Title: Cubic Spline Fitting with Knot Selection
Description: Cubic spline fitting along with knot selection, includes support for additional variables.
Author: Eric Golinko
Maintainer: Eric Golinko <egolinko@gmail.com>
Diff between Kpart versions 1.2.1 dated 2017-10-19 and 1.2.2 dated 2018-05-17
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/Kpart-package.Rd | 7 ++++--- 3 files changed, 10 insertions(+), 9 deletions(-)
Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.19 dated 2018-04-08 and 0.8.20 dated 2018-05-17
FSA-0.8.19/FSA/R/bcFuns.R |only FSA-0.8.19/FSA/R/growthDataUtils.R |only FSA-0.8.19/FSA/man/addRadCap.Rd |only FSA-0.8.19/FSA/man/bcFuns.Rd |only FSA-0.8.19/FSA/man/gConvert.Rd |only FSA-0.8.19/FSA/tests/testthat/EXS_growthUtils.R |only FSA-0.8.19/FSA/tests/testthat/test_bcFuns_MSG.R |only FSA-0.8.19/FSA/tests/testthat/test_bcFuns_OUT.R |only FSA-0.8.19/FSA/tests/testthat/test_growthUtils_MSG.R |only FSA-0.8.19/FSA/tests/testthat/test_growthUtils_OUT.R |only FSA-0.8.20/FSA/DESCRIPTION | 11 +-- FSA-0.8.20/FSA/MD5 | 64 ++++++++----------- FSA-0.8.20/FSA/NAMESPACE | 3 FSA-0.8.20/FSA/NEWS.md | 13 +++ FSA-0.8.20/FSA/R/CIDists.R | 8 +- FSA-0.8.20/FSA/R/FSA.R | 2 FSA-0.8.20/FSA/R/FSAUtils.R | 2 FSA-0.8.20/FSA/R/SMBassWB.R | 2 FSA-0.8.20/FSA/R/Summarize.R | 2 FSA-0.8.20/FSA/R/bootstrap.R | 4 - FSA-0.8.20/FSA/R/capHistConvert.R | 6 - FSA-0.8.20/FSA/R/comparisonsDVR.R | 4 - FSA-0.8.20/FSA/R/dunnTest.R | 4 - FSA-0.8.20/FSA/R/knitUtil.R | 4 - FSA-0.8.20/FSA/R/mrClosed.R | 56 +++++++++++----- FSA-0.8.20/FSA/data/SMBassWB.rdata |binary FSA-0.8.20/FSA/man/FSA.Rd | 2 FSA-0.8.20/FSA/man/SMBassWB.Rd | 2 FSA-0.8.20/FSA/man/Summarize.Rd | 2 FSA-0.8.20/FSA/man/binCI.Rd | 4 - FSA-0.8.20/FSA/man/bootCase.Rd | 2 FSA-0.8.20/FSA/man/capHistConvert.Rd | 6 - FSA-0.8.20/FSA/man/compSlopes.Rd | 4 - FSA-0.8.20/FSA/man/dunnTest.Rd | 4 - FSA-0.8.20/FSA/man/geomean.Rd | 2 FSA-0.8.20/FSA/man/knitUtil.Rd | 4 - FSA-0.8.20/FSA/man/nlsBoot.Rd | 2 FSA-0.8.20/FSA/man/poiCI.Rd | 4 - 38 files changed, 120 insertions(+), 103 deletions(-)
Title: Simulate and Sample from Ecological Interaction Networks
Description: Randomly generate a wide range of interaction networks with
specified size, average degree, 'modularity', and topological
structure. Sample nodes and links from within simulated networks
randomly, by degree, by module, or by abundance. Simulations
and sampling routines are implemented in 'FORTRAN', providing
efficient generation times even for large networks. Basic
visualization methods also included. Algorithms implemented
here are described in de Aguiar et al. (2017) <arXiv:1708.01242>.
Author: Marcus de Aguiar [aut, cph] (<https://orcid.org/0000-0003-1379-7568>>),
Erica Newman [aut] (<https://orcid.org/0000-0001-6433-8594>>),
Mathias Pires [aut] (<https://orcid.org/0000-0003-2500-4748>>),
NIMBioS [fnd],
Carl Boettiger [aut, cre] (<https://orcid.org/0000-0003-4580-091X>>)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between EcoNetGen versions 0.1.1 dated 2018-04-10 and 0.2.0 dated 2018-05-17
EcoNetGen-0.1.1/EcoNetGen/man/figures/README-unnamed-chunk-2-1.png |only EcoNetGen-0.1.1/EcoNetGen/man/figures/README-unnamed-chunk-3-1.png |only EcoNetGen-0.2.0/EcoNetGen/DESCRIPTION | 31 - EcoNetGen-0.2.0/EcoNetGen/MD5 | 37 - EcoNetGen-0.2.0/EcoNetGen/NAMESPACE | 8 EcoNetGen-0.2.0/EcoNetGen/NEWS.md | 14 EcoNetGen-0.2.0/EcoNetGen/R/NetGen.R | 122 ++++ EcoNetGen-0.2.0/EcoNetGen/R/NetPlot.R | 14 EcoNetGen-0.2.0/EcoNetGen/R/NetSampler.R |only EcoNetGen-0.2.0/EcoNetGen/README.md | 156 ++++- EcoNetGen-0.2.0/EcoNetGen/man/adj_plot.Rd | 3 EcoNetGen-0.2.0/EcoNetGen/man/figures/README-adj_plot-1.png |only EcoNetGen-0.2.0/EcoNetGen/man/figures/README-igraph_plot-1.png |only EcoNetGen-0.2.0/EcoNetGen/man/figures/README-members-1.png |only EcoNetGen-0.2.0/EcoNetGen/man/figures/README-sampled_adj-1.png |only EcoNetGen-0.2.0/EcoNetGen/man/figures/README-sampled_hairball-1.png |only EcoNetGen-0.2.0/EcoNetGen/man/figures/README-subgraph-1.png |only EcoNetGen-0.2.0/EcoNetGen/man/netgen.Rd | 70 +- EcoNetGen-0.2.0/EcoNetGen/man/netgen_v1.Rd |only EcoNetGen-0.2.0/EcoNetGen/man/netsampler.Rd |only EcoNetGen-0.2.0/EcoNetGen/src/FortranNetGen.f90 | 265 ++++------ EcoNetGen-0.2.0/EcoNetGen/src/FortranSampling.f90 |only EcoNetGen-0.2.0/EcoNetGen/src/zzz.c | 10 EcoNetGen-0.2.0/EcoNetGen/tests/testthat.R | 9 EcoNetGen-0.2.0/EcoNetGen/tests/testthat/test-netgen.R | 78 ++ EcoNetGen-0.2.0/EcoNetGen/tests/testthat/test-netsample.R |only 26 files changed, 563 insertions(+), 254 deletions(-)
Title: Deconvolute Mixed Genomes with Unknown Proportions
Description: Traditional phasing programs are limited to diploid organisms.
Our method modifies Li and Stephens algorithm with Markov chain Monte Carlo
(MCMC) approaches, and builds a generic framework that allows haplotype searches
in a multiple infection setting. This package is primarily developed as part of
the Pf3k project, which is a global collaboration using the latest
sequencing technologies to provide a high-resolution view of natural variation
in the malaria parasite Plasmodium falciparum. Parasite DNA are extracted from
patient blood sample, which often contains more than one parasite strain, with
unknown proportions. This package is used for deconvoluting mixed haplotypes,
and reporting the mixture proportions from each sample.
Author: Joe Zhu [aut, cre, cph],
Jacob Almagro-Garcia [aut, cph],
Gil McVean [aut, cph],
University of Oxford [cph],
Yinghan Liu [ctb],
CodeCogs Zyba Ltd [com, cph],
Deepak Bandyopadhyay [com, cph],
Lutz Kettner [com, cph]
Maintainer: Joe Zhu <joe.zhu@well.ox.ac.uk>
Diff between DEploid versions 0.4.4 dated 2017-08-31 and 0.5.0 dated 2018-05-17
DESCRIPTION | 12 MD5 | 46 +- NAMESPACE | 2 build/vignette.rds |binary inst/doc/dEploid-Arguments.html | 20 src/DEploid/dEploid.cpp | 12 src/DEploid/dEploidIO.cpp | 164 ++++++- src/DEploid/dEploidIO.hpp | 63 ++ src/DEploid/exceptions.hpp | 10 src/DEploid/export/dEploidIOExport.cpp | 162 ++++++- src/DEploid/export/dEploidIOExportPosteriorProb.cpp | 2 src/DEploid/export/writeMcmcRelated.cpp | 11 src/DEploid/global.h | 4 src/DEploid/ibd.cpp | 427 +++++++++++++++++++- src/DEploid/ibd.hpp | 95 +++- src/DEploid/mcmc.cpp | 319 +++----------- src/DEploid/mcmc.hpp | 43 -- src/DEploid/panel.cpp | 24 + src/DEploid/panel.hpp | 23 + src/DEploid/updateHap.cpp | 2 src/DEploid/updateHap.hpp | 2 src/DEploid/variantIndex.hpp | 1 src/dEploidr.cpp | 4 tests/testthat/test-DEploid_tools.R | 12 24 files changed, 1032 insertions(+), 428 deletions(-)
Title: Classes and Methods for Cross Validation of "Class Prediction"
Algorithms
Description: Defines classes and methods to cross-validate various
binary classification algorithms used for "class prediction"
problems.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between CrossValidate versions 2.3.1 dated 2017-08-04 and 2.3.2 dated 2018-05-17
CrossValidate-2.3.1/CrossValidate/man/CrossVal-package.Rd |only CrossValidate-2.3.2/CrossValidate/DESCRIPTION | 8 +- CrossValidate-2.3.2/CrossValidate/MD5 | 17 ++--- CrossValidate-2.3.2/CrossValidate/NEWS | 6 + CrossValidate-2.3.2/CrossValidate/R/xv02-CrossVal.R | 24 +++---- CrossValidate-2.3.2/CrossValidate/build/vignette.rds |binary CrossValidate-2.3.2/CrossValidate/inst/doc/CrossVal.pdf |binary CrossValidate-2.3.2/CrossValidate/man/CrossVal-class.Rd | 45 ++++++++++++-- CrossValidate-2.3.2/CrossValidate/man/CrossVal.Rd | 6 - CrossValidate-2.3.2/CrossValidate/man/balancedSplit.Rd | 3 10 files changed, 73 insertions(+), 36 deletions(-)
Title: Bayesian Modeling via Goodness-of-Fit
Description: A Bayesian data modeling scheme that performs four interconnected tasks: (i) characterizes the uncertainty of the elicited parametric prior; (ii) provides exploratory diagnostic for checking prior-data conflict; (iii) computes the final statistical prior density estimate; and (iv) executes macro- and micro-inference. Primary reference is Mukhopadhyay, S. and Fletcher, D. (2018, Technical Report, <arXiv:1802.00474>).
Author: Subhadeep Mukhopadhyay, Douglas Fletcher
Maintainer: Doug Fletcher <tug25070@temple.edu>
Diff between BayesGOF versions 3.0 dated 2018-04-13 and 4.0 dated 2018-05-17
DESCRIPTION | 8 +- MD5 | 49 +++++++++-------- R/DS.macro.inf.R | 12 ++-- R/DS.macro.inf.bbu.R | 109 ++++++++++++++-------------------------- R/DS.macro.inf.nnu.R | 91 +++++++++++++++++---------------- R/DS.macro.inf.pge.R | 90 +++++++++++++++++++-------------- R/DS.macro.inf.pgu.R | 74 +++++++++++++++------------ R/DS.missing.species.R |only R/DS.posterior.reduce.R | 6 +- R/DS.prior.R | 4 - R/DS.prior.pgu.R | 5 + R/DS.sampler.post.R | 3 - R/gMLE.pg.R | 28 +++++----- R/rPPD.ds.R |only build/partial.rdb |binary data/steroid.rda |only inst/doc/vignette_BayesGOF.R | 15 ++++- inst/doc/vignette_BayesGOF.Rmd | 29 +++++++--- inst/doc/vignette_BayesGOF.html | 30 +++++++---- man/DS.macro.inf.Rd | 4 - man/DS.micro.inf.Rd | 2 man/DS.missing.species.Rd |only man/DS.posterior.reduce.Rd | 4 - man/DS.prior.Rd | 7 +- man/DS.sampler.Rd | 1 man/gMLE.pg.Rd | 6 +- man/steroid.Rd |only vignettes/vignette_BayesGOF.Rmd | 29 +++++++--- 28 files changed, 330 insertions(+), 276 deletions(-)
Title: Tools for Antitrust Practitioners
Description: A collection of tools for antitrust practitioners, including the ability to calibrate different consumer demand systems and simulate the effects of mergers under different competitive regimes.
Author: Charles Taragin and Michael Sandfort
Maintainer: Charles Taragin <charles.taragin@usdoj.gov>
Diff between antitrust versions 0.99.7 dated 2018-04-11 and 0.99.8 dated 2018-05-17
DESCRIPTION | 10 MD5 | 78 +- R/Antitrust.R | 10 R/Bertrand.R | 68 +- R/Cournot.R | 52 + R/Stackelberg.R | 881 +++++++++++++++---------------- R/aids.R | 1173 ++++++++++++++++++++++-------------------- R/auction2ndlogit.R | 14 R/auction2ndlogitALM.R | 7 R/bert.R | 11 R/ces.R | 554 ++++++++++--------- R/cesALM.R | 10 R/cesNests.R | 849 +++++++++++++++--------------- R/linear.R | 4 R/logit.R | 942 +++++++++++++++++---------------- R/logitALM.R | 7 R/logitCap.R | 697 ++++++++++++------------ R/logitCapALM.R |only R/loglin.R | 520 +++++++++--------- R/pcaids.R | 3 R/pcaidsNests.R | 3 build/partial.rdb |only build/vignette.rds |binary inst/antitrust_shiny/server.R | 220 ++++++- inst/antitrust_shiny/ui.R | 33 - inst/doc/manual.Rnw | 11 inst/doc/manual.pdf |binary man/AIDS-class.Rd | 203 +++---- man/Bertrand.Rd | 10 man/CV-methods.Rd | 22 man/Logit-class.Rd | 18 man/LogitCap-class.Rd | 18 man/aids.Rd | 9 man/antitrust-package.Rd | 36 - man/antitrust_shiny.Rd | 2 man/auction2ndlogit.Rd | 3 man/ces.Rd | 15 man/cmcr-methods.Rd | 3 man/logit.Rd | 60 +- man/other-methods.Rd | 31 - vignettes/manual.Rnw | 11 41 files changed, 3524 insertions(+), 3074 deletions(-)
Title: The Tail-Rank Statistic
Description: Implements the tail-rank statistic for selecting biomarkers
from a microarray data set, an efficient nonparametric test focused
on the distributional tails. See
<http://bioinformatics.mdanderson.org/TailRank/tolstoy-new.pdf>.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between TailRank versions 3.2.0 dated 2018-02-14 and 3.2.1 dated 2018-05-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 7 +++++++ R/tail-rank-power.R | 8 ++++---- R/tail-rank-test.R | 24 ++++++++++++------------ build/vignette.rds |binary inst/doc/betabinomial.pdf |binary inst/doc/tailrank.pdf |binary 8 files changed, 34 insertions(+), 27 deletions(-)
Title: Boost Mutex Functionality in R
Description: Boost mutex functionality in R.
Author: Michael J. Kane <kaneplusplus@gmail.com>
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between synchronicity versions 1.3.2 dated 2018-02-12 and 1.3.4 dated 2018-05-17
DESCRIPTION | 7 ++++--- MD5 | 4 ++-- man/synchronicity-package.Rd | 3 +-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Synthesizing List of Differentially Expressed Features
Description: Performs two tests to evaluate if the
experiments are associated and returns a list of interesting
features common to all the experiments.
Author: Alberto Cassese, Marta Blangiardo
Maintainer: Alberto Cassese <alberto.cassese@maastrichtuniversity.nl>
Diff between sdef versions 1.6 dated 2015-07-06 and 1.7 dated 2018-05-17
DESCRIPTION | 9 ++++---- MD5 | 52 ++++++++++++++++++++++++----------------------- NAMESPACE | 2 - R/Tmc.R | 1 R/baymod.R | 1 R/createTable.R | 1 R/designCount.R | 1 R/designMatrix.R | 1 R/extractFeatures.R.R | 1 R/extractFeatures.T.R | 1 R/ratio.R | 1 R/sdef-internal.R |only R/simulation.R | 1 R/simulation.indep.R | 1 build |only data/Example3Lists.rda |binary data/Liver.Muscle.rda |binary man/Example3Lists.Rd | 1 man/Liver.Muscle.Rd | 1 man/Tmc.Rd | 1 man/baymod.Rd | 41 ++++++++++++++++++++++++++++--------- man/createTable.Rd | 1 man/extractFeatures.R.Rd | 1 man/extractFeatures.T.Rd | 1 man/ratio.Rd | 1 man/sdef-package.Rd | 25 +++++++++------------- man/simulation.Rd | 1 man/simulation.indep.Rd | 1 28 files changed, 76 insertions(+), 72 deletions(-)
Title: Modeling Data with Functional Programming
Description: A language extension to efficiently write functional programs in R. Syntax extensions include multi-part function definitions, pattern matching, guard statements, built-in (optional) type safety.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>
Diff between lambda.r versions 1.2.2 dated 2018-04-20 and 1.2.3 dated 2018-05-17
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/framework.R | 8 ++++---- man/lambda.r-package.Rd | 4 ++-- 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Extension to 'ggplot2'
Description: The R package 'ggplot2' is a plotting system based on the grammar of graphics.
'GGally' extends 'ggplot2' by adding several functions
to reduce the complexity of combining geometric objects with transformed data.
Some of these functions include a pairwise plot matrix, a two group pairwise plot
matrix, a parallel coordinates plot, a survival plot, and several functions to
plot networks.
Author: Barret Schloerke [aut, cre] (author for ggpairs, ggduo, ggnostic, ggts,
ggfacet, and ggally_*. Contributor for all functions.),
Jason Crowley [aut] (ggparcoord),
Di Cook [aut, ths] (ggscatmat, gglyph),
Heike Hofmann [ths],
Hadley Wickham [ths],
Francois Briatte [aut] (ggcorr, ggnet, ggnet2),
Moritz Marbach [aut] (ggnet, ggnet2),
Edwin Thoen [aut] (ggsurv),
Amos Elberg [aut] (ggnetworkmap),
Joseph Larmarange [aut] (ggcoef)
Maintainer: Barret Schloerke <schloerke@gmail.com>
Diff between GGally versions 1.3.2 dated 2017-08-02 and 1.4.0 dated 2018-05-17
GGally-1.3.2/GGally/man/require_pkgs.Rd |only GGally-1.4.0/GGally/DESCRIPTION | 15 - GGally-1.4.0/GGally/MD5 | 107 ++++---- GGally-1.4.0/GGally/NAMESPACE | 8 GGally-1.4.0/GGally/NEWS.md | 37 +++ GGally-1.4.0/GGally/R/find-combo.R | 2 GGally-1.4.0/GGally/R/gg-plots.R | 204 ++++++++++------- GGally-1.4.0/GGally/R/ggcoef.R | 24 +- GGally-1.4.0/GGally/R/ggfacet.R | 43 +-- GGally-1.4.0/GGally/R/ggmatrix.R | 8 GGally-1.4.0/GGally/R/ggmatrix_gtable.R | 40 ++- GGally-1.4.0/GGally/R/ggmatrix_print.R | 2 GGally-1.4.0/GGally/R/ggmatrix_progress.R |only GGally-1.4.0/GGally/R/ggnet.R | 13 - GGally-1.4.0/GGally/R/ggnet2.R | 14 - GGally-1.4.0/GGally/R/ggnetworkmap.R | 9 GGally-1.4.0/GGally/R/ggnostic.R | 18 - GGally-1.4.0/GGally/R/ggpairs.R | 6 GGally-1.4.0/GGally/R/ggpairs_add.R | 115 +++++---- GGally-1.4.0/GGally/R/ggpairs_internal_plots.R | 32 +- GGally-1.4.0/GGally/R/ggparcoord.R | 8 GGally-1.4.0/GGally/R/ggscatmat.R | 1 GGally-1.4.0/GGally/R/ggsurv.R | 2 GGally-1.4.0/GGally/R/utils.R | 9 GGally-1.4.0/GGally/build/vignette.rds |binary GGally-1.4.0/GGally/man/eval_data_col.Rd |only GGally-1.4.0/GGally/man/ggally_nostic_cooksd.Rd | 7 GGally-1.4.0/GGally/man/ggally_nostic_hat.Rd | 10 GGally-1.4.0/GGally/man/ggally_smooth.Rd | 9 GGally-1.4.0/GGally/man/ggcoef.Rd | 12 - GGally-1.4.0/GGally/man/ggduo.Rd | 5 GGally-1.4.0/GGally/man/ggfacet.Rd | 43 +-- GGally-1.4.0/GGally/man/ggmatrix.Rd | 6 GGally-1.4.0/GGally/man/ggmatrix_gtable.Rd | 8 GGally-1.4.0/GGally/man/ggmatrix_progress.Rd |only GGally-1.4.0/GGally/man/ggnetworkmap.Rd | 3 GGally-1.4.0/GGally/man/ggnostic.Rd | 4 GGally-1.4.0/GGally/man/ggpairs.Rd | 5 GGally-1.4.0/GGally/man/is_horizontal.Rd |only GGally-1.4.0/GGally/man/mapping_string.Rd |only GGally-1.4.0/GGally/man/mapping_swap_x_y.Rd |only GGally-1.4.0/GGally/man/print.ggmatrix.Rd | 2 GGally-1.4.0/GGally/man/require_namespaces.Rd |only GGally-1.4.0/GGally/tests/testthat/data |only GGally-1.4.0/GGally/tests/testthat/test-crosstalk.R | 89 +++---- GGally-1.4.0/GGally/tests/testthat/test-gg-plots.R | 30 ++ GGally-1.4.0/GGally/tests/testthat/test-ggcoef.R | 1 GGally-1.4.0/GGally/tests/testthat/test-ggcorr.R | 12 - GGally-1.4.0/GGally/tests/testthat/test-ggfacet.R | 75 +++--- GGally-1.4.0/GGally/tests/testthat/test-gglegend.R | 9 GGally-1.4.0/GGally/tests/testthat/test-gglyph.R | 4 GGally-1.4.0/GGally/tests/testthat/test-ggmatrix.R | 16 + GGally-1.4.0/GGally/tests/testthat/test-ggnet.R | 5 GGally-1.4.0/GGally/tests/testthat/test-ggnetworkmap.R | 58 +++- GGally-1.4.0/GGally/tests/testthat/test-ggnostic.R | 10 GGally-1.4.0/GGally/tests/testthat/test-ggparcoord.R | 31 +- GGally-1.4.0/GGally/tests/testthat/test-ggsurv.R | 8 GGally-1.4.0/GGally/tests/testthat/test-utils.R | 19 - GGally-1.4.0/GGally/tests/testthat/test-zzz_ggpairs.R | 77 ++++-- 59 files changed, 776 insertions(+), 499 deletions(-)
Title: Create Guitar Tablature
Description: Creates guitar tablature from R code by providing functions for describing and organizing musical structures and wrapping around the 'LilyPond' backend (<http://lilypond.org>).
'LilyPond' is open source music engraving software for generating high quality sheet music based on markup language. 'tabr' provides a wrapper around this
software and generates files following the 'LilyPond' markup syntax to be subsequently processed by 'LilyPond' into sheet music pdf files.
A standalone 'LilyPond' file can be created or the package can make a system call to 'LilyPond' directly to render the guitar tablature output.
While 'LilyPond' caters to sheet music in general, 'tabr' is focused on leveraging it specifically for creating quality guitar tablature.
'tabr' offers nominal MIDI file support in addition to its focus on tablature transcription. See the 'tuneR' package for more general use of MIDI files in R.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <mfleonawicz@alaska.edu>
Diff between tabr versions 0.1.2 dated 2018-04-18 and 0.2.0 dated 2018-05-17
DESCRIPTION | 14 ++++---- MD5 | 36 ++++++++++----------- NAMESPACE | 2 + NEWS.md | 13 +++++++ R/helpers.R | 20 +++++++++-- R/sf.R | 20 ++++++++++- R/tracks.R | 2 - R/zzz.R | 11 ++++-- README.md | 71 +++++++++++++++++++++++++++++++----------- build/vignette.rds |binary inst/doc/tabr-basics.R | 11 ++++-- inst/doc/tabr-basics.Rmd | 26 +++++++++++---- inst/doc/tabr-basics.html | 20 ++++++++--- man/sf_phrase.Rd | 15 +++++++- man/tuplet.Rd | 10 ++++- tests/testthat/test-helpers.R | 12 +++++++ tests/testthat/test-outputs.R | 2 - tests/testthat/test-sf.R | 8 ++++ vignettes/tabr-basics.Rmd | 26 +++++++++++---- 19 files changed, 234 insertions(+), 85 deletions(-)
Title: Tools for Simulation Studies in Parallel
Description: Tools for setting up ("design"), conducting, and evaluating
large-scale simulation studies with graphics and tables, including
parallel computations.
Author: Marius Hofert and Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Marius Hofert <marius.hofert@uwaterloo.ca>
Diff between simsalapar versions 1.0-9 dated 2016-02-12 and 1.0-10 dated 2018-05-17
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/grid-stuff.R | 2 +- R/tryCatchWE.R | 11 +++-------- build/partial.rdb |binary demo/TGforecasts.R | 2 +- man/doApply.Rd | 1 - man/simsalapar-package.Rd | 26 +++++++------------------- tests/tstTGforecasts.R | 21 +++++++++++++-------- 9 files changed, 37 insertions(+), 50 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial vector data. Binds
to 'GDAL' for reading and writing data, to 'GEOS' for geometrical operations, and to 'PROJ' for projection
conversions and datum transformations.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>>),
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>>),
Kirill Müller [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 0.6-2 dated 2018-04-25 and 0.6-3 dated 2018-05-17
DESCRIPTION | 24 ++--- MD5 | 121 +++++++++++++++--------------- NAMESPACE | 3 NEWS.md | 30 +++++-- R/RcppExports.R | 12 -- R/aggregate.R | 8 + R/cast_sfc.R | 1 R/crop.R | 2 R/db.R | 3 R/geom.R | 63 +++++++++------ R/init.R | 2 R/plot.R | 121 ++++++++++++++++++++---------- R/read.R | 12 +- R/sgbp.R | 5 + R/tidyverse.R | 61 ++++++++------- build/vignette.rds |binary data/bgmap.rda |binary inst/doc/sf1.html | 12 +- inst/doc/sf2.html | 6 - inst/doc/sf4.html | 2 inst/doc/sf5.R | 6 - inst/doc/sf5.Rmd | 14 +-- inst/doc/sf5.html | 76 +++++++++--------- inst/doc/sf6.Rmd | 5 - inst/doc/sf6.html | 7 - inst/docker/devel/Dockerfile | 24 +++-- inst/docker/gdal22/Dockerfile | 16 ++- inst/docker/lowest |only man/geos_unary.Rd | 6 - man/plot.Rd | 16 ++- man/st_crop.Rd | 2 man/stars.Rd | 12 +- man/tidyverse.Rd | 13 ++- src/RcppExports.cpp | 37 ++------- src/gdal.cpp | 2 src/gdal_utils.cpp | 21 ++--- src/gdal_write.cpp | 4 src/geos.cpp | 86 +++++++-------------- src/wkb.cpp | 10 +- tests/aggregate.Rout.save | 8 - tests/dplyr.R | 6 - tests/dplyr.Rout.save | 12 +- tests/empty.Rout.save | 18 ++-- tests/gdal_geom.Rout.save | 12 ++ tests/geos.R | 2 tests/geos.Rout.save | 21 ++++- tests/plot.Rout.save | 12 +- tests/read.R | 10 ++ tests/read.Rout.save | 24 +++++ tests/sfc.Rout.save | 8 - tests/testthat.Rout.save | 10 +- tests/testthat/test_deprecated-db.R | 2 tests/testthat/test_gdal.R | 7 + tests/testthat/test_geos.R | 8 - tests/testthat/test_postgis_ODBC.R | 1 tests/testthat/test_postgis_RPostgreSQL.R | 1 tests/testthat/test_postgis_RPostgres.R | 1 tests/testthat/test_read.R | 2 tests/testthat/test_sp.R | 1 tests/testthat/test_write.R | 2 vignettes/sf5.Rmd | 14 +-- vignettes/sf6.Rmd | 5 - 62 files changed, 579 insertions(+), 453 deletions(-)
Title: Hierarchical Modeling and Frequency Method Checking on
Overdispersed Gaussian, Poisson, and Binomial Data
Description: We utilize approximate Bayesian machinery to fit two-level conjugate hierarchical models on overdispersed Gaussian, Poisson, and Binomial data and evaluates whether the resulting approximate Bayesian interval estimates for random effects meet the nominal confidence levels via frequency coverage evaluation. The data that Rgbp assumes comprise observed sufficient statistic for each random effect, such as an average or a proportion of each group, without population-level data. The approximate Bayesian tool equipped with the adjustment for density maximization produces approximate point and interval estimates for model parameters including second-level variance component, regression coefficients, and random effect. For the Binomial data, the package provides an option to produce posterior samples of all the model parameters via the acceptance-rejection method. The package provides a quick way to evaluate coverage rates of the resultant Bayesian interval estimates for random effects via a parametric bootstrapping, which we call frequency method checking.
Author: Joseph Kelly, Hyungsuk Tak, and Carl Morris
Maintainer: Joseph Kelly <josephkelly@post.harvard.edu>
Diff between Rgbp versions 1.1.2 dated 2017-06-05 and 1.1.3 dated 2018-05-17
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 2 +- R/br.R | 10 +++++----- man/Rgbp-package.Rd | 4 ++-- 5 files changed, 17 insertions(+), 17 deletions(-)
More information about PortfolioAnalytics at CRAN
Permanent link
Title: Phylogenetic Monte Carlo
Description: Monte Carlo based model choice for applied phylogenetics of
continuous traits. Method described in Carl Boettiger, Graham Coop,
Peter Ralph (2012) Is your phylogeny informative? Measuring
the power of comparative methods, Evolution 66 (7)
2240-51. doi:10.1111/j.1558-5646.2011.01574.x.
Author: Carl Boettiger [aut, cre]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between pmc versions 1.0.2 dated 2016-06-13 and 1.0.3 dated 2018-05-17
DESCRIPTION | 8 MD5 | 27 +- NEWS | 5 README.md | 60 +++--- build/vignette.rds |binary inst/CITATION | 2 inst/doc/pmc_tutorial.Rmd | 2 inst/doc/pmc_tutorial.html | 429 +++++++++++++++++++++++++++++++++------------ man/anoles.Rd | 1 man/figures |only man/pmc.Rd | 2 man/pmc_fit.Rd | 1 man/simulate.gfit.Rd | 1 man/tree.Rd | 1 man/update.gfit.Rd | 1 15 files changed, 375 insertions(+), 165 deletions(-)
Title: Converting Odds Ratio to Relative Risk in Cohort Studies with
Partial Data Information
Description: Convert odds ratio to relative risk in cohort studies with partial data information.
Author: Zhu Wang
Maintainer: Zhu Wang <zwang@connecticutchildrens.org>
Diff between orsk versions 1.0-3 dated 2017-04-28 and 1.0-4 dated 2018-05-17
orsk-1.0-3/orsk/man/orsk-package.Rd |only orsk-1.0-4/orsk/DESCRIPTION | 10 +++++----- orsk-1.0-4/orsk/MD5 | 11 +++++------ orsk-1.0-4/orsk/NEWS | 7 +++++++ orsk-1.0-4/orsk/build/vignette.rds |binary orsk-1.0-4/orsk/inst/doc/orsk_demo.pdf |binary orsk-1.0-4/orsk/man/orsk.Rd | 3 ++- 7 files changed, 19 insertions(+), 12 deletions(-)
Title: Internet Memes for Data Analysts
Description: Generates internet memes that optionally include a superimposed inset plot and other atypical features,
combining the visual impact of an attention-grabbing meme with graphic results of data analysis.
The package differs from related packages that focus on imitating and reproducing standard memes.
Some packages do this by interfacing with online meme generators whereas others achieve this natively.
This package takes the latter approach. It does not interface with online meme generators or require any authentication with external websites.
It reads images directly from local files or via URL and meme generation is done by the package.
While this is similar to the 'meme' package available on CRAN, it differs in that the focus is on
allowing for non-standard meme layouts and hybrids of memes mixed with graphs.
While this package can be used to make basic memes like an online meme generator would produce,
it caters primarily to hybrid graph-meme plots where the meme presentation can be seen as a backdrop highlighting
foreground graphs of data analysis results.
The package also provides support for an arbitrary number of meme text labels with arbitrary size, position and other attributes
rather than restricting to the standard top and/or bottom text placement.
This is useful for proper aesthetic interleaving of plots of data between meme image backgrounds and overlain text labels.
The package offers a selection of templates for graph placement and appearance with respect to the underlying meme.
Graph templates also permit additional template-specific customization.
Animated gif support is provided but this is optional and functional only if the 'magick' package is installed.
'magick' is not required unless gif functionality is desired.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <mfleonawicz@alaska.edu>
Diff between memery versions 0.4.2 dated 2018-02-13 and 0.5.0 dated 2018-05-17
DESCRIPTION | 8 +++--- MD5 | 24 +++++++++++-------- NAMESPACE | 1 NEWS.md | 11 +++++++- R/car_shiny.R |only R/inset.R | 10 +++---- R/meme.R | 38 ++++++++++++++++++++++++++++-- build/vignette.rds |binary inst/doc/memery.html | 54 +++++++++++++++++++------------------------ inst/memery.png |only man/car_shiny.Rd |only man/inset.Rd | 10 +++---- man/meme.Rd | 6 +++- tests/testthat/test-meme.R | 23 +++++++++++------- tests/testthat/test-memery.R |only 15 files changed, 118 insertions(+), 67 deletions(-)
Title: Joint Modelling of Repeated Measurements and Time-to-Event Data
Description: Analysis of repeated measurements and time-to-event data via random
effects joint models. Fits the joint models proposed by Henderson and colleagues
<doi:10.1093/biostatistics/1.4.465> (single event time) and by Williamson and
colleagues (2008) <doi:10.1002/sim.3451> (competing risks events time) to a
single continuous repeated measure. The time-to-event data is modelled using a
(cause-specific) Cox proportional hazards regression model with time-varying
covariates. The longitudinal outcome is modelled using a linear mixed effects
model. The association is captured by a latent Gaussian process. The model is
estimated using am Expectation Maximization algorithm. Some plotting functions
and the variogram are also included. This project is funded by the Medical
Research Council (Grant numbers G0400615 and MR/M013227/1).
Author: Pete Philipson [aut, cre] (<https://orcid.org/0000-0001-7846-0208>>),
Ines Sousa [aut] (<https://orcid.org/0000-0002-2712-1713>>),
Peter J. Diggle [aut] (<https://orcid.org/0000-0003-3521-5020>>),
Paula Williamson [aut] (<https://orcid.org/0000-0001-9802-6636>>),
Ruwanthi Kolamunnage-Dona [aut]
(<https://orcid.org/0000-0003-3886-6208>>),
Robin Henderson [aut],
Graeme L. Hickey [aut] (<https://orcid.org/0000-0002-4989-0054>>),
Maria Sudell [ctb],
Medical Research Council [fnd] (Grant numbers: G0400615 and
MR/M013227/1)
Maintainer: Pete Philipson <pete.philipson@northumbria.ac.uk>
Diff between joineR versions 1.2.3 dated 2018-02-06 and 1.2.4 dated 2018-05-17
DESCRIPTION | 27 ++++---- MD5 | 13 ++-- NEWS.md | 10 +++ README.md | 133 +++++++++++++++++++++++++++++------------- build/vignette.rds |binary inst/doc/competing-risks.html | 4 - inst/doc/joineR.html | 4 - tests/testthat/Rplots.pdf |only 8 files changed, 128 insertions(+), 63 deletions(-)
Title: Fraction Proliferation via a Quiescent Growth Model
Description: Functions for fitting data to a quiescent growth model,
i.e. a growth process that involves members of the population
who stop dividing or propagating.
Author: Shawn Garbett, Darren Tyson
Maintainer: Shawn Garbett <Shawn@Garbett.org>
Diff between fracprolif versions 1.0.6 dated 2015-04-27 and 1.0.7 dated 2018-05-17
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 2 ++ man/fracprolif-package.Rd | 10 ---------- 4 files changed, 9 insertions(+), 17 deletions(-)
Title: Forecast Combination Methods
Description: Provides geometric- and regression-based forecast
combination methods under a unified user interface for the packages 'ForecastCombinations'
and 'GeomComb'. Additionally, updated tools and convenience functions for data pre-processing are available in order to deal with
common problems in forecast combination (missingness, collinearity). For method details see Hsiao C, Wan SK (2014). <doi:10.1016/j.jeconom.2013.11.003>, Hansen BE (2007). <doi:10.1111/j.1468-0262.2007.00785.x>,
Elliott G, Gargano A, Timmermann A (2013). <doi:10.1016/j.jeconom.2013.04.017>,
and Clemen RT (1989). <doi:10.1016/0169-2070(89)90012-5>.
Author: Christoph E. Weiss, Gernot R. Roetzer, Eran Raviv
Maintainer: Christoph E. Weiss <info@ceweiss.com>
Diff between ForecastComb versions 1.1 dated 2017-12-17 and 1.2 dated 2018-05-17
DESCRIPTION | 6 MD5 | 57 +++---- R/comb_CSR.R | 13 + R/comb_EIG1.R | 218 +++++++++++++-------------- R/comb_EIG2.R | 239 +++++++++++++++--------------- R/comb_EIG4.R | 13 + R/comb_LAD.R | 13 + R/comb_MED.R | 222 ++++++++++++++------------- R/comb_OLS.R | 14 + R/comb_TA.R | 294 ++++++++++++++++++------------------- R/comb_WA.R | 275 +++++++++++++++++----------------- R/foreccomb.R | 6 R/predict.foreccomb_res.R |only tests/testthat/test-auto_combine.R | 2 tests/testthat/test-comb_BG.R | 45 +++++ tests/testthat/test-comb_CLS.R | 45 +++++ tests/testthat/test-comb_CSR.R | 51 ++++++ tests/testthat/test-comb_EIG1.R | 46 +++++ tests/testthat/test-comb_EIG2.R | 51 ++++++ tests/testthat/test-comb_EIG3.R | 45 +++++ tests/testthat/test-comb_EIG4.R | 51 ++++++ tests/testthat/test-comb_InvW.R | 45 +++++ tests/testthat/test-comb_LAD.R | 51 ++++++ tests/testthat/test-comb_MED.R | 51 ++++++ tests/testthat/test-comb_NG.R | 45 +++++ tests/testthat/test-comb_OLS.R | 51 ++++++ tests/testthat/test-comb_SA.R | 45 +++++ tests/testthat/test-comb_TA.R | 51 ++++++ tests/testthat/test-comb_WA.R | 51 ++++++ tests/testthat/test-foreccomb.R | 18 ++ 30 files changed, 1429 insertions(+), 685 deletions(-)
Title: Experimental Designs
Description: Package for analysis of simple experimental designs (CRD, RBD and LSD), experiments in double factorial schemes (in CRD and RBD), experiments in a split plot in time schemes (in CRD and RBD), experiments in double factorial schemes with an additional treatment (in CRD and RBD), experiments in triple factorial scheme (in CRD and RBD) and experiments in triple factorial schemes with an additional treatment (in CRD and RBD), performing the analysis of variance and means comparison by fitting regression models until the third power (quantitative treatments) or by a multiple comparison test, Tukey test, test of Student-Newman-Keuls (SNK), Scott-Knott, Duncan test, t test (LSD) and Bonferroni t test (protected LSD)(qualitative treatments); residual analysis (Ferreira, Cavalcanti and Nogueira, 2014) <doi:10.4236/am.2014.519280>.
Author: Eric Batista Ferreira, Portya Piscitelli Cavalcanti, Denismar Alves Nogueira
Maintainer: Eric Batista Ferreira <eric.ferreira@unifal-mg.edu.br>
Diff between ExpDes versions 1.1.2 dated 2013-05-07 and 1.2.0 dated 2018-05-17
ExpDes-1.1.2/ExpDes/ExpDes-Ex.R |only ExpDes-1.1.2/ExpDes/inst |only ExpDes-1.2.0/ExpDes/DESCRIPTION | 29 +---- ExpDes-1.2.0/ExpDes/MD5 | 169 +++++++++++++++++------------- ExpDes-1.2.0/ExpDes/NAMESPACE | 6 + ExpDes-1.2.0/ExpDes/R/ExpDes-internal.R |only ExpDes-1.2.0/ExpDes/R/anscombetukey.R |only ExpDes-1.2.0/ExpDes/R/bartlett.R |only ExpDes-1.2.0/ExpDes/R/ccf.R |only ExpDes-1.2.0/ExpDes/R/crd.R | 107 ++++++++++++------ ExpDes-1.2.0/ExpDes/R/fat2.ad.crd.R | 50 ++++++-- ExpDes-1.2.0/ExpDes/R/fat2.ad.rbd.R | 51 ++++++--- ExpDes-1.2.0/ExpDes/R/fat2.crd.R | 41 +++++-- ExpDes-1.2.0/ExpDes/R/fat2.rbd.R | 42 +++++-- ExpDes-1.2.0/ExpDes/R/fat3.ad.crd.R | 155 +++++++++++++++++++-------- ExpDes-1.2.0/ExpDes/R/fat3.ad.rbd.R | 153 +++++++++++++++++++-------- ExpDes-1.2.0/ExpDes/R/fat3.crd.R | 131 +++++++++++++++++------ ExpDes-1.2.0/ExpDes/R/fat3.rbd.R | 137 +++++++++++++++++------- ExpDes-1.2.0/ExpDes/R/graphics.R |only ExpDes-1.2.0/ExpDes/R/han.R |only ExpDes-1.2.0/ExpDes/R/latsd.R | 19 +++ ExpDes-1.2.0/ExpDes/R/layard.R |only ExpDes-1.2.0/ExpDes/R/levene.R |only ExpDes-1.2.0/ExpDes/R/oneilldbc.R |only ExpDes-1.2.0/ExpDes/R/oneillmathews.R |only ExpDes-1.2.0/ExpDes/R/plotres.R |only ExpDes-1.2.0/ExpDes/R/rbd.R | 62 ++++++----- ExpDes-1.2.0/ExpDes/R/reg.nl.R |only ExpDes-1.2.0/ExpDes/R/reg.poly.R | 44 ++++++- ExpDes-1.2.0/ExpDes/R/samiuddin.R |only ExpDes-1.2.0/ExpDes/R/split2.crd.R | 65 +++++++++-- ExpDes-1.2.0/ExpDes/R/split2.rbd.R | 47 ++++++-- ExpDes-1.2.0/ExpDes/R/strip.R |only ExpDes-1.2.0/ExpDes/data/est21Ad.rda |binary ExpDes-1.2.0/ExpDes/data/ex.rda |binary ExpDes-1.2.0/ExpDes/data/ex1.rda |binary ExpDes-1.2.0/ExpDes/data/ex2.rda |binary ExpDes-1.2.0/ExpDes/data/ex3.rda |binary ExpDes-1.2.0/ExpDes/data/ex4.rda |binary ExpDes-1.2.0/ExpDes/data/ex5.rda |binary ExpDes-1.2.0/ExpDes/data/ex6.rda |binary ExpDes-1.2.0/ExpDes/data/ex7.rda |binary ExpDes-1.2.0/ExpDes/data/ex8.rda |binary ExpDes-1.2.0/ExpDes/data/ex9.rda |binary ExpDes-1.2.0/ExpDes/data/ex_nl.rda |only ExpDes-1.2.0/ExpDes/data/respAd.rda |binary ExpDes-1.2.0/ExpDes/data/secaAd.rda |binary ExpDes-1.2.0/ExpDes/man/ExpDes-package.Rd | 18 +-- ExpDes-1.2.0/ExpDes/man/anscombetukey.Rd |only ExpDes-1.2.0/ExpDes/man/bartlett.Rd |only ExpDes-1.2.0/ExpDes/man/ccboot.Rd | 15 +- ExpDes-1.2.0/ExpDes/man/ccf.Rd |only ExpDes-1.2.0/ExpDes/man/crd.Rd | 45 ++++--- ExpDes-1.2.0/ExpDes/man/duncan.Rd | 19 +-- ExpDes-1.2.0/ExpDes/man/est21Ad.Rd | 8 - ExpDes-1.2.0/ExpDes/man/ex.Rd | 8 - ExpDes-1.2.0/ExpDes/man/ex1.Rd | 8 - ExpDes-1.2.0/ExpDes/man/ex2.Rd | 8 - ExpDes-1.2.0/ExpDes/man/ex3.Rd | 8 - ExpDes-1.2.0/ExpDes/man/ex4.Rd | 8 - ExpDes-1.2.0/ExpDes/man/ex5.Rd | 8 - ExpDes-1.2.0/ExpDes/man/ex6.Rd | 8 - ExpDes-1.2.0/ExpDes/man/ex7.Rd | 9 - ExpDes-1.2.0/ExpDes/man/ex8.Rd | 8 - ExpDes-1.2.0/ExpDes/man/ex9.Rd | 7 - ExpDes-1.2.0/ExpDes/man/ex_nl.Rd |only ExpDes-1.2.0/ExpDes/man/fat2.ad.crd.Rd | 27 ++-- ExpDes-1.2.0/ExpDes/man/fat2.ad.rbd.Rd | 28 ++-- ExpDes-1.2.0/ExpDes/man/fat2.crd.Rd | 28 ++-- ExpDes-1.2.0/ExpDes/man/fat2.rbd.Rd | 27 ++-- ExpDes-1.2.0/ExpDes/man/fat3.ad.crd.Rd | 28 ++-- ExpDes-1.2.0/ExpDes/man/fat3.ad.rbd.Rd | 27 ++-- ExpDes-1.2.0/ExpDes/man/fat3.crd.Rd | 27 ++-- ExpDes-1.2.0/ExpDes/man/fat3.rbd.Rd | 27 ++-- ExpDes-1.2.0/ExpDes/man/ginv.Rd | 8 - ExpDes-1.2.0/ExpDes/man/graphics.Rd |only ExpDes-1.2.0/ExpDes/man/han.Rd |only ExpDes-1.2.0/ExpDes/man/lastC.Rd | 8 - ExpDes-1.2.0/ExpDes/man/latsd.Rd | 21 +-- ExpDes-1.2.0/ExpDes/man/layard.Rd |only ExpDes-1.2.0/ExpDes/man/levene.Rd |only ExpDes-1.2.0/ExpDes/man/lsd.Rd | 19 +-- ExpDes-1.2.0/ExpDes/man/lsdb.Rd | 19 +-- ExpDes-1.2.0/ExpDes/man/oneilldbc.Rd |only ExpDes-1.2.0/ExpDes/man/oneillmathews.Rd |only ExpDes-1.2.0/ExpDes/man/order.group.Rd | 8 - ExpDes-1.2.0/ExpDes/man/order.stat.SNK.Rd | 8 - ExpDes-1.2.0/ExpDes/man/plotres.Rd |only ExpDes-1.2.0/ExpDes/man/rbd.Rd | 50 +++++--- ExpDes-1.2.0/ExpDes/man/reg.nl.Rd |only ExpDes-1.2.0/ExpDes/man/reg.poly.Rd | 11 - ExpDes-1.2.0/ExpDes/man/respAd.Rd | 8 - ExpDes-1.2.0/ExpDes/man/samiuddin.Rd |only ExpDes-1.2.0/ExpDes/man/scottknott.Rd | 19 +-- ExpDes-1.2.0/ExpDes/man/secaAd.Rd | 8 - ExpDes-1.2.0/ExpDes/man/snk.Rd | 20 +-- ExpDes-1.2.0/ExpDes/man/split2.crd.Rd | 27 ++-- ExpDes-1.2.0/ExpDes/man/split2.rbd.Rd | 25 ++-- ExpDes-1.2.0/ExpDes/man/strip.Rd |only ExpDes-1.2.0/ExpDes/man/tapply.stat.Rd | 8 - ExpDes-1.2.0/ExpDes/man/tukey.Rd | 16 +- 101 files changed, 1229 insertions(+), 766 deletions(-)
Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests.
Includes tools for stubbing 'HTTP' requests, including expected
request conditions and response conditions. Match on
'HTTP' method, query parameters, request body, headers and
more. Can be used for unit tests or outside of a testing
context.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>>),
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between webmockr versions 0.2.4 dated 2018-05-08 and 0.2.6 dated 2018-05-17
DESCRIPTION | 21 +++++--- MD5 | 12 ++-- NEWS.md | 8 +++ R/adapter-crul.R | 76 +++++++++++++++---------------- README.md | 11 ++-- tests/testthat/test-CrulAdapter.R | 64 +++++++++++++------------- tests/testthat/test-no-cassette-in-use.R | 50 ++++++++++---------- 7 files changed, 129 insertions(+), 113 deletions(-)
Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive prebuilt widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
JJ Allaire [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/shared/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/shared/jqueryui/AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Stefan Petre [ctb, cph] (Bootstrap-datepicker library),
Andrew Rowls [ctb, cph] (Bootstrap-datepicker library),
Dave Gandy [ctb, cph] (Font-Awesome font),
Brian Reavis [ctb, cph] (selectize.js library),
Kristopher Michael Kowal [ctb, cph] (es5-shim library),
es5-shim contributors [ctb, cph] (es5-shim library),
Denis Ineshin [ctb, cph] (ion.rangeSlider library),
Sami Samhuri [ctb, cph] (Javascript strftime library),
SpryMedia Limited [ctb, cph] (DataTables library),
John Fraser [ctb, cph] (showdown.js library),
John Gruber [ctb, cph] (showdown.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shiny versions 1.0.5 dated 2017-08-23 and 1.1.0 dated 2018-05-17
DESCRIPTION | 17 MD5 | 131 +- NAMESPACE | 3 NEWS.md | 73 + R/app.R | 5 R/bookmark-state.R | 14 R/bootstrap-layout.R | 2 R/bootstrap.R | 8 R/conditions.R | 357 +++++- R/imageutils.R | 93 + R/input-date.R | 7 R/input-daterange.R | 9 R/input-slider.R | 60 - R/middleware.R | 55 R/react.R | 92 + R/reactive-domains.R | 6 R/reactives.R | 207 ++- R/render-plot.R | 363 +++--- R/render-table.R | 274 ++-- R/server.R | 199 +-- R/shiny.R | 591 ++++++---- R/shinywrappers.R | 240 ++-- R/timer.R | 19 R/update-input.R | 59 R/utils.R | 132 ++ README.md | 4 inst/staticdocs/index.r | 3 inst/www/reactive-graph.html | 6 inst/www/shared/ionrangeslider/css/ion.rangeSlider.skinRound.css |only inst/www/shared/ionrangeslider/css/ion.rangeSlider.skinSquare.css |only inst/www/shared/ionrangeslider/js/ion.rangeSlider.js | 182 ++- inst/www/shared/ionrangeslider/js/ion.rangeSlider.min.js | 4 inst/www/shared/shiny.js | 193 ++- inst/www/shared/shiny.js.map | 2 inst/www/shared/shiny.min.js | 8 inst/www/shared/shiny.min.js.map | 2 man/actionButton.Rd | 1 man/checkboxGroupInput.Rd | 1 man/checkboxInput.Rd | 1 man/createRenderFunction.Rd |only man/dateInput.Rd | 6 man/dateRangeInput.Rd | 6 man/domains.Rd | 1 man/downloadButton.Rd | 1 man/fileInput.Rd | 1 man/numericInput.Rd | 1 man/observeEvent.Rd | 42 man/passwordInput.Rd | 1 man/plotOutput.Rd | 1 man/radioButtons.Rd | 1 man/renderUI.Rd | 5 man/selectInput.Rd | 1 man/session.Rd | 3 man/sliderInput.Rd | 1 man/stacktrace.Rd | 6 man/submitButton.Rd | 1 man/textAreaInput.Rd | 1 man/textInput.Rd | 1 tests/testthat/test-input-handler.R | 5 tests/testthat/test-modules.R | 11 tests/testthat/test-plot-coordmap.R | 8 tests/testthat/test-reactivity.r | 21 tests/testthat/test-stacks-deep.R |only tests/testthat/test-stacks-pruning.R |only tests/testthat/test-stacks.R | 66 - tests/testthat/test-text.R | 6 tests/testthat/test-timer.R | 23 tests/testthat/test-ui.R | 7 tests/testthat/test-utils.R | 2 69 files changed, 2440 insertions(+), 1212 deletions(-)
Title: Two-Locus Family-Based Association Test with Polytomous Outcome
Description: Performs family-based association tests with a polytomous outcome under 2-locus and 1-locus models
defined by some design matrix.
Author: Alexandre BUREAU <alexandre.bureau@msp.ulaval.ca> and Jordie Croteau
<jorcroteau@gmail.com>
Maintainer: Alexandre BUREAU <alexandre.bureau@msp.ulaval.ca>
Diff between fat2Lpoly versions 1.2.2 dated 2015-10-21 and 1.2.3 dated 2018-05-17
fat2Lpoly-1.2.2/fat2Lpoly/man/fat2Lpoly-package.Rd |only fat2Lpoly-1.2.3/fat2Lpoly/DESCRIPTION | 12 fat2Lpoly-1.2.3/fat2Lpoly/MD5 | 89 fat2Lpoly-1.2.3/fat2Lpoly/NAMESPACE | 8 fat2Lpoly-1.2.3/fat2Lpoly/R/alleles2sums.R | 88 fat2Lpoly-1.2.3/fat2Lpoly/R/calcule.poids.Chen.R | 70 fat2Lpoly-1.2.3/fat2Lpoly/R/calcule.poids.alphafixe.r | 70 fat2Lpoly-1.2.3/fat2Lpoly/R/converti.terme.R | 16 fat2Lpoly-1.2.3/fat2Lpoly/R/cov.score.interfunction.R | 90 fat2Lpoly-1.2.3/fat2Lpoly/R/cov.score.poly.R | 158 fat2Lpoly-1.2.3/fat2Lpoly/R/design.1locus.R | 56 fat2Lpoly-1.2.3/fat2Lpoly/R/design.dichotomique.R | 66 fat2Lpoly-1.2.3/fat2Lpoly/R/design.endo2disease.R | 82 fat2Lpoly-1.2.3/fat2Lpoly/R/design.full.R | 66 fat2Lpoly-1.2.3/fat2Lpoly/R/design.polytomous.R | 416 fat2Lpoly-1.2.3/fat2Lpoly/R/fat2Lpoly.R | 116 fat2Lpoly-1.2.3/fat2Lpoly/R/fat2Lpoly.withinR.R | 560 fat2Lpoly-1.2.3/fat2Lpoly/R/get.scores.pvalues.R | 144 fat2Lpoly-1.2.3/fat2Lpoly/R/ibd.terms.R | 316 fat2Lpoly-1.2.3/fat2Lpoly/R/ibd.terms.w.r | 300 fat2Lpoly-1.2.3/fat2Lpoly/R/produits.paires.R | 16 fat2Lpoly-1.2.3/fat2Lpoly/R/read.merlin.files.R | 394 fat2Lpoly-1.2.3/fat2Lpoly/R/score.poly.R | 50 fat2Lpoly-1.2.3/fat2Lpoly/R/score.poly.w.r | 62 fat2Lpoly-1.2.3/fat2Lpoly/R/scores.covs.R | 552 fat2Lpoly-1.2.3/fat2Lpoly/data/fat2Lpoly.allSNPs.rda |binary fat2Lpoly-1.2.3/fat2Lpoly/data/ped.x.all.rda |binary fat2Lpoly-1.2.3/fat2Lpoly/inst/extdata/loc1.dat | 12 fat2Lpoly-1.2.3/fat2Lpoly/inst/extdata/loc1.freq | 12 fat2Lpoly-1.2.3/fat2Lpoly/inst/extdata/loc1.ibd |32642 +++++++++--------- fat2Lpoly-1.2.3/fat2Lpoly/inst/extdata/loc1.ped | 1280 fat2Lpoly-1.2.3/fat2Lpoly/inst/extdata/loc2.dat | 12 fat2Lpoly-1.2.3/fat2Lpoly/inst/extdata/loc2.freq | 18 fat2Lpoly-1.2.3/fat2Lpoly/inst/extdata/loc2.ibd |32642 +++++++++--------- fat2Lpoly-1.2.3/fat2Lpoly/inst/extdata/loc2.ped | 1280 fat2Lpoly-1.2.3/fat2Lpoly/man/design.1locus.Rd | 102 fat2Lpoly-1.2.3/fat2Lpoly/man/design.dichotomous.Rd | 82 fat2Lpoly-1.2.3/fat2Lpoly/man/design.endo2disease.Rd | 100 fat2Lpoly-1.2.3/fat2Lpoly/man/design.full.Rd | 106 fat2Lpoly-1.2.3/fat2Lpoly/man/fat2Lpoly-internal.Rd | 52 fat2Lpoly-1.2.3/fat2Lpoly/man/fat2Lpoly.Rd | 392 fat2Lpoly-1.2.3/fat2Lpoly/man/fat2Lpoly.allSNPs.Rd | 50 fat2Lpoly-1.2.3/fat2Lpoly/man/fat2Lpoly.withinR.Rd | 174 fat2Lpoly-1.2.3/fat2Lpoly/man/get.scores.pvalues.Rd | 108 fat2Lpoly-1.2.3/fat2Lpoly/man/ped.x.all.Rd | 80 fat2Lpoly-1.2.3/fat2Lpoly/man/read.merlin.files.Rd | 182 46 files changed, 36561 insertions(+), 36562 deletions(-)
Title: Exponentially Modified Gaussian (EMG) Distribution
Description: Provides basic distribution functions for a mixture model of a Gaussian and exponential distribution.
Author: Shawn Garbett, Mark Kozdoba
Maintainer: Shawn Garbett <Shawn@Garbett.org>
Diff between emg versions 1.0.6 dated 2015-04-22 and 1.0.7 dated 2018-05-17
DESCRIPTION | 12 +++++------- LICENSE |only MD5 | 7 ++++--- R/demg.R | 11 ++--------- man/emg-package.Rd | 3 +-- 5 files changed, 12 insertions(+), 21 deletions(-)
Title: Network Diffusion Algorithms
Description: Implementation of network diffusion algorithms such as
heat diffusion or Markov random walks. Network diffusion algorithms generally
spread information in the form of node weights along the edges of a graph to other nodes.
These weights can for example be interpreted as temperature, an initial amount
of water, the activation of neurons in the brain, or the location of a random
surfer in the internet. The information (node weights) is iteratively propagated
to other nodes until a equilibrium state or stop criterion occurs.
Author: Simon Dirmeier [aut, cre]
Maintainer: Simon Dirmeier <simon.dirmeier@gmx.de>
Diff between diffusr versions 0.1.3 dated 2018-04-21 and 0.1.4 dated 2018-05-17
DESCRIPTION | 8 ++--- MD5 | 8 ++--- build/vignette.rds |binary inst/NEWS | 6 +++- inst/doc/diffusr.html | 70 +++++++++++++++++++++++++------------------------- 5 files changed, 48 insertions(+), 44 deletions(-)
Title: Semiparametric Competing Risks Regression under Interval
Censoring
Description: Semiparametric regression models for the cumulative incidence function with interval-censored competing risks data as described in Bakoyannis, Yu, & Yiannoutsos (2017) <doi:10.1002/sim.7350>. The main function fits the proportional subdistribution hazards model (Fine-Gray model), the proportional odds model, and other models that belong to the class of semiparametric generalized odds rate transformation models.
Author: Giorgos Bakoyannis <gbakogia@iu.edu>, Jun Park <jp84@iu.edu>
Maintainer: Jun Park <jp84@iu.edu>
Diff between intccr versions 1.0.1 dated 2018-04-25 and 1.0.2 dated 2018-05-17
intccr-1.0.1/intccr/R/longdat.R |only intccr-1.0.1/intccr/R/simdat.R |only intccr-1.0.2/intccr/DESCRIPTION | 8 +++--- intccr-1.0.2/intccr/MD5 | 31 +++++++++++++----------- intccr-1.0.2/intccr/R/bssmle.R | 14 +++++----- intccr-1.0.2/intccr/R/bssmle_se.R | 3 +- intccr-1.0.2/intccr/R/ciregic.R | 22 ++++++++--------- intccr-1.0.2/intccr/R/longdata.R |only intccr-1.0.2/intccr/R/pseudoHIVlong.R |only intccr-1.0.2/intccr/R/simdata.R |only intccr-1.0.2/intccr/data/pseudo.HIV.long.rda |only intccr-1.0.2/intccr/man/bssmle_se.Rd | 3 +- intccr-1.0.2/intccr/man/ciregic.Rd | 12 ++++----- intccr-1.0.2/intccr/man/longdata.Rd | 8 +++--- intccr-1.0.2/intccr/man/predict.ciregic.Rd | 2 - intccr-1.0.2/intccr/man/pseudo.HIV.long.Rd |only intccr-1.0.2/intccr/man/simdata.Rd | 8 +++--- intccr-1.0.2/intccr/man/summary.ciregic.Rd | 2 - intccr-1.0.2/intccr/man/vcov.ciregic.Rd | 2 - intccr-1.0.2/intccr/man/vcov.summary.ciregic.Rd | 2 - 20 files changed, 61 insertions(+), 56 deletions(-)
Title: R Interface for Apache Impala
Description: 'SQL' back-end to 'dplyr' for Apache Impala, the massively
parallel processing query engine for Apache 'Hadoop'. Impala enables
low-latency 'SQL' queries on data stored in the 'Hadoop' Distributed
File System '(HDFS)', Apache 'HBase', Apache 'Kudu', Amazon Simple
Storage Service '(S3)', Microsoft Azure Data Lake Store '(ADLS)',
and Dell 'EMC' 'Isilon'. See <https://impala.apache.org> for more
information about Impala.
Author: Ian Cook [aut, cre],
Cloudera [cph]
Maintainer: Ian Cook <ian@cloudera.com>
Diff between implyr versions 0.2.3 dated 2018-03-18 and 0.2.4 dated 2018-05-17
DESCRIPTION | 16 - MD5 | 16 - NEWS.md | 5 R/db-compute.R | 3 R/db-impala.R | 11 + R/src_impala.R | 4 README.md | 418 ++++++++++++++++++++++++++++++++------------ man/copy_to.Rd | 4 tests/testthat/test-paste.R | 11 + 9 files changed, 354 insertions(+), 134 deletions(-)
Title: Classes and Methods for "Class Comparison" Problems on
Microarrays
Description: Defines the classes used for "class comparison" problems
in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class
comparison includes tests for differential expression; see Simon's
book for details on typical problem types.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between ClassComparison versions 3.1.5 dated 2017-07-11 and 3.1.6 dated 2018-05-17
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- NEWS | 7 +++++++ R/cc00-bum.R | 14 +++++++------- R/cc01-ttest.R | 10 +++++----- R/cc02-EfronTibshirani.R | 14 +++++++------- R/cc03-fastlm.R | 18 +++++++++--------- R/cc04-Dudoit.R | 4 ++-- R/cc05-tnom.R | 26 +++++++++++++------------- R/cc06-Sam.R | 22 +++++++++++----------- R/cc07-twoGroupStats.R | 24 ++++++++++++------------ R/cc08-singleGroup.R | 12 ++++++------ R/cc09-smoothT.R | 20 ++++++++++---------- R/cc10-pairedT.R | 6 +++--- TODO | 2 ++ build/vignette.rds |binary inst/doc/oompa-cc.pdf |binary tests/testDiff.Rout.save | 8 ++++---- 18 files changed, 119 insertions(+), 110 deletions(-)
More information about ClassComparison at CRAN
Permanent link
Title: Tukeys Trend Test via Multiple Marginal Models
Description: Provides wrapper functions to the multiple marginal model function mmm() of package 'multcomp' to implement the trend test of Tukey, Ciminera and Heyse (1985) <DOI:10.2307/2530666> for general parametric models.
Author: Frank Schaarschmidt [aut, cre],
Christian Ritz [aut],
Ludwig Hothorn [ctb]
Maintainer: Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
Diff between tukeytrend versions 0.4 dated 2017-06-20 and 0.6 dated 2018-05-17
tukeytrend-0.4/tukeytrend/vignettes/amsmath.sty |only tukeytrend-0.4/tukeytrend/vignettes/amssymb.sty |only tukeytrend-0.4/tukeytrend/vignettes/float.sty |only tukeytrend-0.4/tukeytrend/vignettes/geometry.sty |only tukeytrend-0.4/tukeytrend/vignettes/natbib.sty |only tukeytrend-0.6/tukeytrend/DESCRIPTION | 16 tukeytrend-0.6/tukeytrend/MD5 | 19 - tukeytrend-0.6/tukeytrend/build/vignette.rds |binary tukeytrend-0.6/tukeytrend/inst/doc/ExamplesTukeytrendtest.R | 158 ++------ tukeytrend-0.6/tukeytrend/inst/doc/ExamplesTukeytrendtest.Rnw | 184 ++-------- tukeytrend-0.6/tukeytrend/inst/doc/ExamplesTukeytrendtest.pdf |binary tukeytrend-0.6/tukeytrend/vignettes/ExamplesTukeytrendtest.Rnw | 184 ++-------- tukeytrend-0.6/tukeytrend/vignettes/TukeyTrend2016.bib | 11 13 files changed, 147 insertions(+), 425 deletions(-)
Title: Post Processing of (Half-)Hourly Eddy-Covariance Measurements
Description: Standard and extensible Eddy-Covariance data post-processing includes
uStar-filtering, gap-filling, and flux-partitioning.
The Eddy-Covariance (EC) micrometeorological technique quantifies continuous
exchange fluxes of gases, energy, and momentum between an ecosystem and the atmosphere.
It is important for understanding ecosystem dynamics and upscaling exchange fluxes.
(Aubinet et al. (2012) <doi:10.1007/978-94-007-2351-1>).
This package inputs pre-processed (half-)hourly data and supports further processing.
First, a quality-check and filtering is performed based on the relationship between
measured flux and friction
velocity (uStar) to discard biased data
(Papale et al. (2006) <doi:10.5194/bg-3-571-2006>).
Second, gaps in the data are filled based on information from environmental conditions
(Reichstein et al. (2005) <doi:10.1111/j.1365-2486.2005.001002.x>).
Third, the net flux of carbon dioxide is partitioned
into its gross fluxes in and out of the ecosystem by night-time
based and day-time based approaches
(Lasslop et al. (2010) <doi:10.1111/j.1365-2486.2009.02041.x>).
Author: Department for Biogeochemical Integration at MPI-BGC, Jena, Germany
[cph],
Thomas Wutzler [aut, cre],
Markus Reichstein [aut],
Antje Maria Moffat [aut, trl],
Olaf Menzer [ctb],
Mirco Migliavacca [aut],
Kerstin Sickel [ctb, trl],
Ladislav Šigut [ctb]
Maintainer: Thomas Wutzler <twutz@bgc-jena.mpg.de>
Diff between REddyProc versions 1.1.4 dated 2018-05-06 and 1.1.5 dated 2018-05-17
DESCRIPTION | 6 MD5 | 111 +- NEWS.md |only R/DataFunctions.R | 5 R/EddyGapfilling.R | 32 R/EddyPlotting.R | 2 R/EddyUStarFilterChangePointDetection.R | 30 R/EddyUStarFilterDP.R | 41 R/Example.R | 8 R/FileHandling.R | 2 R/FileHandlingFormats.R | 5 R/GeoFunctions.R | 2 R/LRC_base.R | 27 R/LRC_nonrectangular.R | 16 R/LRC_rectangular.R | 6 R/PartitioningLasslop10.R | 31 R/variableNames.R | 2 inst/doc/useCase.html | 551 ++-------- inst/genData/DEGebExample.Rd | 8 inst/genData/REddyProc-package.Rd | 2 inst/genData/RHLightResponseCostC.Rd | 88 - man/DEGebExample.Rd | 8 man/LightResponseCurveFitter_computeCost.Rd | 4 man/LightResponseCurveFitter_fitLRC.Rd | 13 man/LightResponseCurveFitter_getOptimizedParameterPositions.Rd | 2 man/LightResponseCurveFitter_isParameterInBounds.Rd | 2 man/LightResponseCurveFitter_optimLRC.Rd | 4 man/LightResponseCurveFitter_optimLRCOnAdjustedPrior.Rd | 2 man/NonrectangularLRCFitter_predictGPP.Rd | 8 man/REddyProc-package.Rd | 2 man/RHLightResponseCostC.Rd | 10 man/RectangularLRCFitter_predictGPP.Rd | 2 man/fCalcRHfromAVPandTair.Rd | 2 man/fConvertTimeToPosix.Rd | 2 man/fLoadEuroFlux16.Rd | 5 man/fLoadTXTIntoDataframe.Rd | 2 man/getExamplePath.Rd | 4 man/getREddyProcExampleDir.Rd | 4 man/partGLControl.Rd | 8 man/partGLControlLasslopCompatible.Rd | 8 man/partGLExtractStandardData.Rd | 5 man/partitionNEEGL.Rd | 8 man/renameVariablesInDataframe.Rd | 2 man/sEddyProc_sEstUstarThreshold.Rd | 4 man/sEddyProc_sEstUstarThresholdDistribution.Rd | 14 man/sEddyProc_sFillLUT.Rd | 10 man/sEddyProc_sFillMDC.Rd | 8 man/sEddyProc_sMDSGapFillAfterUStarDistr.Rd | 4 man/sEddyProc_sPlotDailySumsY.Rd | 2 man/usControlUstarSubsetting.Rd | 2 man/usCreateSeasonFactorMonth.Rd | 2 man/usCreateSeasonFactorMonthWithinYear.Rd | 5 man/usCreateSeasonFactorYday.Rd | 6 man/usCreateSeasonFactorYdayYear.Rd | 6 man/usEstUstarThreshold.Rd | 3 tests/testthat/test_partGL.R | 12 tests/testthat/test_sEddyProc.R | 71 - 57 files changed, 505 insertions(+), 726 deletions(-)
Title: Read GenAlEx Files Directly from Excel
Description: GenAlEx is a popular Excel macro for genetic analysis and the
'poppr' R package allows import of GenAlEx formatted CSV data for genetic
data analysis in R. This package allows for the import of GenAlEx formatted
Excel files, serving as a small 'poppr' add on for those who have trouble or
simply do not want to export their data into CSV format.
Author: Zhian N. Kamvar [cre, aut] (<https://orcid.org/0000-0003-1458-7108>>),
Niklaus J. Grünwald [ths] (<https://orcid.org/0000-0003-1656-7602>>)
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between popprxl versions 0.1.3 dated 2016-12-05 and 0.1.4 dated 2018-05-17
DESCRIPTION | 20 ++++++++++---------- MD5 | 12 ++++++------ NEWS | 7 ++++++- build/vignette.rds |binary inst/doc/quickstart.html | 29 ++++++++++++++++++----------- man/popprxl.Rd | 2 +- man/read.genalexcel.Rd | 7 +++---- 7 files changed, 44 insertions(+), 33 deletions(-)
Title: Text Extraction, Rendering and Converting of PDF Documents
Description: Utilities based on 'libpoppler' for extracting text, fonts, attachments and
metadata from a PDF file. Also supports high quality rendering of PDF documents info
PNG, JPEG, TIFF format, or into raw bitmap vectors for further processing in R.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between pdftools versions 1.6 dated 2018-03-27 and 1.7 dated 2018-05-17
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NAMESPACE | 1 + NEWS | 3 +++ R/RcppExports.R | 4 ++++ R/render.R | 3 +-- R/tools.R | 6 ++++++ configure | 6 ++++++ man/pdf_render_page.Rd | 3 +-- man/pdftools.Rd | 3 +++ src/RcppExports.cpp | 14 ++++++++++++++ src/bindings.cpp | 43 +++++++++++++++++++++++++++++++++++++++++++ 12 files changed, 97 insertions(+), 19 deletions(-)
Title: Import 'OpenStreetMap' Data as Simple Features or Spatial
Objects
Description: Download and import of 'OpenStreetMap' ('OSM') data as 'sf' or 'sp'
objects. 'OSM' data are extracted from the 'Overpass' web server and
processed with very fast 'C++' routines for return to 'R'.
Author: Mark Padgham [aut, cre],
Bob Rudis [aut],
Robin Lovelace [aut],
Maëlle Salmon [aut],
Andrew Smith [ctb],
Marcin Kalicinski [ctb, cph] (Author of included RapidXML code),
Finkelstein Noam [ctb, cph] (Author of included stub.R code),
Bartnik Lukasz [ctb, cph] (Author of included stub.R code)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between osmdata versions 0.0.6 dated 2018-02-22 and 0.0.7 dated 2018-05-17
osmdata-0.0.6/osmdata/src/cleanup.cpp |only osmdata-0.0.6/osmdata/src/cleanup.h |only osmdata-0.0.7/osmdata/DESCRIPTION | 6 osmdata-0.0.7/osmdata/MD5 | 30 osmdata-0.0.7/osmdata/NEWS.md | 8 osmdata-0.0.7/osmdata/R/RcppExports.R | 12 osmdata-0.0.7/osmdata/R/opq.R | 3 osmdata-0.0.7/osmdata/R/osmdata-methods.R | 8 osmdata-0.0.7/osmdata/build/vignette.rds |binary osmdata-0.0.7/osmdata/inst/doc/osm-sf-translation.html | 713 +++++---- osmdata-0.0.7/osmdata/inst/doc/osmdata.html | 1274 ++++++++++------- osmdata-0.0.7/osmdata/src/convert-osm-rcpp.cpp | 29 osmdata-0.0.7/osmdata/src/convert-osm-rcpp.h | 4 osmdata-0.0.7/osmdata/src/osmdata-sf.cpp | 79 - osmdata-0.0.7/osmdata/src/osmdata-sp.cpp | 72 osmdata-0.0.7/osmdata/src/osmdata.h | 30 osmdata-0.0.7/osmdata/src/trace-osm.cpp | 1 17 files changed, 1412 insertions(+), 857 deletions(-)
Title: Text Processing for Small or Big Data Files
Description: It offers functions for splitting, parsing, tokenizing and creating a vocabulary for big text data files. Moreover, it includes functions for building a document-term matrix and extracting information from those (term-associations, most frequent terms). It also embodies functions for calculating token statistics (collocations, look-up tables, string dissimilarities) and functions to work with sparse matrices. Lastly, it includes functions for Word Vector Representations (i.e. 'GloVe', 'fasttext') and incorporates functions for the calculation of (pairwise) text document dissimilarities. The source code is based on 'C++11' and exported in R through the 'Rcpp', 'RcppArmadillo' and 'BH' packages.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between textTinyR versions 1.1.0 dated 2018-04-03 and 1.1.1 dated 2018-05-17
DESCRIPTION | 8 MD5 | 61 NEWS.md | 7 R/RcppExports.R | 8 R/utils.R | 54 README.md | 2 build/vignette.rds |binary inst/doc/functionality_of_textTinyR_package.html | 4 inst/doc/word_vectors_doc2vec.html | 4 man/text_file_parser.Rd | 27 src/Makevars | 2 src/RcppExports.cpp | 19 src/export_all_funcs.cpp | 162 src/init.c | 6 tests/testthat/helper-function_for_tests.R |only tests/testthat/test-TEXT_DOC_DISSIM.R | 285 tests/testthat/test-big_tokenize_transform.R | 2649 ++++--- tests/testthat/test-cluster_frequency.R | 59 tests/testthat/test-cosine.R | 137 tests/testthat/test-count_rows.R | 73 tests/testthat/test-dims.R | 82 tests/testthat/test-doc2vec.R | 395 - tests/testthat/test-jaccard_dice.R | 175 tests/testthat/test-select_predictors.R | 132 tests/testthat/test-sparse_functions_AND_read_text.R | 836 +- tests/testthat/test-term_matrix_triplet_data_global_term_weights.R | 2894 ++++---- tests/testthat/test-text_intersect.R | 376 - tests/testthat/test-token_statistics.R | 1268 ++- tests/testthat/test-tokenization_transformation.R | 1816 ++--- tests/testthat/test-tokenization_transformation_vec_documents.R | 1303 ++- tests/testthat/test-utf_locale.R | 3571 +++++----- tests/testthat/test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R | 1730 ++-- 32 files changed, 10630 insertions(+), 7515 deletions(-)
Title: Influence Measures and Diagnostic Plots for Multivariate Linear
Models
Description: Computes regression deletion diagnostics for multivariate linear models and provides some associated
diagnostic plots. The diagnostic measures include hat-values (leverages), generalized Cook's distance, and
generalized squared 'studentized' residuals. Several types of plots to detect influential observations are
provided.
Author: Michael Friendly
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between mvinfluence versions 0.8-1 dated 2018-04-08 and 0.8-3 dated 2018-05-17
DESCRIPTION | 12 +++++++----- MD5 | 11 ++++++----- NEWS | 8 ++++++++ build |only man/infIndexPlot.mlm.Rd | 2 +- man/lrPlot.Rd | 6 +++--- man/mvinfluence-package.Rd | 29 +++++++++++++---------------- 7 files changed, 38 insertions(+), 30 deletions(-)
Title: Use and Explore CRU CL v. 2.0 Climatology Elements in R
Description: Provides functions that automate downloading and importing
University of East Anglia Climate Research Unit (CRU) CL v. 2.0 climatology
data into R, facilitates the calculation of minimum temperature and maximum
temperature and formats the data into a tidy data frame as a tibble or a
list of raster stack objects for use in an R session. CRU CL v. 2.0 data
are a gridded climatology of 1961-1990 monthly means released in 2002 and
cover all land areas (excluding Antarctica) at 10 arcminutes
(0.1666667 degree) resolution. For more information see the description of
the data provided by the University of East Anglia Climate Research Unit,
<https://crudata.uea.ac.uk/cru/data/hrg/tmc/readme.txt>.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>>)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between getCRUCLdata versions 0.2.2 dated 2017-12-16 and 0.2.3 dated 2018-05-17
getCRUCLdata-0.2.2/getCRUCLdata/R/deprecated_functions.R |only getCRUCLdata-0.2.2/getCRUCLdata/man/getCRUCLdata-deprecated.Rd |only getCRUCLdata-0.2.3/getCRUCLdata/DESCRIPTION | 19 - getCRUCLdata-0.2.3/getCRUCLdata/MD5 | 16 - getCRUCLdata-0.2.3/getCRUCLdata/NAMESPACE | 4 getCRUCLdata-0.2.3/getCRUCLdata/NEWS.md | 14 getCRUCLdata-0.2.3/getCRUCLdata/R/zzz.R | 5 getCRUCLdata-0.2.3/getCRUCLdata/README.md | 10 getCRUCLdata-0.2.3/getCRUCLdata/build/vignette.rds |binary getCRUCLdata-0.2.3/getCRUCLdata/tests/testthat/test-create_stack.R | 141 ++++------ 10 files changed, 108 insertions(+), 101 deletions(-)
Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests. Developed at Cito, The Netherlands, with subsidy from the Dutch Ministry of Education, Culture, and Science.
Author: Gunter Maris, Timo Bechger, Jesse Koops, Ivailo Partchev
Maintainer: Ivailo Partchev <Ivailo.Partchev@cito.nl>
Diff between dexter versions 0.6.0 dated 2017-12-16 and 0.7.0 dated 2018-05-17
dexter-0.6.0/dexter/man/as.data.frame.prms.Rd |only dexter-0.6.0/dexter/man/coef.rim.Rd |only dexter-0.6.0/dexter/man/print.prms.Rd |only dexter-0.6.0/dexter/man/print.rim.Rd |only dexter-0.6.0/dexter/man/show_rules.Rd |only dexter-0.7.0/dexter/DESCRIPTION | 8 dexter-0.7.0/dexter/MD5 | 149 ++- dexter-0.7.0/dexter/NAMESPACE | 16 dexter-0.7.0/dexter/NEWS | 6 dexter-0.7.0/dexter/R/Rversions.R | 67 + dexter-0.7.0/dexter/R/ability.R | 153 +++ dexter-0.7.0/dexter/R/anon.R | 319 ++++---- dexter-0.7.0/dexter/R/d3c.R | 16 dexter-0.7.0/dexter/R/data_selection.R | 16 dexter-0.7.0/dexter/R/database.R | 85 -- dexter-0.7.0/dexter/R/dexter.R | 394 +++++----- dexter-0.7.0/dexter/R/dif.R | 5 dexter-0.7.0/dexter/R/enorm.R | 117 +- dexter-0.7.0/dexter/R/equating.R |only dexter-0.7.0/dexter/R/interaction_model.R | 34 dexter-0.7.0/dexter/R/misc.R | 151 ++- dexter-0.7.0/dexter/R/oplike.R | 72 + dexter-0.7.0/dexter/R/plausible_scores.R | 17 dexter-0.7.0/dexter/R/plausible_values.R | 60 + dexter-0.7.0/dexter/R/plots.R | 14 dexter-0.7.0/dexter/R/predicates.R | 11 dexter-0.7.0/dexter/R/profile_analysis.R |only dexter-0.7.0/dexter/R/shine.R | 2 dexter-0.7.0/dexter/R/tia.R | 2 dexter-0.7.0/dexter/build/vignette.rds |binary dexter-0.7.0/dexter/inst/doc/DIF_vignette.Rmd | 2 dexter-0.7.0/dexter/inst/doc/DIF_vignette.html | 23 dexter-0.7.0/dexter/inst/doc/Equating.R |only dexter-0.7.0/dexter/inst/doc/Equating.Rmd |only dexter-0.7.0/dexter/inst/doc/Equating.html |only dexter-0.7.0/dexter/inst/doc/Plausible_Values.html | 104 +- dexter-0.7.0/dexter/inst/doc/Test_Individual_differences.html | 46 - dexter-0.7.0/dexter/inst/doc/data_management.Rmd | 2 dexter-0.7.0/dexter/inst/doc/data_management.html | 79 -- dexter-0.7.0/dexter/inst/doc/dexter.Rmd | 2 dexter-0.7.0/dexter/inst/doc/dexter.html | 121 +-- dexter-0.7.0/dexter/inst/doc/profile-plots.html | 21 dexter-0.7.0/dexter/inst/extdata/dexter_sqlite.sql | 69 - dexter-0.7.0/dexter/man/DIF.Rd | 3 dexter-0.7.0/dexter/man/ability.Rd | 16 dexter-0.7.0/dexter/man/add_booklet.Rd | 25 dexter-0.7.0/dexter/man/add_item_properties.Rd | 20 dexter-0.7.0/dexter/man/add_person_properties.Rd |only dexter-0.7.0/dexter/man/coef.p2pass.Rd |only dexter-0.7.0/dexter/man/coef.prms.Rd | 6 dexter-0.7.0/dexter/man/design_as_network.Rd | 1 dexter-0.7.0/dexter/man/design_is_connected.Rd | 1 dexter-0.7.0/dexter/man/distractor_plot.Rd | 5 dexter-0.7.0/dexter/man/fit_enorm.Rd | 5 dexter-0.7.0/dexter/man/get_booklets.Rd | 2 dexter-0.7.0/dexter/man/get_design.Rd | 10 dexter-0.7.0/dexter/man/get_item_properties.Rd | 7 dexter-0.7.0/dexter/man/get_person_properties.Rd | 6 dexter-0.7.0/dexter/man/get_persons.Rd | 4 dexter-0.7.0/dexter/man/iTIA.Rd | 2 dexter-0.7.0/dexter/man/open_project.Rd | 7 dexter-0.7.0/dexter/man/plausible_values.Rd | 9 dexter-0.7.0/dexter/man/plot.p2pass.Rd |only dexter-0.7.0/dexter/man/probability_to_pass.Rd |only dexter-0.7.0/dexter/man/profile_plot.Rd | 3 dexter-0.7.0/dexter/man/profiles.Rd |only dexter-0.7.0/dexter/man/read_oplm_par.Rd | 2 dexter-0.7.0/dexter/man/start_new_project.Rd | 20 dexter-0.7.0/dexter/man/start_new_project_from_oplm.Rd | 10 dexter-0.7.0/dexter/src/deboor.c |only dexter-0.7.0/dexter/src/deboor.h |only dexter-0.7.0/dexter/src/elsymean.c | 2 dexter-0.7.0/dexter/src/packagename_init.c | 6 dexter-0.7.0/dexter/src/roger.c | 78 + dexter-0.7.0/dexter/src/roger.h | 1 dexter-0.7.0/dexter/tests/testthat/test_data_selection.R | 13 dexter-0.7.0/dexter/tests/testthat/test_database.R | 6 dexter-0.7.0/dexter/tests/testthat/test_enorm.R | 2 dexter-0.7.0/dexter/tests/testthat/test_oplike.r |only dexter-0.7.0/dexter/tests/testthat/test_plausible_scores.R | 2 dexter-0.7.0/dexter/vignettes/DIF_vignette.Rmd | 2 dexter-0.7.0/dexter/vignettes/Equating.Rmd |only dexter-0.7.0/dexter/vignettes/data_management.Rmd | 2 dexter-0.7.0/dexter/vignettes/dexter.Rmd | 2 dexter-0.7.0/dexter/vignettes/dexter.bib | 25 85 files changed, 1417 insertions(+), 1071 deletions(-)
Title: R Client for 'Datadog' API
Description: Query for metrics from 'Datadog' (<https://www.datadoghq.com/>) via its API.
Author: Hiroaki Yutani [aut, cre]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between datadogr versions 0.1.1 dated 2017-07-19 and 0.1.2 dated 2018-05-17
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NAMESPACE | 15 ++++++++------- NEWS.md | 4 ++++ R/K9_metrics.R | 42 ++++++++++++++++++++++++++++++++++++++++++ R/util.R | 5 +++++ man/k9_post_metric.Rd |only 7 files changed, 69 insertions(+), 16 deletions(-)
Title: Qualitative Palettes with Many Colors
Description: Tools for creating, viewing, and assessing qualitative
palettes with many (20-30 or more) colors.
Author: Kevin R. Coombes, Guy Brock
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between Polychrome versions 1.1.0 dated 2018-04-11 and 1.1.1 dated 2018-05-17
DESCRIPTION | 8 MD5 | 36 +- NEWS | 25 + build/vignette.rds |binary data/Dark24.rda |binary data/Light24.rda |binary data/alphabet.rda |binary data/colorsafe.rda |binary data/glasbey.rda |binary data/iscc.rda |binary data/palette36.rda |binary inst/doc/color-deficits.html | 532 ++++++++++++++++++++----------- inst/doc/creatingPalettes.Rmd | 4 inst/doc/creatingPalettes.html | 697 ++++++++++++++++++++++++++++------------- inst/doc/polychrome.Rmd | 5 inst/doc/polychrome.html | 397 +++++++++++++++++------ man/colorDeficit.Rd | 8 vignettes/creatingPalettes.Rmd | 4 vignettes/polychrome.Rmd | 5 19 files changed, 1178 insertions(+), 543 deletions(-)
Title: 'Jupyter' Display Machinery
Description: An interface to the rich display capabilities of 'Jupyter' front-ends (e.g. 'Jupyter Notebook') <https://jupyter.org>.
Designed to be used from a running 'IRkernel' session <https://irkernel.github.io>.
Author: Thomas Kluyver [aut, cph],
Philipp Angerer [aut, cph, cre],
Jan Schulz [aut, cph]
Maintainer: Philipp Angerer <phil.angerer@gmail.com>
Diff between IRdisplay versions 0.4.4 dated 2016-08-02 and 0.5.0 dated 2018-05-17
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 1 + R/display.r | 6 +----- R/display_images.r | 2 +- R/utils.r | 24 ++++++++++++++++++++++++ man/IRdisplay-options.Rd | 2 +- man/display.Rd | 1 - man/display_-less-than-image-greater-than.Rd | 5 ++--- man/display_-less-than-text-greater-than.Rd | 7 +++---- man/publish_mimebundle.Rd | 1 - 11 files changed, 49 insertions(+), 31 deletions(-)
Title: Interface to the Australian Statistical Geography Standard
Description: The Australian Statistical Geography Standard ('ASGS') is
a set of shapefiles by the Australian Bureau of Statistics. This package
provides an interface to those shapefiles, as well as methods for converting
coordinates to shapefiles.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between ASGS.foyer versions 0.2.0 dated 2018-04-30 and 0.2.1 dated 2018-05-17
DESCRIPTION | 8 +-- MD5 | 6 +- NEWS.md | 26 ++++++----- tests/testthat/test-install_asgs.R | 86 ++++++++++++++++++------------------- 4 files changed, 66 insertions(+), 60 deletions(-)
Title: A Platform for the Study of Macro-Ecology of Life History Traits
Description: Tools for easy generation of (life-history) traits maps based on
species range (extent-of-occurrence) maps.
Author: Mihai Valcu [aut, cre],
James Dale [aut],
Joan Maspons [ctb]
Maintainer: Mihai Valcu <valcu@orn.mpg.de>
Diff between rangeMapper versions 0.3-1 dated 2017-01-09 and 0.3-3 dated 2018-05-17
DESCRIPTION | 9 +- MD5 | 94 +++++++++++------------ NAMESPACE | 1 NEWS | 8 + R/AAA.R | 4 R/AllClasses.R | 2 R/MapFetch-methods.R | 36 +++++--- R/MapProcess-methods.R | 8 - R/MapRemove-methods.R | 2 R/MapSave-methods.R | 37 ++++----- R/bioSave-methods.R | 4 R/metadataUpdate-methods.R | 8 - R/projectINI-methods.R | 8 - build/vignette.rds |binary inst/doc/Appendix_S2_Valcu_et_al_2012.html | 66 ++++++++-------- inst/doc/Appendix_S3_Valcu_et_al_2012.html | 33 ++++---- inst/doc/Appendix_S4_Valcu_et_al_2012.html | 28 +++--- inst/doc/Appendix_S5_Valcu_et_al_2012.html | 46 +++++------ man/View_rmap.Rd | 1 man/WKT2SpatialPolygonsDataFrame.Rd | 1 man/as.rmap.frame.data.table.Rd | 5 - man/assemblageFetch.Rd | 3 man/bio.save.Rd | 3 man/canvas.save.Rd | 3 man/global.bbox.save.Rd | 3 man/gridSize.save.Rd | 4 man/metadata.update.Rd | 1 man/palette_rangemap.Rd | 1 man/plot-SpatialPixelsRangeMap-missing-method.Rd | 1 man/plot-rmap.frame-missing-method.Rd | 1 man/processRanges.Rd | 6 - man/ramp.Rd | 1 man/rangeFetch.Rd | 1 man/rangeMap.export.Rd | 1 man/rangeMap.fetch.Rd | 3 man/rangeMap.save.Rd | 5 - man/rangeMap.start.Rd | 3 man/rangeMapProjInfo.Rd | 1 man/rangeMapper.Rd | 1 man/rangeOverlay.Rd | 1 man/rangeTraits.Rd | 7 - man/rm.rangeMapper.Rd | 1 man/selectShpFiles.Rd | 1 man/tables-SQLiteConnection-method.Rd | 1 man/tables-methods.Rd | 1 man/theme_rangemap.Rd | 1 man/wrens.Rd | 1 tests/testthat/test-4_save.R | 5 - 48 files changed, 230 insertions(+), 232 deletions(-)
Title: Generalized Hermite Distribution
Description: Probability functions and other utilities for the generalized Hermite distribution.
Author: David Moriña, Manuel Higueras, Pedro Puig and María Oliveira
Maintainer: David Moriña Soler <david.morina@uab.cat>
Diff between hermite versions 1.1.1 dated 2015-11-03 and 1.1.2 dated 2018-05-17
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/hermite-package.Rd | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Simulation of Simple and Complex Survival Data
Description: Simulation of simple and complex survival data including recurrent and multiple events and competing risks.
Author: David Moriña (Centre for Research in Environmental Epidemiology, CREAL) and Albert Navarro (Universitat Autònoma de Barcelona)
Maintainer: David Moriña Soler <david.morina@uab.cat>
Diff between survsim versions 1.1.4 dated 2015-10-16 and 1.1.5 dated 2018-05-17
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/survsim-package.Rd | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Pacote Experimental Designs (Portuguese)
Description: Pacote destinado a analise de delineamentos experimentais simples (DIC, DBC e DQL), experimentos em esquema de fatorial duplo (em DIC e DBC), experimentos em esquema de parcelas subdivididas no tempo (em DIC e DBC), experimentos em esquema de fatorial duplo com um tratamento adicional (em DIC e DBC), experimentos em esquema de fatorial triplo (em DIC e DBC) e experimentos em esquema de fatorial triplo com um tratamento adicional (em DIC e DBC); realizando a analise de variancia e comparacao de medias pelo ajuste de modelos de regressao ate o terceiro grau (tratamentos quantitativos) ou por testes de comparacao multipla: teste de Tukey, teste de Student-Newman-Keuls (SNK), teste de Scott-Knott, teste de Duncan, teste t (LSD), teste t de Bonferroni (LSD protegido) e teste Bootstrap (tratamentos qualitativos); analise de residuos (Ferreira, Cavalcanti e Nogueira (2014) <doi:10.4236/am.2014.519280>).
Author: Eric Batista Ferreira, Portya Piscitelli Cavalcanti, Denismar Alves Nogueira
Maintainer: Eric Batista Ferreira <eric.ferreira@unifal-mg.edu.br>
Diff between ExpDes.pt versions 1.1.2 dated 2013-05-07 and 1.2.0 dated 2018-05-17
ExpDes.pt-1.1.2/ExpDes.pt/ExpDes.pt-Ex.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/ccF.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/ccboot.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/dbc.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/dic.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/dql.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/duncan.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/fat2.ad.dbc.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/fat2.ad.dic.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/fat2.dbc.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/fat2.dic.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/fat3.ad.dbc.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/fat3.ad.dic.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/fat3.dbc.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/fat3.dic.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/ginv.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/lastC.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/lsd.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/lsdb.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/order.group.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/order.stat.SNK.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/psub2.dbc.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/psub2.dic.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/reg.poly.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/scottknott.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/snk.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/tapply.stat.R |only ExpDes.pt-1.1.2/ExpDes.pt/R/tukey.R |only ExpDes.pt-1.1.2/ExpDes.pt/inst |only ExpDes.pt-1.1.2/ExpDes.pt/man/ccF.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/DESCRIPTION | 28 --- ExpDes.pt-1.2.0/ExpDes.pt/MD5 | 193 +++++++++++---------- ExpDes.pt-1.2.0/ExpDes.pt/NAMESPACE | 6 ExpDes.pt-1.2.0/ExpDes.pt/R/anscombetukey.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/bartlett.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/ccboot.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/ccf.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/dbc.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/dic.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/dql.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/duncan.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/faixas.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/fat2.ad.dbc.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/fat2.ad.dic.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/fat2.dbc.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/fat2.dic.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/fat3.ad.dbc.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/fat3.ad.dic.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/fat3.dbc.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/fat3.dic.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/ginv.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/graficos.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/han.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/lastC.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/layard.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/levene.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/lsd.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/lsdb.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/oneilldbc.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/oneillmathews.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/order.group.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/plotres.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/psub2.dbc.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/psub2.dic.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/reg.nl.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/reg.poly.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/samiuddin.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/scottknott.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/snk.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/tapply.stat.r |only ExpDes.pt-1.2.0/ExpDes.pt/R/tukey.r |only ExpDes.pt-1.2.0/ExpDes.pt/data/est21Ad.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/ex.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/ex1.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/ex2.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/ex3.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/ex4.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/ex5.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/ex6.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/ex7.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/ex8.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/ex9.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/ex_nl.rda |only ExpDes.pt-1.2.0/ExpDes.pt/data/respAd.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/data/secaAd.rda |binary ExpDes.pt-1.2.0/ExpDes.pt/man/ExpDes.pt-package.Rd | 39 +--- ExpDes.pt-1.2.0/ExpDes.pt/man/anscombetukey.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/bartlett.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/ccboot.Rd | 18 - ExpDes.pt-1.2.0/ExpDes.pt/man/ccf.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/dbc.Rd | 28 +-- ExpDes.pt-1.2.0/ExpDes.pt/man/dic.Rd | 50 ++--- ExpDes.pt-1.2.0/ExpDes.pt/man/dql.Rd | 18 - ExpDes.pt-1.2.0/ExpDes.pt/man/duncan.Rd | 18 + ExpDes.pt-1.2.0/ExpDes.pt/man/est21Ad.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/ex.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/ex1.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/ex2.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/ex3.Rd | 9 ExpDes.pt-1.2.0/ExpDes.pt/man/ex4.Rd | 9 ExpDes.pt-1.2.0/ExpDes.pt/man/ex5.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/ex6.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/ex7.Rd | 9 ExpDes.pt-1.2.0/ExpDes.pt/man/ex8.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/ex9.Rd | 9 ExpDes.pt-1.2.0/ExpDes.pt/man/ex_nl.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/faixas.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/fat2.ad.dbc.Rd | 25 +- ExpDes.pt-1.2.0/ExpDes.pt/man/fat2.ad.dic.Rd | 23 +- ExpDes.pt-1.2.0/ExpDes.pt/man/fat2.dbc.Rd | 23 +- ExpDes.pt-1.2.0/ExpDes.pt/man/fat2.dic.Rd | 23 +- ExpDes.pt-1.2.0/ExpDes.pt/man/fat3.ad.dbc.Rd | 25 +- ExpDes.pt-1.2.0/ExpDes.pt/man/fat3.ad.dic.Rd | 23 +- ExpDes.pt-1.2.0/ExpDes.pt/man/fat3.dbc.Rd | 22 +- ExpDes.pt-1.2.0/ExpDes.pt/man/fat3.dic.Rd | 23 +- ExpDes.pt-1.2.0/ExpDes.pt/man/ginv.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/graficos.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/han.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/lastC.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/layard.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/levene.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/lsd.Rd | 17 + ExpDes.pt-1.2.0/ExpDes.pt/man/lsdb.Rd | 17 + ExpDes.pt-1.2.0/ExpDes.pt/man/oneilldbc.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/oneillmathews.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/order.group.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/order.stat.SNK.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/plotres.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/psub2.dbc.Rd | 25 +- ExpDes.pt-1.2.0/ExpDes.pt/man/psub2.dic.Rd | 24 +- ExpDes.pt-1.2.0/ExpDes.pt/man/reg.nl.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/reg.poly.Rd | 10 - ExpDes.pt-1.2.0/ExpDes.pt/man/respAd.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/samiuddin.Rd |only ExpDes.pt-1.2.0/ExpDes.pt/man/scottknott.Rd | 16 + ExpDes.pt-1.2.0/ExpDes.pt/man/secaAd.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/snk.Rd | 16 + ExpDes.pt-1.2.0/ExpDes.pt/man/tapply.stat.Rd | 8 ExpDes.pt-1.2.0/ExpDes.pt/man/tukey.Rd | 41 +--- 139 files changed, 422 insertions(+), 477 deletions(-)
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Michael Friendly, Roeland Kindt,
Pierre Legendre, Dan McGlinn, Peter R. Minchin, R. B. O'Hara,
Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs,
Helene Wagner
Maintainer: Jari Oksanen <jari.oksanen@oulu.fi>
Diff between vegan versions 2.5-1 dated 2018-04-14 and 2.5-2 dated 2018-05-17
DESCRIPTION | 10 +++--- MD5 | 50 +++++++++++++++--------------- NAMESPACE | 5 +++ R/influence.cca.R | 5 +++ R/ordiplot.R | 4 +- R/permutest.cca.R | 2 - R/plot.betadisper.R | 6 +-- R/plot.cca.R | 13 ++++++++ R/predict.rda.R | 4 ++ R/print.cca.R | 14 ++++++++ R/rda.default.R | 3 + build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 63 +++++++++++++++++++++++++++++++++++++++ inst/doc/FAQ-vegan.Rmd | 25 +++++++++++++++ inst/doc/FAQ-vegan.html | 27 ++++++++++++++++ inst/doc/decision-vegan.pdf |binary inst/doc/diversity-vegan.pdf |binary inst/doc/intro-vegan.pdf |binary inst/doc/partitioning.pdf |binary man/commsim.Rd | 18 +++++++++++ man/goodness.cca.Rd | 17 +++++++--- man/ordihull.Rd | 15 ++++----- man/vegan-internal.Rd | 1 tests/cca-object-tests.Rout.save | 11 +++--- vignettes/FAQ-vegan.Rmd | 25 +++++++++++++++ 26 files changed, 265 insertions(+), 53 deletions(-)
More information about sparseIndexTracking at CRAN
Permanent link
Title: Functions for the Logitnormal Distribution
Description: Density, distribution, quantile and random generation function for the logitnormal distribution. Estimation of the mode and the first two moments. Estimation of distribution parameters.
Author: Thomas Wutzler
Maintainer: Thomas Wutzler <twutz@bgc-jena.mpg.de>
Diff between logitnorm versions 0.8.35 dated 2017-12-08 and 0.8.36 dated 2018-05-17
DESCRIPTION | 7 MD5 | 42 - NEWS.md | 3 R/logitnorm.R | 908 ++++++++++++++++++++-------------------- build/vignette.rds |binary inst/unitTests/runitLogitnorm.R | 305 ++++++------- man/dlogitnorm.Rd | 59 +- man/invlogit.Rd | 44 - man/logit.Rd | 44 - man/logitnorm-package.Rd | 112 ++-- man/modeLogitnorm.Rd | 38 - man/momentsLogitnorm.Rd | 53 +- man/plogitnorm.Rd | 46 +- man/qlogitnorm.Rd | 46 +- man/rlogitnorm.Rd | 40 - man/twCoefLogitnorm.Rd | 80 +-- man/twCoefLogitnormCi.Rd | 62 +- man/twCoefLogitnormE.Rd | 84 +-- man/twCoefLogitnormMLE.Rd | 72 +-- man/twCoefLogitnormMLEFlat.Rd | 40 - man/twCoefLogitnormN.Rd | 78 +-- man/twSigmaLogitnorm.Rd | 60 +- 22 files changed, 1116 insertions(+), 1107 deletions(-)
Title: Identifying Cryptic Relatedness in Genetic Association Studies
Description: Exploratory tools to identify closely related subjects using autosomal genetic marker data.
Author: Annick Joelle Nembot-Simo, Jinko Graham and Brad McNeney
Maintainer: Brad McNeney <mcneney@sfu.ca>
Diff between CrypticIBDcheck versions 0.3-1 dated 2013-09-21 and 0.3-3 dated 2018-05-17
DESCRIPTION | 14 MD5 | 36 + NAMESPACE | 10 R/SNPgenmap.R | 4 R/countIBS.R | 4 R/estIBD.R | 8 R/filters.R | 104 ++--- R/simIBD.R | 780 ++++++++++++++++++++---------------------- build/vignette.rds |binary data/datalist |only inst/doc/CrypticIBDcheck.Rnw | 6 inst/doc/CrypticIBDcheck.pdf |binary inst/doc/IBDcheck-hapmap.pdf |binary man/IBDcheck.Rd | 16 man/RutgersMapB36.Rd | 6 man/SNPgenmap.Rd | 1 man/sim.control.Rd | 4 src/countIBS.c | 2 src/init.c |only vignettes/CrypticIBDcheck.Rnw | 6 20 files changed, 509 insertions(+), 492 deletions(-)
More information about CrypticIBDcheck at CRAN
Permanent link
Title: Beyond the Border
Description: Kernel density estimation dedicated to urban geography.
Author: Thierry Cornely, Laure Genebes, Arlindo Dos Santos, Cynthia Faivre,
Auriane Renaud, Farida Marouchi and Francois Semecurbe
Maintainer: Arlindo Dos Santos <Arlindo.Dos-Santos@insee.fr>
Diff between btb versions 0.1.14 dated 2017-04-03 and 0.1.25 dated 2018-05-17
btb-0.1.14/btb/R/Grid.R |only btb-0.1.14/btb/data/reunion.rdata |only btb-0.1.14/btb/inst/testsUnitaires/test_calculeQuantiles.R |only btb-0.1.14/btb/man/Grid-class.Rd |only btb-0.1.14/btb/man/smoothingToGrid.Rd |only btb-0.1.14/btb/src/rcppLissageMedian.cpp |only btb-0.1.25/btb/DESCRIPTION | 15 btb-0.1.25/btb/MD5 | 57 ++- btb-0.1.25/btb/NAMESPACE | 8 btb-0.1.25/btb/R/RcppExports.R | 26 + btb-0.1.25/btb/R/kernelSmoothing.R |only btb-0.1.25/btb/data/datalist |only btb-0.1.25/btb/data/dfPrix_SP95_2016.RData |only btb-0.1.25/btb/data/dfRestaurantParis.RData |only btb-0.1.25/btb/data/pixel_france_1km_2154.rdata |only btb-0.1.25/btb/data/reunion.RData |only btb-0.1.25/btb/inst/NEWS | 14 btb-0.1.25/btb/inst/testsUnitaires/algorithmes.ods |only btb-0.1.25/btb/inst/testsUnitaires/documentationLissageMedian.R |only btb-0.1.25/btb/inst/testsUnitaires/kernel_smoothing_2_obs.ods |binary btb-0.1.25/btb/inst/testsUnitaires/lissageMedian.ods |only btb-0.1.25/btb/inst/testsUnitaires/makeCluster.ods |only btb-0.1.25/btb/inst/testsUnitaires/test_grappe.R |only btb-0.1.25/btb/inst/testsUnitaires/test_kernelSmoothing.R | 66 ++-- btb-0.1.25/btb/inst/testsUnitaires/test_lissageMedian.R |only btb-0.1.25/btb/man/constituerGrappes.Rd |only btb-0.1.25/btb/man/constituerMatriceEffectifs.Rd |only btb-0.1.25/btb/man/dfPrix_SP95_2016.Rd |only btb-0.1.25/btb/man/dfRestaurantParis.Rd |only btb-0.1.25/btb/man/dfToGrid.Rd |only btb-0.1.25/btb/man/kernelSmoothing.Rd | 138 +++++--- btb-0.1.25/btb/man/pixel_france.Rd |only btb-0.1.25/btb/src/Makevars |only btb-0.1.25/btb/src/Makevars.win |only btb-0.1.25/btb/src/RcppExports.cpp | 123 +++++-- btb-0.1.25/btb/src/constituerGrappes.cpp |only btb-0.1.25/btb/src/constituerGrappes.h |only btb-0.1.25/btb/src/constituerMatriceEffectifs.cpp |only btb-0.1.25/btb/src/constituerMatriceEffectifs.h |only btb-0.1.25/btb/src/init.c | 18 - btb-0.1.25/btb/src/lissageMedian.cpp |only btb-0.1.25/btb/src/lissageMedian.h |only btb-0.1.25/btb/src/rcppLissage.cpp | 155 ++++++---- btb-0.1.25/btb/src/rcppLissage.h |only btb-0.1.25/btb/src/rcppLissageMedianGrappe.cpp |only btb-0.1.25/btb/src/rcppLissageMedianGrappe.h |only btb-0.1.25/btb/src/utils.cpp |only btb-0.1.25/btb/src/utils.h |only 48 files changed, 416 insertions(+), 204 deletions(-)
Title: Wavelet Analysis of Genomic Data from Admixed Populations
Description: Implements wavelet-based approaches for describing population admixture. Principal Components Analysis (PCA) is used to define the population structure and produce a localized admixture signal for each individual. Wavelet summaries of the PCA output describe variation present in the data and can be related to population-level demographic processes. For more details, see J Sanderson, H Sudoyo, TM Karafet, MF Hammer and MP Cox. 2015. Reconstructing past admixture processes from local genomic ancestry using wavelet transformation. Genetics 200:469-481 <doi:10.1534/genetics.115.176842>.
Author: Jean Sanderson
Maintainer: Murray Cox <murray.p.cox@gmail.com>
Diff between adwave versions 1.2 dated 2017-09-14 and 1.3 dated 2018-05-17
adwave-1.2/adwave/man/adwave-package.Rd |only adwave-1.3/adwave/DESCRIPTION | 11 - adwave-1.3/adwave/MD5 | 11 - adwave-1.3/adwave/man/admix.Rd | 69 ++++---- adwave-1.3/adwave/man/plotsignal.Rd | 127 ++++++++-------- adwave-1.3/adwave/man/signal.Rd | 250 +++++++++++++++----------------- adwave-1.3/adwave/man/wavesum.Rd | 189 ++++++++++++------------ 7 files changed, 325 insertions(+), 332 deletions(-)
Title: Functions to Compute Compositional Turnover Using Zeta Diversity
Description: Functions to compute compositional turnover using zeta-diversity,
the number of species shared by multiple assemblages. The package includes
functions to compute zeta-diversity for a specific number of
assemblages and to compute zeta-diversity for a range of numbers of
assemblages. It also includes functions to explain how zeta-diversity
varies with distance and with differences in environmental variables
between assemblages, using generalised linear models, linear models
with negative constraints, generalised additive models,shape
constrained additive models, and I-splines.
Author: Guillaume Latombe, Melodie A. McGeoch, David A. Nipperess, Cang Hui
Maintainer: Guillaume Latombe <latombe.guillaume@gmail.com>
Diff between zetadiv versions 1.1.0 dated 2018-04-11 and 1.1.1 dated 2018-05-17
DESCRIPTION | 8 +-- MD5 | 12 ++--- NAMESPACE | 2 R/zetadiv.R | 99 +++++++++++++++++++++++--------------------- man/Zeta.decline.mc.Rd | 14 +++--- man/Zeta.order.mc.Rd | 12 ++--- man/Zeta.sam.sensitivity.Rd | 10 ++-- 7 files changed, 81 insertions(+), 76 deletions(-)
Title: Robust Time Series Filters
Description: A set of functions to filter time series based on concepts
from robust statistics.
Author: Roland Fried <fried@statistik.tu-dortmund.de>, Karen
Schettlinger <schettlinger@statistik.tu-dortmund.de> and
Matthias Borowski <borowski@statistik.tu-dortmund.de>
Maintainer: Roland Fried <fried@statistik.tu-dortmund.de>
Diff between robfilter versions 4.1 dated 2014-12-05 and 4.1.1 dated 2018-05-17
DESCRIPTION | 10 ++++++---- MD5 | 12 +++++++----- NAMESPACE | 5 ++++- R/hybrid.filter.R | 2 +- R/robregfilter.R | 2 +- build |only man/robfilter-package.Rd | 38 ++++++++++---------------------------- src/robfilter_init.c |only 8 files changed, 29 insertions(+), 40 deletions(-)
Title: Number-Theoretic Functions
Description: Provides number-theoretic functions for factorization, prime
numbers, twin primes, primitive roots, modular logarithm and
inverses, extended GCD, Farey series and continuous fractions.
Includes Legendre and Jacobi symbols, some divisor functions,
Euler's Phi function, etc.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between numbers versions 0.6-6 dated 2017-01-10 and 0.7-1 dated 2018-05-17
DESCRIPTION | 23 ++++++++++++----------- MD5 | 20 +++++++++++++------- NAMESPACE | 7 +++---- NEWS | 21 +++++++++++++++++---- R/inthroot.R |only R/is.R | 12 ++++++++++++ R/modlog.R |only R/primroot.R | 36 ++++++++++++++++-------------------- build |only man/inthroot.Rd |only man/isPrimroot.Rd |only man/modlog.Rd |only man/numbers-package.Rd | 43 +++++++++++++++++++++++++++++++------------ man/primroot.Rd | 7 ++++--- 14 files changed, 108 insertions(+), 61 deletions(-)
Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian,
for specifying a banded numerical Jacobian and for allowing
a singular or ill-conditioned Jacobian.
Author: Berend Hasselman
Maintainer: Berend Hasselman <bhh@xs4all.nl>
Diff between nleqslv versions 3.3.1 dated 2017-07-08 and 3.3.2 dated 2018-05-17
DESCRIPTION | 9 ++++----- MD5 | 7 ++++--- NEWS | 4 ++++ build |only man/nleqslv-package.Rd | 9 +++------ 5 files changed, 15 insertions(+), 14 deletions(-)
Title: Calculate Generalized Eigenvalues, the Generalized Schur
Decomposition and the Generalized Singular Value Decomposition
of a Matrix Pair with Lapack
Description: Functions to compute generalized eigenvalues and eigenvectors,
the generalized Schur decomposition and
the generalized Singular Value Decomposition of a matrix pair,
using Lapack routines.
Author: Berend Hasselman [cre, aut],
Lapack authors [aut, cph]
Maintainer: Berend Hasselman <bhh@xs4all.nl>
Diff between geigen versions 2.1 dated 2017-08-22 and 2.2 dated 2018-05-17
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NEWS | 6 ++++++ build |only man/geigen-package.Rd | 33 +++++---------------------------- man/geigen.Rd | 2 +- man/gqz.Rd | 2 +- man/gsvd.Rd | 2 +- src/zggesall.f | 36 ++++++++++++++++++------------------ 9 files changed, 44 insertions(+), 60 deletions(-)
More information about colocalization at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-17 0.3.2
2018-03-01 0.3.1
Title: Fixed Effects Selection in Linear Mixed Models
Description: Perform Fixed effects Selection in Linear Mixed Models using a multicycle ECM algorithm; see F. Rohart & al, 2014, <doi:10.1016/j.csda.2014.06.022>.
Author: F.Rohart
Maintainer: Florian Rohart <florian.rohart@gmail.com>
Diff between MMS versions 3.00 dated 2014-04-07 and 3.0.11 dated 2018-05-17
DESCRIPTION | 12 ++++++------ MD5 | 25 +++++++++++++------------ NAMESPACE | 3 +++ R/MM2function.R | 24 ++++++++++++------------ R/lassop_diag.R | 31 +++++++++++++++---------------- R/lassop_nodiag.R | 29 ++++++++++++++--------------- R/lmme_diag.R | 16 ++++++++-------- R/lmme_nodiag.R | 14 +++++++------- R/mhtp_diag.R | 36 ++++++++++++++++++------------------ R/mhtp_nodiag.R | 34 +++++++++++++++++----------------- R/refit.mhtp_diag.R | 18 +++++++++--------- R/refit.mhtp_nodiag.R | 16 ++++++++-------- build |only man/MMS-package.Rd | 40 ++++++++++++++++++---------------------- 14 files changed, 148 insertions(+), 150 deletions(-)
Title: Out of Memory Vectors
Description: Core functionality for working with vectors (numeric, integer,
logical and character) that are too large to keep in memory. The vectors are
kept (partially) on disk using memory mapping. This package contains the
basic functionality for working with these memory mapped vectors (e.g.
creating, indexing, ordering and sorting) and provides C++ headers which can
be used by other packages to extend the functionality provided in this
package.
Author: Jan van der Laan
Maintainer: Jan van der Laan <djvanderlaan@unrealizedtime.nl>
Diff between lvec versions 0.1.1 dated 2017-07-30 and 0.2.1 dated 2018-05-17
lvec-0.1.1/lvec/inst/include/vec_to_sexp.h |only lvec-0.1.1/lvec/src/Makevars |only lvec-0.1.1/lvec/src/boolean.h |only lvec-0.1.1/lvec/src/cppr.h |only lvec-0.1.1/lvec/src/iterator.h |only lvec-0.1.1/lvec/src/ldat.h |only lvec-0.1.1/lvec/src/lvec.h |only lvec-0.1.1/lvec/src/memmap.h |only lvec-0.1.1/lvec/src/val_ref.h |only lvec-0.1.1/lvec/src/vec.h |only lvec-0.1.1/lvec/src/visitor.h |only lvec-0.2.1/lvec/DESCRIPTION | 12 - lvec-0.2.1/lvec/MD5 | 71 +++---- lvec-0.2.1/lvec/NAMESPACE | 1 lvec-0.2.1/lvec/NEWS | 14 + lvec-0.2.1/lvec/R/load_save.R | 3 lvec-0.2.1/lvec/R/lvec.R | 1 lvec-0.2.1/lvec/R/print.R | 2 lvec-0.2.1/lvec/inst/include/boolean.h | 18 - lvec-0.2.1/lvec/inst/include/cppr.h | 240 +------------------------- lvec-0.2.1/lvec/inst/include/lvec.h | 16 - lvec-0.2.1/lvec/inst/include/lvec_interface.h | 1 lvec-0.2.1/lvec/inst/include/memmap.h | 6 lvec-0.2.1/lvec/inst/include/val_ref.h | 2 lvec-0.2.1/lvec/inst/include/visitor.h | 5 lvec-0.2.1/lvec/man/lsave.Rd | 3 lvec-0.2.1/lvec/src/as_lvec.cpp | 99 +++++----- lvec-0.2.1/lvec/src/as_rvec.cpp | 49 ++--- lvec-0.2.1/lvec/src/assign.cpp | 48 ++--- lvec-0.2.1/lvec/src/assign_range.cpp | 54 ++--- lvec-0.2.1/lvec/src/clone.cpp | 16 - lvec-0.2.1/lvec/src/construct.cpp | 77 ++------ lvec-0.2.1/lvec/src/get_type.cpp | 27 +- lvec-0.2.1/lvec/src/indexing.cpp | 37 +--- lvec-0.2.1/lvec/src/indexing_range.cpp | 53 ++--- lvec-0.2.1/lvec/src/lvec-init.cpp | 5 lvec-0.2.1/lvec/src/order.cpp | 28 +-- lvec-0.2.1/lvec/src/r_export.h | 4 lvec-0.2.1/lvec/src/size.cpp | 39 +--- lvec-0.2.1/lvec/src/sort.cpp | 27 +- lvec-0.2.1/lvec/src/strlen.cpp | 33 +-- lvec-0.2.1/lvec/src/tempfile.cpp | 21 -- 42 files changed, 366 insertions(+), 646 deletions(-)
Title: Bayesian Variable Selection in High Dimensional Settings using
Nonlocal Priors
Description: Variable/Feature selection in high or ultra-high dimensional
settings has gained a lot of attention recently specially in cancer genomic
studies. This package provides a Bayesian approach to tackle this problem,
where it exploits mixture of point masses at zero and nonlocal priors to
improve the performance of variable selection and coefficient estimation.
product moment (pMOM) and product inverse moment (piMOM) nonlocal priors
are implemented and can be used for the analyses. This package performs
variable selection for binary response and survival time response datasets
which are widely used in biostatistic and bioinformatics community.
Benefiting from parallel computing ability, it reports necessary outcomes
of Bayesian variable selection such as Highest Posterior Probability Model
(HPPM), Median Probability Model (MPM) and posterior inclusion probability
for each of the covariates in the model. The option to use Bayesian Model
Averaging (BMA) is also part of this package that can be exploited for
predictive power measurements in real datasets.
Author: Amir Nikooienejad [aut, cre], Valen E. Johnson [ths]
Maintainer: Amir Nikooienejad <amir@stat.tamu.edu>
Diff between BVSNLP versions 1.1.0 dated 2018-03-26 and 1.1.5 dated 2018-05-17
DESCRIPTION | 11 +- MD5 | 10 +- R/bvs.R | 200 ++++++++++++++++++++++++++++++++++++------------------ R/zzz.R | 8 +- man/bvs.Rd | 20 +++-- src/Functions.cpp | 64 +++++++++-------- 6 files changed, 199 insertions(+), 114 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-13 0.3.5
2013-12-02 0.3.3
2013-10-13 0.3
2013-06-30 0.2
2013-01-31 0.1
Title: CRAN Task Views
Description: Infrastructure for task views to CRAN-style repositories: Querying task views and installing the associated
packages (client-side tools), generating HTML pages and storing task view information in the repository
(server-side tools).
Author: Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between ctv versions 0.8-4 dated 2018-01-18 and 0.8-5 dated 2018-05-17
DESCRIPTION | 17 MD5 | 71 NEWS | 6 R/ctv-server.R | 31 build/vignette.rds |binary inst/ctv/Bayesian.ctv | 49 inst/ctv/ChemPhys.ctv | 4 inst/ctv/ClinicalTrials.ctv | 8 inst/ctv/Cluster.ctv | 53 inst/ctv/Distributions.ctv | 34 inst/ctv/Econometrics.ctv | 15 inst/ctv/Environmetrics.ctv | 5 inst/ctv/ExperimentalDesign.ctv | 12 inst/ctv/ExtremeValue.ctv | 9 inst/ctv/Finance.ctv | 35 inst/ctv/FunctionalData.ctv | 8 inst/ctv/HighPerformanceComputing.ctv | 52 inst/ctv/MachineLearning.ctv | 20 inst/ctv/MedicalImaging.ctv | 11 inst/ctv/MetaAnalysis.ctv | 100 - inst/ctv/ModelDeployment.ctv |only inst/ctv/Multivariate.ctv | 5 inst/ctv/NaturalLanguageProcessing.ctv | 4 inst/ctv/NumericalMathematics.ctv | 85 inst/ctv/OfficialStatistics.ctv | 20 inst/ctv/Optimization.ctv | 451 ++-- inst/ctv/Pharmacokinetics.ctv | 4 inst/ctv/Phylogenetics.ctv | 8 inst/ctv/Psychometrics.ctv | 23 inst/ctv/ReproducibleResearch.ctv | 29 inst/ctv/SocialSciences.ctv | 83 inst/ctv/Spatial.ctv | 19 inst/ctv/SpatioTemporal.ctv | 5 inst/ctv/Survival.ctv | 2994 +++++++++++++++++---------------- inst/ctv/TimeSeries.ctv | 56 inst/ctv/WebTechnologies.ctv | 10 inst/doc/ctv-howto.pdf | 46 37 files changed, 2365 insertions(+), 2017 deletions(-)
Title: Sequential Full Factorial-Based Latin Hypercube Design
Description: Gives design points from a sequential full factorial-based
Latin hypercube design, as described in Duan, Ankenman, Sanchez,
and Sanchez (2015, Technometrics,
<doi:10.1080/00401706.2015.1108233>).
Author: Collin Erickson
Maintainer: Collin Erickson <collinberickson@gmail.com>
Diff between sFFLHD versions 0.1.1 dated 2016-09-21 and 0.1.2 dated 2018-05-17
DESCRIPTION | 13 +++-- MD5 | 25 ++++++--- NAMESPACE | 2 NEWS.md | 12 ++++ R/sFFLHD.R | 134 ++++++++++++++++++++++++++++++++++------------------ R/sFFLHD_Lflex.R |only R/sFFLHDmm.R |only R/split_matrix.R |only README.md | 42 +++++++++++++--- man/sFFLHD-class.Rd | 9 ++- man/sFFLHD_Lflex.Rd |only man/sFFLHDmm.Rd |only man/split_matrix.Rd | 5 - tests |only tools |only 15 files changed, 170 insertions(+), 72 deletions(-)
Title: SAGA Geoprocessing and Terrain Analysis
Description: Provides access to geocomputing and terrain analysis functions
of the geographical information system (GIS) 'SAGA' (System for Automated
Geoscientific Analyses) from within R by running the command line version of
SAGA. This package furthermore provides several R functions for handling ASCII
grids, including a flexible framework for applying local functions (including
predict methods of fitted models) and focal functions to multiple grids. SAGA
GIS is available under GPLv2 / LGPLv2 licence from
<http://sourceforge.net/projects/saga-gis/>.
Author: Alexander Brenning [aut, cre] (<https://orcid.org/0000-0001-6640-679X>),
Donovan Bangs [aut],
Marc Becker [aut],
Patrick Schratz [ctb] (<https://orcid.org/0000-0003-0748-6624>),
Fabian Polakowski [ctb]
Maintainer: Alexander Brenning <alexander.brenning@uni-jena.de>
Diff between RSAGA versions 1.0.0 dated 2018-02-21 and 1.1.0 dated 2018-05-17
RSAGA-1.0.0/RSAGA/inst/CITATION |only RSAGA-1.0.0/RSAGA/vignettes/Thumbs.db |only RSAGA-1.1.0/RSAGA/DESCRIPTION | 32 RSAGA-1.1.0/RSAGA/LICENSE | 678 - RSAGA-1.1.0/RSAGA/MD5 | 139 RSAGA-1.1.0/RSAGA/NAMESPACE | 186 RSAGA-1.1.0/RSAGA/R/RSAGA-core.R | 2443 +++--- RSAGA-1.1.0/RSAGA/R/RSAGA-modules.R | 5982 +++++++-------- RSAGA-1.1.0/RSAGA/R/RSAGA-package.R | 116 RSAGA-1.1.0/RSAGA/R/RSAGA-utils.R | 130 RSAGA-1.1.0/RSAGA/R/gridtools.R | 4200 +++++----- RSAGA-1.1.0/RSAGA/R/landslides.R | 158 RSAGA-1.1.0/RSAGA/build/vignette.rds |binary RSAGA-1.1.0/RSAGA/inst/doc/RSAGA.R | 242 RSAGA-1.1.0/RSAGA/inst/doc/RSAGA.Rmd | 550 - RSAGA-1.1.0/RSAGA/inst/doc/RSAGA.html | 768 + RSAGA-1.1.0/RSAGA/man/RSAGA-package.Rd | 126 RSAGA-1.1.0/RSAGA/man/centervalue.Rd | 50 RSAGA-1.1.0/RSAGA/man/create.variable.name.Rd | 48 RSAGA-1.1.0/RSAGA/man/focal.function.Rd | 254 RSAGA-1.1.0/RSAGA/man/grid.predict.Rd | 158 RSAGA-1.1.0/RSAGA/man/grid.to.xyz.Rd | 68 RSAGA-1.1.0/RSAGA/man/landslides.Rd | 176 RSAGA-1.1.0/RSAGA/man/match.arg.ext.Rd | 126 RSAGA-1.1.0/RSAGA/man/multi.focal.function.Rd | 292 RSAGA-1.1.0/RSAGA/man/pick.from.points.Rd | 340 RSAGA-1.1.0/RSAGA/man/read.ascii.grid.Rd | 208 RSAGA-1.1.0/RSAGA/man/relative.position.Rd | 90 RSAGA-1.1.0/RSAGA/man/resid.median.Rd | 84 RSAGA-1.1.0/RSAGA/man/rsaga.add.grid.values.to.points.Rd | 76 RSAGA-1.1.0/RSAGA/man/rsaga.close.gaps.Rd | 110 RSAGA-1.1.0/RSAGA/man/rsaga.contour.Rd | 80 RSAGA-1.1.0/RSAGA/man/rsaga.copy.sgrd.Rd | 50 RSAGA-1.1.0/RSAGA/man/rsaga.env.Rd | 186 RSAGA-1.1.0/RSAGA/man/rsaga.esri.to.sgrd.Rd | 76 RSAGA-1.1.0/RSAGA/man/rsaga.esri.wrapper.Rd | 136 RSAGA-1.1.0/RSAGA/man/rsaga.fill.sinks.Rd | 118 RSAGA-1.1.0/RSAGA/man/rsaga.filter.gauss.Rd | 72 RSAGA-1.1.0/RSAGA/man/rsaga.filter.simple.Rd | 82 RSAGA-1.1.0/RSAGA/man/rsaga.geoprocessor.Rd | 186 RSAGA-1.1.0/RSAGA/man/rsaga.get.modules.Rd | 182 RSAGA-1.1.0/RSAGA/man/rsaga.get.modules.path.Rd | 40 RSAGA-1.1.0/RSAGA/man/rsaga.get.usage.Rd | 90 RSAGA-1.1.0/RSAGA/man/rsaga.get.version.Rd | 80 RSAGA-1.1.0/RSAGA/man/rsaga.grid.calculus.Rd | 172 RSAGA-1.1.0/RSAGA/man/rsaga.grid.to.points.Rd | 110 RSAGA-1.1.0/RSAGA/man/rsaga.hillshade.Rd | 98 RSAGA-1.1.0/RSAGA/man/rsaga.html.help.Rd | 78 RSAGA-1.1.0/RSAGA/man/rsaga.import.gdal.Rd | 516 - RSAGA-1.1.0/RSAGA/man/rsaga.insolation.Rd | 166 RSAGA-1.1.0/RSAGA/man/rsaga.intersect.polygons.Rd | 166 RSAGA-1.1.0/RSAGA/man/rsaga.inverse.distance.Rd | 138 RSAGA-1.1.0/RSAGA/man/rsaga.lib.prefix.Rd | 70 RSAGA-1.1.0/RSAGA/man/rsaga.local.morphometry.Rd | 164 RSAGA-1.1.0/RSAGA/man/rsaga.parallel.processing.Rd | 212 RSAGA-1.1.0/RSAGA/man/rsaga.pisr.Rd | 242 RSAGA-1.1.0/RSAGA/man/rsaga.pisr2.Rd | 216 RSAGA-1.1.0/RSAGA/man/rsaga.set.env.Rd | 54 RSAGA-1.1.0/RSAGA/man/rsaga.sgrd.to.esri.Rd | 124 RSAGA-1.1.0/RSAGA/man/rsaga.sink.removal.Rd | 84 RSAGA-1.1.0/RSAGA/man/rsaga.sink.route.Rd | 80 RSAGA-1.1.0/RSAGA/man/rsaga.slope.asp.curv.Rd | 274 RSAGA-1.1.0/RSAGA/man/rsaga.solar.radiation.Rd | 160 RSAGA-1.1.0/RSAGA/man/rsaga.target.Rd | 120 RSAGA-1.1.0/RSAGA/man/rsaga.topdown.processing.Rd | 236 RSAGA-1.1.0/RSAGA/man/rsaga.union.polygons.Rd | 164 RSAGA-1.1.0/RSAGA/man/rsaga.wetness.index.Rd | 138 RSAGA-1.1.0/RSAGA/man/set.file.extension.Rd | 74 RSAGA-1.1.0/RSAGA/man/wind.shelter.Rd | 140 RSAGA-1.1.0/RSAGA/tests |only RSAGA-1.1.0/RSAGA/vignettes/RSAGA.Rmd | 550 - 71 files changed, 11990 insertions(+), 11764 deletions(-)
Title: Psychometric Modeling Infrastructure
Description: Infrastructure for psychometric modeling such as data classes
(for item response data and paired comparisons), basic model fitting
functions (for Bradley-Terry, Rasch, partial credit, rating scale,
multinomial processing tree models), extractor functions for different types
of parameters (item, person, threshold, discrimination), unified inference
and visualizations, and various datasets for illustration. Intended as a
common lightweight and efficient toolbox for psychometric modeling and a
common building block for fitting psychometric mixture models in package
"psychomix" and trees based on psychometric models in package "psychotree".
Author: Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Carolin Strobl [aut],
Florian Wickelmaier [aut],
Basil Komboz [aut],
Julia Kopf [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between psychotools versions 0.4-2 dated 2016-09-09 and 0.4-3 dated 2018-05-17
DESCRIPTION | 17 - MD5 | 58 ++--- NAMESPACE | 1 NEWS | 21 + R/btmodel.R | 18 - R/elementary_symmetric_functions.R | 8 R/mptmodel.R | 31 ++ R/pcmodel.R | 4 R/raschmodel.R | 4 R/rsmodel.R | 4 R/zzz.R |only build/partial.rdb |binary data/FirstNames.rda |binary data/GermanParties2009.rda |binary data/MathExam14W.rda |binary data/MemoryDeficits.rda |binary data/PairClustering.rda |binary data/SoundQuality.rda |binary data/SourceMonitoring.rda |binary data/StereotypeThreat.rda |binary data/VerbalAggression.rda |binary data/YouthGratitude.rda |binary man/MathExam14W.Rd | 21 + man/SoundQuality.Rd | 4 man/anchor.Rd | 3 man/anchortest.Rd | 5 man/mptmodel.Rd | 7 man/pcmodel.Rd | 2 man/plot.btmodel.Rd | 4 src/init.c |only tests/Examples/psychotools-Ex.Rout.save | 369 ++++++++++---------------------- 31 files changed, 276 insertions(+), 305 deletions(-)
Title: Polynomials in R
Description: Implements univariate polynomial operations in R, including
polynomial arithmetic, finding zeros, plotting, and some operations on
lists of polynomials.
Author: Bill Venables, with contribution by Kurt Hornik and Georgi Boshnakov
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Diff between PolynomF versions 1.0-1 dated 2017-11-27 and 1.0-2 dated 2018-05-17
DESCRIPTION | 8 +- MD5 | 5 - build |only man/PolynomF-package.Rd | 151 ++++++++++++++++++++++-------------------------- 4 files changed, 79 insertions(+), 85 deletions(-)
Title: Access to Twitter Streaming API via R
Description: Functions to access Twitter's filter, sample, and user streams, and to
parse the output into data frames.
Author: Pablo Barbera <pablo.barbera@nyu.edu>
Maintainer: Pablo Barbera <pablo.barbera@nyu.edu>
Diff between streamR versions 0.2.1 dated 2014-01-06 and 0.4.2 dated 2018-05-17
ChangeLog | 12 ++ DESCRIPTION | 12 +- MD5 | 33 +++---- NAMESPACE | 4 R/filterStream.R | 81 +++++++++++++----- R/parseTweets.R | 135 ++++++++++++++++++++++++++++-- R/readTweets.R | 21 +++- R/sampleStream.R | 38 +++++--- R/streamR-package.R | 2 R/userStream.R | 50 ++++++----- man/createOAuthToken.Rd |only man/example_tweets.Rd | 12 +- man/filterStream.Rd | 212 +++++++++++++++++++++--------------------------- man/parseTweets.Rd | 80 +++++++++--------- man/readTweets.Rd | 55 +++++------- man/sampleStream.Rd | 106 +++++++++++------------- man/streamR-package.Rd | 22 ++-- man/userStream.Rd | 175 ++++++++++++++++++--------------------- 18 files changed, 603 insertions(+), 447 deletions(-)
Title: Rich Text Format (RTF) Output
Description: A set of R functions to output Rich Text Format (RTF) files with high resolution tables and graphics that may be edited with a standard word processor such as Microsoft Word.
Author: Michael E. Schaffer [aut, cre, cph]
Maintainer: Michael E. Schaffer <mschaff@gmail.com>
Diff between rtf versions 0.4-11 dated 2013-11-12 and 0.4-13 dated 2018-05-17
rtf-0.4-11/rtf/vignettes/rtf-019.pdf |only rtf-0.4-11/rtf/vignettes/rtf-021.pdf |only rtf-0.4-13/rtf/DESCRIPTION | 8 ++-- rtf-0.4-13/rtf/MD5 | 22 +++++------- rtf-0.4-13/rtf/NAMESPACE | 22 ++++++++++++ rtf-0.4-13/rtf/NEWS | 8 ++++ rtf-0.4-13/rtf/R/rtf.R | 57 ++++++++++++++++++++++++++++++-- rtf-0.4-13/rtf/build/vignette.rds |binary rtf-0.4-13/rtf/inst/doc/rtf.R | 62 +++++++++++++++++------------------ rtf-0.4-13/rtf/inst/doc/rtf.Rnw | 1 rtf-0.4-13/rtf/inst/doc/rtf.pdf |binary rtf-0.4-13/rtf/man/RTF.Rd | 2 - rtf-0.4-13/rtf/vignettes/rtf.Rnw | 1 13 files changed, 132 insertions(+), 51 deletions(-)
Title: Optimal Subset Matching with Refined Covariate Balance
Description: Tools for optimal subset matching of treated units
and control units in observational studies, with support
for refined covariate balance constraints, (including
fine and near-fine balance as special cases). A close
relative is the 'rcbalance' package.
Author: Samuel D. Pimentel
Maintainer: Samuel D. Pimentel <spi@berkeley.edu>
Diff between rcbsubset versions 1.1.3 dated 2017-11-12 and 1.1.4 dated 2018-05-17
DESCRIPTION | 8 - MD5 | 14 +-- R/rcbsubset-internal.R | 153 ++++++++++++++++++++-------------- R/rcbsubset.R | 14 ++- build |only man/dist2net.Rd | 4 man/rcbsubset-package.Rd | 29 +++--- man/rcbsubset.Rd | 2 tests/testthat/test-default_penalty.R |only 9 files changed, 129 insertions(+), 95 deletions(-)
Title: Class Unions, Matrix Operations, and Color Schemes for OOMPA
Description: Provides the class unions that must be
preloaded in order for the basic tools in the OOMPA (Object-Oriented
Microarray and Proteomics Analysis) project to be defined and loaded.
It also includes vectorized operations for row-by-row means,
variances, and t-tests. Finally, it provides new color schemes.
Details on the packages in the OOMPA project can be found at
<http://oompa.r-forge.r-project.org/>.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between oompaBase versions 3.2.5 dated 2017-11-20 and 3.2.6 dated 2018-05-17
DESCRIPTION | 13 - MD5 | 40 ++-- NAMESPACE | 74 ++++---- NEWS | 240 ++++++++++++++-------------- R/b00-classunions.R | 52 +++--- R/b02-colorSchemes.R | 178 ++++++++++----------- R/b02-colors.R | 125 +++++++------- R/b03-matrixOps.R | 148 ++++++++--------- build/vignette.rds |binary inst/doc/oompa.R | 322 +++++++++++++++++++------------------- inst/doc/oompa.pdf |binary man/b02-0-ColorCoding-class.Rd | 226 +++++++++++++------------- man/b02-1-ColorCodedPair-class.Rd | 158 +++++++++--------- man/numnull.Rd | 32 +-- man/z01-matrixT.Rd | 142 ++++++++-------- man/z02-2-semanticColors.Rd | 100 +++++------ man/z02-colorSchemes.Rd | 180 ++++++++++----------- tests/test02-colors.R | 8 tests/test02-colors.Rout.save | 38 +++- tests/testMatrixOps.R | 92 +++++----- tests/testMatrixOps.Rout.save | 158 +++++++++--------- 21 files changed, 1183 insertions(+), 1143 deletions(-)
Title: Noncompartmental Analysis for Pharmacokinetic Data
Description: Conduct a noncompartmental analysis as closely as possible to the most widely used commercial software for pharmacokinetic analysis, i.e. 'Phoenix(R) WinNonlin(R)' <https://www.certara.com/software/pkpd-modeling-and-simulation/phoenix-winnonlin/>.
Some features are
1) Use of CDISC SDTM terms
2) Automatic slope selection with the same criterion of WinNonlin(R)
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between NonCompart versions 0.4.1 dated 2018-04-16 and 0.4.2 dated 2018-05-17
NonCompart-0.4.1/NonCompart/inst/doc/Validation.pdf |only NonCompart-0.4.2/NonCompart/DESCRIPTION | 8 +- NonCompart-0.4.2/NonCompart/MD5 | 18 ++--- NonCompart-0.4.2/NonCompart/NAMESPACE | 2 NonCompart-0.4.2/NonCompart/R/BestSlope.R | 2 NonCompart-0.4.2/NonCompart/R/DetSlope.R | 43 +++++-------- NonCompart-0.4.2/NonCompart/R/sNCA.R | 13 ++- NonCompart-0.4.2/NonCompart/inst/NEWS.Rd | 5 + NonCompart-0.4.2/NonCompart/inst/doc/NonCompart-manual.pdf |binary NonCompart-0.4.2/NonCompart/inst/doc/validation_0.4.2.pdf |only NonCompart-0.4.2/NonCompart/man/sNCA.Rd | 2 11 files changed, 47 insertions(+), 46 deletions(-)
Title: Optimal Multilevel Matching using a Network Algorithm
Description: Performs multilevel matches for data with cluster-level treatments and individual-level outcomes using a network optimization algorithm. Functions for checking balance at the cluster and individual levels are also provided, as are methods for permutation-inference-based outcome analysis. Details in Pimentel et al. (2017+), forthcoming in the Annals of Applied Statistics.
Author: Luke Keele, Sam Pimentel, and Paul Rosenbaum
Maintainer: Sam Pimentel <spi@berkeley.edu>
Diff between matchMulti versions 1.1.6 dated 2017-11-15 and 1.1.7 dated 2018-05-17
DESCRIPTION | 10 +++++----- MD5 | 16 +++++++++------- R/balanceMulti.R | 6 +++++- R/matchMulti-internal.R | 2 ++ R/matchMulti.R | 9 +++++++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/multiMatch_vignette.pdf |binary tests |only 9 files changed, 28 insertions(+), 15 deletions(-)
Title: Functions and datasets to accompany the book "Le logiciel R:
Maitriser le langage, Effectuer des analyses statistiques"
(French)
Description: Functions and datasets for the
reader of the book "Le logiciel R: Maitriser le langage,
Effectuer des analyse statistiques". The documentation and help
pages are written in french.
Author: Lafaye de Micheaux Pierre, Drouilhet Remy, Liquet Benoit
Maintainer: Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>
Diff between LeLogicielR versions 1.2 dated 2012-04-21 and 1.2.1 dated 2018-05-17
DESCRIPTION | 18 ++++++++++-------- MD5 | 43 ++++++++++++++++++++++++------------------- NAMESPACE | 11 +++++++++++ R/camembert.R | 35 ++++++++++++++++++----------------- R/getaddr.R |only R/zzz.R | 7 +++---- inst/CITATION | 14 +++++++------- inst/HISTORY | 13 +++++++++++++ man/IMC.ENFANT.Rd | 2 +- man/INFARCTUS.Rd | 4 ++-- man/INTIMA.MEDIA.Rd | 4 ++-- man/LeLogicielR-package.Rd | 2 +- man/NUTRIAGE.Rd | 4 ++-- man/POIDS.NAISSANCE.Rd | 2 +- man/VectorAddr.Rd |only man/camembert.Rd | 12 +++++++++--- man/cor0.test.Rd | 4 ++-- man/cor2.test.2.sample.Rd | 2 +- man/diagcroix.Rd | 2 +- man/flashy.plot.Rd | 2 +- man/fleches.Rd | 4 ++-- man/tuyauxorgue.Rd | 2 +- man/writeaddr.Rd |only src/LeLogicielR_init.c |only src/getaddr.c |only 25 files changed, 112 insertions(+), 75 deletions(-)
Title: Bayesian Emulation of Computer Programs
Description: Allows one to estimate the output of a computer program,
as a function of the input parameters, without actually running it.
The computer program is assumed to be a Gaussian process, whose
parameters are estimated using Bayesian techniques that give a PDF of
expected program output. This PDF is conditional on a ``training set''
of runs, each consisting of a point in parameter space and the model
output at that point. The emphasis is on complex codes that take
weeks or months to run, and that have a large number of undetermined
input parameters; many climate prediction models fall into this
class. The emulator essentially determines Bayesian posterior
estimates of the PDF of the output of a model, conditioned on results
from previous runs and a user-specified prior linear model. A vignette is
provided and the help pages include examples.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between emulator versions 1.2-15 dated 2014-09-08 and 1.2-17 dated 2018-05-17
emulator-1.2-15/emulator/man/emulator-package.Rd |only emulator-1.2-17/emulator/DESCRIPTION | 19 ++++++++++--------- emulator-1.2-17/emulator/MD5 | 21 ++++++++++----------- emulator-1.2-17/emulator/NAMESPACE | 4 ++++ emulator-1.2-17/emulator/build/vignette.rds |binary emulator-1.2-17/emulator/data/expert.estimates.rda |binary emulator-1.2-17/emulator/data/results.table.rda |binary emulator-1.2-17/emulator/data/toy.rda |binary emulator-1.2-17/emulator/inst/doc/emulex.pdf |binary emulator-1.2-17/emulator/man/betahat.fun.Rd | 6 +++--- emulator-1.2-17/emulator/man/optimal.scales.Rd | 2 +- emulator-1.2-17/emulator/man/regressor.basis.Rd | 4 ++-- 12 files changed, 30 insertions(+), 26 deletions(-)
Title: Continued Fractions
Description: Various utilities for evaluating continued fractions.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between contfrac versions 1.1-11 dated 2017-07-09 and 1.1-12 dated 2018-05-17
contfrac-1.1-11/contfrac/man/contfrac-package.Rd |only contfrac-1.1-12/contfrac/DESCRIPTION | 7 ++++--- contfrac-1.1-12/contfrac/MD5 | 5 ++--- contfrac-1.1-12/contfrac/man/CF.Rd | 21 +++++++++++++++++---- 4 files changed, 23 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-03 1.2-1
2012-12-19 1.2
2012-05-18 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-10 1.0-11
2013-01-21 1.0-10
2012-10-02 1.0-9
2011-03-27 1.0-7
2010-04-03 1.0-5
2009-10-15 1.0-4
2009-01-20 1.0-3
2008-11-25 1.0-2
2008-11-13 1.0-1