rd | 2 +- man/get_experimental_log_file.Rd | 9 +++++---- man/permute_features_and_plot.Rd | 3 ++- man/read_spikelist.Rd | 5 +++-- man/write_plate_summary_for_bursts.Rd | 7 +++++-- man/write_plate_summary_for_spikes.Rd | 2 +- vignettes/meaRtoolsGeneralUsage.Rmd | 25 ++++++++++++++----------- 15 files changed, 103 insertions(+), 80 deletions(-)
Title: Voting Systems, Instant-Runoff Voting, Borda Method, Various
Condorcet Methods
Description: Various methods to count ballots in voting systems are provided.
Functions to check validity of ballots are also provided to ensure flexibility.
Author: Jiang Wu [aut, cre] (from Capital Normal University)
Maintainer: Jiang Wu <textidea@sina.com>
Diff between votesys versions 0.1.0 dated 2018-03-15 and 0.1.1 dated 2018-04-20
DESCRIPTION | 29 ++++--------------- MD5 | 70 ++++++++++++++++++++++++---------------------- NAMESPACE | 5 +++ NEWS | 11 +++++++ R/UsEIncdc.R | 46 ++++++++++++++++++++++++++++++ R/as_complete.R |only R/borda_method.R | 18 +++++++---- R/cdc_copeland.R | 15 +++++++-- R/cdc_dodgson.R | 43 ++++++++++++++-------------- R/cdc_kemenyyoung.R |only R/cdc_minmax.R | 9 ++++- R/cdc_rankedpairs.R | 32 +++++++-------------- R/cdc_schulze.R | 32 +++++++++++++-------- R/cdc_simple.R | 4 +- R/check_dup_wrong.R | 18 +++++------ R/create_vote.R | 42 +++++++++++++-------------- R/dowdall_method.R | 9 ++++- R/irv_method.R | 7 ++++ R/list2ballot.R | 73 +++++++++++++++++++++++++++++++++--------------- R/package-votesys.R | 40 +++----------------------- R/plurality_method.R | 10 +++--- R/star_rating.R |only man/as_complete.Rd |only man/borda_method.Rd | 19 +++++++----- man/cdc_copeland.Rd | 11 +++++-- man/cdc_dodgson.Rd | 39 +++++++++++++------------ man/cdc_kemenyyoung.Rd |only man/cdc_minmax.Rd | 9 ++++- man/cdc_rankedpairs.Rd | 30 +++++++------------ man/cdc_schulze.Rd | 30 ++++++++++++------- man/cdc_simple.Rd | 4 +- man/check_dup_wrong.Rd | 18 +++++------ man/create_vote.Rd | 40 +++++++++++++------------- man/dowdall_method.Rd | 7 +++- man/irv_method.Rd | 7 ++++ man/list2ballot.Rd | 34 ++++++++++++++++------ man/plurality_method.Rd | 10 +++--- man/star_rating.Rd |only man/votesys-package.Rd | 40 +++----------------------- 39 files changed, 456 insertions(+), 355 deletions(-)
Title: Semantic UI Support for Shiny
Description: Creating a great user interface for your Shiny apps
can be a hassle, especially if you want to work purely in R
and don't want to use, for instance HTML templates. This
package adds support for a powerful UI library Semantic UI -
<http://semantic-ui.com/>. It also supports universal UI input
binding that works with various DOM elements.
Author: Filip Stachura [aut, cre]
Maintainer: Filip Stachura <filip@appsilondatascience.com>
Diff between shiny.semantic versions 0.1.2 dated 2018-04-10 and 0.2.0 dated 2018-04-20
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/htmlwidgets/uirender.js | 6 ++++-- inst/htmlwidgets/uirender.yaml | 5 ----- inst/prepare_package_cran.sh | 4 +++- 5 files changed, 14 insertions(+), 15 deletions(-)
More information about shiny.semantic at CRAN
Permanent link
Title: Multivariate Normality Tests
Description: Performs multivariate normality tests and graphical approaches and
implements multivariate outlier detection and univariate normality of marginal
distributions through plots and tests (Korkmaz et al, (2014), <https://journal.r-project.org/archive/2014-2/korkmaz-goksuluk-zararsiz.pdf>).
Author: Selcuk Korkmaz [aut, cre],
Dincer Goksuluk [aut],
Gokmen Zararsiz [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between MVN versions 5.1 dated 2018-03-22 and 5.2 dated 2018-04-20
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/mvn.R | 37 +++++++++++++++++++------------------ inst/doc/MVN.R | 11 ++++++----- inst/doc/MVN.Rnw | 13 +++++++------ inst/doc/MVN.pdf |binary man/mvn.Rd | 14 +++++++++----- vignettes/MVN.Rnw | 13 +++++++------ 8 files changed, 59 insertions(+), 51 deletions(-)
Title: Multiplicative Interaction Models Diagnostics and Visualization
Description: Performs diagnostic tests of multiplicative interaction models and plots non-linear marginal effects of a treatment on an outcome across different values of a moderator.
Author: Jens Hainmueller, Jonathan Mummolo and Yiqing Xu
Maintainer: Yiqing Xu <yiqingxu@ucsd.edu>
Diff between interflex versions 1.0.3 dated 2017-03-05 and 1.0.4 dated 2018-04-20
DESCRIPTION | 11 - MD5 | 18 +- NAMESPACE | 3 R/interflex.R | 344 +++++++++++++++++++++++++++++------------------ README.md | 10 - man/inter.binning.Rd | 6 man/inter.gam.Rd | 2 man/inter.kernel.Rd | 2 man/inter.raw.Rd | 2 man/interflex-package.Rd | 6 10 files changed, 245 insertions(+), 159 deletions(-)
Title: Safety Assessment in Agricultural Field Trials
Description: Collection of functions, data sets and code examples
for evaluations of field trials with the objective of equivalence assessment.
Author: Frank Schaarschmidt
Maintainer: Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
Diff between BSagri versions 0.1-8 dated 2013-11-21 and 0.1-10 dated 2018-04-20
DESCRIPTION | 13 +++++------ MD5 | 8 +++---- NAMESPACE | 17 +++++++++++++- man/BOOTSimpson.Rd | 3 +- man/summary.simplesimint.Rd | 50 -------------------------------------------- 5 files changed, 27 insertions(+), 64 deletions(-)
Title: Weighted Rasch Modeling and Extensions using Conditional Maximum
Likelihood
Description: Rasch model and extensions for survey data, using Conditional Maximum likelihood (CML). Carlo Cafiero, Sara Viviani, Mark Nord (2018) <doi:10.1016/j.measurement.2017.10.065>.
Author: Carlo Cafiero, Sara Viviani, Mark Nord
Maintainer: Sara Viviani <sara.viviani@yahoo.it>
Diff between RM.weights versions 1.0 dated 2016-07-15 and 2.0 dated 2018-04-20
DESCRIPTION | 17 MD5 | 26 R/ICC.fun.R | 2 R/PC.w.R | 1848 +++++++++++++++++++++++----------------------- R/RM.w.R | 1697 +++++++++++++++++++++--------------------- R/equating.fun.r | 282 ++++--- man/EWaldtest.Rd | 120 +- man/ICC.fun.Rd | 77 - man/PC.w.Rd | 132 +-- man/RM.w.Rd | 215 ++--- man/RM.weights-package.Rd | 80 - man/equating.fun.Rd | 128 +-- man/prob.assign.Rd | 168 ++-- man/tab.weight.Rd | 110 +- 14 files changed, 2486 insertions(+), 2416 deletions(-)
More information about processanimateR at CRAN
Permanent link
Title: Utility Sparse Matrix Functions for Quantitative Language
Comparison
Description: Extension of the functionality of the Matrix package for using sparse matrices. Some of the functions are very general, while other are highly specific for special data format as used for quantitative language comparison (QLC).
Author: Michael Cysouw
Maintainer: Michael Cysouw <cysouw@mac.com>
Diff between qlcMatrix versions 0.9.5 dated 2015-10-09 and 0.9.7 dated 2018-04-20
DESCRIPTION | 13 - MD5 | 51 ++--- NAMESPACE | 4 NEWS.md | 23 ++ R/assoc.R | 2 R/base.R | 2 R/dist.R |only R/reduction.R |only R/sim.R | 14 - R/split.R | 8 R/utils.R | 16 - README.md | 7 build/vignette.rds |binary exec |only inst/doc/transformingDataSparse.Rmd | 7 inst/doc/transformingDataSparse.html | 336 ++++++++++------------------------- man/bibles.Rd | 19 + man/cosSparse.Rd | 14 - man/dimRed.Rd |only man/distSparse.Rd |only man/huber.Rd | 2 man/pwMatrix.Rd | 4 man/qlcMatrix-package.Rd | 4 man/rKhatriRao.Rd | 6 man/sim.nominal.Rd | 20 +- man/sim.strings.Rd | 14 + man/splitStrings.Rd | 6 man/splitText.Rd | 4 vignettes/transformingDataSparse.Rmd | 7 29 files changed, 257 insertions(+), 326 deletions(-)
Title: Penalized Multivariate Analysis
Description: Performs Penalized Multivariate Analysis: a penalized
matrix decomposition, sparse principal components analysis, and
sparse canonical correlation analysis, described in the
following papers: (1) Witten, Tibshirani and Hastie (2009) A
penalized matrix decomposition, with applications to sparse
principal components and canonical correlation analysis.
Biostatistics 10(3):515-534. (2) Witten and Tibshirani (2009)
Extensions of sparse canonical correlation analysis, with
applications to genomic data. Statistical Applications in
Genetics and Molecular Biology 8(1): Article 28.
Author: Daniela Witten and Rob Tibshirani and Sam Gross and
Balasubramanian Narasimhan
Maintainer: ORPHANED
Diff between PMA versions 1.0.9 dated 2013-03-25 and 1.0.11 dated 2018-04-20
DESCRIPTION | 17 ++++++--- MD5 | 26 +++++++------- NAMESPACE | 25 ++++++++++++++ R/CCA.R | 3 - man/CCA.Rd | 87 +++++++++++++++++++++++++++---------------------- man/CCA.permute.Rd | 3 + src/FLSA.cc | 16 ++++----- src/FLSAGeneral.cc | 5 -- src/FLSAGeneralMain.cc | 10 ++--- src/GeneralFunctions.h | 2 - src/Groups.cc | 10 ++--- src/MaxFlowGraph.cc | 8 ++-- src/PenaltyGraph.cc | 2 - src/init.cc | 2 + 14 files changed, 127 insertions(+), 89 deletions(-)
Title: R Interface to the Europe PubMed Central RESTful Web Service
Description: An R Client for the Europe PubMed Central RESTful Web Service
(see <https://europepmc.org/RestfulWebService> for more information). It
gives access to both metadata on life science literature and open access
full texts. Europe PMC indexes all PubMed content and other literature
sources including Agricola, a bibliographic database of citations to the
agricultural literature, or Biological Patents. In addition to bibliographic
metadata, the client allows users to fetch citations and reference lists.
Links between life-science literature and other EBI databases, including
ENA, PDB or ChEMBL are also accessible. No registration or API key is
required. See the vignettes for usage examples.
Author: Najko Jahn [aut, cre, cph],
Maƫlle Salmon [ctb]
Maintainer: Najko Jahn <najko.jahn@gmail.com>
Diff between europepmc versions 0.2 dated 2017-12-11 and 0.3 dated 2018-04-20
DESCRIPTION | 12 MD5 | 66 ++--- NAMESPACE | 3 NEWS.md | 9 R/epmc_citations.r | 73 ++--- R/epmc_db.r | 124 +++++---- R/epmc_db_count.r | 32 -- R/epmc_lablinks.r | 133 ++++------ R/epmc_lablinks_count.r | 20 - R/epmc_refs.r | 75 ++--- R/epmc_search.r | 11 R/epmc_tm.r | 161 ++++++++---- R/epmc_tm_count.r | 17 - R/europepmc.r | 10 R/utils.r | 129 +++++---- README.md | 58 ++-- build/vignette.rds |binary inst/doc/evergreenreviewgraphs.Rmd | 2 inst/doc/evergreenreviewgraphs.html | 84 +++--- inst/doc/introducing-europepmc.Rmd | 3 inst/doc/introducing-europepmc.html | 465 +++++++++++++++++------------------- inst/image/unnamed-chunk-4-1.png |binary man/epmc_db.Rd | 7 man/epmc_db_count.Rd | 9 man/epmc_lablinks.Rd | 18 - man/epmc_search.Rd | 4 man/epmc_tm.Rd | 25 - man/europepmc.Rd | 6 tests/testthat/test_epmc_db.r | 8 tests/testthat/test_epmc_lablinks.r | 13 - tests/testthat/test_epmc_search.r | 2 tests/testthat/test_epmc_tm.r | 4 vignettes/evergreenreviewgraphs.Rmd | 2 vignettes/introducing-europepmc.Rmd | 3 34 files changed, 805 insertions(+), 783 deletions(-)
Title: Many-to-One Comparisons of Proportions
Description: Asymptotic simultaneous confidence intervals for comparison of many treatments with one control,
for the difference of binomial proportions, allows for Dunnett-like-adjustment, Bonferroni or unadjusted intervals.
Simulation of power of the above interval methods, approximate calculation of any-pair-power, and sample size
iteration based on approximate any-pair power. Exact conditional maximum test for many-to-one comparisons to a control.
Author: Frank Schaarschmidt
Maintainer: Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
Diff between binMto versions 0.0-6 dated 2013-10-09 and 0.0-7 dated 2018-04-20
DESCRIPTION | 14 ++++++-------- MD5 | 8 ++++---- NAMESPACE | 7 ++++++- man/ec.mto.Rd | 2 -- man/nbinMto.Rd | 2 +- 5 files changed, 17 insertions(+), 16 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-05 0.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-09 0.2.0
2013-08-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-14 1.0.1
2016-08-18 1.0.0
Title: Area-Proportional Euler and Venn Diagrams with Circles or
Ellipses
Description: Generate area-proportional Euler diagrams
using numerical optimization. An Euler diagram is a generalization of a Venn
diagram, relaxing the criterion that all interactions need to be
represented. Diagrams may be fit with ellipses and circles via
a wide range of inputs and can be visualized in numerous ways.
Author: Johan Larsson [aut, cre] (<https://orcid.org/0000-0002-4029-5945>),
A. Jonathan R. Godfrey [ctb],
Tim Kelley [ctb] (original Nelder-Mead code),
David H. Eberly [ctb] (geometric algorithms),
Peter Gustafsson [ctb],
Emanuel Huber [ctb] (root solver code)
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between eulerr versions 4.0.0 dated 2018-02-05 and 4.1.0 dated 2018-04-20
DESCRIPTION | 13 MD5 | 46 +- NEWS.md | 23 + R/euler.R | 373 ++++++++++---------- R/geometry.R | 16 R/layout.R | 33 - R/plot.euler.R | 613 +++++++++++++++++----------------- README.md | 8 build/vignette.rds |binary inst/CITATION | 13 inst/doc/introduction.R | 6 inst/doc/introduction.Rnw | 3 inst/doc/introduction.pdf |binary inst/doc/under-the-hood.Rnw | 12 inst/doc/under-the-hood.pdf |binary man/euler.Rd | 4 man/eulerr-package.Rd | 2 man/plot.euler.Rd | 16 man/setup_grobs.Rd | 14 tests/testthat/test_inputs.R | 2 tests/testthat/test_reproducibility.R | 2 tools/README-plot_method-1.png |binary vignettes/introduction.Rnw | 3 vignettes/under-the-hood.Rnw | 12 24 files changed, 634 insertions(+), 580 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-05 0.3.5
2016-11-17 0.3.4.1
2016-08-31 0.3.4
2016-08-02 0.3.3
2016-05-13 0.3.2
2016-04-01 0.3.1
2016-03-01 0.3.0
Title: Quick and Dirty Estimates for Wildlife Populations
Description: Provides simple, fast functions for maximum likelihood and Bayesian estimates of wildlife population parameters, suitable for use with simulated data or bootstraps. Early versions were indeed quick and dirty, but optional error-checking routines and meaningful error messages have been added. Includes single and multi-season occupancy, closed capture population estimation, survival, species richness and distance measures.
Author: Mike Meredith
Maintainer: Mike Meredith <mmeredith@wcs.org>
Diff between wiqid versions 0.1.3 dated 2017-11-18 and 0.1.4 dated 2018-04-20
DESCRIPTION | 8 +++--- MD5 | 48 +++++++++++++++++++------------------ NAMESPACE | 17 +++++++------ NEWS | 16 ++++++++++++ R/BoccSS0.R | 4 +++ R/Bwiqid_methods.R | 46 ++++++++++++++++++++++++++++++++++- R/Bwiqid_plots.R | 62 ++++++++++++++++++++++++++---------------------- R/as_Bwiqid.R | 7 +++-- R/densityFolded.R |only R/occSSrn.R | 6 ++++ R/plotPost.R | 25 ++++++++++--------- data/GrandSkinks.rda |binary data/KanhaTigers.rda |binary data/KillarneyBirds.rda |binary data/MeadowVoles.rda |binary data/Temburong.rda |binary data/dippers.rda |binary data/railSims.rda |binary data/salamanders.rda |binary data/seedbank.rda |binary data/weta.rda |binary man/BoccSS.Rd | 4 +-- man/densityFolded.Rd |only man/plotDiagnostics.Rd | 10 +++++-- man/print_Bwiqid.Rd | 19 ++++++++------ man/wiqid-package.Rd | 2 - 26 files changed, 182 insertions(+), 92 deletions(-)
Title: A Wes Anderson Palette Generator
Description: Palettes generated mostly from 'Wes Anderson' movies.
Author: Karthik Ram [aut, cre] (<https://orcid.org/0000-0002-0233-1757>),
Hadley Wickham [aut],
Clark Richards [ctb],
Aaron Baggett [ctb]
Maintainer: Karthik Ram <karthik.ram@gmail.com>
Diff between wesanderson versions 0.3.2 dated 2015-01-22 and 0.3.6 dated 2018-04-20
DESCRIPTION | 23 ++++++++++++++--------- LICENSE | 2 +- MD5 | 21 +++++++++++---------- NAMESPACE | 7 ++++++- NEWS | 13 ++++++++++++- R/colors.R | 50 +++++++++++++++++++++++++++++--------------------- R/globals.R |only R/wesanderson.R | 1 + man/heatmap.Rd | 11 ++--------- man/wes_palette.Rd | 23 ++++++++++++----------- man/wes_palettes.Rd | 21 ++------------------- man/wesanderson.Rd | 5 ++--- 12 files changed, 92 insertions(+), 85 deletions(-)
Title: A Dependency Management System for Projects and their R Package
Dependencies
Description: Manage the R packages your project depends
on in an isolated, portable, and reproducible way.
Author: Kevin Ushey, Jonathan McPherson, Joe Cheng, Aron Atkins, JJ Allaire
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between packrat versions 0.4.9-1 dated 2018-03-12 and 0.4.9-2 dated 2018-04-20
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/github.R | 2 +- R/restore.R | 16 ++++++++++++---- inst/resources/init-rprofile.R | 2 +- inst/resources/init.R | 2 +- 6 files changed, 23 insertions(+), 15 deletions(-)
Title: Spatial Downscaling using the Dissever Algorithm
Description: Spatial downscaling of coarse grid mapping to fine grid
mapping using predictive covariates and a model fitted using the 'caret'
package. The original dissever algorithm was published by Malone et al.
(2012) <doi:10.1016/j.cageo.2011.08.021>, and extended by Roudier et al.
(2017) <doi:10.1016/j.compag.2017.08.021>.
Author: Pierre Roudier [cre, aut],
Brendan Malone [ctb]
Maintainer: Pierre Roudier <roudierp@landcareresearch.co.nz>
Diff between dissever versions 0.2-2 dated 2018-01-15 and 0.2-3 dated 2018-04-20
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/dissever.R | 31 ++++++++++++++++++++++--------- build/vignette.rds |binary inst/doc/dissever-demo.html | 30 +++++++++++++++--------------- man/dissever.Rd | 2 +- 6 files changed, 47 insertions(+), 34 deletions(-)