Title: Nonlinear Time Series Models with Regime Switching
Description: Implements nonlinear autoregressive (AR) time series models. For univariate series, a non-parametric approach is available through additive nonlinear AR. Parametric modeling and testing for regime switching dynamics is available when the transition is either direct (TAR: threshold AR) or smooth (STAR: smooth transition AR, LSTAR). For multivariate series, one can estimate a range of TVAR or threshold cointegration TVECM models with two or three regimes. Tests can be conducted for TVAR as well as for TVECM (Hansen and Seo 2002 and Seo 2006).
Author: Antonio Fabio Di Narzo [aut],
Jose Luis Aznarte [ctb],
Matthieu Stigler [aut, cre]
Maintainer: Matthieu Stigler <Matthieu.Stigler@gmail.com>
Diff between tsDyn versions 0.9-46 dated 2018-01-22 and 0.9-48 dated 2018-06-03
DESCRIPTION | 8 MD5 | 44 +- R/TVARestim.R | 139 ++++----- R/TVECM.R | 15 - R/lineVar.R | 13 R/lstar.R | 42 +- R/nlVar-methods.R | 16 + build/vignette.rds |binary data/barry.rda |binary data/zeroyld.rda |binary inst/ChangeLog | 3 inst/doc/ThCointOverview.pdf |binary inst/doc/tsDyn.pdf |binary man/TVAR.Rd | 14 man/TVECM.Rd | 15 - man/lineVar.Rd | 13 tests/00SetarAndFriends.R | 56 --- tests/00SetarAndFriends.Rout.save | 547 ------------------------------------- tests/TVECM.sim.R | 2 tests/TVECM.sim.Rout.save | 11 tests/compare_tsDyn_vars.R | 12 tests/compare_tsDyn_vars.Rout.save | 30 +- tests/nlVar-methods.R |only tests/nlVar-methods.Rout.save |only 24 files changed, 202 insertions(+), 778 deletions(-)
Title: Database Query Interfaces
Description: An 'RODBC' wrapper, for exploratory work and rapid prototyping. Supports parameterised, multi-statement, 'SQL' scripts, with embedded 'R'.
Author: Mike Lee
Maintainer: Mike Lee <random.deviate@gmail.com>
Diff between SQRL versions 0.3.0 dated 2018-04-16 and 0.4.0 dated 2018-06-03
DESCRIPTION | 10 +- MD5 | 10 +- R/SQRL.R | 231 ++++++++++++++++++++++++++++++++++++----------------- build/partial.rdb |binary man/sqrlSources.Rd | 4 man/sqrlUsage.Rd | 4 6 files changed, 176 insertions(+), 83 deletions(-)
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation (ODE) models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
VODE and LSODA are in the public domain. The information is available
in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut],
Melissa Hallow [aut],
Wenping Wang [aut, cre],
Zufar Mulyukov [ctb],
Justin Wilkins [ctb],
Simon Frost [ctb],
Heng Li [ctb],
Yu Feng [ctb],
Alan Hindmarsh [ctb],
Linda Petzold [ctb],
Ernst Hairer [ctb],
Gerhard Wanner [ctb],
J Colinge [ctb],
Hadley Wickham [ctb],
G Grothendieck [ctb],
Robert Gentleman [ctb],
Ross Ihaka [ctb],
R core team [cph],
odepack authors [cph]
Maintainer: Wenping Wang <wwang8198@gmail.com>
Diff between RxODE versions 0.7.2-1 dated 2018-05-19 and 0.7.2-2 dated 2018-06-03
DESCRIPTION | 12 MD5 | 94 R/RcppExports.R | 8 R/RxODE-win-setup.R | 35 R/rxsolve.R | 3 build/vignette.rds |binary inst/doc/RxODE-covariates.R | 123 inst/doc/RxODE-covariates.Rmd | 46 inst/doc/RxODE-covariates.html | 1084 +-- inst/doc/RxODE-data-frame.R | 146 inst/doc/RxODE-data-frame.Rmd | 2 inst/doc/RxODE-data-frame.html | 2945 +++++--- inst/doc/RxODE-events.html | 267 inst/doc/RxODE-intro.R | 123 inst/doc/RxODE-intro.Rmd | 23 inst/doc/RxODE-intro.html | 1390 ++-- inst/doc/RxODE-mix-lin-ode.R | 160 inst/doc/RxODE-mix-lin-ode.Rmd | 2 inst/doc/RxODE-mix-lin-ode.html | 1582 ++-- inst/doc/RxODE-shiny.R | 14 inst/doc/RxODE-shiny.Rmd | 2 inst/doc/RxODE-shiny.html | 267 inst/doc/RxODE-sim-var.R | 418 - inst/doc/RxODE-sim-var.Rmd | 61 inst/doc/RxODE-sim-var.html |10686 +++++++++++++++++++++---------- inst/doc/RxODE-stiff.R | 70 inst/doc/RxODE-stiff.Rmd | 2 inst/doc/RxODE-stiff.html | 893 +- inst/doc/RxODE-syntax.R | 14 inst/doc/RxODE-syntax.Rmd | 2 inst/doc/RxODE-syntax.html | 468 - inst/doc/RxODE-transit-compartments.R | 118 inst/doc/RxODE-transit-compartments.Rmd | 14 inst/doc/RxODE-transit-compartments.html | 424 - src/Makevars.in | 2 src/RcppExports.cpp | 22 src/inner.cpp | 192 src/par_solve.c | 388 - src/rxData.cpp | 12 vignettes/RxODE-covariates.Rmd | 46 vignettes/RxODE-data-frame.Rmd | 2 vignettes/RxODE-intro.Rmd | 23 vignettes/RxODE-mix-lin-ode.Rmd | 2 vignettes/RxODE-shiny.Rmd | 2 vignettes/RxODE-sim-var.Rmd | 61 vignettes/RxODE-stiff.Rmd | 2 vignettes/RxODE-syntax.Rmd | 2 vignettes/RxODE-transit-compartments.Rmd | 14 48 files changed, 13663 insertions(+), 8605 deletions(-)
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ.4' library. The 'GDAL' and 'PROJ.4' libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both 'GDAL' raster and 'OGR' vector map data can be imported into R, and 'GDAL' raster data and 'OGR' vector data exported. Use is made of classes defined in the 'sp' package. Windows and Mac Intel OS X binaries (including 'GDAL', 'PROJ.4' and 'Expat') are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.2-20 dated 2018-05-07 and 1.3-1 dated 2018-06-03
ChangeLog | 102 ++ DESCRIPTION | 29 LICENSE.note |only MD5 | 30 build/vignette.rds |binary configure | 1519 +++++++++++++++++++++++++++++++++++++--- configure.ac | 180 +++- inst/ChangeLog | 102 ++ inst/SVN_VERSION | 2 inst/doc/OGR_shape_encoding.pdf |binary inst/include |only src/OGR_write.cpp | 10 src/gdal-bindings.cpp | 23 src/ogr_proj.cpp | 14 src/projectit.cpp | 19 tests/srs_rendering.R |only tests/srs_rendering.Rout.save |only tests/tests.Rout.save | 10 18 files changed, 1850 insertions(+), 190 deletions(-)
Title: Hierarchical Exponential-Family Random Graph Models
Description: Hierarchical exponential-family random graph models with local dependence.
Author: Michael Schweinberger <michael.schweinberger@rice.edu> [aut, cre], Mark S. Handcock <handcock@ucla.edu> [ctb], Pamela Luna <pamela.luna@rice.edu> [ctb]
Maintainer: Michael Schweinberger <michael.schweinberger@rice.edu>
Diff between hergm versions 3.2-0 dated 2018-04-18 and 3.2-1 dated 2018-06-03
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- inst/CITATION | 30 +++++++++++++++++------------- man/hergm.Rd | 4 +++- man/hergm.gof.Rd | 6 ++++++ man/hergm.mcmc.diagnostics.Rd | 6 ++++++ man/hergm.plot.Rd | 6 ++++++ man/hergm.postprocess.Rd | 4 +++- man/hergm.print.Rd | 6 ++++++ man/hergm.simulate.Rd | 6 ++++++ man/hergm.summary.Rd | 6 ++++++ man/hergm.terms.Rd | 2 ++ 12 files changed, 76 insertions(+), 30 deletions(-)
Title: Identification of Cardinal Dates in Ecological Time Series
Description: Identification of cardinal dates
(begin, time of maximum, end of mass developments)
in ecological time series using fitted Weibull functions.
Author: Susanne Rolinski [aut],
René Sachse [aut],
Thomas Petzoldt [aut, cre]
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between cardidates versions 0.4.7 dated 2015-09-06 and 0.4.8 dated 2018-06-03
DESCRIPTION | 17 +-- MD5 | 21 ++-- build/partial.rdb |only build/vignette.rds |binary data/carditest.txt.gz |binary inst/CITATION | 2 inst/doc/vignette.R | 228 +++++++++++++++++++++++----------------------- inst/doc/vignette.Rnw | 12 +- inst/doc/vignette.pdf |binary man/cardidates-package.Rd | 34 +++--- vignettes/cardidates.bib | 30 +++--- vignettes/vignette.Rnw | 12 +- 12 files changed, 176 insertions(+), 180 deletions(-)
Title: Tools for Aquatic Sciences
Description: Datasets, constants, conversion factors, and utilities for 'MArine', 'Riverine',
'Estuarine', 'LAcustrine' and 'Coastal' science.
The package contains among others: (1) chemical and
physical constants and datasets, e.g. atomic weights, gas
constants, the earths bathymetry; (2) conversion factors
(e.g. gram to mol to liter, barometric units,
temperature, salinity); (3) physical functions, e.g. to
estimate concentrations of conservative substances, gas
transfer and diffusion coefficients, the Coriolis force
and gravity; (4) thermophysical properties of the
seawater, as from the UNESCO polynomial or from the more
recent derivation based on a Gibbs function.
Author: Karline Soetaert [aut, cre],
Thomas Petzoldt [aut],
Filip Meysman [cph],
Lorenz Meire [cph]
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between marelac versions 2.1.6 dated 2016-09-19 and 2.1.9 dated 2018-06-03
DESCRIPTION | 28 - MD5 | 30 - NAMESPACE | 57 +- R/gas_schmidt.R | 3 build/partial.rdb |only build/vignette.rds |binary data/AtomicWeight.rda |binary data/Bathymetry.rda |binary data/Constants.rda |binary data/Oceans.rda |binary data/sw_sfac.rda |binary inst/doc/marelac.R | 1250 ++++++++++++++++++++++++------------------------ inst/doc/marelac.pdf |binary man/diffcoeff.Rd | 12 man/marelac.Rd | 288 +++++------ src/registerRoutines.c |only vignettes/vignettes.bib | 24 17 files changed, 847 insertions(+), 845 deletions(-)
Title: Gaussian Process Modeling of Multi-Response Datasets
Description: Provides a general and efficient tool for fitting a response surface to datasets via Gaussian processes. The dataset can have multiple responses and the fitted GP model can predict the gradient as well. The package is based on the work of Bostanabad, R., Kearney, T., Tao, S. Y., Apley, D. W. & Chen, W. (2018) Leveraging the nugget parameter for efficient Gaussian process modeling. International Journal for Numerical Methods in Engineering, 114, 501-516.
Author: Ramin Bostanabad
Maintainer: Ramin Bostanabad <bostanabad@u.northwestern.edu>
Diff between GPM versions 1.0 dated 2018-01-05 and 1.0.1 dated 2018-06-03
DESCRIPTION | 13 +++++++------ MD5 | 22 +++++++++++----------- R/CorrMat.R | 2 +- R/Draw.R | 12 ++++++------ R/Fit.R | 24 ++++++++++++------------ R/NLogL.R | 2 +- R/Predict.R | 2 +- man/CorrMat.Rd | 2 +- man/Draw.Rd | 4 ++-- man/Fit.Rd | 24 ++++++++++++------------ man/NLogL.Rd | 2 +- man/Predict.Rd | 2 +- 12 files changed, 56 insertions(+), 55 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes
of time series analysis and forecasting. The package includes Exponential Smoothing,
SARIMA, Complex Exponential Smoothing, Simple Moving Average, Vector Exponential
Smoothing in state space forms, several simulation functions and intermittent demand
state space models.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 2.4.3 dated 2018-05-06 and 2.4.4 dated 2018-06-03
DESCRIPTION | 20 +++--- MD5 | 151 +++++++++++++++++++++++++++++------------------- NAMESPACE | 10 +++ NEWS | 28 ++++++++ R/autoces.R | 8 +- R/autoges.R | 2 R/autossarima.R | 12 ++- R/ces.R | 14 ++-- R/es.R | 55 +++++++++-------- R/ges.R | 8 +- R/iss.R | 8 +- R/methods.R | 83 +++++++++++++++++++------- R/simces.R | 2 R/simsma.R | 2 R/sma.R | 12 +-- R/smooth-package.R | 24 ++++++- R/smoothCombine.R |only R/sowhat.R | 4 - R/ssarima.R | 16 ++--- R/ssfunctions.R | 127 +++++++++++++++++++++++++++------------- R/ves.R | 96 +++++++++++++++++++++++------- R/viss.R | 4 - R/vmethods.R | 37 ++++++++++- R/vssFunctions.R | 92 ++++++++++++++--------------- README.md | 41 +++++++++++-- build/partial.rdb |binary inst/doc/ces.html | 50 +++++++-------- inst/doc/es.Rmd | 3 inst/doc/es.html | 154 ++++++++++++++++++++++++------------------------- inst/doc/ges.html | 30 ++++----- inst/doc/simulate.html | 76 ++++++++++++------------ inst/doc/sma.html | 18 ++--- inst/doc/smooth.Rmd | 20 +++--- inst/doc/smooth.html | 16 +++-- inst/doc/ssarima.Rmd | 3 inst/doc/ssarima.html | 64 ++++++++++---------- inst/doc/ves.R | 2 inst/doc/ves.Rmd | 5 - inst/doc/ves.html | 26 ++++---- man/auto.ces.Rd | 12 ++- man/auto.ges.Rd | 22 +++---- man/auto.ssarima.Rd | 14 ++-- man/ces.Rd | 20 +++--- man/covar.Rd | 4 - man/es.Rd | 31 ++++++--- man/forecast.smooth.Rd | 2 man/ges.Rd | 30 +++++---- man/iss.Rd | 6 - man/pls.Rd | 2 man/sim.sma.Rd | 2 man/sma.Rd | 12 ++- man/smooth.Rd | 28 +++++++- man/smoothCombine.Rd |only man/sowhat.Rd | 2 man/ssarima.Rd | 20 ++++-- man/ves.Rd | 9 +- man/viss.Rd | 9 +- src/ssgeneralfun.cpp | 59 +++++++++++------- vignettes/Figs |only vignettes/es.Rmd | 3 vignettes/smooth.Rmd | 20 +++--- vignettes/ssarima.Rmd | 3 vignettes/ves.Rmd | 5 - 63 files changed, 1003 insertions(+), 635 deletions(-)
Title: Inverse-Regression Estimation of Radioactive Doses
Description: Radioactive doses estimation using individual chromosomal aberrations information. See Higueras M, Puig P, Ainsbury E, Rothkamm K. (2015). A new inverse regression model applied to radiation biodosimetry. Proceedings of the Royal Society A, 471.
Author: David Moriña (Centre for Research in Environmental Epidemiology, CREAL), Manuel Higueras (Universitat Autònoma de Barcelona and Public Health England) and Pedro Puig (Universitat Autònoma de Barcelona)
Maintainer: David Moriña Soler <david.morina@uab.cat>
Diff between radir versions 1.0.2 dated 2017-01-16 and 1.0.3 dated 2018-06-03
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- R/dose.distr.R | 7 +++---- man/radir-package.Rd | 4 ++-- 4 files changed, 14 insertions(+), 15 deletions(-)
Title: SIMulated Structural Equation Modeling
Description: Provides an easy framework for Monte Carlo simulation in structural equation modeling, which can be used for various purposes, such as such as model fit evaluation, power analysis, or missing data handling and planning.
Author: Terrence D. Jorgensen [aut, cre],
Sunthud Pornprasertmanit [aut],
Patrick Miller [aut],
Alexander Schoemann [aut],
Corbin Quick [ctb]
Maintainer: Terrence D. Jorgensen <TJorgensen314@gmail.com>
Diff between simsem versions 0.5-13 dated 2016-06-13 and 0.5-14 dated 2018-06-03
DESCRIPTION | 32 MD5 | 200 +- NAMESPACE | 86 R/AllClass.R | 78 R/analyze.R | 274 +- R/anova-methods.R | 288 +-- R/bind.R | 400 ++-- R/bindDist.R | 128 - R/clean.R | 4 R/combineSim.R | 188 - R/createData.R | 642 +++--- R/drawParam.R | 1860 +++++++++---------- R/exportData.R | 120 - R/find.R | 616 +++--- R/findPowerCoverage.R | 178 - R/generate.R | 1887 ++++++++----------- R/getCIWidth.R | 32 R/getCutoff.R | 300 +-- R/getCutoffNested.R | 96 - R/getCutoffNonNested.R | 224 +- R/getPowerCoverage.R | 470 ++-- R/getPowerFit.R | 304 +-- R/getPowerFitNested.R | 368 +-- R/getPowerFitNonNested.R | 346 +-- R/likRatioFit.R | 206 +- R/miss.R | 30 R/model.R | 3680 +++++++++++++++++++-------------------- R/mvrnorm.R | 412 ++-- R/openMx.R | 1670 ++++++++++++++--- R/pValue.R | 793 ++++---- R/pValueNested.R | 141 - R/pValueNonNested.R | 217 +- R/plotCIWidth.R | 56 R/plotCutoff.R | 452 ++-- R/plotCutoffNested.R | 84 R/plotCutoffNonNested.R | 170 - R/plotDist.R | 236 +- R/plotPowerCoverage.R | 336 +-- R/plotPowerFit.R | 1104 +++++------ R/plotPowerFitNested.R | 162 - R/plotPowerFitNonNested.R | 274 +- R/sim.R | 3198 +++++++++++++++++---------------- R/summary-methods.R | 553 ++--- R/summarySimResult.R | 1525 ++++++++-------- R/validate.R | 186 - R/zzz.R | 9 inst/tests/test_adjust-methods.R | 70 inst/tests/test_analyze.R | 356 +-- inst/tests/test_bind.R | 246 +- inst/tests/test_drawParam.R | 444 ++-- inst/tests/test_global.R | 1226 ++++++------ inst/tests/test_missing.R | 210 +- inst/tests/test_model.R | 324 +-- man/SimMissing-class.Rd | 11 man/SimResult-class.Rd | 26 man/SimSem-class.Rd | 118 - man/analyze.Rd | 138 - man/bindDist.Rd | 170 - man/coef.Rd | 102 - man/combineSim.Rd | 82 man/continuousCoverage.Rd | 158 - man/draw.Rd | 246 +- man/estmodel.Rd | 298 +-- man/exportData.Rd | 250 +- man/findCoverage.Rd | 124 - man/findPower.Rd | 124 - man/generate.Rd | 268 +- man/getCIwidth.Rd | 152 - man/getCoverage.Rd | 146 - man/getCutoffNested.Rd | 160 - man/getCutoffNonNested.Rd | 194 +- man/getExtraOutput.Rd | 110 - man/getPopulation.Rd | 2 man/getPowerFit.Rd | 214 +- man/getPowerFitNested.Rd | 232 +- man/getPowerFitNonNested.Rd | 210 +- man/inspect.Rd | 169 - man/likRatioFit.Rd | 190 +- man/miss.Rd | 183 - man/model.Rd | 574 +++--- man/modelLavaan.Rd | 216 +- man/multipleAllEqual.Rd | 52 man/pValueNested.Rd | 196 +- man/pValueNonNested.Rd | 234 +- man/plotCIwidth.Rd | 162 - man/plotCoverage.Rd | 152 - man/plotCutoffNested.Rd | 144 - man/plotCutoffNonNested.Rd | 178 - man/plotLogitMiss.Rd | 114 - man/plotPowerFit.Rd | 214 +- man/plotPowerFitNested.Rd | 242 +- man/plotPowerFitNonNested.Rd | 202 +- man/rawDraw.Rd | 122 - man/sim.Rd | 606 +++--- man/summaryConverge.Rd | 162 - man/summaryFit.Rd | 124 - man/summaryMisspec.Rd | 150 - man/summaryParam.Rd | 2 man/summaryPopulation.Rd | 2 man/summarySeed.Rd | 88 man/summaryTime.Rd | 94 101 files changed, 18308 insertions(+), 17290 deletions(-)
Title: Conducts Mokken Scale Analysis
Description: Contains functions for performing Mokken
scale analysis on test and questionnaire data (e.g., Sijtsma and Van der Ark, 2017, <doi:10.1111/bmsp.12078>).
It includes an automated item selection algorithm, and various checks of model assumptions.
Author: L. Andries van der Ark [aut, cre],
J. Hendrik Straat [aut],
Letty Koopman [aut]
Maintainer: L. Andries van der Ark <L.A.vanderArk@uva.nl>
Diff between mokken versions 2.8.10 dated 2018-01-28 and 2.8.11 dated 2018-06-03
DESCRIPTION | 16 ++++- MD5 | 20 +++---- R/MLcoefH.R | 92 ++++++++++++++++++++-------------- R/MLweight.R | 29 +++++----- R/plot.iio.class.R | 2 R/plot.monotonicity.class.R | 2 R/plot.pmatrix.class.R | 2 R/plot.restscore.class.R | 2 inst/doc/GettingStartedWithMokken.pdf |binary man/MLweight.Rd | 9 +-- man/mokken-package.Rd | 10 ++- 11 files changed, 108 insertions(+), 76 deletions(-)
Title: Local Interpretable (Model-Agnostic) Visual Explanations
Description: Interpretability of complex machine learning models is a growing concern.
This package helps to understand key factors that drive the
decision made by complicated predictive model (so called black box model).
This is achieved through local approximations that are either based on
additive regression like model or CART like model that allows for
higher interactions. The methodology is based on Tulio Ribeiro, Singh, Guestrin (2016) <doi:10.1145/2939672.2939778>.
More details can be found in Staniak, Biecek (2018) <arXiv:1804.01955>.
Author: Mateusz Staniak [cre, aut],
Przemysław Biecek [aut]
Maintainer: Mateusz Staniak <mateusz.staniak@math.uni.wroc.pl>
Diff between live versions 1.5.4 dated 2018-05-13 and 1.5.7 dated 2018-06-03
live-1.5.4/live/R/old_code.R |only live-1.5.4/live/man/create_task2.Rd |only live-1.5.7/live/DESCRIPTION | 8 - live-1.5.7/live/MD5 | 78 ++++++++++--------- live-1.5.7/live/NAMESPACE | 6 + live-1.5.7/live/NEWS.md | 14 +++ live-1.5.7/live/R/app.R |only live-1.5.7/live/R/explain.R | 60 +++++++------- live-1.5.7/live/R/explore.R | 93 +++++++---------------- live-1.5.7/live/R/generics.R | 8 - live-1.5.7/live/R/helpers.R | 20 ++-- live-1.5.7/live/R/live.R | 5 - live-1.5.7/live/R/old_interface.R |only live-1.5.7/live/R/plot.R | 41 ++++------ live-1.5.7/live/R/sampling_methods.R |only live-1.5.7/live/README.md | 30 ++++--- live-1.5.7/live/inst/doc/wine_quality.R | 14 +-- live-1.5.7/live/inst/doc/wine_quality.Rmd | 20 ++-- live-1.5.7/live/inst/doc/wine_quality.html | 23 ++--- live-1.5.7/live/man/add_predictions.Rd | 4 live-1.5.7/live/man/add_predictions2.Rd | 12 +- live-1.5.7/live/man/create_task.Rd | 6 - live-1.5.7/live/man/fit_explanation.Rd | 4 live-1.5.7/live/man/fit_explanation2.Rd | 2 live-1.5.7/live/man/generate_neighbourhood.Rd | 2 live-1.5.7/live/man/generate_neighbourhood2.Rd | 2 live-1.5.7/live/man/give_predictions.Rd | 2 live-1.5.7/live/man/live.Rd | 5 - live-1.5.7/live/man/live_shiny.Rd |only live-1.5.7/live/man/normal_neighbourhood.Rd |only live-1.5.7/live/man/permutation_neighbourhood.Rd | 2 live-1.5.7/live/man/plot.live_explainer.Rd |only live-1.5.7/live/man/plot_explanation.Rd | 12 -- live-1.5.7/live/man/plot_explanation2.Rd | 9 -- live-1.5.7/live/man/plot_regression.Rd | 8 - live-1.5.7/live/man/plot_regression2.Rd | 4 live-1.5.7/live/man/sample_locally.Rd | 6 - live-1.5.7/live/man/sample_locally2.Rd | 9 +- live-1.5.7/live/man/set_constant_dates.Rd | 2 live-1.5.7/live/tests/testthat.R | 54 +++++++++++++ live-1.5.7/live/tests/testthat/test_explaining.R | 65 +++++++++++++--- live-1.5.7/live/tests/testthat/test_old.R | 54 ++++++------- live-1.5.7/live/tests/testthat/test_simulating.R | 68 +++++++++++----- live-1.5.7/live/vignettes/wine_quality.Rmd | 20 ++-- 44 files changed, 435 insertions(+), 337 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting including the introduced here Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics and a built-in help system. A confirmatory factor analysis of multiple indicator measurement models is available, as are pedagogical routines for data simulation such as for the Central Limit Theorem. Compatible with 'RStudio' and 'knitr' including generation of R markdown instructions for interpretative output.
Author: David W. Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 3.7.4 dated 2018-05-25 and 3.7.5 dated 2018-06-03
DESCRIPTION | 8 MD5 | 40 +-- NEWS | 25 +- R/BarChart.R | 643 +++++++++++++++++++++++++++---------------------------- R/Histogram.R | 10 R/PieChart.R | 23 + R/Plot.R | 12 - R/bc.zmain.R | 49 +--- R/getColors.R | 2 R/hst.zmain.R | 11 R/param.zold.R | 6 R/pc.zmain.R | 22 - R/plt.zlattice.R | 2 R/plt.zmain.R | 5 R/style.R | 41 ++- R/style.zshow.R | 2 R/zzz.R | 154 ++----------- man/Histogram.Rd | 10 man/Plot.Rd | 49 ++-- man/getColors.Rd | 2 man/style.Rd | 4 21 files changed, 534 insertions(+), 586 deletions(-)
Title: IBM in-Database Analytics for R
Description: Functionality required to efficiently use R with IBM(R) Db2(R)
Warehouse offerings (formerly IBM dashDB(R)) and IBM Db2 for z/OS(R) in
conjunction with IBM Db2 Analytics Accelerator for z/OS.
Many basic and complex R operations are pushed down into the database,
which removes the main memory boundary of R and allows to make full
use of parallel processing in the underlying database.
Author: Toni Bollinger [aut, cre],
Alexander Eckert [aut],
Michael Wurst [aut],
Craig Blaha [ctb] (documentation),
IBM Corporation [cph]
Maintainer: Toni Bollinger <db2-analytics@de.ibm.com>
Diff between ibmdbR versions 1.49.0 dated 2017-07-19 and 1.50.0 dated 2018-06-03
DESCRIPTION | 19 + MD5 | 31 +- NAMESPACE | 24 +- R/connect.R | 14 - R/divClust.R | 163 +++++++-------- R/glm.R | 130 +++++++----- R/model.management.R | 25 +- R/sql.R | 386 ++++++++++++++++++++--------------- R/tapply.R |only R/twoStep.R | 541 +++++++++++++++++++++++++++----------------------- build/vignette.rds |binary inst/doc/ibmdbR.pdf |binary man/idaGlm.Rd | 12 - man/idaTApply.Rd |only man/idaTwoStep.Rd | 20 + tests/db2spark.RR |only tests/db2warehouse.RR | 5 tests/main.R | 4 18 files changed, 777 insertions(+), 597 deletions(-)
Title: Excerpt Structuring Comments from Your Code File and Set a Table
of Contents
Description: This is an R interface to the
python package 'excerpts' (<https://pypi.python.org/pypi/excerpts>).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <adc-r@arcor.de>
Diff between excerptr versions 1.4.0 dated 2017-11-30 and 1.4.1 dated 2018-06-03
DESCRIPTION | 10 +++++----- INSTALL | 21 ++++++++++++--------- MD5 | 10 +++++----- NEWS.md | 4 ++++ README.md | 52 +++++++++++++++++++++++----------------------------- build/vignette.rds |binary 6 files changed, 49 insertions(+), 48 deletions(-)
Title: Reddit Data Extraction Toolkit
Description: A collection of tools for extracting structured data from Reddit.
Author: Ivan Rivera <ivan.s.rivera@gmail.com>
Maintainer: Ivan Rivera <ivan.s.rivera@gmail.com>
Diff between RedditExtractoR versions 2.0.2 dated 2015-12-05 and 2.1.2 dated 2018-06-03
RedditExtractoR-2.0.2/RedditExtractoR/R/RedditExtractoR.R |only RedditExtractoR-2.1.2/RedditExtractoR/DESCRIPTION | 21 +- RedditExtractoR-2.1.2/RedditExtractoR/MD5 | 22 +- RedditExtractoR-2.1.2/RedditExtractoR/NAMESPACE | 14 + RedditExtractoR-2.1.2/RedditExtractoR/R/construct_graph.R |only RedditExtractoR-2.1.2/RedditExtractoR/R/get_reddit.R |only RedditExtractoR-2.1.2/RedditExtractoR/R/reddit_content.R |only RedditExtractoR-2.1.2/RedditExtractoR/R/reddit_urls.R |only RedditExtractoR-2.1.2/RedditExtractoR/R/user_network.R |only RedditExtractoR-2.1.2/RedditExtractoR/README.md |only RedditExtractoR-2.1.2/RedditExtractoR/man/RedditExtractoR-package.Rd | 76 +++++----- RedditExtractoR-2.1.2/RedditExtractoR/man/construct_graph.Rd | 3 RedditExtractoR-2.1.2/RedditExtractoR/man/get_reddit.Rd | 3 RedditExtractoR-2.1.2/RedditExtractoR/man/reddit_content.Rd | 3 RedditExtractoR-2.1.2/RedditExtractoR/man/reddit_urls.Rd | 3 RedditExtractoR-2.1.2/RedditExtractoR/man/user_network.Rd |only 16 files changed, 78 insertions(+), 67 deletions(-)
More information about RedditExtractoR at CRAN
Permanent link
Title: K-Sample Rank Tests and their Combinations
Description: Compares k samples using the Anderson-Darling test, Kruskal-Wallis type tests
with different rank score criteria, Steel's multiple comparison test, and the
Jonckheere-Terpstra (JT) test. It computes asymptotic, simulated or (limited) exact
P-values, all valid under randomization, with or without ties, or conditionally
under random sampling from populations, given the observed tie pattern. Except for
Steel's test and the JT test it also combines these tests across several blocks of
samples. Also analyzed are 2 x t contingency tables and their blocked combinations
using the Kruskal-Wallis criterion. Steel's test is inverted to provide simultaneous
confidence bounds for shift parameters. A plotting function compares tail probabilities
obtained under asymptotic approximation with those obtained via simulation or exact
calculations.
Author: Fritz Scholz [aut, cre],
Angie Zhu [aut]
Maintainer: Fritz Scholz <fscholz@u.washington.edu>
Diff between kSamples versions 1.2-7 dated 2017-08-13 and 1.2-8 dated 2018-06-03
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/qn.test.R | 4 ++++ inst/NEWS.Rd | 7 +++++++ man/kSamples-package.Rd | 6 +++--- man/qn.test.Rd | 2 +- man/qn.test.combined.Rd | 2 +- 7 files changed, 26 insertions(+), 15 deletions(-)
Title: Semiparametric Factor and Regression Models for Symmetric
Relational Data
Description: Estimation of the parameters in a model for
symmetric relational data (e.g., the above-diagonal part of a
square matrix), using a model-based eigenvalue decomposition
and regression. Missing data is accommodated, and a posterior
mean for missing data is calculated under the assumption that
the data are missing at random. The marginal distribution of
the relational data can be arbitrary, and is fit with an
ordered probit specification. See Hoff (2007) <arXiv:0711.1146>
for details on the model.
Author: Peter Hoff
Maintainer: Peter Hoff <peter.hoff@duke.edu>
Diff between eigenmodel versions 1.01 dated 2012-03-23 and 1.10 dated 2018-06-03
eigenmodel-1.01/eigenmodel/man/eigenmodel.package.Rd |only eigenmodel-1.10/eigenmodel/DESCRIPTION | 25 +++-- eigenmodel-1.10/eigenmodel/MD5 | 58 ++++++------ eigenmodel-1.10/eigenmodel/NAMESPACE | 10 +- eigenmodel-1.10/eigenmodel/NEWS.md |only eigenmodel-1.10/eigenmodel/R/ULU.R | 10 ++ eigenmodel-1.10/eigenmodel/R/XB.R | 10 ++ eigenmodel-1.10/eigenmodel/R/Y_impute.R | 10 ++ eigenmodel-1.10/eigenmodel/R/addlines.R | 13 ++ eigenmodel-1.10/eigenmodel/R/eigenmodel-package.R |only eigenmodel-1.10/eigenmodel/R/eigenmodel_mcmc.R | 51 ++++++++++- eigenmodel-1.10/eigenmodel/R/eigenmodel_setup.R | 11 ++ eigenmodel-1.10/eigenmodel/R/plot.eigenmodel_post.R | 12 ++ eigenmodel-1.10/eigenmodel/R/rUL_fc.R | 15 ++- eigenmodel-1.10/eigenmodel/R/rZ_fc.R | 13 ++ eigenmodel-1.10/eigenmodel/R/rb_fc.R | 10 ++ eigenmodel-1.10/eigenmodel/R/rmvnorm.R | 12 ++ eigenmodel-1.10/eigenmodel/man/ULU.Rd | 32 +++--- eigenmodel-1.10/eigenmodel/man/XB.Rd | 33 +++---- eigenmodel-1.10/eigenmodel/man/YX_Friend.Rd | 21 ++-- eigenmodel-1.10/eigenmodel/man/Y_Gen.Rd | 14 +-- eigenmodel-1.10/eigenmodel/man/Y_Pro.Rd | 19 ++-- eigenmodel-1.10/eigenmodel/man/Y_impute.Rd | 32 +++--- eigenmodel-1.10/eigenmodel/man/addlines.Rd | 33 +++---- eigenmodel-1.10/eigenmodel/man/eigenmodel-package.Rd |only eigenmodel-1.10/eigenmodel/man/eigenmodel_mcmc.Rd | 78 ++++++++--------- eigenmodel-1.10/eigenmodel/man/eigenmodel_setup.Rd | 28 +++--- eigenmodel-1.10/eigenmodel/man/plot.eigenmodel_post.Rd | 28 +++--- eigenmodel-1.10/eigenmodel/man/rUL_fc.Rd | 30 +++--- eigenmodel-1.10/eigenmodel/man/rZ_fc.Rd | 36 +++---- eigenmodel-1.10/eigenmodel/man/rb_fc.Rd | 24 ++--- eigenmodel-1.10/eigenmodel/man/rmvnorm.Rd | 34 ++++--- 32 files changed, 433 insertions(+), 269 deletions(-)
Title: Estimating the Parameters of a Continuous-Time Markov Chain from
Discrete-Time Data
Description: Functions for estimating Markov generator matrices from discrete-time observations. The implemented approaches comprise diagonal adjustment, weighted adjustment and quasi-optimization of matrix logarithm based candidate solutions, an expectation-maximization algorithm as well as a Gibbs sampler.
Author: Marius Pfeuffer [aut,cre], Greig Smith [ctb], Goncalo dos Reis [ctb]
Maintainer: Marius Pfeuffer <marius.pfeuffer@fau.de>
Diff between ctmcd versions 1.3 dated 2018-06-01 and 1.3.5 dated 2018-06-03
ctmcd-1.3.5/ctmcd/DESCRIPTION | 8 ++++---- ctmcd-1.3.5/ctmcd/MD5 | 23 ++++++++++++----------- ctmcd-1.3.5/ctmcd/NAMESPACE | 2 +- ctmcd-1.3.5/ctmcd/R/gmci.default.R | 5 +---- ctmcd-1.3.5/ctmcd/R/tmci.R |only ctmcd-1.3.5/ctmcd/build/partial.rdb |binary ctmcd-1.3.5/ctmcd/inst/doc/ctmcd_vignette.Rmd | 2 +- ctmcd-1.3.5/ctmcd/inst/doc/ctmcd_vignette.html | 2 +- ctmcd-1.3.5/ctmcd/man/gm.Rd | 3 +++ ctmcd-1.3.5/ctmcd/man/gmci.Rd | 6 ++++-- ctmcd-1.3.5/ctmcd/man/gmci.default.Rd | 9 +++------ ctmcd-1.3.5/ctmcd/man/tmci.Rd |only ctmcd-1.3.5/ctmcd/vignettes/ctmcd_vignette.Rmd | 2 +- ctmcd-1.3/ctmcd/R/ciEMDM.R |only 14 files changed, 31 insertions(+), 31 deletions(-)
Title: US Maps Including Alaska and Hawaii
Description: Obtain United States map data frames of varying region types (e.g. county,
state). The map data frames include Alaska and Hawaii conveniently placed to the
bottom left, as they appear in most maps of the US. Convenience functions for plotting
choropleths and working with FIPS codes are also provided.
Author: Paolo Di Lorenzo [aut, cre]
Maintainer: Paolo Di Lorenzo <paolo@dilorenzo.pl>
Diff between usmap versions 0.2.1 dated 2017-08-15 and 0.3.0 dated 2018-06-03
DESCRIPTION | 8 MD5 | 34 NEWS.md | 12 R/fips.R | 58 R/join-data.R | 25 R/plot-map.R | 4 build/vignette.rds |binary inst/doc/introduction.html | 30 inst/doc/mapping.html | 46 inst/extdata/county_fips.csv | 2 inst/extdata/us_counties.csv |107633 +++++++++++++++++++--------------------- inst/extdata/us_states.csv |25302 ++++----- man/fips.Rd | 19 man/map_with_data.Rd | 7 man/plot_usmap.Rd | 4 tests/testthat/test-fips.R | 28 tests/testthat/test-join-data.R | 11 tests/testthat/test-plot.R | 76 18 files changed, 66577 insertions(+), 66722 deletions(-)
Title: Simulation of Ecological (and Other) Dynamic Systems
Description: An object oriented framework to simulate
ecological (and other) dynamic systems. It can be used for
differential equations, individual-based (or agent-based) and other
models as well. It supports structuring of simulation scenarios (to avoid copy
and paste) and aims to improve readability and re-usability of code.
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between simecol versions 0.8-11 dated 2018-05-08 and 0.8-12 dated 2018-06-03
DESCRIPTION | 14 MD5 | 15 build/partial.rdb |only build/vignette.rds |binary inst/doc/a-simecol-introduction.R | 622 +++++----- inst/doc/a-simecol-introduction.pdf |binary inst/doc/b-simecol-howtos.R | 986 ++++++++-------- inst/doc/b-simecol-howtos.pdf | 2187 ++++++++++++++++++------------------ man/simecol-package.Rd | 486 ++++---- 9 files changed, 2174 insertions(+), 2136 deletions(-)
Title: Quickly Map and Explore Spatial Data
Description: While analyzing geospatial data, easy visualization is often
needed that allows for quick plotting, and simple, but easy interactivity.
Additionally, visualizing geospatial data in projected coordinates is also
desirable. The 'quickmapr' package provides a simple method to visualize
'sp', 'sf' (via coercion to 'sp'), and 'raster' objects, allows for basic
zooming, panning, identifying,labeling, selecting, and measuring spatial
objects. Importantly, it does not require that the data be in geographic
coordinates.
Author: Jeffrey W. Hollister [aut, cre]
Maintainer: Jeffrey W. Hollister <hollister.jeff@epa.gov>
Diff between quickmapr versions 0.2.0 dated 2016-09-16 and 0.3.0 dated 2018-06-03
quickmapr-0.2.0/quickmapr/inst/extdata |only quickmapr-0.3.0/quickmapr/DESCRIPTION | 20 +-- quickmapr-0.3.0/quickmapr/MD5 | 97 +++++++++---------- quickmapr-0.3.0/quickmapr/R/i.R | 6 + quickmapr-0.3.0/quickmapr/R/internals.R | 19 +-- quickmapr-0.3.0/quickmapr/R/qmap.R | 20 +-- quickmapr-0.3.0/quickmapr/README.md | 30 +++-- quickmapr-0.3.0/quickmapr/man/bbox_to_sp.Rd | 1 quickmapr-0.3.0/quickmapr/man/buffer.Rd | 1 quickmapr-0.3.0/quickmapr/man/build_map_data.Rd | 1 quickmapr-0.3.0/quickmapr/man/elev.Rd | 1 quickmapr-0.3.0/quickmapr/man/examp_lakes.Rd | 1 quickmapr-0.3.0/quickmapr/man/f.Rd | 1 quickmapr-0.3.0/quickmapr/man/figures |only quickmapr-0.3.0/quickmapr/man/get_basemap.Rd | 1 quickmapr-0.3.0/quickmapr/man/get_colors.Rd | 1 quickmapr-0.3.0/quickmapr/man/get_range.Rd | 1 quickmapr-0.3.0/quickmapr/man/get_sp_type.Rd | 1 quickmapr-0.3.0/quickmapr/man/i.Rd | 1 quickmapr-0.3.0/quickmapr/man/i_grid.Rd | 1 quickmapr-0.3.0/quickmapr/man/i_line.Rd | 1 quickmapr-0.3.0/quickmapr/man/i_point.Rd | 1 quickmapr-0.3.0/quickmapr/man/i_poly.Rd | 1 quickmapr-0.3.0/quickmapr/man/l.Rd | 1 quickmapr-0.3.0/quickmapr/man/lake.Rd | 1 quickmapr-0.3.0/quickmapr/man/length.Rd | 1 quickmapr-0.3.0/quickmapr/man/m.Rd | 1 quickmapr-0.3.0/quickmapr/man/make_jpw.Rd | 1 quickmapr-0.3.0/quickmapr/man/nlcd.Rd | 1 quickmapr-0.3.0/quickmapr/man/p.Rd | 1 quickmapr-0.3.0/quickmapr/man/plot.qmap.Rd | 1 quickmapr-0.3.0/quickmapr/man/print.qmap.Rd | 1 quickmapr-0.3.0/quickmapr/man/qmap.Rd | 1 quickmapr-0.3.0/quickmapr/man/quickmapr.Rd | 1 quickmapr-0.3.0/quickmapr/man/s.Rd | 1 quickmapr-0.3.0/quickmapr/man/s_line.Rd | 1 quickmapr-0.3.0/quickmapr/man/s_point.Rd | 1 quickmapr-0.3.0/quickmapr/man/s_poly.Rd | 1 quickmapr-0.3.0/quickmapr/man/samples.Rd | 2 quickmapr-0.3.0/quickmapr/man/width.Rd | 1 quickmapr-0.3.0/quickmapr/man/ze.Rd | 1 quickmapr-0.3.0/quickmapr/man/zi.Rd | 1 quickmapr-0.3.0/quickmapr/man/zo.Rd | 1 quickmapr-0.3.0/quickmapr/man/zoom_it.Rd | 1 quickmapr-0.3.0/quickmapr/man/zoom_test.Rd | 1 quickmapr-0.3.0/quickmapr/tests/testthat/test-qmap.R | 27 ++++- 46 files changed, 117 insertions(+), 140 deletions(-)
Title: Categorical Data Analysis and Visualization
Description: Categorical Data Analysis and Visualization.
Author: Alexander Pilhoefer <alexander.pilhoefer@gmail.com>
Maintainer: Alexander Pilhoefer <alexander.pilhoefer@gmail.com>
Diff between extracat versions 1.7-4 dated 2015-11-21 and 1.7-5 dated 2018-06-03
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- src/optile.c | 22 +++++++++++----------- src/registerDynamicSymbol.c |only 4 files changed, 18 insertions(+), 17 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-03 0.2.0
2018-02-09 0.1.3
Title: 'Open Data Kit' ('ODK') R API
Description: Utility functions for working with datasets gathered using
'Open Data Kit' ('ODK') <https://opendatakit.org/>. These include an API to
interface with 'ODK Briefcase', a 'Java' application for fetching and pushing
'ODK' forms and their contents, that allows pulling of data from either a remote
'ODK Aggregate Server' or a local 'ODK' folder, a rename function to give more
human readable variable names for 'ODK' datasets, a merge function to create
a single dataframe from a nested 'ODK' dataset and an expand function to
disaggregate multiple choice answers that have been collapsed into single code
by 'ODK'.
Author: Ernest Guevarra [aut, cre, cph]
(<https://orcid.org/0000-0002-4887-4415>),
Laura Bramley [aut, cph],
Valid International [cph]
Maintainer: Ernest Guevarra <ernestgmd@gmail.com>
Diff between odkr versions 0.1.3 dated 2018-02-09 and 0.2.0 dated 2018-06-03
DESCRIPTION | 35 ++++++++++++++------------- LICENSE | 2 - MD5 | 46 +++++++++++++++++++---------------- NAMESPACE | 3 ++ NEWS.md | 28 +++++++++++++++++---- R/export_data.R | 49 ++++++++++++++++++++++++++++---------- R/get_briefcase.R | 29 +++++++++++++++++++++- R/get_help.R | 21 ++++++++++++++-- R/odkr.R | 40 +++++++++++++++++++++---------- R/pull_local.R | 48 ++++++++++++++++++++++++++++--------- R/pull_remote.R | 43 +++++++++++++++++++++++++++------ R/push_data.R |only README.md | 21 ++++++++++++---- man/export_data.Rd | 7 +++-- man/figures |only man/get_help.Rd | 1 man/odkr.Rd | 7 ++--- man/pull_local.Rd | 8 +++--- man/pull_remote.Rd | 7 +++-- man/push_data.Rd |only man/sampleData2.Rd | 12 ++++++--- man/sampleData3.Rd | 12 ++++++--- tests/testthat/test_export_data.R | 38 ++++++++++++++++++++++++++++- tests/testthat/test_pull_local.R | 28 +++++++++++++++++++++ tests/testthat/test_pull_remote.R | 36 +++++++++++++++++++++++++++ tests/testthat/test_push_data.R |only 26 files changed, 404 insertions(+), 117 deletions(-)