Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-25 0.6.0-0
Title: Parametric Time Warping
Description: Parametric Time Warping aligns patterns, i.e. it aims to
put corresponding features at the same locations. The algorithm
searches for an optimal polynomial describing the warping. It
is possible to align one sample to a reference, several samples
to the same reference, or several samples to several
references. One can choose between calculating individual
warpings, or one global warping for a set of samples and one
reference. Two optimization criteria are implemented: RMS (Root
Mean Square error) and WCC (Weighted Cross Correlation). Both
warping of peak profiles and of peak lists are supported.
Author: Jan Gerretzen [ctb],
Paul Eilers [aut],
Hans Wouters [ctb],
Tom Bloemberg [aut],
Ron Wehrens [aut, cre]
Maintainer: Ron Wehrens <ron.wehrens@gmail.com>
Diff between ptw versions 1.9-12 dated 2017-03-06 and 1.9-13 dated 2018-05-25
DESCRIPTION | 23 ++++++++++++++++------- MD5 | 15 ++++++++------- R/predict.ptw.R | 40 ++++++++++++++++++---------------------- TODO | 1 - build/vignette.rds |binary inst/NEWS | 6 +++++- inst/doc/stickPTW.pdf |binary man/predict.ptw.Rd | 28 ++++++++++++++++++++++++---- tests |only 9 files changed, 71 insertions(+), 42 deletions(-)
Title: Development Utilities for R Packages
Description: Provides some low-level utilities to use for package
development. It currently provides managers for multiple package specific
options and registries, vignette, unit test and bibtex related utilities.
It serves as a base package for packages like NMF, RcppOctave, doRNG, and
as an incubator package for other general purposes utilities, that will
eventually be packaged separately.
It is still under heavy development and changes in the interface(s) are
more than likely to happen.
Author: Renaud Gaujoux [aut, cre]
Maintainer: Renaud Gaujoux <renozao@protonmail.com>
Diff between pkgmaker versions 0.22 dated 2018-05-10 and 0.27 dated 2018-05-25
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Title: Multivariate Imputation by Chained Equations
Description: Multiple imputation using Fully Conditional Specification (FCS)
implemented by the MICE algorithm as described in Van Buuren and
Groothuis-Oudshoorn (2011) <doi:10.18637/jss.v045.i03>. Each variable has
its own imputation model. Built-in imputation models are provided for
continuous data (predictive mean matching, normal), binary data (logistic
regression), unordered categorical data (polytomous logistic regression)
and ordered categorical data (proportional odds). MICE can also impute
continuous two-level data (normal model, pan, second-level variables).
Passive imputation can be used to maintain consistency between variables.
Various diagnostic plots are available to inspect the quality of the
imputations.
Author: Stef van Buuren [aut, cre],
Karin Groothuis-Oudshoorn [aut],
Alexander Robitzsch [ctb],
Gerko Vink [ctb],
Lisa Doove [ctb],
Shahab Jolani [ctb],
Rianne Schouten [ctb],
Philipp Gaffert [ctb],
Florian Meinfelder [ctb],
Bernie Gray [ctb]
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Diff between mice versions 2.46.0 dated 2017-10-24 and 3.0.0 dated 2018-05-25
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mice-3.0.0/mice/man/mice.impute.norm.predict.Rd | 11 mice-3.0.0/mice/man/mice.impute.panImpute.Rd |only mice-3.0.0/mice/man/mice.impute.passive.Rd | 2 mice-3.0.0/mice/man/mice.impute.pmm.Rd | 9 mice-3.0.0/mice/man/mice.impute.polr.Rd | 4 mice-3.0.0/mice/man/mice.impute.polyreg.Rd | 4 mice-3.0.0/mice/man/mice.impute.quadratic.Rd | 15 mice-3.0.0/mice/man/mice.impute.rf.Rd | 7 mice-3.0.0/mice/man/mice.impute.ri.Rd | 4 mice-3.0.0/mice/man/mice.impute.sample.Rd | 2 mice-3.0.0/mice/man/mice.mids.Rd | 22 mice-3.0.0/mice/man/mice.theme.Rd | 4 mice-3.0.0/mice/man/mids-class.Rd | 124 +- mice-3.0.0/mice/man/mids2mplus.Rd | 2 mice-3.0.0/mice/man/mids2spss.Rd | 6 mice-3.0.0/mice/man/mipo.Rd |only mice-3.0.0/mice/man/mira-class.Rd | 4 mice-3.0.0/mice/man/name.blocks.Rd |only mice-3.0.0/mice/man/name.formulas.Rd |only mice-3.0.0/mice/man/nelsonaalen.Rd | 7 mice-3.0.0/mice/man/nhanes.Rd | 4 mice-3.0.0/mice/man/nhanes2.Rd | 2 mice-3.0.0/mice/man/nimp.Rd |only mice-3.0.0/mice/man/norm.draw.Rd | 16 mice-3.0.0/mice/man/pattern.Rd | 11 mice-3.0.0/mice/man/plot.mids.Rd | 7 mice-3.0.0/mice/man/pmm.match.Rd | 2 mice-3.0.0/mice/man/pool.Rd | 111 +- mice-3.0.0/mice/man/pool.compare.Rd | 70 - mice-3.0.0/mice/man/pool.r.squared.Rd | 6 mice-3.0.0/mice/man/pool.scalar.Rd | 11 mice-3.0.0/mice/man/popmis.Rd | 2 mice-3.0.0/mice/man/pops.Rd | 9 mice-3.0.0/mice/man/potthoffroy.Rd | 9 mice-3.0.0/mice/man/print.Rd | 19 mice-3.0.0/mice/man/print.mads.Rd | 2 mice-3.0.0/mice/man/quickpred.Rd | 8 mice-3.0.0/mice/man/rbind.mids.Rd | 49 - mice-3.0.0/mice/man/selfreport.Rd | 7 mice-3.0.0/mice/man/squeeze.Rd | 2 mice-3.0.0/mice/man/stripplot.mids.Rd | 8 mice-3.0.0/mice/man/summary.Rd | 28 mice-3.0.0/mice/man/supports.transparent.Rd | 2 mice-3.0.0/mice/man/tbc.Rd | 9 mice-3.0.0/mice/man/version.Rd | 2 mice-3.0.0/mice/man/walking.Rd | 7 mice-3.0.0/mice/man/windspeed.Rd | 4 mice-3.0.0/mice/man/with.mids.Rd | 2 mice-3.0.0/mice/man/xyplot.mids.Rd | 6 mice-3.0.0/mice/tests/testthat/Rplots.pdf |only mice-3.0.0/mice/tests/testthat/test-D1.R |only mice-3.0.0/mice/tests/testthat/test-D3.R |only mice-3.0.0/mice/tests/testthat/test-ampute.R |only mice-3.0.0/mice/tests/testthat/test-anova.R |only mice-3.0.0/mice/tests/testthat/test-as.mids.R | 26 mice-3.0.0/mice/tests/testthat/test-blocks.R |only mice-3.0.0/mice/tests/testthat/test-blots.R |only mice-3.0.0/mice/tests/testthat/test-cbind.R | 126 ++ mice-3.0.0/mice/tests/testthat/test-check.formula.R |only mice-3.0.0/mice/tests/testthat/test-check.visitSequence.R |only mice-3.0.0/mice/tests/testthat/test-complete.R |only mice-3.0.0/mice/tests/testthat/test-fix.coef.R |only mice-3.0.0/mice/tests/testthat/test-formulas.R |only mice-3.0.0/mice/tests/testthat/test-loggedEvents.R |only mice-3.0.0/mice/tests/testthat/test-make.predictorMatrix.R |only mice-3.0.0/mice/tests/testthat/test-mice-initialize.R |only mice-3.0.0/mice/tests/testthat/test-mice.R | 154 +++ mice-3.0.0/mice/tests/testthat/test-mice.impute.2l.bin.R |only mice-3.0.0/mice/tests/testthat/test-mice.impute.2l.lmer.R |only mice-3.0.0/mice/tests/testthat/test-mice.impute.2l.norm.R |only mice-3.0.0/mice/tests/testthat/test-mice.impute.jomoImpute.R |only mice-3.0.0/mice/tests/testthat/test-mice.impute.norm.R |only mice-3.0.0/mice/tests/testthat/test-mice.impute.panImpute.R |only mice-3.0.0/mice/tests/testthat/test-mice.impute.pmm.R | 2 mice-3.0.0/mice/tests/testthat/test-mice.impute.polr.R |only mice-3.0.0/mice/tests/testthat/test-mira.R |only mice-3.0.0/mice/tests/testthat/test-pool.R |only mice-3.0.0/mice/tests/testthat/test-rbind.R | 81 + mice-3.0.0/mice/tests/testthat/test-remove.lindep.R |only mice-3.0.0/mice/tests/testthat/test-update.design.R |only mice-3.0.0/mice/vignettes/resources.Rmd | 8 365 files changed, 1979 insertions(+), 1483 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between sparklyr versions 0.8.3 dated 2018-05-12 and 0.8.4 dated 2018-05-25
DESCRIPTION | 9 MD5 | 54 +- NAMESPACE | 2 NEWS.md | 19 R/connection_viewer.R | 56 ++ R/dbi_spark_result.R | 13 R/ml_classification_multilayer_perceptron_classifier.R | 21 R/ml_regression_generalized_linear_regression.R | 18 R/ml_regression_linear_regression.R | 21 R/ml_summary.R | 1 R/ml_utils.R | 7 R/mutation.R | 6 R/sdf_utils.R | 24 R/sdf_wrapper.R | 2 R/shell_connection.R | 5 R/spark_context_config.R | 39 + R/spark_version.R | 9 R/tidiers_ml_linear_models.R | 4 README.md | 104 ++-- inst/icons/edit-sql.png |only man/ml_multilayer_perceptron_classifier.Rd | 19 man/ml_random_forest.Rd | 2 man/sdf_debug_string.Rd |only man/spark_configuration.Rd |only man/spark_context_config.Rd | 4 tests/testthat/logs/log4j.spark.log | 416 +---------------- tests/testthat/logs/log4j.spark.log.2018-05-01 |only tests/testthat/logs/log4j.spark.log.2018-05-15 |only tests/testthat/test-broom.R | 6 tests/testthat/test-spark-dynamic-config.R |only tests/testthat/test-spark-utils.R | 6 31 files changed, 382 insertions(+), 485 deletions(-)
Title: Wraps the API for the Brazilian Chamber of Deputies
Description: Provides propositions, votings, deputies and parties data from
Brazilian lower house <https://dadosabertos.camara.leg.br> in data frames.
Author: Paulo Vinícius Soares [aut, cre],
Nazareno Andrade [aut],
Laboratório Analytics (UFCG) [cph, fnd]
Maintainer: Paulo Vinícius Soares <paulo.soares@ccc.ufcg.edu.br>
Diff between rcongresso versions 0.3.2 dated 2018-01-26 and 0.4.6 dated 2018-05-25
rcongresso-0.3.2/rcongresso/inst/doc/purrr-e-rcongresso.R |only rcongresso-0.3.2/rcongresso/inst/doc/purrr-e-rcongresso.Rmd |only rcongresso-0.3.2/rcongresso/inst/doc/purrr-e-rcongresso.html |only rcongresso-0.3.2/rcongresso/man/fetch_status_proposicao.Rd |only rcongresso-0.3.2/rcongresso/man/fetch_ultimo_status_deputado.Rd |only rcongresso-0.3.2/rcongresso/vignettes/purrr-e-rcongresso.Rmd |only rcongresso-0.4.6/rcongresso/DESCRIPTION | 10 rcongresso-0.4.6/rcongresso/MD5 | 66 +- rcongresso-0.4.6/rcongresso/R/colunas_constants.R |only rcongresso-0.4.6/rcongresso/R/constants.R | 9 rcongresso-0.4.6/rcongresso/R/deputados.R | 90 +- rcongresso-0.4.6/rcongresso/R/partidos.R |only rcongresso-0.4.6/rcongresso/R/proposicoes.R | 81 +- rcongresso-0.4.6/rcongresso/R/utils.R | 190 ++++-- rcongresso-0.4.6/rcongresso/R/votacoes.R | 64 +- rcongresso-0.4.6/rcongresso/README.md | 4 rcongresso-0.4.6/rcongresso/build/vignette.rds |binary rcongresso-0.4.6/rcongresso/inst/doc/introducao-rcongresso.html | 196 ++++-- rcongresso-0.4.6/rcongresso/inst/doc/utilizando-fetch-proposicao.R | 6 rcongresso-0.4.6/rcongresso/inst/doc/utilizando-fetch-proposicao.Rmd | 6 rcongresso-0.4.6/rcongresso/inst/doc/utilizando-fetch-proposicao.html | 311 ++++++---- rcongresso-0.4.6/rcongresso/man/fetch_deputado.Rd | 10 rcongresso-0.4.6/rcongresso/man/fetch_despesas_deputado.Rd | 24 rcongresso-0.4.6/rcongresso/man/fetch_id_partido.Rd |only rcongresso-0.4.6/rcongresso/man/fetch_id_proposicao.Rd | 2 rcongresso-0.4.6/rcongresso/man/fetch_orientacoes.Rd | 2 rcongresso-0.4.6/rcongresso/man/fetch_partido.Rd |only rcongresso-0.4.6/rcongresso/man/fetch_proposicao.Rd | 3 rcongresso-0.4.6/rcongresso/man/fetch_proposicao_from_votacao.Rd | 2 rcongresso-0.4.6/rcongresso/man/fetch_relacionadas.Rd |only rcongresso-0.4.6/rcongresso/man/fetch_votacao.Rd | 2 rcongresso-0.4.6/rcongresso/man/fetch_votos.Rd | 2 rcongresso-0.4.6/rcongresso/man/get_votos_partidos.Rd | 2 rcongresso-0.4.6/rcongresso/man/ultima_votacao.Rd | 2 rcongresso-0.4.6/rcongresso/tests/testthat/test_deputados.R | 144 ++-- rcongresso-0.4.6/rcongresso/tests/testthat/test_partidos.R |only rcongresso-0.4.6/rcongresso/tests/testthat/test_proposicoes.R | 180 ++--- rcongresso-0.4.6/rcongresso/tests/testthat/test_votacoes.R | 146 ++-- rcongresso-0.4.6/rcongresso/vignettes/purrr-e-rcongresso.R |only rcongresso-0.4.6/rcongresso/vignettes/purrr-e-rcongresso.html |only rcongresso-0.4.6/rcongresso/vignettes/utilizando-fetch-proposicao.Rmd | 6 41 files changed, 937 insertions(+), 623 deletions(-)
Title: Estimate the Gene Expression Levels and Component Proportions of
the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor
Samples
Description: Model cell type heterogeneity of bulk renal cell carcinoma. The observed gene expression in bulk tumor sample is modeled by a log-normal distribution with the location parameter structured as a linear combination of the component-specific gene expressions.
Author: Tao Wang
Maintainer: Tao Wang <tao.wang@utsouthwestern.edu>
Diff between DisHet versions 0.2.2 dated 2018-03-13 and 1.0.0 dated 2018-05-25
DisHet-0.2.2/DisHet/R/data.R |only DisHet-0.2.2/DisHet/R/eTME_signatures.R |only DisHet-1.0.0/DisHet/DESCRIPTION | 8 +-- DisHet-1.0.0/DisHet/MD5 | 10 +--- DisHet-1.0.0/DisHet/NEWS | 2 DisHet-1.0.0/DisHet/data/eTME_signatures.RData |binary DisHet-1.0.0/DisHet/man/eTME_signatures.Rd | 57 +++++++++++++------------ 7 files changed, 39 insertions(+), 38 deletions(-)
Title: Hive Plots of R Package Function Calls
Description: Analyzes the function calls in an R package and creates a hive plot of the calls, dividing them among functions that only make outgoing calls (sources), functions that have only incoming calls (sinks), and those that have both incoming calls and make outgoing calls (managers). Function calls can be mapped by their absolute numbers, their normalized absolute numbers, or their rank. FuncMap should be useful for comparing packages at a high level for their overall design. Plus, it's just plain fun. The hive plot concept was developed by Martin Krzywinski (www.hiveplot.com) and inspired this package. Note: this package is maintained for historical reasons. HiveR is a full package for creating hive plots.
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between FuncMap versions 1.0.8 dated 2015-07-15 and 1.0.10 dated 2018-05-25
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 4 ++++ man/FuncMap-package.Rd | 13 +------------ 4 files changed, 12 insertions(+), 19 deletions(-)
Title: Bayesian Non- And Semi-Parametric Model Fitting
Description: Markov chain Monte Carlo algorithms for non- and semi-parametric models: 1. Dirichlet process mixtures & 2. spike-slab for variable selection in mean/variance regression models.
Author: Georgios Papageorgiou
Maintainer: Georgios Papageorgiou <gpapageo@gmail.com>
Diff between BNSP versions 2.0.4 dated 2018-05-24 and 2.0.5 dated 2018-05-25
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- man/BNSP-package.Rd | 8 ++++++-- src/OneResLtnt.c | 2 +- src/other.functions.h | 25 +++++++++++++++---------- 5 files changed, 30 insertions(+), 21 deletions(-)
Title: Succinct and Correct Statistical Summaries for Reports
Description: Succinctly and correctly format statistical summaries of
various models and tests (F-test, Chi-Sq-test, Fisher-test, T-test, and rank-significance). The main purpose is unified reporting and planning
of experimental results, working around issue such as the difficulty of
extracting model summary facts (such as with 'lm'/'glm'). This package also
includes empirical tests, such as bootstrap estimates.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between sigr versions 0.2.5 dated 2018-04-24 and 0.2.6 dated 2018-05-25
DESCRIPTION | 12 ++-- MD5 | 53 ++++++++++--------- NAMESPACE | 3 - NEWS.md | 9 +++ R/AUCTest.R | 30 +++-------- R/ChiSqTest.R | 23 +++----- R/CohenD.R | 12 ++-- R/CorTest.R | 15 ++--- R/EmpiricalFns.R | 24 ++------ R/FTest.R | 77 +++++++++++----------------- R/FisherTest.R | 17 ++---- R/TTest.R | 14 ++--- R/fns.R | 3 + R/pwr.R | 24 ++++---- R/sigr.R | 2 R/toPresentation.R | 99 +++++++++++++++++++++++++++++++++---- README.md | 2 inst/doc/lmExample.html | 9 +-- inst/doc/sigrFormatting.html | 10 +-- man/as.character.sigr_statistic.Rd |only man/format.sigr_statistic.Rd | 2 man/print.sigr_statistic.Rd | 2 man/wrapFTest.Rd | 4 - man/wrapFTest.data.frame.Rd | 6 +- man/wrapFTest.lm.Rd | 6 +- man/wrapFTest.summary.lm.Rd | 6 +- man/wrapFTestImpl.Rd | 10 ++- man/wrapPWR.power.htest.Rd | 10 ++- 28 files changed, 271 insertions(+), 213 deletions(-)
Title: Coloured Formatting for Columns
Description: Provides a 'pillar' generic designed for formatting columns
of data using the full range of colours provided by modern terminals.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between pillar versions 1.2.2 dated 2018-04-26 and 1.2.3 dated 2018-05-25
DESCRIPTION | 8 ++++---- MD5 | 26 ++++++++++++++++++-------- NEWS.md | 8 ++++++++ R/multi.R | 4 ++-- R/shaft.R | 6 ++++-- man/pillar_shaft.Rd | 5 ++++- tests/testthat/bw-out/sep.txt |only tests/testthat/out-native/letters-inf.txt |only tests/testthat/out-native/multi-extra-10.txt |only tests/testthat/out-native/multi-extra-20.txt |only tests/testthat/out-native/multi-extra-30.txt |only tests/testthat/out-native/multi-extra-35.txt |only tests/testthat/out-native/multi-extra-40.txt |only tests/testthat/out-native/sep.txt |only tests/testthat/out-native/utf8.txt |only tests/testthat/out/sep.txt |only tests/testthat/test-format_character.R | 2 +- tests/testthat/test-format_decimal.R | 10 +++++----- tests/testthat/test-format_multi.R | 10 +++++++++- 19 files changed, 55 insertions(+), 24 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting including the introduced here Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics and a built-in help system. A confirmatory factor analysis of multiple indicator measurement models is available, as are pedagogical routines for data simulation such as for the Central Limit Theorem. Compatible with 'RStudio' and 'knitr' including generation of R markdown instructions for interpretative output.
Author: David W. Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 3.7.2 dated 2018-03-30 and 3.7.4 dated 2018-05-25
DESCRIPTION | 10 MD5 | 90 - NAMESPACE | 3 NEWS | 94 + R/BarChart.R | 177 ++- R/Density.R | 18 R/Histogram.R | 666 ++++++----- R/LineChart.R | 73 - R/PieChart.R | 66 - R/Plot.R | 2957 ++++++++++++++++++++++++++--------------------------- R/Read.R | 14 R/Regression.R | 2 R/SummaryStats.R | 20 R/VariableLabels.R | 12 R/Write.R | 2 R/bar.zlattice.R | 13 R/bc.data.frame.R | 47 R/bc.zmain.R | 1447 ++++++++++++++----------- R/dn.zmain.R | 2 R/getColors.R | 468 +++++--- R/hst.stats.R | 1 R/hst.zmain.R | 46 R/label.R | 5 R/lc.zmain.R | 23 R/pc.zmain.R | 68 - R/plt.zlattice.R | 3 R/plt.zlegend.R | 2 R/plt.zmain.R | 2149 +++++++++++++++++++------------------- R/plt.ztxt.R | 4 R/reg.z5Plot.R | 7 R/ss.zfactor.R | 127 +- R/ss.znumeric.R | 2 R/style.R | 85 + R/style.zshow.R | 420 +++---- R/zzz.R | 475 ++++---- man/BarChart.Rd | 280 +++-- man/Density.Rd | 19 man/Help.Rd | 10 man/Histogram.Rd | 116 +- man/LineChart.Rd | 4 man/PieChart.Rd | 58 - man/Plot.Rd | 55 man/Regression.Rd | 2 man/getColors.Rd | 304 +++-- man/label.Rd | 15 man/style.Rd | 68 - 46 files changed, 5738 insertions(+), 4791 deletions(-)
Title: Knockoffs for Hidden Markov Models and Genetic Data
Description: Generates knockoff variables from discrete Markov chains and hidden Markov models, with specific support for genetic data.
For more information, see the website below and the accompanying paper: Sesia et al.,
"Gene Hunting with Knockoffs for Hidden Markov Models",
2017, <arXiv:1706.04677>.
Author: Matteo Sesia
Maintainer: Matteo Sesia <msesia@stanford.edu>
Diff between SNPknock versions 0.5.1 dated 2018-01-09 and 0.7.0 dated 2018-05-25
SNPknock-0.5.1/SNPknock/inst/extdata/X.RData |only SNPknock-0.5.1/SNPknock/inst/extdata/X.inp |only SNPknock-0.5.1/SNPknock/inst/extdata/X_alphahat.txt |only SNPknock-0.5.1/SNPknock/inst/extdata/X_origchars |only SNPknock-0.5.1/SNPknock/inst/extdata/X_rhat.txt |only SNPknock-0.5.1/SNPknock/inst/extdata/X_thetahat.txt |only SNPknock-0.5.1/SNPknock/src/knock_interface.cpp |only SNPknock-0.5.1/SNPknock/src/knock_interface.h |only SNPknock-0.7.0/SNPknock/DESCRIPTION | 18 SNPknock-0.7.0/SNPknock/MD5 | 102 +-- SNPknock-0.7.0/SNPknock/NEWS | 16 SNPknock-0.7.0/SNPknock/R/RcppExports.R | 22 SNPknock-0.7.0/SNPknock/R/fastphase.R | 352 ++++++++--- SNPknock-0.7.0/SNPknock/R/knockoffs.R | 294 ++++++++- SNPknock-0.7.0/SNPknock/R/models.R | 12 SNPknock-0.7.0/SNPknock/build/vignette.rds |binary SNPknock-0.7.0/SNPknock/inst/doc/SNPknock.Rmd | 13 SNPknock-0.7.0/SNPknock/inst/doc/SNPknock.html | 65 +- SNPknock-0.7.0/SNPknock/inst/doc/genotypes.R | 57 + SNPknock-0.7.0/SNPknock/inst/doc/genotypes.Rmd | 123 +++ SNPknock-0.7.0/SNPknock/inst/doc/genotypes.html | 111 ++- SNPknock-0.7.0/SNPknock/inst/extdata/genotypes.RData |only SNPknock-0.7.0/SNPknock/inst/extdata/genotypes.inp |only SNPknock-0.7.0/SNPknock/inst/extdata/genotypes_alphahat.txt |only SNPknock-0.7.0/SNPknock/inst/extdata/genotypes_origchars |only SNPknock-0.7.0/SNPknock/inst/extdata/genotypes_rhat.txt |only SNPknock-0.7.0/SNPknock/inst/extdata/genotypes_thetahat.txt |only SNPknock-0.7.0/SNPknock/inst/extdata/haplotypes.RData |only SNPknock-0.7.0/SNPknock/inst/extdata/haplotypes.inp |only SNPknock-0.7.0/SNPknock/inst/extdata/haplotypes_alphahat.txt |only SNPknock-0.7.0/SNPknock/inst/extdata/haplotypes_origchars |only SNPknock-0.7.0/SNPknock/inst/extdata/haplotypes_rhat.txt |only SNPknock-0.7.0/SNPknock/inst/extdata/haplotypes_thetahat.txt |only SNPknock-0.7.0/SNPknock/man/GenotypeModel_wrapper.Rd |only SNPknock-0.7.0/SNPknock/man/HaplotypeModel_wrapper.Rd |only SNPknock-0.7.0/SNPknock/man/SNPknock.fp.loadFit.Rd | 48 - SNPknock-0.7.0/SNPknock/man/SNPknock.fp.loadFit_hmm.Rd |only SNPknock-0.7.0/SNPknock/man/SNPknock.fp.runFastPhase.Rd | 40 - SNPknock-0.7.0/SNPknock/man/SNPknock.fp.writeX.Rd | 31 SNPknock-0.7.0/SNPknock/man/SNPknock.knockoffDMC.Rd | 17 SNPknock-0.7.0/SNPknock/man/SNPknock.knockoffGenotypes.Rd |only SNPknock-0.7.0/SNPknock/man/SNPknock.knockoffHMM.Rd | 17 SNPknock-0.7.0/SNPknock/man/SNPknock.knockoffHaplotypes.Rd |only SNPknock-0.7.0/SNPknock/man/SNPknock.models.sampleDMC.Rd | 2 SNPknock-0.7.0/SNPknock/man/SNPknock.models.sampleHMM.Rd | 2 SNPknock-0.7.0/SNPknock/man/assemble_Q.Rd | 4 SNPknock-0.7.0/SNPknock/man/assemble_pEmit.Rd | 4 SNPknock-0.7.0/SNPknock/man/assemble_pEmit_phased.Rd |only SNPknock-0.7.0/SNPknock/man/assemble_pInit.Rd | 4 SNPknock-0.7.0/SNPknock/man/assemble_pInit_phased.Rd |only SNPknock-0.7.0/SNPknock/man/compute_Q1.Rd | 4 SNPknock-0.7.0/SNPknock/man/knockoffDMC_wrapper.Rd | 2 SNPknock-0.7.0/SNPknock/man/knockoffHMM_wrapper.Rd | 3 SNPknock-0.7.0/SNPknock/man/loadEMParameters.Rd | 4 SNPknock-0.7.0/SNPknock/src/RcppExports.cpp | 56 + SNPknock-0.7.0/SNPknock/src/dmc_knock.cpp | 18 SNPknock-0.7.0/SNPknock/src/dmc_knock.h | 7 SNPknock-0.7.0/SNPknock/src/genotypes.cpp |only SNPknock-0.7.0/SNPknock/src/genotypes.h |only SNPknock-0.7.0/SNPknock/src/haplotypes.cpp |only SNPknock-0.7.0/SNPknock/src/haplotypes.h |only SNPknock-0.7.0/SNPknock/src/hmm_knock.cpp | 34 - SNPknock-0.7.0/SNPknock/src/hmm_knock.h | 5 SNPknock-0.7.0/SNPknock/src/interface.cpp |only SNPknock-0.7.0/SNPknock/src/interface.h |only SNPknock-0.7.0/SNPknock/src/knockoffs.cpp | 121 +++ SNPknock-0.7.0/SNPknock/vignettes/SNPknock.Rmd | 13 SNPknock-0.7.0/SNPknock/vignettes/bibliography.bib |only SNPknock-0.7.0/SNPknock/vignettes/genotypes.Rmd | 123 +++ 69 files changed, 1310 insertions(+), 434 deletions(-)
Title: Import 'Stata' Data Files
Description: Function to read and write the 'Stata' file format.
Author: Jan Marvin Garbuszus [aut],
Sebastian Jeworutzki [aut, cre]
(<https://orcid.org/0000-0002-2671-5253>),
R Core Team [cph],
Magnus Thor Torfason [ctb],
Luke M. Olson [ctb],
Giovanni Righi [ctb],
Kevin Jin [ctb]
Maintainer: Sebastian Jeworutzki <Sebastian.Jeworutzki@ruhr-uni-bochum.de>
Diff between readstata13 versions 0.9.0 dated 2017-05-05 and 0.9.1 dated 2018-05-25
readstata13-0.9.0/readstata13/inst/extdata/test.zip |only readstata13-0.9.0/readstata13/src/rcpp_pre13_savestata.cpp |only readstata13-0.9.0/readstata13/src/rcpp_readstata.cpp |only readstata13-0.9.0/readstata13/src/rcpp_savestata.cpp |only readstata13-0.9.0/readstata13/src/register.c |only readstata13-0.9.1/readstata13/DESCRIPTION | 17 readstata13-0.9.1/readstata13/MD5 | 69 +- readstata13-0.9.1/readstata13/NAMESPACE | 2 readstata13-0.9.1/readstata13/NEWS | 9 readstata13-0.9.1/readstata13/R/RcppExports.R | 12 readstata13-0.9.1/readstata13/R/dbcal.R | 8 readstata13-0.9.1/readstata13/R/read.R | 103 ++- readstata13-0.9.1/readstata13/R/readstata13.R | 4 readstata13-0.9.1/readstata13/R/save.R | 29 - readstata13-0.9.1/readstata13/R/tools.R | 153 +++-- readstata13-0.9.1/readstata13/README.md | 94 +-- readstata13-0.9.1/readstata13/inst/include/read_data.h |only readstata13-0.9.1/readstata13/inst/include/read_dta.h | 6 readstata13-0.9.1/readstata13/inst/include/read_pre13_dta.h | 4 readstata13-0.9.1/readstata13/inst/include/readstata.h | 125 ++++ readstata13-0.9.1/readstata13/inst/include/statadefines.h | 2 readstata13-0.9.1/readstata13/man/get.label.Rd | 5 readstata13-0.9.1/readstata13/man/get.label.name.Rd | 12 readstata13-0.9.1/readstata13/man/get.label.tables.Rd |only readstata13-0.9.1/readstata13/man/get.lang.Rd | 8 readstata13-0.9.1/readstata13/man/get.origin.codes.Rd | 7 readstata13-0.9.1/readstata13/man/read.dta13.Rd | 54 + readstata13-0.9.1/readstata13/man/readstata13.Rd | 4 readstata13-0.9.1/readstata13/man/save.dta13.Rd | 9 readstata13-0.9.1/readstata13/man/set.label.Rd | 11 readstata13-0.9.1/readstata13/man/set.lang.Rd | 9 readstata13-0.9.1/readstata13/man/varlabel.Rd | 6 readstata13-0.9.1/readstata13/src/RcppExports.cpp | 45 + readstata13-0.9.1/readstata13/src/read.cpp |only readstata13-0.9.1/readstata13/src/read_data.cpp |only readstata13-0.9.1/readstata13/src/read_dta.cpp | 347 +++--------- readstata13-0.9.1/readstata13/src/read_pre13_dta.cpp | 238 ++------ readstata13-0.9.1/readstata13/src/save_dta.cpp |only readstata13-0.9.1/readstata13/src/save_pre13_dta.cpp |only readstata13-0.9.1/readstata13/tests/testthat/test_read.R | 1 readstata13-0.9.1/readstata13/tests/testthat/test_save.R | 207 ++++++- 41 files changed, 945 insertions(+), 655 deletions(-)
Title: Analyze Cricketers Based on ESPN Cricinfo Statsguru
Description: Tools for analyzing performances of cricketers based on stats in
ESPN Cricinfo Statsguru. The toolset can be used for analysis of Tests,ODIs
and Twenty20 matches of both batsmen and bowlers.
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
Diff between cricketr versions 0.0.14 dated 2017-03-12 and 0.0.15 dated 2018-05-25
DESCRIPTION | 8 +++---- MD5 | 7 +++--- README.md | 9 -------- build |only man/cricketr-package.Rd | 51 ++++++++++++++++++++++++++++++++---------------- 5 files changed, 42 insertions(+), 33 deletions(-)
Title: Truncated Maximum Likelihood Fit and Robust Accelerated Failure
Time Regression for Gaussian and Log-Weibull Case
Description: R functions for the computation of the truncated maximum
likelihood and the robust accelerated failure time regression
for gaussian and log-Weibull case.
Author: Alfio Marazzi <Alfio.Marazzi@chuv.ch>, Jean-Luc Muralti
Maintainer: A. Randriamiharisoa <Alex.Randriamiharisoa@chuv.ch>
Diff between RobustAFT versions 1.4-1 dated 2015-12-08 and 1.4-2 dated 2018-05-25
RobustAFT-1.4-1/RobustAFT/R/dfcomn.R |only RobustAFT-1.4-1/RobustAFT/R/hysest.R |only RobustAFT-1.4-1/RobustAFT/man/RobustAFT.package.Rd |only RobustAFT-1.4-1/RobustAFT/src/robcom.f |only RobustAFT-1.4-2/RobustAFT/DESCRIPTION | 12 RobustAFT-1.4-2/RobustAFT/MD5 | 42 RobustAFT-1.4-2/RobustAFT/NAMESPACE | 7 RobustAFT-1.4-2/RobustAFT/R/AV.MM.gauss.R | 15 RobustAFT-1.4-2/RobustAFT/R/MM.E.gauss.R | 8 RobustAFT-1.4-2/RobustAFT/R/Nrm2.r | 33 RobustAFT-1.4-2/RobustAFT/R/Psi2phi.R |only RobustAFT-1.4-2/RobustAFT/R/Pspphi.R |only RobustAFT-1.4-2/RobustAFT/R/TML.gauss.R | 6 RobustAFT-1.4-2/RobustAFT/R/TML.logweibull.R | 7 RobustAFT-1.4-2/RobustAFT/R/TML.noncensored.R | 18 RobustAFT-1.4-2/RobustAFT/R/TML1.control.R | 7 RobustAFT-1.4-2/RobustAFT/R/TML1.noncensored.R | 7 RobustAFT-1.4-2/RobustAFT/R/dfcomn2.R | 18 RobustAFT-1.4-2/RobustAFT/R/hysestz.R |only RobustAFT-1.4-2/RobustAFT/R/liepsu.R | 16 RobustAFT-1.4-2/RobustAFT/R/s.eq.Gauss.R | 4 RobustAFT-1.4-2/RobustAFT/R/s.eq.logW.R | 4 RobustAFT-1.4-2/RobustAFT/man/RobustAFT-package.Rd |only RobustAFT-1.4-2/RobustAFT/man/dfcomn2.Rd |only RobustAFT-1.4-2/RobustAFT/src/init.c |only RobustAFT-1.4-2/RobustAFT/src/robaft.f | 3706 ++++++++++++++++++++- RobustAFT-1.4-2/RobustAFT/src/tmlest.f | 37 27 files changed, 3716 insertions(+), 231 deletions(-)
Title: Optimal Segmentation Subject to Up-Down Constraints
Description: Computes optimal changepoint models using the
Poisson likelihood for non-negative count data,
subject to the PeakSeg constraint:
the first change must be up, second change down, third change up, etc.
For more info about the models and algorithms,
read "A log-linear time algorithm for constrained changepoint detection"
<arXiv:1703.03352> by TD Hocking et al.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between PeakSegOptimal versions 2017.07.12 dated 2017-07-12 and 2018.05.25 dated 2018-05-25
PeakSegOptimal-2017.07.12/PeakSegOptimal/tests/testthat/plot.R |only PeakSegOptimal-2018.05.25/PeakSegOptimal/DESCRIPTION | 6 +++--- PeakSegOptimal-2018.05.25/PeakSegOptimal/MD5 | 4 ++-- PeakSegOptimal-2018.05.25/PeakSegOptimal/tests/test |only 4 files changed, 5 insertions(+), 5 deletions(-)
More information about PeakSegOptimal at CRAN
Permanent link
Title: Open Population Capture-Recapture
Description: Functions for non-spatial and spatial open-population capture-recapture analysis.
Author: Murray Efford [aut, cre] (<https://orcid.org/0000-0001-5231-5184>)
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between openCR versions 1.1.2 dated 2018-04-21 and 1.2.0 dated 2018-05-25
openCR-1.1.2/openCR/src/getND.cpp |only openCR-1.1.2/openCR/src/prwisecrmulti.cpp |only openCR-1.2.0/openCR/DESCRIPTION | 17 openCR-1.2.0/openCR/MD5 | 104 +-- openCR-1.2.0/openCR/NAMESPACE | 17 openCR-1.2.0/openCR/NEWS | 37 - openCR-1.2.0/openCR/R/JS.counts.R |only openCR-1.2.0/openCR/R/PCH1.R | 9 openCR-1.2.0/openCR/R/RcppExports.R | 52 - openCR-1.2.0/openCR/R/cyclicfixing.R | 63 +- openCR-1.2.0/openCR/R/derived.r | 507 +++++++++------- openCR-1.2.0/openCR/R/loglik.R | 469 ++++++++------- openCR-1.2.0/openCR/R/m.array.R |only openCR-1.2.0/openCR/R/methods.R | 86 +- openCR-1.2.0/openCR/R/moving.fit.R |only openCR-1.2.0/openCR/R/openCR.design.R | 35 - openCR-1.2.0/openCR/R/openCR.esa.r | 107 ++- openCR-1.2.0/openCR/R/openCR.fit.R | 182 +++-- openCR-1.2.0/openCR/R/openCR.make.newdata.R | 5 openCR-1.2.0/openCR/R/openCR.pdot.r | 3 openCR-1.2.0/openCR/R/plotcode.r |only openCR-1.2.0/openCR/R/posterior.R |only openCR-1.2.0/openCR/R/predict.openCR.R | 6 openCR-1.2.0/openCR/R/prwisecr.R | 54 + openCR-1.2.0/openCR/R/simulate.R | 73 +- openCR-1.2.0/openCR/R/ucare.R |only openCR-1.2.0/openCR/R/utility.R | 323 ---------- openCR-1.2.0/openCR/build/vignette.rds |binary openCR-1.2.0/openCR/inst/doc/openCR-manual.pdf |binary openCR-1.2.0/openCR/inst/doc/openCR-vignette.R | 22 openCR-1.2.0/openCR/inst/doc/openCR-vignette.Rmd | 103 ++- openCR-1.2.0/openCR/inst/doc/openCR-vignette.pdf |binary openCR-1.2.0/openCR/man/derived.Rd | 12 openCR-1.2.0/openCR/man/dipper.Rd | 6 openCR-1.2.0/openCR/man/fieldvoleCH.Rd | 2 openCR-1.2.0/openCR/man/manip.Rd | 8 openCR-1.2.0/openCR/man/moving.fit.Rd |only openCR-1.2.0/openCR/man/openCR-internal.Rd | 57 + openCR-1.2.0/openCR/man/openCR-package.Rd | 9 openCR-1.2.0/openCR/man/openCR.fit.Rd | 21 openCR-1.2.0/openCR/man/simulate.Rd | 11 openCR-1.2.0/openCR/man/ucare.Rd |only openCR-1.2.0/openCR/man/utility.Rd | 5 openCR-1.2.0/openCR/src/Makevars |only openCR-1.2.0/openCR/src/Makevars.win | 3 openCR-1.2.0/openCR/src/PCH1.cpp | 416 ++++++++----- openCR-1.2.0/openCR/src/RcppExports.cpp | 417 +++++-------- openCR-1.2.0/openCR/src/geth.cpp |only openCR-1.2.0/openCR/src/makegk.cpp | 79 ++ openCR-1.2.0/openCR/src/pradel.cpp | 96 +-- openCR-1.2.0/openCR/src/prwi.cpp | 69 +- openCR-1.2.0/openCR/src/prwiparallel.cpp |only openCR-1.2.0/openCR/src/prwisecr.cpp | 390 +++++------- openCR-1.2.0/openCR/src/prwisecrparallel.cpp |only openCR-1.2.0/openCR/src/utils.cpp | 620 +++++++++++--------- openCR-1.2.0/openCR/src/utils.h | 278 +++++--- openCR-1.2.0/openCR/vignettes/openCR-vignette.Rmd | 103 ++- openCR-1.2.0/openCR/vignettes/openCR-vignette_cache |only openCR-1.2.0/openCR/vignettes/openCR-vignette_files |only 59 files changed, 2651 insertions(+), 2225 deletions(-)
Title: Fingertips Data for Public Health
Description: Fingertips (<http://fingertips.phe.org.uk/>) contains data for many indicators of public health in England. The underlying data is now more easily accessible by making use of the API.
Author: Sebastian Fox [aut, cre],
Julian Flowers [aut, ctb],
Simon Thelwall [ctb],
Duncan Gormansway [ctb],
Carl Ganz [ctb],
Crown Copyright 2018 [cph]
Maintainer: Sebastian Fox <sebastian.fox@phe.gov.uk>
Diff between fingertipsR versions 0.1.6 dated 2018-05-14 and 0.1.7 dated 2018-05-25
DESCRIPTION | 16 ++++-- MD5 | 32 ++++++------- NAMESPACE | 2 NEWS.md | 8 ++- R/area_types.R | 64 ++++++++++++++++++-------- R/fingertipsR.R | 3 - R/fingertips_data.R | 4 + R/indicator_metadata.R | 13 ++--- R/indicators.R | 9 ++- R/profiles.R | 8 ++- R/retrieve_data.R | 15 +++--- README.md | 3 - inst/doc/lifeExpectancy.html | 85 +++++++++++++++++++++++++++-------- inst/doc/selectIndicatorsRedRed.html | 2 man/nearest_neighbours.Rd | 13 ++++- tests/testthat/test-area_types.R | 6 ++ tests/testthat/test-indicators.R | 7 ++ 17 files changed, 202 insertions(+), 88 deletions(-)
Title: Direct Labels for Multicolor Plots
Description: An extensible framework
for automatically placing direct labels onto multicolor 'lattice' or
'ggplot2' plots.
Label positions are described using Positioning Methods
which can be re-used across several different plots.
There are heuristics for examining "trellis" and "ggplot" objects
and inferring an appropriate Positioning Method.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between directlabels versions 2017.03.31 dated 2017-04-08 and 2018.05.22 dated 2018-05-25
directlabels-2017.03.31/directlabels/man/directlabels-package.Rd |only directlabels-2017.03.31/directlabels/tests/doc |only directlabels-2018.05.22/directlabels/DESCRIPTION | 10 +-- directlabels-2018.05.22/directlabels/MD5 | 29 +--------- directlabels-2018.05.22/directlabels/R/ggplot2.R | 10 ++- directlabels-2018.05.22/directlabels/R/positioning.functions.R | 2 directlabels-2018.05.22/directlabels/man/direct.label.Rd | 1 7 files changed, 19 insertions(+), 33 deletions(-)
Title: Idealisation of Patch Clamp Recordings
Description: Allows for idealisation of patch clamp recordings by implementing the non-parametric JUmp Local dEconvolution Segmentation (JULES) filter, see F. Pein, I. Tecuapetla-Gómez, O. Schütte, C. Steinem, and A. Munk (2017) <arXiv:1706.03671>.
Author: Pein Florian [aut, cre],
Thomas Hotz [ctb],
Inder Tecuapetla-Gómez [ctb],
Timo Aspelmeier [ctb]
Maintainer: Pein Florian <fpein@uni-goettingen.de>
Diff between clampSeg versions 1.0-3 dated 2018-04-12 and 1.0-4 dated 2018-05-25
ChangeLog | 8 ++++++-- DESCRIPTION | 8 ++++---- MD5 | 4 ++-- 3 files changed, 12 insertions(+), 8 deletions(-)
Title: Tune Random Forest of the 'ranger' Package
Description: Tuning random forest with one line. The package is mainly based on the packages 'ranger' and 'mlrMBO'.
Author: Philipp Probst [aut, cre],
Simon Klau [ctb]
Maintainer: Philipp Probst <philipp_probst@gmx.de>
Diff between tuneRanger versions 0.1 dated 2018-03-14 and 0.2 dated 2018-05-25
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/tuneRanger.R | 11 +++++++---- man/tuneRanger.Rd | 10 +++++++--- 4 files changed, 21 insertions(+), 14 deletions(-)
Title: JavaScript Charts Tool
Description: Provides an R interface for using 'AmCharts' Library. Based on
'htmlwidgets', it provides a global architecture to generate 'JavaScript' source
code for charts. Most of classes in the library have their equivalent in R
with S4 classes; for those classes, not all properties have been referenced but
can easily be added in the constructors. Complex properties (e.g. 'JavaScript'
object) can be passed as named list. See examples at <http://datastorm-
open.github.io/introduction_ramcharts/> and <http://www.amcharts.com/> for
more information about the library. The package includes the free version
of 'AmCharts' Library. Its only limitation is a small link to the web site
displayed on your charts. If you enjoy this library, do not hesitate to refer
to this page <http://www.amcharts.com/online-store/> to purchase a licence,
and thus support its creators and get a period of Priority Support. See also
<http://www.amcharts.com/about/> for more information about 'AmCharts' company.
Author: Benoit Thieurmel [aut, cre],
Antanas Marcelionis [aut, cph] ('AmCharts' library in th directory
htmlwidgets/lib/amcharts, refer to http://www.amcharts.com/),
Jeffery Petit [aut, ctb],
Elena Salette [aut, ctb],
Titouan Robert [aut, ctb]
Maintainer: Benoit Thieurmel <benoit.thieurmel@datastorm.fr>
Diff between rAmCharts versions 2.1.6 dated 2018-02-07 and 2.1.7 dated 2018-05-25
DESCRIPTION | 8 ++-- MD5 | 19 ++++++----- NAMESPACE | 1 R/shiny_modules_timeSeries.R | 58 +++++++++++++++++++---------------- R/union_AmCharts.R | 25 +++++++++++++++ inst/conf.yaml | 3 + man/add_animate_dependency.Rd |only man/getCurrentStockData.Rd | 2 - man/getTransformTS.Rd | 2 - man/rAmCharts-shinymodules-ts.Rd | 2 - tests/testthat/test_getAggregateTS.R | 10 ------ 11 files changed, 79 insertions(+), 51 deletions(-)
Title: Test Analysis Modules
Description: Includes marginal maximum likelihood estimation and joint maximum
likelihood estimation for unidimensional and multidimensional
item response models. The package functionality covers the
Rasch model, 2PL model, 3PL model, generalized partial credit model,
multi-faceted Rasch model, nominal item response model,
structured latent class model, mixture distribution IRT models,
and located latent class models. Latent regression models and
plausible value imputation are also supported. For details see
Adams, Wilson and Wang, 1997 <doi:10.1177/0146621697211001>,
Adams, Wilson and Wu, 1997 <doi:10.3102/10769986022001047>,
Formann, 1982 <doi:10.1002/bimj.4710240209>,
Formann, 1992 <doi:10.1080/01621459.1992.10475229>.
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 2.11-93 dated 2018-05-02 and 2.12-18 dated 2018-05-25
DESCRIPTION | 8 MD5 | 788 +++++++++--------- NAMESPACE | 3 R/EAPrel.R | 10 R/IRT.WrightMap.R | 54 - R/IRT.data.tam.R | 4 R/IRT.drawPV.R | 20 R/IRT.expectedCounts.tam.R | 22 R/IRT.factor.scores.tam.R | 40 R/IRT.informationCurve.R | 60 - R/IRT.irfprob.tam.R | 32 R/IRT.itemfit.R | 16 R/IRT.likelihood.TAM.R | 26 R/IRT.linearCFA.R | 58 - R/IRT.modelfit.tam.R | 16 R/IRT.residuals.R | 22 R/IRT.simulate.R | 30 R/IRT.threshold.R | 24 R/IRT.truescore.R | 26 R/IRTLikelihood.cfa.R | 26 R/IRTLikelihood.ctt.R | 10 R/RcppExports.R | 74 - R/WLErel.R | 10 R/anova.tam.R | 31 R/cfa.extract.itempars.R | 56 - R/change.grep.lavpartable.R | 24 R/designMatrices.R | 126 +- R/designMatrices.mfr.R | 221 ++--- R/designMatrices.mfr2.R | 208 ++-- R/designMatrices.mfr_aux.R | 310 +++---- R/designMatrices.mfr_aux2.R | 182 ++-- R/designMatrices_aux.R | 198 ++-- R/designMatrices_aux2.R | 185 ++-- R/doparse.R | 78 - R/extend.label.group.R | 20 R/lavaanify.IRT.R | 48 - R/lavaanify.grep.MEASERR.R | 54 - R/lavaanify.grep.nonlinear.R | 70 - R/lavpartable.grep.underbrace.R | 36 R/lavpartable2lavsyntax.R | 28 R/msq.itemfit.R | 44 - R/msq.itemfit.R.R | 22 R/msq.itemfitWLE.R | 48 - R/plot.IRT.informationCurves.R | 22 R/plot.ctt.R | 54 - R/plot.tam.R | 212 ++-- R/plotDevianceTAM.R | 20 R/plot_tam_grouped_wle.R | 8 R/predict.tam.R | 6 R/print.tam.R | 18 R/print.tam.wle.R | 4 R/prior_list_include.R | 4 R/remove.duplicated.variances.lavsyn.R | 26 R/require_namespace_msg.R | 8 R/split.syn.string.R | 28 R/summary.msq.itemfit.R | 8 R/summary.msq.itemfitWLE.R | 10 R/summary.tam.Q3.R | 6 R/summary.tam.R | 70 - R/summary.tam.fit.R | 10 R/summary.tam.jml.R | 86 - R/summary.tam.linking.R | 8 R/summary.tam.mml.3pl.R | 97 +- R/summary.tam.modelfit.R | 10 R/summary.tam.pv.mcmc.R | 30 R/summary.tam.wle.R | 6 R/summary.tam_linking_2studies.R | 6 R/summary.tamaan.R | 30 R/summary_tamaan_3pl_discrete_distribution.R | 10 R/summary_tamaan_3pl_distr_mixture.R | 10 R/summary_tamaan_3pl_intro.R | 46 - R/summary_tamaan_normal_skillspace.R | 14 R/tam.Q3.R | 60 - R/tam.R | 6 R/tam.ctt.R | 46 - R/tam.ctt2.R | 8 R/tam.ctt3.R | 8 R/tam.fa.R | 70 - R/tam.fit.R | 104 +- R/tam.jml.R | 42 R/tam.jml.fit.R | 38 R/tam.latreg.R | 95 +- R/tam.linking.R | 32 R/tam.mml.2pl.R | 175 ++- R/tam.mml.3pl.R | 276 +++--- R/tam.mml.R | 167 +-- R/tam.mml.mfr.R | 157 +-- R/tam.mml.wle.R | 16 R/tam.mml.wle2.R | 51 - R/tam.modelfit.IRT.R | 8 R/tam.modelfit.R | 92 +- R/tam.modelfit.args.R | 12 R/tam.parameterfix.defaults.R | 10 R/tam.personfit.R | 4 R/tam.pv.R | 68 - R/tam.pv.mcmc.R | 36 R/tam.q3.aux.R | 46 - R/tam.se.R | 20 R/tam.wle.R | 8 R/tam_01_pattern.R | 6 R/tam_AXsi_compute.R | 4 R/tam_AXsi_fit.R | 6 R/tam_Rhat_3splits.R | 6 R/tam_accelerate_parameters.R | 14 R/tam_acceleration_inits.R | 4 R/tam_acceleration_inits_create_list.R | 14 R/tam_aggregate.R | 4 R/tam_args_CALL_search.R | 4 R/tam_args_replace_value.R | 4 R/tam_assign_list_elements.R | 4 R/tam_bayesian_bootstrap.R | 4 R/tam_calc_counts.R | 28 R/tam_calc_exp.R | 8 R/tam_calc_posterior.R | 24 R/tam_calc_prob_helper_subtract_max.R | 6 R/tam_compute_disp_progress.R | 8 R/tam_cor_wt.R | 8 R/tam_cov_wt.R | 8 R/tam_ctt_wrapper.R | 62 - R/tam_deviance_history_init.R | 6 R/tam_difference_quotient.R | 6 R/tam_dmvnorm.R | 10 R/tam_dtnorm.R | 8 R/tam_evaluate_prior.R | 22 R/tam_exp_overflow.R | 4 R/tam_fa_reliability_measures.R | 12 R/tam_fa_reliability_nonlinearSEM.R | 26 R/tam_find_root.R | 8 R/tam_irf_3pl.R | 8 R/tam_itempartable.R | 30 R/tam_jml_version1.R | 136 +-- R/tam_jml_version1_calc_xsi.R | 28 R/tam_jml_version2.R | 170 +-- R/tam_jml_version2_calc_xsi.R | 48 - R/tam_jml_wle.R | 42 R/tam_latent_regression_standardized_solution.R | 22 R/tam_latreg_ic.R | 12 R/tam_latreg_se_quick.R |only R/tam_latreg_se_quick_likelihood.R |only R/tam_lavaanify.R | 64 - R/tam_linking_2studies.R | 10 R/tam_linking_2studies_create_M_SD.R | 12 R/tam_linking_2studies_create_M_SD_rownames.R | 6 R/tam_linking_extract_parameters.R | 4 R/tam_linking_output_summary.R | 10 R/tam_linking_parameters_select_common_items.R | 10 R/tam_linking_transform_item_parameters.R | 6 R/tam_matrix2.R | 4 R/tam_max_abs.R |only R/tam_max_abs_list.R |only R/tam_max_categories.R |only R/tam_mml_2pl_mstep_item_slopes_suffstat_R.R | 16 R/tam_mml_2pl_mstep_slope.R | 92 +- R/tam_mml_2pl_sufficient_statistics_item_slope.R | 6 R/tam_mml_3pl_calc_exp.R | 18 R/tam_mml_3pl_calc_ll.R | 4 R/tam_mml_3pl_calc_ll_est_guessing.R | 4 R/tam_mml_3pl_calc_prob.R | 32 R/tam_mml_3pl_calc_total_ll.R | 14 R/tam_mml_3pl_computeB.R | 6 R/tam_mml_3pl_compute_Fdes.R | 16 R/tam_mml_3pl_create_E.R | 38 R/tam_mml_3pl_create_notA.R | 10 R/tam_mml_3pl_deviance.R | 10 R/tam_mml_3pl_distributionmoments.R | 18 R/tam_mml_3pl_expected_counts.R | 12 R/tam_mml_3pl_ic.R | 24 R/tam_mml_3pl_inits_group.R | 6 R/tam_mml_3pl_itempartable.R | 26 R/tam_mml_3pl_mstep_item_guessing.R | 78 - R/tam_mml_3pl_mstep_item_intercepts.R | 62 - R/tam_mml_3pl_mstep_item_slopes.R | 86 - R/tam_mml_3pl_mstep_item_slopes_gammaslope_center.R | 8 R/tam_mml_3pl_mstep_regression.R | 64 - R/tam_mml_3pl_skillspace.R | 32 R/tam_mml_3pl_stud_prior_discrete.R | 10 R/tam_mml_3pl_variance_fixed.R | 20 R/tam_mml_3pl_vec_add_increment.R | 4 R/tam_mml_calc_prob.R | 5 R/tam_mml_calc_prob_R.R | 24 R/tam_mml_compute_AXsi.R | 6 R/tam_mml_compute_deviance.R | 10 R/tam_mml_control_list_define.R | 10 R/tam_mml_create_nodes.R | 24 R/tam_mml_create_nodes_multidim_nodes.R | 6 R/tam_mml_ic.R | 24 R/tam_mml_include_NA_AXsi.R |only R/tam_mml_inits_beta.R | 18 R/tam_mml_inits_groups.R | 6 R/tam_mml_inits_variance.R | 8 R/tam_mml_inits_xsi.R | 12 R/tam_mml_mfr_collect_xsi_parameters.R | 38 R/tam_mml_mfr_dataprep.R | 38 R/tam_mml_mfr_inits_beta.R | 24 R/tam_mml_mfr_inits_xsi.R | 16 R/tam_mml_mfr_proc_compute_maxKi.R | 10 R/tam_mml_mfr_proc_create_design_matrices.R | 21 R/tam_mml_mfr_proc_delete_missing_items.R | 26 R/tam_mml_mfr_proc_multiple_person_ids.R | 35 R/tam_mml_mfr_proc_response_indicators.R | 9 R/tam_mml_mfr_proc_xsi_setnull.R | 12 R/tam_mml_mstep_intercept.R | 24 R/tam_mml_mstep_intercept_optim.R | 18 R/tam_mml_mstep_intercept_quasi_newton_R.R | 10 R/tam_mml_mstep_regression.R | 58 - R/tam_mml_mstep_xsi.R | 40 R/tam_mml_person_EAP.R | 4 R/tam_mml_person_EAP_rel.R | 8 R/tam_mml_person_SD_EAP.R | 4 R/tam_mml_person_maxscore.R | 6 R/tam_mml_person_posterior.R | 20 R/tam_mml_proc_est_xsi_index.R | 4 R/tam_mml_proc_prior_list_xsi.R | 12 R/tam_mml_proc_response_indicators.R | 6 R/tam_mml_proc_unidim_simplify.R | 4 R/tam_mml_proc_xsi_parameter_index_A.R | 8 R/tam_mml_progress_em.R | 34 R/tam_mml_progress_em0.R | 4 R/tam_mml_progress_proc_nodes.R | 14 R/tam_mml_se_AXsi.R | 4 R/tam_mml_se_quick.R | 49 - R/tam_mml_se_quick_compute_log_likelihood.R | 4 R/tam_mml_se_quick_likelihood.R | 16 R/tam_mml_se_quick_modify_parameter_vec.R | 4 R/tam_mml_sufficient_statistics.R | 10 R/tam_mml_sufficient_statistics_R.R | 12 R/tam_mml_update_stochastic_nodes.R | 12 R/tam_mml_wle_check_identifiability.R | 12 R/tam_mml_wle_postproc.R | 58 - R/tam_mml_wle_proc_input_data.R | 2 R/tam_mml_wle_theta_inits.R | 14 R/tam_mml_wle_update_theta.R | 12 R/tam_osink.R | 4 R/tam_outer.R | 6 R/tam_packageinfo.R | 4 R/tam_print_call.R | 6 R/tam_print_computation_time.R | 6 R/tam_print_package_rsession.R | 6 R/tam_prior_eval_log_density_one_parameter.R | 4 R/tam_pv_draw_pv_nonparametric.R | 6 R/tam_pv_draw_pv_normal_approximation_1dim.R | 8 R/tam_pv_draw_pv_normal_approximation_multidim.R | 4 R/tam_pv_mcmc_calc_probs_irf_3pl.R | 14 R/tam_pv_mcmc_compute_marginal_likelihood.R | 6 R/tam_pv_mcmc_evaluate_likelihood.R | 6 R/tam_pv_mcmc_inits_MH_sampling_objects.R | 8 R/tam_pv_mcmc_inits_plausible_values_objects.R | 12 R/tam_pv_mcmc_inits_sampled_parameters_objects.R | 16 R/tam_pv_mcmc_inits_theta.R | 6 R/tam_pv_mcmc_likelihood.R | 6 R/tam_pv_mcmc_likelihood_R.R | 8 R/tam_pv_mcmc_parameter_samples.R | 10 R/tam_pv_mcmc_parameter_samples_correlation.R | 14 R/tam_pv_mcmc_parameter_samples_correlation_index.R | 8 R/tam_pv_mcmc_parameter_summary.R | 12 R/tam_pv_mcmc_person_inits_from_resp.R | 16 R/tam_pv_mcmc_postproc_ic.R | 4 R/tam_pv_mcmc_postproc_theta_posterior.R | 6 R/tam_pv_mcmc_prior_density.R | 14 R/tam_pv_mcmc_proc_input.R | 14 R/tam_pv_mcmc_proc_regressors.R | 4 R/tam_pv_mcmc_proposal_theta.R | 8 R/tam_pv_mcmc_pv_acf.R | 4 R/tam_pv_mcmc_refresh_theta.R | 18 R/tam_pv_mcmc_sample_beta_variance.R | 18 R/tam_pv_mcmc_sample_beta_variance_lm_beta.R | 12 R/tam_pv_mcmc_save_parameters.R | 8 R/tam_pv_mcmc_theta_MH_ratio_accept.R | 4 R/tam_pv_mcmc_update_plausible_values.R | 4 R/tam_pv_recommend_tam_pv_mcmc.R | 4 R/tam_pv_sampling_beta.R | 22 R/tam_pv_sampling_theta.R | 16 R/tam_pv_summary_covariance.R | 6 R/tam_rbind_twomatrices.R | 10 R/tam_remove_missings.R | 16 R/tam_round_data_frame.R | 4 R/tam_rowMaxs.R | 8 R/tam_rsessinfo.R | 6 R/tam_stud_prior.R | 30 R/tam_stud_prior_multiple_groups.R | 26 R/tam_summary_print_ic.R | 20 R/tam_summary_print_ic_description.R | 26 R/tam_summary_print_ic_one_ic.R | 10 R/tam_theta_sq.R | 8 R/tam_theta_sq1.R | 6 R/tam_thurstonian_threshold.R | 14 R/tam_trim_increment.R | 12 R/tam_vec2symmmatrix.R | 4 R/tam_weighted_stats_select.R | 4 R/tam_wle_print_WLErel.R | 34 R/tam_wle_print_general.R | 8 R/tamaan.3pl.lca.R | 38 R/tamaan.3pl.loclca.R | 50 - R/tamaan.3pl.mixture.R | 76 - R/tamaan.3pl.olca.R | 42 R/tamaan.3pl.trait.R | 38 R/tamaan.R | 60 - R/tamaan_3pl_lca_extract_lcaprobs.R | 20 R/tamaan_3pl_mixture_individual_class_probabilities.R | 4 R/tamaanify.R | 44 - R/tamaanify.create.A.R | 110 +- R/tamaanify.create.Q.R | 20 R/tamaanify.define.method.R | 14 R/tamaanify.grep.linequations.R | 30 R/tamaanify.modelconstraint.loadings.R | 85 - R/tamaanify.modelprior.R | 80 - R/tamaanify.proc.analysis.R | 20 R/tamaanify.proc.items.R | 52 - R/tamaanify.proc.itemtype.R | 34 R/tamaanify.proc.lavaanmodel.R | 12 R/tamaanify.proc.loadings.B.fixed.R | 24 R/tamaanify.proc.modelconstraint.R | 60 - R/tamaanify.tam.mml.3pl.deltadesign.R | 10 R/tamaanify.tam.mml.3pl.designMatrices.LCA.R | 34 R/tamaanify.tam.mml.3pl.designMatrices.LOCLCA.R | 76 - R/tamaanify.tam.mml.3pl.designMatrices.MIXTURE.R | 112 +- R/tamaanify.tam.mml.3pl.designMatrices.OLCA.R | 46 - R/tamaanify.tam.mml.3pl.designMatrices.R | 14 R/tamaanify.tam.mml.3pl.designMatrices.TRAIT.R | 26 R/tamaanify.variance.fixed.R | 12 R/tamaanify_tam_mml_3pl_create_delta_design.R | 10 R/tamcat.R | 6 R/tampv2datalist.R | 22 R/weighted_curtosis.R | 6 R/weighted_mean.R | 4 R/weighted_quantile.R | 20 R/weighted_quantile_type_selection.R | 10 R/weighted_sd.R | 4 R/weighted_skewness.R | 6 R/weighted_table.R | 8 R/weighted_var.R | 10 R/zzz.R | 8 inst/NEWS | 20 man/IRT.WrightMap.Rd | 104 +- man/IRT.factor.scores.tam.Rd | 6 man/IRT.informationCurves.Rd | 58 - man/IRT.itemfit.Rd | 6 man/IRT.linearCFA.Rd | 34 man/IRT.simulate.Rd | 66 - man/IRT.threshold.Rd | 36 man/IRT.truescore.Rd | 32 man/IRTLikelihood.cfa.Rd | 28 man/IRTLikelihood.ctt.Rd | 20 man/TAM-utilities.Rd | 15 man/WLErel.Rd | 10 man/anova.tam.Rd | 12 man/cfa.extract.itempars.Rd | 34 man/data.cqc.Rd | 86 - man/data.fims.Aus.Jpn.Rd | 8 man/data.geiser.Rd | 68 - man/data.janssen.Rd | 18 man/data.numeracy.Rd | 10 man/data.sim.mfr.Rd | 68 - man/data.sim.rasch.Rd | 32 man/data.timssAusTwn.Rd | 6 man/designMatrices.Rd | 24 man/doparse.Rd | 60 - man/lavaanify.IRT.Rd | 92 +- man/msq.itemfit.Rd | 52 - man/plot.tam.Rd | 28 man/plotDevianceTAM.Rd | 6 man/tam.ctt.Rd | 40 man/tam.fa.Rd | 16 man/tam.fit.Rd | 36 man/tam.jml.Rd | 70 - man/tam.latreg.Rd | 78 - man/tam.linking.Rd | 56 - man/tam.mml.3pl.Rd | 476 +++++----- man/tam.mml.Rd | 704 ++++++++-------- man/tam.modelfit.Rd | 32 man/tam.pv.Rd | 184 ++-- man/tam.se.Rd | 23 man/tam.threshold.Rd | 24 man/tam.wle.Rd | 38 man/tam_irf_3pl.Rd | 6 man/tamaan.Rd | 156 +-- man/tamaanify.Rd | 60 - man/tampv2datalist.Rd | 6 man/weighted_Stats.Rd | 52 - src/RcppExports.cpp | 10 src/init.c | 2 src/tam_rcpp_calc_exp.cpp | 58 - src/tam_rcpp_calc_prob.cpp | 22 src/tam_rcpp_calc_suff_stat.cpp | 8 src/tam_rcpp_ctt.cpp | 256 ++--- src/tam_rcpp_fit_simul.cpp | 50 - src/tam_rcpp_helper.cpp | 22 src/tam_rcpp_irt_likelihood_cfa.cpp | 28 src/tam_rcpp_mml_2pl.cpp | 8 src/tam_rcpp_mml_3pl.cpp | 198 ++-- src/tam_rcpp_mml_mfr.cpp | 42 src/tam_rcpp_modelfit.cpp | 126 +- src/tam_rcpp_msq_itemfit.cpp | 112 +- src/tam_rcpp_prior_normal_density.cpp | 46 - src/tam_rcpp_pv_mcmc.cpp | 22 src/tam_rcpp_pv_multivariate_normal_approximation.cpp | 18 src/tam_rcpp_rowcumsums.cpp | 12 src/tam_rcpp_wle.cpp | 28 398 files changed, 7295 insertions(+), 7259 deletions(-)
Title: Supervised and Unsupervised Self-Organising Maps
Description: Functions to train self-organising maps (SOMs). Also interrogation of the maps and prediction using trained maps are supported. The name of the package refers to Teuvo Kohonen, the inventor of the SOM.
Author: Ron Wehrens and Johannes Kruisselbrink
Maintainer: Ron Wehrens <ron.wehrens@gmail.com>
Diff between kohonen versions 3.0.4 dated 2017-08-28 and 3.0.5 dated 2018-05-25
DESCRIPTION | 6 +-- MD5 | 23 ++++++------ NEWS | 16 +++++++- R/check.data.R | 35 +++++++------------ R/map.R | 27 ++++++++------ R/predict.kohonen.R | 71 ++++++++++++++++++++++++++++----------- R/supersom.R | 45 ++++++++++++------------ build/partial.rdb |binary inst/doc/kohonen-manual_2007.pdf |binary inst/doc/kohonen-manual_2018.pdf |only man/map.kohonen.Rd | 5 +- man/predict.kohonen.Rd | 19 ++++------ man/supersom.Rd | 8 ++-- 13 files changed, 147 insertions(+), 108 deletions(-)
Title: 'AWS S3' Client Package
Description: A simple client package for the Amazon Web Services ('AWS') Simple
Storage Service ('S3') 'REST' 'API' <https://aws.amazon.com/s3/>.
Author: Thomas J. Leeper [aut, cre] (<https://orcid.org/0000-0003-4097-6326>),
Boettiger Carl [ctb],
Andrew Martin [ctb],
Mark Thompson [ctb],
Tyler Hunt [ctb],
Steven Akins [ctb],
Bao Nguyen [ctb],
Thierry Onkelinx [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between aws.s3 versions 0.3.11 dated 2018-04-11 and 0.3.12 dated 2018-05-25
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/s3HTTP.R | 7 ++++--- R/s3read_using.R | 2 +- R/s3sync.R | 2 +- README.md | 28 +++++----------------------- tests/testthat/test-authenticated-object.R | 4 ++-- 8 files changed, 28 insertions(+), 41 deletions(-)
Title: Accesses Google Maps APIs to Retrieve Data and Plot Maps
Description: Provides a mechanism to plot a 'Google Map' from 'R' and overlay
it with shapes and markers. Also provides access to 'Google Maps' APIs,
including places, directions, roads, distances, geocoding, elevation and
timezone.
Author: David Cooley [aut, cre],
Paulo Barcelos [ctb] (Author of c++ decode_pl),
Rstudio [ctb] (Functions written for the Leaflet pacakge)
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between googleway versions 2.6 dated 2018-04-29 and 2.7.0 dated 2018-05-25
DESCRIPTION | 8 - MD5 | 80 +++++++++---------- NAMESPACE | 1 R/google_directions.R | 11 +- R/google_distance.R | 12 +- R/google_elevation.R | 6 - R/google_geocode.R | 23 ++++- R/google_map_layer_kml.R | 17 ++-- R/google_map_layer_marker.R | 8 + R/google_map_layer_overlay.R | 28 +++++- R/google_map_shape_constructors.R | 9 +- R/google_place_details.R | 2 R/google_places.R | 2 R/google_reverse_geocode.R | 4 R/google_roads.R | 2 R/google_timezone.R | 4 R/googleway-package.R | 32 +++---- build/vignette.rds |binary inst/doc/googleway-vignette.html | 4 inst/htmlwidgets/google_map.js | 2 inst/htmlwidgets/lib/circles/circles.js | 4 inst/htmlwidgets/lib/kml/kml.js | 11 +- inst/htmlwidgets/lib/map/map_events.js | 125 ++++++++++++++---------------- inst/htmlwidgets/lib/markers/markers.js | 71 ++++++++++------- inst/htmlwidgets/lib/overlay/overlay.js | 9 +- inst/htmlwidgets/lib/polygons/polygons.js | 4 man/add_kml.Rd | 14 ++- man/add_markers.Rd | 5 - man/clear.Rd | 8 + man/google_directions.Rd | 23 ++++- man/google_distance.Rd | 24 ++++- man/google_elevation.Rd | 18 +++- man/google_geocode.Rd | 20 ++++ man/google_place_details.Rd | 15 +++ man/google_places.Rd | 15 +++ man/google_reverse_geocode.Rd | 15 +++ man/google_snapToRoads.Rd | 15 +++ man/google_timezone.Rd | 15 +++ tests/manual_tests.R | 69 ++++++++++++++++ tests/testthat/test-google_map_layer_sf.R | 122 +++++++++++++++-------------- tests/testthat/test-google_roads.R | 14 +-- 41 files changed, 584 insertions(+), 287 deletions(-)
Title: Encoding Coordinates into 'Google' Polylines
Description: Encodes simple feature ('sf') objects and coordinates, and decodes polylines
using the 'Google' polyline encoding algorithm (<https://developers.google.com/maps/documentation/utilities/polylinealgorithm>).
Author: David Cooley [aut, cre],
Paulo Barcelos [ctb] (Author of c++ decode_polyline)
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between googlePolylines versions 0.6.0 dated 2018-04-26 and 0.6.1 dated 2018-05-25
DESCRIPTION | 8 ++--- MD5 | 10 +++--- README.md | 6 ++- build/vignette.rds |binary inst/doc/sfencode.html | 68 ++++++++++++++++++++++--------------------- tests/testthat/test-Encode.R | 11 ------ 6 files changed, 48 insertions(+), 55 deletions(-)
More information about googlePolylines at CRAN
Permanent link
Title: Moment-Based Estimation for Hierarchical Models
Description: Fast moment-based hierarchical model fitting. Implements
methods from the papers
"Fast Moment-Based Estimation for Hierarchical Models," by Perry (2017)
and
"Fitting a Deeply Nested Hierarchical Model to a Large Book Review
Dataset Using a Moment-Based Estimator," by Zhang, Schmaus, and Perry
(2018).
Author: Patrick O. Perry [aut, cre],
Timothy Sweetser [ctb],
Kyle Schmaus [ctb],
Ningshan Zhang [aut, ctb]
Maintainer: Patrick O. Perry <patperry@gmail.com>
Diff between mbest versions 0.5 dated 2016-03-08 and 0.6 dated 2018-05-25
mbest-0.5/mbest/README.md |only mbest-0.5/mbest/tests/test-all.R |only mbest-0.6/mbest/DESCRIPTION | 32 - mbest-0.6/mbest/MD5 | 42 - mbest-0.6/mbest/NAMESPACE | 35 + mbest-0.6/mbest/R/ebayes.est.R | 141 ++++ mbest-0.6/mbest/R/linalg.R | 12 mbest-0.6/mbest/R/mhglm.R | 538 ++++++++++++++++- mbest-0.6/mbest/R/mhglm.fit.R | 383 ++++++++++-- mbest-0.6/mbest/R/mhglm_sim.R |only mbest-0.6/mbest/R/moment.est.R | 536 ++++++++++------ mbest-0.6/mbest/R/unpivotRp.R |only mbest-0.6/mbest/build |only mbest-0.6/mbest/man/effects.Rd | 15 mbest-0.6/mbest/man/firthglm.fit.Rd | 2 mbest-0.6/mbest/man/mbest-package.Rd | 27 mbest-0.6/mbest/man/mhglm.Rd | 91 ++ mbest-0.6/mbest/man/mhglm.control.Rd | 25 mbest-0.6/mbest/man/mhglm_sim.Rd |only mbest-0.6/mbest/man/model.matrix.mhglm.Rd | 4 mbest-0.6/mbest/man/predict.Rd | 5 mbest-0.6/mbest/src/init.c | 1 mbest-0.6/mbest/tests/testthat.R |only mbest-0.6/mbest/tests/testthat/helper-parallel.R |only mbest-0.6/mbest/tests/testthat/test-mhglm.R | 165 ++--- mbest-0.6/mbest/tests/testthat/test-mhglm.multilevel.R |only mbest-0.6/mbest/tests/testthat/test-predict.R |only 27 files changed, 1624 insertions(+), 430 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regressions model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 0.2.1 dated 2018-05-01 and 0.2.2 dated 2018-05-25
greybox-0.2.1/greybox/R/combiner.R |only greybox-0.2.1/greybox/man/AICc.Rd |only greybox-0.2.1/greybox/man/combiner.Rd |only greybox-0.2.2/greybox/DESCRIPTION | 27 +- greybox-0.2.2/greybox/MD5 | 49 ++--- greybox-0.2.2/greybox/NAMESPACE | 13 + greybox-0.2.2/greybox/NEWS | 25 ++ greybox-0.2.2/greybox/R/determination.R |only greybox-0.2.2/greybox/R/greybox-package.R | 17 + greybox-0.2.2/greybox/R/lmCombine.R |only greybox-0.2.2/greybox/R/methods.R | 213 ++++++++++++++++++----- greybox-0.2.2/greybox/R/ro.R | 185 +++++++++++++------ greybox-0.2.2/greybox/R/stepwise.R | 13 - greybox-0.2.2/greybox/README.md | 30 ++- greybox-0.2.2/greybox/build/partial.rdb |only greybox-0.2.2/greybox/inst/doc/greybox.R | 16 - greybox-0.2.2/greybox/inst/doc/greybox.Rmd | 22 +- greybox-0.2.2/greybox/inst/doc/greybox.html | 30 +-- greybox-0.2.2/greybox/inst/doc/ro.R | 16 + greybox-0.2.2/greybox/inst/doc/ro.Rmd | 41 +++- greybox-0.2.2/greybox/inst/doc/ro.html | 52 +++-- greybox-0.2.2/greybox/man/InformationCriteria.Rd |only greybox-0.2.2/greybox/man/determination.Rd |only greybox-0.2.2/greybox/man/greybox.Rd | 17 + greybox-0.2.2/greybox/man/lmCombine.Rd |only greybox-0.2.2/greybox/man/reexports.Rd | 6 greybox-0.2.2/greybox/man/ro.Rd | 34 +++ greybox-0.2.2/greybox/man/stepwise.Rd | 10 - greybox-0.2.2/greybox/vignettes/greybox.Rmd | 22 +- greybox-0.2.2/greybox/vignettes/ro.Rmd | 41 +++- 30 files changed, 615 insertions(+), 264 deletions(-)
Title: Fitting Generalized Linear Models
Description: Fits generalized linear models using the same model specification as glm in the stats package, but with a modified default fitting method that provides greater stability for models that may fail to converge using glm.
Author: Ian Marschner [aut] (using code from glm and glm.fit in the stats
package),
Mark W. Donoghoe [cre, ctb]
Maintainer: Mark W. Donoghoe <markdonoghoe@gmail.com>
Diff between glm2 versions 1.1.3 dated 2017-10-24 and 1.2 dated 2018-05-25
DESCRIPTION | 22 ++++++++++++---------- MD5 | 12 ++++++------ R/glm.fit2.R | 14 +++++++++----- R/glm2.R | 5 +++-- man/glm.fit2.Rd | 6 +++++- man/glm2-package.Rd | 5 ++--- man/glm2.Rd | 22 ++++++++++++++-------- 7 files changed, 51 insertions(+), 35 deletions(-)
Title: Time-Weighted Dynamic Time Warping for Satellite Image Time
Series Analysis
Description: Provides an implementation of the Time-Weighted Dynamic Time
Warping (TWDTW) method for land cover mapping using satellite image time series.
TWDTW is based on the Dynamic Time Warping technique and has achieved high
accuracy for land cover classification using satellite data. The method is
based on comparing unclassified satellite image time series with a set of known
temporal patterns (e.g. phenological cycles associated with the vegetation).
Using 'dtwSat' the user can build temporal patterns for land cover types, apply
the TWDTW analysis for satellite datasets, visualize the results of the time
series analysis, produce land cover maps, create temporal plots for land cover
change, and compute accuracy assessment metrics.
Author: Victor Maus [aut, cre] (<https://orcid.org/0000-0002-7385-4723>),
Marius Appel [ctb],
Toni Giorgino [ctb]
Maintainer: Victor Maus <vwmaus1@gmail.com>
Diff between dtwSat versions 0.2.3 dated 2017-05-16 and 0.2.4 dated 2018-05-25
DESCRIPTION | 27 - MD5 | 88 ++- NAMESPACE | 6 NEWS.md | 22 R/class-twdtwRaster.R | 54 +- R/data.R | 8 R/methods.R | 13 R/plotMapSamples.R | 6 R/twdtwApply.R | 228 +++++----- R/twdtwApplyParallel.R |only R/twdtwAssess.R | 116 ----- R/twdtwClassify.R | 141 +++--- R/zzz.R | 17 build/vignette.rds |binary inst/doc/applying_twdtw.Rmd | 8 inst/doc/applying_twdtw.pdf |binary inst/doc/images_array.pdf |binary inst/doc/images_ts.pdf |binary man/MOD13Q1.MT.yearly.patterns.Rd | 2 man/MOD13Q1.patterns.list.Rd | 2 man/MOD13Q1.ts.Rd | 2 man/MOD13Q1.ts.list.Rd | 2 man/plotMapSamples.Rd | 85 +++ man/twdtwApply.Rd | 116 +++-- man/twdtwApplyParallel.Rd |only man/twdtwAssess.Rd | 201 +++++--- man/twdtwClassify.Rd | 186 ++++++-- man/twdtwRaster-class.Rd | 5 tests |only vignettes/applying_twdtw.Rmd | 8 vignettes/applying_twdtw_files/figure-latex/alignments-all-patterns-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/example-timeseries-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/logist-time-weight-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/plot-accuracy-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/plot-area-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/plot-area-and-uncertainty-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/plot-change-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/plot-dissmilarity-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/plot-dissmilarity2008-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/plot-map-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/plot-map-incorrect-samples-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/temporal-patterns-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/temporal-patterns-soy-cot-mai-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/time-series-classification-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/twdtw-example-1.pdf |binary vignettes/applying_twdtw_files/figure-latex/twdtw-matches-1.pdf |binary 46 files changed, 804 insertions(+), 539 deletions(-)
Title: Smoothing Splines for Large Samples
Description: Fits smoothing spline regression models using scalable algorithms designed for large samples. Seven marginal spline types are supported: linear, cubic, different cubic, cubic periodic, cubic thin-plate, ordinal, and nominal. Random effects and parametric effects are also supported. Response can be Gaussian or non-Gaussian: Binomial, Poisson, Gamma, Inverse Gaussian, or Negative Binomial.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between bigsplines versions 1.1-0 dated 2017-02-03 and 1.1-1 dated 2018-05-25
ChangeLog | 18 +++++++++ DESCRIPTION | 8 ++-- MD5 | 60 ++++++++++++++++--------------- NAMESPACE | 3 + R/imagebar.R | 14 ++++++- R/remlri.R | 8 ++-- R/ssBasis.R | 86 ++++++++++++++++++++++++++++++++++----------- R/sspdpm.R | 20 +++++----- R/summary.bigssa.R | 18 ++++++++- R/summary.bigssg.R | 18 ++++++++- R/summary.bigssp.R | 18 ++++++++- build |only man/bigsplines-internal.Rd | 17 ++++++++ man/bigsplines-package.Rd | 25 ++++++------- man/bigssa.Rd | 2 + man/bigssg.Rd | 2 + man/bigssp.Rd | 2 + man/bigtps.Rd | 2 + man/imagebar.Rd | 4 +- man/makessa.Rd | 2 + man/makessg.Rd | 2 + man/makessp.Rd | 2 + man/ordspline.Rd | 2 + man/predict.bigspline.Rd | 2 + man/predict.bigssa.Rd | 2 + man/predict.bigssg.Rd | 2 + man/predict.bigssp.Rd | 2 + man/predict.bigtps.Rd | 2 + man/predict.ordspline.Rd | 2 + man/ssBasis.Rd | 9 ++++ man/summary.Rd | 14 ++++--- src/bigsplines_init.c |only 32 files changed, 273 insertions(+), 95 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-20 0.1.1
2017-07-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-19 1.1
2015-11-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-18 6.2.1
2017-02-28 6.2.0
2016-05-26 6.0.1
2016-05-25 6.0
2015-05-15 5.5
2013-05-23 5.3
2013-05-02 5.2
2013-03-18 5.0.2
2013-03-08 5.0.1
2013-02-06 5.0
2012-03-16 4.1
2012-01-27 4.0
2010-05-26 3.5
2010-01-10 3.0.2
2009-05-27 3.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-23 1.3-10
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-03 3.2
2011-02-15 3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-31 0.9-6
2014-09-11 0.9-5
2014-07-27 0.9-4.1
2013-03-12 0.9-4
2010-10-20 0.9-2
2010-08-07 0.9-0
2010-06-22 0.1-6
2010-06-04 0.1-4
2010-05-11 0.1-2
2010-05-07 0.1-0
2010-04-04 0.0-7
2010-03-07 0.0-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-27 1.8-0
2013-05-16 1.7-6
2013-02-23 1.7-4
2013-01-09 1.7-3
2012-09-17 1.7-2
2011-12-21 1.7-0
2011-08-30 1.6-8
2011-08-30 1.6-9
2011-05-18 1.6-7
2011-05-02 1.6-6
2011-02-08 1.6-5
2010-08-31 1.6-4
2010-08-08 1.6-2
2010-06-22 1.6-0
2010-06-11 1.5-8
2010-05-30 1.5-6
2010-05-11 1.5-4
2010-05-07 1.5-2
2010-04-04 1.5-1
2009-09-03 1.4-4
2009-07-23 1.4-3
2009-01-29 1.4-2
2008-11-27 1.4-1
2008-08-22 1.4-0
2008-05-07 1.3-9
2008-04-17 1.3-7
2008-02-17 1.3-5
2007-11-07 1.3-1
2007-09-04 1.2-8
2007-08-07 1.2-6
2007-07-10 1.2-4
2007-03-21 1.1-8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-13 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-29 1.4.11
2018-02-13 1.4.9
2018-01-16 1.4.8
2018-01-08 1.4.7
2017-08-30 1.4.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-23 1.1.1
2012-06-28 1.0
Title: Recurrent Event Regression
Description: A collection of regression models for recurrent event process and failure time.
Available methods include these from Xu et al. (2017) <doi:10.1080/01621459.2016.1173557>,
Lin et al. (2000) <doi:10.1111/1467-9868.00259>,
Wang et al. (2001) <doi:10.1198/016214501753209031>,
Ghosh and Lin (2003) <doi:10.1111/j.0006-341X.2003.00102.x>, and
Huang and Wang (2004) <doi:10.1198/016214504000001033>.
Author: Sy Han (Steven) Chiou
Maintainer: Sy Han (Steven) Chiou <schiou@utdallas.edu>
Diff between reReg versions 1.1-2 dated 2018-04-17 and 1.1-3 dated 2018-05-25
ChangeLog | 6 + DESCRIPTION | 10 +- MD5 | 28 +++--- NAMESPACE | 9 +- R/plot.R | 218 ++++++++++++++++++--------------------------------- R/reSurv.R | 64 ++++++++------ R/summary.R | 4 man/plot.reReg.Rd | 2 man/plot.reSurv.Rd | 29 +++--- man/plotEvents.Rd | 38 ++++---- man/plotHaz.Rd | 2 man/plotRate.Rd | 2 man/reReg-package.Rd | 4 man/reReg.Rd | 6 - man/reSurv.Rd | 14 ++- 15 files changed, 203 insertions(+), 233 deletions(-)
Title: Integrating Phylogenetics and Climatic Niche Modeling
Description: Implements some methods in phyloclimatic modeling:
estimation of ancestral climatic niches, age-range-correlation,
niche equivalency test and background-similarity test.
Author: Christoph Heibl, Clement Calenge (\code{import.ascii})
Maintainer: Christoph Heibl <christoph.heibl@gmx.net>
Diff between phyloclim versions 0.9-4 dated 2013-07-13 and 0.9.5 dated 2018-05-25
phyloclim-0.9-4/phyloclim/debug |only phyloclim-0.9.5/phyloclim/ChangeLog | 7 - phyloclim-0.9.5/phyloclim/DESCRIPTION | 15 +- phyloclim-0.9.5/phyloclim/MD5 | 56 +++------ phyloclim-0.9.5/phyloclim/NAMESPACE | 49 ++++++-- phyloclim-0.9.5/phyloclim/R/age.range.correlation.R | 12 +- phyloclim-0.9.5/phyloclim/R/anc.clim.R | 10 + phyloclim-0.9.5/phyloclim/R/bg.similarity.test.R | 10 + phyloclim-0.9.5/phyloclim/R/nbConnectingNodes.R | 5 phyloclim-0.9.5/phyloclim/R/niche.equivalency.test.R | 9 + phyloclim-0.9.5/phyloclim/R/niche.overlap.R | 8 + phyloclim-0.9.5/phyloclim/R/noi.R | 5 phyloclim-0.9.5/phyloclim/R/plot.ntest.R | 6 + phyloclim-0.9.5/phyloclim/R/plotAncClim.R | 111 ++++++++++++++++-- phyloclim-0.9.5/phyloclim/R/plotPNO.R | 10 + phyloclim-0.9.5/phyloclim/R/pno.R | 6 + phyloclim-0.9.5/phyloclim/data/PNO.rda |binary phyloclim-0.9.5/phyloclim/data/equ.rda |binary phyloclim-0.9.5/phyloclim/data/sim.rda |binary phyloclim-0.9.5/phyloclim/data/sites.rda |binary phyloclim-0.9.5/phyloclim/data/tree.rda |binary phyloclim-0.9.5/phyloclim/man/phyloclim-package.Rd | 6 - phyloclim-0.9.5/phyloclim/man/plotAncClim.Rd | 113 ++++++++++--------- 23 files changed, 310 insertions(+), 128 deletions(-)
Title: Lookup Tables to Generate Poverty Likelihoods and Rates using
the Poverty Probability Index (PPI)
Description: The Poverty Probability Index (PPI) is a poverty measurement tool
for organizations and businesses with a mission to serve the poor. The PPI
is statistically-sound, yet simple to use: the answers to 10 questions about
a household’s characteristics and asset ownership are scored to compute the
likelihood that the household is living below the poverty line – or above by
only a narrow margin. This package contains country-specific lookup data tables
used as reference to determine the poverty likelihood of a household based
on their score from the country-specific PPI questionnaire. These lookup
tables have been extracted from documentation of the PPI found at <https://www.povertyindex.org>
and managed by Innovations for Poverty Action <https://www.poverty-action.org>.
Author: Ernest Guevarra [aut, cre] (<https://orcid.org/0000-0002-4887-4415>)
Maintainer: Ernest Guevarra <ernestgmd@gmail.com>
Diff between ppitables versions 0.1.2 dated 2018-03-05 and 0.2.0 dated 2018-05-25
ppitables-0.1.2/ppitables/data/ppiCOL2018_a.rda |only ppitables-0.1.2/ppitables/man/ppiCOL2018_a.Rd |only ppitables-0.2.0/ppitables/DESCRIPTION | 8 ppitables-0.2.0/ppitables/MD5 | 63 + ppitables-0.2.0/ppitables/NAMESPACE | 3 ppitables-0.2.0/ppitables/NEWS.md | 30 ppitables-0.2.0/ppitables/R/data.R | 614 +++++++++++++------ ppitables-0.2.0/ppitables/R/find_table.R |only ppitables-0.2.0/ppitables/R/get_table.R |only ppitables-0.2.0/ppitables/R/ppitables.R |only ppitables-0.2.0/ppitables/R/sysdata.rda |only ppitables-0.2.0/ppitables/README.md | 700 ++++++++++++++-------- ppitables-0.2.0/ppitables/data/ppiBFA2011.rda |only ppitables-0.2.0/ppitables/data/ppiBFA2014.rda |only ppitables-0.2.0/ppitables/data/ppiCIV2018.rda |only ppitables-0.2.0/ppitables/data/ppiCOL2012.rda |only ppitables-0.2.0/ppitables/data/ppiCOL2012_a.rda |only ppitables-0.2.0/ppitables/data/ppiCOL2018.rda |binary ppitables-0.2.0/ppitables/data/ppiPER2012.rda |binary ppitables-0.2.0/ppitables/data/ppiPER2018.rda |only ppitables-0.2.0/ppitables/data/ppiPHL2018.rda |only ppitables-0.2.0/ppitables/data/ppiTGO2018.rda |only ppitables-0.2.0/ppitables/data/ppiZMB2013_cso.rda |only ppitables-0.2.0/ppitables/data/ppiZMB2013_got.rda |only ppitables-0.2.0/ppitables/data/ppiZMB2017.rda |binary ppitables-0.2.0/ppitables/data/ppiZMB2017_a.rda |only ppitables-0.2.0/ppitables/man/find_table.Rd |only ppitables-0.2.0/ppitables/man/get_table.Rd |only ppitables-0.2.0/ppitables/man/ppiBFA2011.Rd |only ppitables-0.2.0/ppitables/man/ppiBFA2014.Rd |only ppitables-0.2.0/ppitables/man/ppiCIV2018.Rd |only ppitables-0.2.0/ppitables/man/ppiCOL2012.Rd |only ppitables-0.2.0/ppitables/man/ppiCOL2012_a.Rd |only ppitables-0.2.0/ppitables/man/ppiCOL2018.Rd | 47 - ppitables-0.2.0/ppitables/man/ppiKHM2015.Rd | 6 ppitables-0.2.0/ppitables/man/ppiKHM2015_gov.Rd | 6 ppitables-0.2.0/ppitables/man/ppiKHM2015_wb.Rd | 6 ppitables-0.2.0/ppitables/man/ppiPAK2009.Rd | 10 ppitables-0.2.0/ppitables/man/ppiPER2018.Rd |only ppitables-0.2.0/ppitables/man/ppiPHL2018.Rd |only ppitables-0.2.0/ppitables/man/ppiTGO2018.Rd |only ppitables-0.2.0/ppitables/man/ppiZMB2013_cso.Rd |only ppitables-0.2.0/ppitables/man/ppiZMB2013_got.Rd |only ppitables-0.2.0/ppitables/man/ppiZMB2017.Rd | 34 - ppitables-0.2.0/ppitables/man/ppiZMB2017_a.Rd |only ppitables-0.2.0/ppitables/man/ppitables.Rd | 2 ppitables-0.2.0/ppitables/tests |only 47 files changed, 1017 insertions(+), 512 deletions(-)