Title: R Functions for Working with Spatial Data
Description: Spatial functions meant to enhance the core functionality of the
package "raster", including a parallel processing engine for use with
rasters.
Author: Jonathan Asher Greenberg
Maintainer: Jonathan Asher Greenberg <spatial-tools@estarcion.net>
Diff between spatial.tools versions 1.4.8 dated 2014-07-02 and 1.6.0 dated 2018-04-22
DESCRIPTION | 18 - MD5 | 108 +++++------ NAMESPACE | 4 R/bbox_to_SpatialPolygons.R | 3 R/binary_image_write.R | 5 R/brickstack_to_raster_list.R | 5 R/fix_extent.R | 2 R/focal_hpc.R | 128 +++++++++---- R/getValuesBlock_enhanced.R | 1 R/getValuesBlock_stackfix.R | 1 R/is.Raster.R | 1 R/modify_raster_margins.R | 1 R/predict_rasterEngine.R | 93 ++++++++- R/rasterEngine.R | 56 +++-- R/raster_to_GLT.R | 1 R/raster_to_IGM.R | 1 R/raster_to_filenames.R | 1 R/sfQuickInit.R | 3 R/sfQuickStop.R | 4 R/spatial_sync_vector.R | 2 R/tahoe_highrez_data.R | 1 R/tahoe_highrez_training_data.R | 2 R/tahoe_lidar_bareearth_data.R | 1 R/tahoe_lidar_highesthit_data.R | 1 man/add_leading_zeroes.Rd | 6 man/bbox_to_SpatialPolygons.Rd | 11 - man/binary_image_write.Rd | 12 - man/brickstack_to_raster_list.Rd | 6 man/build_raster_header.Rd | 16 - man/create_blank_raster.Rd | 16 - man/fix_extent.Rd | 12 - man/focal_hpc.Rd | 80 ++++---- man/getValuesBlock_enhanced.Rd | 15 - man/getValuesBlock_stackfix.Rd | 11 - man/is.Raster.Rd | 7 man/list.raster.files.Rd | 14 - man/modify_raster_margins.Rd | 7 man/predict_rasterEngine.Rd | 28 +- man/projectRaster_rigorous.Rd | 14 - man/rasterEngine.Rd | 369 ++++++++++++++++++-------------------- man/raster_to_GLT.Rd | 14 - man/raster_to_IGM.Rd | 14 - man/raster_to_filenames.Rd | 13 - man/remove_file_extension.Rd | 4 man/sfQuickInit.Rd | 4 man/sfQuickStop.Rd | 4 man/spatial_sync_raster.Rd | 12 - man/spatial_sync_vector.Rd | 10 - man/subset_raster_by_names.Rd | 4 man/tahoe_highrez.tif.Rd | 5 man/tahoe_highrez_training.Rd | 6 man/tahoe_lidar_bareearth.tif.Rd | 7 man/tahoe_lidar_highesthit.tif.Rd | 7 man/which.max.simple.Rd | 10 - man/which.min.simple.Rd | 10 - 55 files changed, 694 insertions(+), 497 deletions(-)
Title: An Easy Way to Report Regression Analysis
Description: Provides an easy way to report the results of regression analysis, including:
1. Proportional hazards regression model from function 'coxph' of package 'survival';
2. Ordered logistic regression from function 'polr' of package 'MASS';
3. Binary logistic regression from function 'glm' of package 'stats';
4. Linear regression from function 'lm' of package 'stats';
5. Risk regression model for survival analysis with competing risks from function 'FGR' of package 'riskRegression';
6. Multilevel model from function 'lme' of package 'nlme'.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between reportReg versions 0.1.0 dated 2017-05-19 and 0.2.0 dated 2018-04-22
DESCRIPTION | 11 +++-- MD5 | 8 ++-- NAMESPACE | 1 R/reportReg.R | 103 +++++++++++++++++++++++++++++++++++++------------------ man/reportReg.Rd | 10 +++-- 5 files changed, 89 insertions(+), 44 deletions(-)
Title: Wrappers for the Geospatial Data Abstraction Library (GDAL)
Utilities
Description: Wrappers for the Geospatial Data Abstraction Library (GDAL)
Utilities.
Author: Jonathan Asher Greenberg and Matteo Mattiuzzi
Maintainer: Jonathan Asher Greenberg <gdalUtils@estarcion.net>
Diff between gdalUtils versions 2.0.1.7 dated 2015-10-10 and 2.0.1.14 dated 2018-04-22
DESCRIPTION | 14 +--- MD5 | 91 ++++++++++++++-------------- NAMESPACE | 3 R/align_rasters.R | 13 +++- R/gdal_cmd_builder.R | 28 ++++++++ R/gdal_contour.R | 9 ++ R/gdal_grid.R | 9 ++ R/gdal_setInstallation.R | 1 R/gdal_translate.R | 27 ++++++-- R/get_subdatasets.R | 8 ++ R/is.Raster.R |only R/mosaic_rasters.R | 121 ++++++++++++++++++++++++++++++++++++-- R/nearblack.R | 2 R/ogr2ogr.R | 8 +- R/raster2GDAL.R |only man/align_rasters.Rd | 17 ++--- man/batch_gdal_translate.Rd | 13 +--- man/gdal_chooseInstallation.Rd | 11 +-- man/gdal_cmd_builder.Rd | 15 ++-- man/gdal_contour.Rd | 23 +++---- man/gdal_grid.Rd | 33 +++++----- man/gdal_rasterize.Rd | 19 ++--- man/gdal_setInstallation.Rd | 21 +++--- man/gdal_translate.Rd | 27 ++++---- man/gdaladdo.Rd | 15 ++-- man/gdalbuildvrt.Rd | 15 ++-- man/gdaldem.Rd | 21 +++--- man/gdalinfo.Rd | 15 ++-- man/gdallocationinfo.Rd | 15 ++-- man/gdalmanage.Rd | 37 +++++------ man/gdalsrsinfo.Rd | 15 ++-- man/gdaltindex.Rd | 19 ++--- man/gdaltransform.Rd | 15 ++-- man/gdalwarp.Rd | 17 ++--- man/get_subdatasets.Rd | 18 +++-- man/is.Raster.Rd |only man/mosaic_rasters.Rd | 23 +++++-- man/nearblack.Rd | 23 +++---- man/ogr2ogr.Rd | 33 +++++----- man/ogrinfo.Rd | 15 ++-- man/ogrlineref.Rd | 21 +++--- man/ogrtindex.Rd | 29 ++++----- man/qm.Rd | 5 - man/remove_file_extension.Rd | 3 man/tahoe_highrez_training.Rd | 3 man/tahoe_lidar_bareearth.tif.Rd | 5 - man/tahoe_lidar_highesthit.tif.Rd | 5 - man/test_modis.hdf.Rd | 3 48 files changed, 532 insertions(+), 351 deletions(-)
Title: Discrete Laplace Mixture Inference using the EM Algorithm
Description: Make inference in a mixture of discrete Laplace distributions using the EM algorithm. This can e.g. be used for modelling the distribution of Y chromosomal haplotypes as described in [1, 2] (refer to the URL section).
Author: Mikkel Meyer Andersen [aut, cre],
Poul Svante Eriksen [aut]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between disclapmix versions 1.6.2 dated 2015-09-09 and 1.7 dated 2018-04-22
disclapmix-1.6.2/disclapmix/data/danes.txt.gz |only disclapmix-1.6.2/disclapmix/man/disclapmix-package.Rd |only disclapmix-1.6.2/disclapmix/man/disclapmixfit.Rd |only disclapmix-1.6.2/disclapmix/src/happrobsum.cpp |only disclapmix-1.7/disclapmix/DESCRIPTION | 31 - disclapmix-1.7/disclapmix/LICENSE |only disclapmix-1.7/disclapmix/MD5 | 108 +++- disclapmix-1.7/disclapmix/NAMESPACE | 68 +- disclapmix-1.7/disclapmix/NEWS | 10 disclapmix-1.7/disclapmix/R/RcppExports.R | 68 -- disclapmix-1.7/disclapmix/R/clusterdist.R | 25 disclapmix-1.7/disclapmix/R/clusterprob.R | 20 disclapmix-1.7/disclapmix/R/disclapmix-package.R |only disclapmix-1.7/disclapmix/R/disclapmix.R | 163 ++++++ disclapmix-1.7/disclapmix/R/helper.R | 111 ++++ disclapmix-1.7/disclapmix/R/mixture.R | 130 +++++ disclapmix-1.7/disclapmix/R/proto_functions.R | 307 ++++-------- disclapmix-1.7/disclapmix/README.md |only disclapmix-1.7/disclapmix/build |only disclapmix-1.7/disclapmix/data/danes.txt |only disclapmix-1.7/disclapmix/inst |only disclapmix-1.7/disclapmix/man/clusterdist.Rd | 35 - disclapmix-1.7/disclapmix/man/clusterprob.Rd | 40 - disclapmix-1.7/disclapmix/man/contributor_pairs.Rd | 39 - disclapmix-1.7/disclapmix/man/danes.Rd | 34 - disclapmix-1.7/disclapmix/man/disclapmix.Rd | 171 ++++-- disclapmix-1.7/disclapmix/man/generate_mixture.Rd | 31 - disclapmix-1.7/disclapmix/man/get_rank.Rd |only disclapmix-1.7/disclapmix/man/haplotype_diversity.Rd |only disclapmix-1.7/disclapmix/man/plot.disclapmixfit.Rd | 47 - disclapmix-1.7/disclapmix/man/plot.ranked_contrib_pairs.Rd |only disclapmix-1.7/disclapmix/man/predict.disclapmixfit.Rd | 33 - disclapmix-1.7/disclapmix/man/print.contrib_pairs.Rd |only disclapmix-1.7/disclapmix/man/print.disclapmixfit.Rd | 29 - disclapmix-1.7/disclapmix/man/print.ranked_contrib_pairs.Rd |only disclapmix-1.7/disclapmix/man/rank_contributor_pairs.Rd | 65 +- disclapmix-1.7/disclapmix/man/simulate.disclapmixfit.Rd | 37 - disclapmix-1.7/disclapmix/man/summary.disclapmixfit.Rd | 26 - disclapmix-1.7/disclapmix/src/RcppExports.cpp | 297 ++++------- disclapmix-1.7/disclapmix/src/eigenmvn.h |only disclapmix-1.7/disclapmix/src/helper.cpp | 88 --- disclapmix-1.7/disclapmix/src/proto.cpp |only disclapmix-1.7/disclapmix/tests |only disclapmix-1.7/disclapmix/vignettes |only 44 files changed, 1158 insertions(+), 855 deletions(-)
Title: Descriptive Analysis by Groups
Description: Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Author: Isaac Subirana, Joan Vila, Hector Sanz, Gavin Lucas, Judith Penafiel and David Gimenez
Maintainer: Isaac Subirana <isubirana@imim.es>
Diff between compareGroups versions 3.3.3 dated 2018-01-29 and 3.3.4 dated 2018-04-22
DESCRIPTION | 12 MD5 | 16 build/vignette.rds |binary inst/doc/changelog | 2 inst/doc/compareGroups_vignette.R | 6 inst/doc/compareGroups_vignette.Rmd | 10 inst/doc/compareGroups_vignette.html | 913 +++++++++++++++++++---------------- man/compareGroups-package.Rd | 4 vignettes/compareGroups_vignette.Rmd | 10 9 files changed, 549 insertions(+), 424 deletions(-)
Title: Finds the Best Subset of Points to Sample
Description: Given a few examples of experiments over a time (or spatial) course,
'NITPicker' selects a subset of points to sample in follow-up experiments,
which would (i) best distinguish between the experimental conditions and the
control condition (ii) best distinguish between two models of how the
experimental condition might differ from the control (iii) a combination of
the two. Ezer and Keir (2018) <doi:10.1101/301796>.
Author: Daphne Ezer
Maintainer: Daphne Ezer <dezer@turing.ac.uk>
Diff between NITPicker versions 0.1.1 dated 2018-04-20 and 0.1.2 dated 2018-04-22
DESCRIPTION | 6 MD5 | 20 - NEWS | 5 R/Pathfinder.R | 24 - inst/doc/my-vignette.R | 6 inst/doc/my-vignette.Rmd | 6 inst/doc/my-vignette.html | 846 ++++++++++++++++++++++------------------------ man/findPathF1.Rd | 4 man/findPathF2.Rd | 5 man/findPathF3.Rd | 5 vignettes/my-vignette.Rmd | 6 11 files changed, 471 insertions(+), 462 deletions(-)
Title: Music Chords Extraction
Description: Extracts music chords from the 'CifraClub' website <https://www.cifraclub.com.br/>.
The package also has functions for cleaning the extracted data and
feature extraction.
Author: Bruna Wundervald
Maintainer: Bruna Wundervald <brunadaviesw@gmail.com>
Diff between chorrrds versions 0.1.3 dated 2018-04-19 and 0.1.4 dated 2018-04-22
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NAMESPACE | 7 +++---- R/clean.R | 28 +++++++++++++--------------- R/get_chords.R | 2 ++ R/get_songs.R | 2 ++ R/utils.R | 12 ------------ README.md | 2 +- man/clean.Rd | 10 ++++++---- man/get_chords.Rd | 2 ++ man/get_songs.Rd | 2 ++ man/pipe.Rd | 3 --- 12 files changed, 45 insertions(+), 53 deletions(-)
Title: Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Description: Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects. This method is described by
Collyer, Sekora, & Adams (2015) <doi:10.1038/hdy.2014.75>.
Author: Michael Collyer, Dean Adams
Maintainer: Michael Collyer <mlcollyer@gmail.com>
Diff between RRPP versions 0.1.0 dated 2018-01-22 and 0.2.0 dated 2018-04-22
DESCRIPTION | 10 MD5 | 41 +-- NAMESPACE | 7 NEWS | 22 + R/RRPP.support.code.r | 554 ++++++++++++++++++++++++++++++++++++++++--- R/RRPP.utils.r | 177 +++++++++++++ R/anova.lm.rrpp.r | 119 ++------- R/coef.lm.rrpp.r | 33 +- R/lm.rrpp.r | 27 +- R/pairwise.r |only R/predict.lm.rrpp.r | 4 build |only inst |only man/PlethMorph.Rd | 2 man/RRPP-package.Rd | 17 - man/anova.lm.rrpp.Rd | 24 + man/coef.lm.rrpp.Rd | 10 man/lm.rrpp.Rd | 12 man/pairwise.Rd |only man/predict.lm.rrpp.Rd | 4 man/print.pairwise.Rd |only man/print.predict.lm.rrpp.Rd | 2 man/summary.pairwise.Rd |only vignettes |only 24 files changed, 863 insertions(+), 202 deletions(-)
Title: Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM,
PBS/Torque)
Description: Evaluate arbitrary function calls using workers on HPC schedulers
in single line of code. All processing is done on the network without
accessing the file system. Remote schedulers are supported via SSH.
Author: Michael Schubert <mschu.dev@gmail.com>
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Diff between clustermq versions 0.8.3 dated 2018-01-21 and 0.8.4 dated 2018-04-22
clustermq-0.8.3/clustermq/tests/testthat/qsys_impl.r |only clustermq-0.8.3/clustermq/tests/testthat/test-check_args.r |only clustermq-0.8.3/clustermq/tests/testthat/test-qsys.r |only clustermq-0.8.3/clustermq/tests/testthat/test-ssh_proxy.r |only clustermq-0.8.3/clustermq/tests/testthat/test-work_chunk.r |only clustermq-0.8.3/clustermq/tests/testthat/test-worker.r |only clustermq-0.8.4/clustermq/DESCRIPTION | 14 +- clustermq-0.8.4/clustermq/MD5 | 66 +++++----- clustermq-0.8.4/clustermq/R/Q.r | 16 -- clustermq-0.8.4/clustermq/R/Q_rows.r | 9 - clustermq-0.8.4/clustermq/R/check_args.r | 10 + clustermq-0.8.4/clustermq/R/master.r | 19 +-- clustermq-0.8.4/clustermq/R/qsys.r | 7 - clustermq-0.8.4/clustermq/R/qsys_lsf.r | 13 ++ clustermq-0.8.4/clustermq/R/qsys_multicore.r | 6 clustermq-0.8.4/clustermq/R/qsys_pbs.r |only clustermq-0.8.4/clustermq/R/qsys_sge.r | 13 ++ clustermq-0.8.4/clustermq/R/qsys_slurm.r | 13 ++ clustermq-0.8.4/clustermq/R/work_chunk.r | 9 + clustermq-0.8.4/clustermq/R/worker.r | 45 ++++--- clustermq-0.8.4/clustermq/R/zzz.r | 4 clustermq-0.8.4/clustermq/build/vignette.rds |binary clustermq-0.8.4/clustermq/inst/doc/clustermq.R | 2 clustermq-0.8.4/clustermq/inst/doc/clustermq.Rmd | 64 +++++----- clustermq-0.8.4/clustermq/inst/doc/clustermq.html | 68 +++++------ clustermq-0.8.4/clustermq/man/PBS.Rd |only clustermq-0.8.4/clustermq/man/Q.Rd | 5 clustermq-0.8.4/clustermq/man/Q_rows.Rd | 4 clustermq-0.8.4/clustermq/man/check_args.Rd | 2 clustermq-0.8.4/clustermq/man/master.Rd | 4 clustermq-0.8.4/clustermq/man/work_chunk.Rd | 4 clustermq-0.8.4/clustermq/tests/bin |only clustermq-0.8.4/clustermq/tests/testthat/helper-util.r | 19 +++ clustermq-0.8.4/clustermq/tests/testthat/test-1-check_args.r |only clustermq-0.8.4/clustermq/tests/testthat/test-2-work_chunk.r |only clustermq-0.8.4/clustermq/tests/testthat/test-3-worker.r |only clustermq-0.8.4/clustermq/tests/testthat/test-4-qsys.r |only clustermq-0.8.4/clustermq/tests/testthat/test-5-qsys_impl.r |only clustermq-0.8.4/clustermq/tests/testthat/test-6-ssh_proxy.r |only clustermq-0.8.4/clustermq/vignettes/clustermq.Rmd | 64 +++++----- 40 files changed, 294 insertions(+), 186 deletions(-)
Title: Satellite Nightlight Data Extraction
Description: Extracts raster and zonal statistics
from satellite nightlight rasters downloaded from the United States
National Oceanic and Atmospheric Administration (<http://www.noaa.gov>)
free data repositories. Both the DMSP-OLS annual and SNPP-VIIRS monthly
nightlight raster data are supported. Satellite nightlight raster tiles are
downloaded and cropped to the country boundaries using shapefiles from the GADM
database of Global Administrative Areas (<http://gadm.org>). Zonal statistics
are then calculated at the lowest administrative boundary for the selected
country and cached locally for future retrieval. Finally, a simple data
explorer/browser is included that allows one to visualize the cached data e.g.
graphing, mapping and clustering regional data.
Author: Christopher Njuguna [aut, cre, cph]
Maintainer: Christopher Njuguna <chris.njuguna@gmail.com>
Diff between Rnightlights versions 0.1.5 dated 2018-01-07 and 0.2.0 dated 2018-04-22
Rnightlights-0.1.5/Rnightlights/man/getCtryShpLowestLyrName.Rd |only Rnightlights-0.1.5/Rnightlights/man/getCtryShpLyrName.Rd |only Rnightlights-0.1.5/Rnightlights/man/validCtryCode.Rd |only Rnightlights-0.1.5/Rnightlights/man/validNlMonthNum.Rd |only Rnightlights-0.1.5/Rnightlights/man/validNlPeriod.Rd |only Rnightlights-0.1.5/Rnightlights/man/validNlPeriodOLS.Rd |only Rnightlights-0.1.5/Rnightlights/man/validNlPeriodVIIRS.Rd |only Rnightlights-0.1.5/Rnightlights/man/validNlYearNum.Rd |only Rnightlights-0.1.5/Rnightlights/man/validStat.Rd |only Rnightlights-0.2.0/Rnightlights/DESCRIPTION | 12 Rnightlights-0.2.0/Rnightlights/MD5 | 250 Rnightlights-0.2.0/Rnightlights/NAMESPACE | 60 Rnightlights-0.2.0/Rnightlights/R/ctrycode.R | 438 - Rnightlights-0.2.0/Rnightlights/R/ctrynldata.R | 2090 ++--- Rnightlights-0.2.0/Rnightlights/R/datapath.R | 1155 +-- Rnightlights-0.2.0/Rnightlights/R/downloadnltiles.R | 438 - Rnightlights-0.2.0/Rnightlights/R/exploredata.R | 54 Rnightlights-0.2.0/Rnightlights/R/getnlfilename.R | 673 - Rnightlights-0.2.0/Rnightlights/R/getnlurl.R | 312 Rnightlights-0.2.0/Rnightlights/R/masq.R | 232 Rnightlights-0.2.0/Rnightlights/R/nightlights.R | 1337 ++- Rnightlights-0.2.0/Rnightlights/R/nlperiod.R | 538 - Rnightlights-0.2.0/Rnightlights/R/nltype.R | 70 Rnightlights-0.2.0/Rnightlights/R/options.R | 322 Rnightlights-0.2.0/Rnightlights/R/polygons.R | 1131 ++- Rnightlights-0.2.0/Rnightlights/R/stats.R | 154 Rnightlights-0.2.0/Rnightlights/R/tiles.R | 1543 ++-- Rnightlights-0.2.0/Rnightlights/R/upgrade.R |only Rnightlights-0.2.0/Rnightlights/R/utils.R | 775 -- Rnightlights-0.2.0/Rnightlights/R/zzz.R | 88 Rnightlights-0.2.0/Rnightlights/inst/_Rnightlights | 4 Rnightlights-0.2.0/Rnightlights/inst/application/server.R | 3604 +++++----- Rnightlights-0.2.0/Rnightlights/inst/application/ui.R | 417 - Rnightlights-0.2.0/Rnightlights/man/ZonalPipe.Rd | 70 Rnightlights-0.2.0/Rnightlights/man/addREADME.Rd | 46 Rnightlights-0.2.0/Rnightlights/man/allValid.Rd | 72 Rnightlights-0.2.0/Rnightlights/man/allValidCtryAdmLvls.Rd |only Rnightlights-0.2.0/Rnightlights/man/allValidCtryCodes.Rd |only Rnightlights-0.2.0/Rnightlights/man/allValidNlPeriods.Rd |only Rnightlights-0.2.0/Rnightlights/man/allValidNlTypes.Rd |only Rnightlights-0.2.0/Rnightlights/man/createCtryNlDataDF.Rd | 56 Rnightlights-0.2.0/Rnightlights/man/createCtryStruct.Rd |only Rnightlights-0.2.0/Rnightlights/man/createNlDataDirs.Rd | 40 Rnightlights-0.2.0/Rnightlights/man/createNlTilesSpPolysDF.Rd | 36 Rnightlights-0.2.0/Rnightlights/man/ctryCodeToName.Rd | 64 Rnightlights-0.2.0/Rnightlights/man/ctryNameToCode.Rd | 54 Rnightlights-0.2.0/Rnightlights/man/ctryShpLyrName2Num.Rd | 48 Rnightlights-0.2.0/Rnightlights/man/deleteNlDataCol.Rd | 68 Rnightlights-0.2.0/Rnightlights/man/dnldCtryPoly.Rd | 46 Rnightlights-0.2.0/Rnightlights/man/downloadNlTiles.Rd | 86 Rnightlights-0.2.0/Rnightlights/man/downloadNlTilesOLS.Rd | 52 Rnightlights-0.2.0/Rnightlights/man/downloadNlTilesVIIRS.Rd | 60 Rnightlights-0.2.0/Rnightlights/man/existsCtryNlData.Rd | 60 Rnightlights-0.2.0/Rnightlights/man/existsCtryNlDataFile.Rd | 53 Rnightlights-0.2.0/Rnightlights/man/existsPolyFnamePath.Rd | 44 Rnightlights-0.2.0/Rnightlights/man/existsPolyFnameZip.Rd | 44 Rnightlights-0.2.0/Rnightlights/man/exploreData.Rd | 46 Rnightlights-0.2.0/Rnightlights/man/fnAggRadGdal.Rd | 82 Rnightlights-0.2.0/Rnightlights/man/fnAggRadRast.Rd | 90 Rnightlights-0.2.0/Rnightlights/man/getAllNlCtryCodes.Rd | 48 Rnightlights-0.2.0/Rnightlights/man/getAllNlPeriods.Rd | 52 Rnightlights-0.2.0/Rnightlights/man/getAllNlTypes.Rd |only Rnightlights-0.2.0/Rnightlights/man/getCtryNlData.Rd | 219 Rnightlights-0.2.0/Rnightlights/man/getCtryNlDataColName.Rd | 55 Rnightlights-0.2.0/Rnightlights/man/getCtryNlDataFname.Rd | 55 Rnightlights-0.2.0/Rnightlights/man/getCtryNlDataFnamePath.Rd | 54 Rnightlights-0.2.0/Rnightlights/man/getCtryPolyAdmLevelNames.Rd | 56 Rnightlights-0.2.0/Rnightlights/man/getCtryPolyUrl.Rd | 54 Rnightlights-0.2.0/Rnightlights/man/getCtryRasterOutputFname.Rd | 56 Rnightlights-0.2.0/Rnightlights/man/getCtryRasterOutputFnamePath.Rd |only Rnightlights-0.2.0/Rnightlights/man/getCtryShpAllAdmLvls.Rd |only Rnightlights-0.2.0/Rnightlights/man/getCtryShpLowestLyrNames.Rd |only Rnightlights-0.2.0/Rnightlights/man/getCtryShpLyrNames.Rd |only Rnightlights-0.2.0/Rnightlights/man/getCtryStructFname.Rd |only Rnightlights-0.2.0/Rnightlights/man/getCtryStructFnamePath.Rd |only Rnightlights-0.2.0/Rnightlights/man/getCtryTileList.Rd | 80 Rnightlights-0.2.0/Rnightlights/man/getNlDataPath.Rd | 46 Rnightlights-0.2.0/Rnightlights/man/getNlDir.Rd | 52 Rnightlights-0.2.0/Rnightlights/man/getNlTifLclNameOLS.Rd | 50 Rnightlights-0.2.0/Rnightlights/man/getNlTileTifLclNameOLS.Rd | 50 Rnightlights-0.2.0/Rnightlights/man/getNlTileTifLclNamePath.Rd | 66 Rnightlights-0.2.0/Rnightlights/man/getNlTileTifLclNamePathOLS.Rd | 54 Rnightlights-0.2.0/Rnightlights/man/getNlTileTifLclNamePathVIIRS.Rd | 56 Rnightlights-0.2.0/Rnightlights/man/getNlTileTifLclNameVIIRS.Rd | 56 Rnightlights-0.2.0/Rnightlights/man/getNlTileZipLclNameOLS.Rd | 48 Rnightlights-0.2.0/Rnightlights/man/getNlTileZipLclNamePath.Rd | 68 Rnightlights-0.2.0/Rnightlights/man/getNlTileZipLclNameVIIRS.Rd | 54 Rnightlights-0.2.0/Rnightlights/man/getNlTiles.Rd | 52 Rnightlights-0.2.0/Rnightlights/man/getNlUrlOLS.Rd | 46 Rnightlights-0.2.0/Rnightlights/man/getNlUrlVIIRS.Rd | 56 Rnightlights-0.2.0/Rnightlights/man/getPolyFname.Rd | 48 Rnightlights-0.2.0/Rnightlights/man/getPolyFnamePath.Rd | 54 Rnightlights-0.2.0/Rnightlights/man/getPolyFnameZip.Rd | 44 Rnightlights-0.2.0/Rnightlights/man/getTilesCtryIntersectVIIRS.Rd | 56 Rnightlights-0.2.0/Rnightlights/man/insertNlDataCol.Rd | 78 Rnightlights-0.2.0/Rnightlights/man/listCtryNlData.Rd | 82 Rnightlights-0.2.0/Rnightlights/man/listCtryNlRasters.Rd | 80 Rnightlights-0.2.0/Rnightlights/man/listNlTiles.Rd | 76 Rnightlights-0.2.0/Rnightlights/man/mapAllCtryPolyToTilesVIIRS.Rd | 70 Rnightlights-0.2.0/Rnightlights/man/mapCtryPolyToTilesVIIRS.Rd | 90 Rnightlights-0.2.0/Rnightlights/man/masqOLS.Rd | 74 Rnightlights-0.2.0/Rnightlights/man/masqVIIRS.Rd | 66 Rnightlights-0.2.0/Rnightlights/man/myZonal.Rd | 56 Rnightlights-0.2.0/Rnightlights/man/newNlType.Rd |only Rnightlights-0.2.0/Rnightlights/man/nlCleanup.Rd | 34 Rnightlights-0.2.0/Rnightlights/man/nlInit.Rd | 42 Rnightlights-0.2.0/Rnightlights/man/nlRange.Rd | 61 Rnightlights-0.2.0/Rnightlights/man/pkgOptions.Rd | 148 Rnightlights-0.2.0/Rnightlights/man/pkgReset.Rd | 56 Rnightlights-0.2.0/Rnightlights/man/plotCtryWithTilesVIIRS.Rd | 65 Rnightlights-0.2.0/Rnightlights/man/processNLCountry.Rd | 141 Rnightlights-0.2.0/Rnightlights/man/processNlData.Rd | 192 Rnightlights-0.2.0/Rnightlights/man/readCtryPolyAdmLayer.Rd |only Rnightlights-0.2.0/Rnightlights/man/readCtryStruct.Rd |only Rnightlights-0.2.0/Rnightlights/man/removeDataPath.Rd | 50 Rnightlights-0.2.0/Rnightlights/man/saveCtryNlData.Rd | 58 Rnightlights-0.2.0/Rnightlights/man/searchAdmLevel.Rd |only Rnightlights-0.2.0/Rnightlights/man/setNlDataPath.Rd | 46 Rnightlights-0.2.0/Rnightlights/man/setupDataPath.Rd | 52 Rnightlights-0.2.0/Rnightlights/man/tileIdx2Name.Rd | 46 Rnightlights-0.2.0/Rnightlights/man/tileName2Idx.Rd | 46 Rnightlights-0.2.0/Rnightlights/man/tilesPolygonIntersectVIIRS.Rd | 62 Rnightlights-0.2.0/Rnightlights/man/upgradeRnightlights.Rd |only Rnightlights-0.2.0/Rnightlights/man/validCtryAdmLvls.Rd |only Rnightlights-0.2.0/Rnightlights/man/validCtryCodes.Rd |only Rnightlights-0.2.0/Rnightlights/man/validCtryNlDataDF.Rd | 48 Rnightlights-0.2.0/Rnightlights/man/validNlPeriods.Rd |only Rnightlights-0.2.0/Rnightlights/man/validNlStats.Rd |only Rnightlights-0.2.0/Rnightlights/man/validNlTileNameVIIRS.Rd | 47 Rnightlights-0.2.0/Rnightlights/man/validNlTileNumVIIRS.Rd | 53 Rnightlights-0.2.0/Rnightlights/man/validNlTypes.Rd |only Rnightlights-0.2.0/Rnightlights/tests/testthat/STP_NLData.csv |only Rnightlights-0.2.0/Rnightlights/tests/testthat/STP_OLS_1992.tif |only Rnightlights-0.2.0/Rnightlights/tests/testthat/STP_VIIRS_201401.tif |only Rnightlights-0.2.0/Rnightlights/tests/testthat/STP_adm_shp.RDS |only Rnightlights-0.2.0/Rnightlights/tests/testthat/helper.R |only Rnightlights-0.2.0/Rnightlights/tests/testthat/helper_ctrynltiles.R |only Rnightlights-0.2.0/Rnightlights/tests/testthat/helper_masq.R |only Rnightlights-0.2.0/Rnightlights/tests/testthat/helper_testutils.R |only Rnightlights-0.2.0/Rnightlights/tests/testthat/nltiles.csv |only Rnightlights-0.2.0/Rnightlights/tests/testthat/test-ctrycodes.R | 42 Rnightlights-0.2.0/Rnightlights/tests/testthat/test-ctrynltiles.R |only Rnightlights-0.2.0/Rnightlights/tests/testthat/test-ctrypoly.R |only Rnightlights-0.2.0/Rnightlights/tests/testthat/test-datapath.R |only Rnightlights-0.2.0/Rnightlights/tests/testthat/test-masq.R |only Rnightlights-0.2.0/Rnightlights/tests/testthat/test-nlfilename.R |only Rnightlights-0.2.0/Rnightlights/tests/testthat/test-nlperiods.R | 66 Rnightlights-0.2.0/Rnightlights/tests/testthat/test-stats.R |only Rnightlights-0.2.0/Rnightlights/tests/testthat/tests_ctrynldata |only Rnightlights-0.2.0/Rnightlights/tests/testthat/zzzhelper.R |only 150 files changed, 11028 insertions(+), 9598 deletions(-)
Title: Simulations and Visualizations of Rubik's Cube (with Mods)
Description: Provides simplified methods for managing classic Rubik's cubes and many other modifications of it (such as NxNxN size cubes, void cubes and 8-coloured cubes - so called octa cubes). Includes functions of handling special syntax for managing such cubes; and different approach to plotting 3D cubes without using external libraries (for example 'OpenGL').
Author: Wojciech Rosa
Maintainer: Wojciech Rosa <w.rosa@pollub.pl>
Diff between rcube versions 0.1 dated 2018-04-12 and 0.2 dated 2018-04-22
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ NAMESPACE | 1 + R/plot.cube.R | 2 +- R/plot3dCube.R | 2 ++ R/twistCube.R | 50 ++++++++++++++++++++++++++++++++++++++++++++------ man/twistCube.Rd | 49 +++++++++++++++++++++++++++++++++++++++++++------ 7 files changed, 103 insertions(+), 24 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.4.17 dated 2017-10-06 and 1.4.18 dated 2018-04-22
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-16 1.1.0
2015-01-11 1.0.2
2014-12-22 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-22 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-19 0.1.3
2017-01-20 0.1.2
Title: Projected Spatial Gaussian Process Methods
Description: Implements projected sparse Gaussian process Kriging (Ingram 'et. al.', 2008, <doi:10.1007/s00477-007-0163-9>) as an additional method for the 'intamap' package. More details on implementation (Barillec 'et. al.', 2010, <doi:10.1016/j.cageo.2010.05.008>).
Author: Ben Ingram <ingrambr@gmail.com>, Remi Barillec <remi@igiltd.com>, Jon Olav Skoien <jon.skoien@gmail.com>
Maintainer: Ben Ingram <ingrambr@gmail.com>
Diff between psgp versions 0.3-17 dated 2018-04-13 and 0.3-18 dated 2018-04-22
ChangeLog | 3 +++ DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/learnParameters.R | 8 +++++--- src/RInterface.cpp | 16 ++++++++++++++-- src/sensor_metadata_parser.cpp | 4 ++-- src/sensor_metadata_parser.h | 1 + 7 files changed, 36 insertions(+), 18 deletions(-)
Title: Kernel Smoothing
Description: Kernel smoothers for univariate and multivariate data, including densities, density derivatives, cumulative distributions, clustering, classification, density ridges, significant modal regions, and two-sample hypothesis tests. Duong (2017) <doi:10.18637/jss.v021.i07>.
Author: Tarn Duong <tarn.duong@gmail.com>
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between ks versions 1.11.0 dated 2018-01-16 and 1.11.1 dated 2018-04-22
CHANGELOG | 47 +++++++---- DESCRIPTION | 19 ++-- MD5 | 83 +++++++++++-------- NAMESPACE | 2 R/deconv-kde.R | 13 ++- R/hist.R | 10 +- R/kcde.R | 56 ++++++------- R/kcopula.R | 44 +++------- R/kda.R | 164 +++++++++++++++++++------------------- R/kdde.R | 8 + R/kde-test.R | 6 - R/kde.R | 217 +++++++++++++++++++++++++++++++++++++-------------- R/kdr.R | 6 - R/kfe.R | 4 R/kfs.R | 6 - R/kms.R | 12 ++ R/kr.R | 8 + R/prelim.R | 20 ++-- R/selector.R | 22 ++--- R/vkde.R | 6 - build/vignette.rds |binary data/air.RData |only data/cardio.RData |only data/hsct.RData |only data/plate.RData |only data/quake.RData |only data/tempb.RData |only inst/doc/kde.pdf |binary man/Hlscv.Rd | 7 + man/Hpi.Rd | 10 +- man/Hscv.Rd | 7 + man/air.Rd |only man/binning.Rd | 4 man/cardio.Rd |only man/grevillea.Rd | 9 +- man/hsct.Rd |only man/kcde.Rd | 11 +- man/kcopula.Rd | 21 ++-- man/kdcde.Rd |only man/kdr.Rd |only man/kfe.Rd | 4 man/kfs.Rd | 2 man/ks-internal.Rd | 2 man/ks-package.Rd | 68 +++++++++++---- man/plot.kdde.Rd | 17 ++- man/plot.kde.part.Rd | 4 man/quake.Rd |only man/tempb.Rd |only man/worldbank.Rd | 24 ++--- 49 files changed, 561 insertions(+), 382 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in van Hees and colleagues (2014) <doi: 10.1152/japplphysiol.00421.2014> and (2015) <doi: 10.1371/journal.pone.0142533>. The package has been developed and tested for binary data from 'GENEActiv' <https://www.activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <http://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com/product/ax3>. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Joe Heywood [ctb],
Evgeny Mirkes [ctb],
Severine Sabia [ctb],
Jairo H Migueles [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>
Diff between GGIR versions 1.5-18 dated 2018-03-18 and 1.5-21 dated 2018-04-22
GGIR-1.5-18/GGIR/data/datalist |only GGIR-1.5-21/GGIR/DESCRIPTION | 8 GGIR-1.5-21/GGIR/MD5 | 48 - GGIR-1.5-21/GGIR/R/g.part4.R | 553 +++++++++---------- GGIR-1.5-21/GGIR/R/g.part5.R | 317 +++++++--- GGIR-1.5-21/GGIR/R/g.report.part5.R | 12 GGIR-1.5-21/GGIR/R/g.shell.GGIR.R | 5 GGIR-1.5-21/GGIR/R/g.sib.det.R | 7 GGIR-1.5-21/GGIR/R/identify_level.R | 30 - GGIR-1.5-21/GGIR/README.md | 2 GGIR-1.5-21/GGIR/build/vignette.rds |binary GGIR-1.5-21/GGIR/data/data.getmeta.RData |binary GGIR-1.5-21/GGIR/inst/CITATION |only GGIR-1.5-21/GGIR/inst/NEWS.Rd | 16 GGIR-1.5-21/GGIR/inst/doc/GGIR.Rmd | 5 GGIR-1.5-21/GGIR/inst/doc/GGIR.html | 10 GGIR-1.5-21/GGIR/man/GGIR-package.Rd | 4 GGIR-1.5-21/GGIR/man/g.part4.Rd | 4 GGIR-1.5-21/GGIR/man/g.part5.Rd | 16 GGIR-1.5-21/GGIR/man/g.shell.GGIR.Rd | 10 GGIR-1.5-21/GGIR/man/identify_levels.Rd | 8 GGIR-1.5-21/GGIR/tests/testthat/test_chainof5parts.R | 7 GGIR-1.5-21/GGIR/vignettes/GGIR.Rmd | 5 GGIR-1.5-21/GGIR/vignettes/example_dovisual.jpg |binary GGIR-1.5-21/GGIR/vignettes/reportexample.jpg |binary GGIR-1.5-21/GGIR/vignettes/sleeplogexample.jpg |binary 26 files changed, 611 insertions(+), 456 deletions(-)
Title: Linear Mixed Models - An Introduction with Applications in
Veterinary Research
Description: R Codes and Datasets for Duchateau, L. and Janssen, P. and Rowlands, G. J. (1998). Linear Mixed Models. An Introduction with applications in Veterinary Research. International Livestock Research Institute.
Author: Muhammad Yaseen [aut, cre],
Luc Duchateau [ctb],
Paul Janssen [ctb],
John Rowlands [ctb]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Diff between VetResearchLMM versions 0.2.0 dated 2017-04-04 and 1.0.0 dated 2018-04-22
DESCRIPTION | 10 ++++--- MD5 | 30 +++++++++++------------ NEWS.md | 5 +++ R/Examp2.5.2.1.R | 17 ++++++------- R/Examp2.5.3.1.R | 24 +++++++++--------- R/Examp2.6.1.R | 21 +++++++++------- R/Examp3.1.R | 44 +++++++++++++++++----------------- R/Examp3.2.R | 14 +++++------ R/Examp3.3.R | 66 ++++++++++++++++++++++++++-------------------------- README.md | 4 +-- man/Examp2.5.2.1.Rd | 13 ++++------ man/Examp2.5.3.1.Rd | 14 +++++------ man/Examp2.6.1.Rd | 19 ++++++++------ man/Examp3.1.Rd | 42 ++++++++++++++++----------------- man/Examp3.2.Rd | 12 ++++----- man/Examp3.3.Rd | 54 +++++++++++++++++++++--------------------- 16 files changed, 200 insertions(+), 189 deletions(-)
More information about VetResearchLMM at CRAN
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