Title: Biplot of Multivariate Data Based on Principal Components
Analysis
Description: Implements biplot (2d and 3d) of multivariate data based
on principal components analysis and diagnostic tools of the quality of the reduction.
Author: José Cláudio Faria, Clarice Garcia Borges Demétrio and Ivan Bezerra Allaman
Maintainer: Jose Claudio Faria <joseclaudio.faria@gmail.com>
Diff between bpca versions 1.2-2 dated 2013-11-24 and 1.3-0 dated 2018-06-11
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- INDEX | 2 +- MD5 | 39 ++++++++++++++++++++------------------- NAMESPACE | 15 ++++++++++++++- README.md |only build/vignette.rds |binary demo/bpca.R | 12 ++++++------ demo/bpca.d2_4.static.3d.R | 2 +- demo/bpca.dinamic.3d.R | 2 +- demo/bpca.static.2d.R | 2 +- demo/bpca.static.3d.R | 2 +- demo/dt.tools.R | 4 ++-- demo/rock.var.rd.R | 12 ++++++------ inst/doc/latex_bpca.pdf |binary man/bpca-package.Rd | 4 ++-- man/bpca.Rd | 14 +++++++------- man/dt.tools.Rd | 4 ++-- man/gge2003.Rd | 4 ++-- man/latex.bpca.Rd | 12 ++++++------ man/plot.Rd | 14 +++++++------- 21 files changed, 86 insertions(+), 69 deletions(-)
Title: Partial Least Squares Regression for Generalized Linear Models
Description: Provides (weighted) Partial least squares Regression for generalized linear models and repeated k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.
Author: Frederic Bertrand [cre, aut] (<https://orcid.org/0000-0002-0837-8281>),
Myriam Maumy-Bertrand [aut] (<https://orcid.org/0000-0002-4615-1512>)
Maintainer: Frederic Bertrand <frederic.bertrand@math.unistra.fr>
Diff between plsRglm versions 1.2.1 dated 2018-06-02 and 1.2.3 dated 2018-06-11
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NAMESPACE | 8 ++++++++ NEWS | 3 +++ R/cv.plsR.R | 2 +- R/cv.plsRglm.R | 2 +- R/plsR.R | 2 +- R/plsRglm.R | 2 +- man/cv.plsRglm.Rd | 5 +++-- man/cvtable.Rd | 18 +++++++++++++++++- man/plot.table.summary.cv.plsRglmmodel.Rd | 10 ++++++++++ man/plot.table.summary.cv.plsRmodel.Rd | 11 ++++++++++- 12 files changed, 70 insertions(+), 23 deletions(-)
Title: Partial Least Squares Regression for Beta Regression Models
Description: Provides Partial least squares Regression for (weighted) beta regression models and k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.
Author: Frederic Bertrand [cre, aut] (<https://orcid.org/0000-0002-0837-8281>),
Myriam Maumy-Bertrand [aut] (<https://orcid.org/0000-0002-4615-1512>)
Maintainer: Frederic Bertrand <frederic.bertrand@math.unistra.fr>
Diff between plsRbeta versions 0.2.1 dated 2018-06-02 and 0.2.2 dated 2018-06-11
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 2 ++ NEWS | 1 + R/plsRbeta.R | 2 +- 5 files changed, 12 insertions(+), 9 deletions(-)
Title: Adaptive Multivariate Integration over Hypercubes
Description: R wrapper around the cubature C library of
Steven G. Johnson for adaptive multivariate integration over hypercubes.
This version provides both hcubature and pcubature routines in addition
to a vector interface that results in substantial speed gains.
Author: Balasubramanian Narasimhan [aut, cre],
Manuel Koller [ctb],
Steven G. Johnson [aut]
Maintainer: Balasubramanian Narasimhan <naras@stat.stanford.edu>
Diff between cubature versions 1.3-11 dated 2017-07-19 and 1.3-13 dated 2018-06-11
cubature-1.3-11/cubature/ChangeLog |only cubature-1.3-11/cubature/src/cubature-1.0.2 |only cubature-1.3-13/cubature/DESCRIPTION | 7 cubature-1.3-13/cubature/MD5 | 49 - cubature-1.3-13/cubature/NEWS.md |only cubature-1.3-13/cubature/README.md | 18 cubature-1.3-13/cubature/build/vignette.rds |binary cubature-1.3-13/cubature/inst/doc/cubature.R | 3 cubature-1.3-13/cubature/inst/doc/cubature.Rmd | 38 - cubature-1.3-13/cubature/inst/doc/cubature.html | 776 +++++++++++++++++------- cubature-1.3-13/cubature/src/Makevars | 15 cubature-1.3-13/cubature/src/Makevars.win | 13 cubature-1.3-13/cubature/src/cubature-1.0.3 |only cubature-1.3-13/cubature/vignettes/cubature.Rmd | 38 - 14 files changed, 669 insertions(+), 288 deletions(-)
Title: Symbolic Differentiation
Description: R-based solution for symbolic differentiation. It admits
user-defined function as well as function substitution
in arguments of functions to be differentiated. Some symbolic
simplification is part of the work.
Author: Andrew Clausen [aut],
Serguei Sokol [aut, cre]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between Deriv versions 3.8.4 dated 2018-02-15 and 3.8.5 dated 2018-06-11
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ NEWS | 8 +++++++ R/Deriv.R | 12 +++++------ R/Simplify.R | 52 ++++++++++++++++++++++++++++----------------------- inst/CITATION | 2 - man/Deriv-package.Rd | 4 +-- 7 files changed, 56 insertions(+), 42 deletions(-)
Title: A Solver for 'ompr' that Uses the R Optimization Infrastructure
('ROI')
Description: A solver for 'ompr' based on the R Optimization Infrastructure ('ROI').
The package makes all solvers in 'ROI' available to solve 'ompr' models. Please see the
'ompr' website <https://dirkschumacher.github.io/ompr> and package docs for more information
and examples on how to use it.
Author: Dirk Schumacher [aut, cre]
Maintainer: Dirk Schumacher <mail@dirk-schumacher.net>
Diff between ompr.roi versions 0.7.0 dated 2017-11-18 and 0.8.0 dated 2018-06-11
DESCRIPTION | 10 ++--- MD5 | 12 +++---- NEWS.md | 12 +++++++ R/as-roi-model.R | 5 -- R/with-roi.R | 36 +++++++++++++++++++-- man/with_ROI.Rd | 5 ++ tests/testthat/test-solver-roi.R | 66 ++++++++++++++++++++++++++++++++++++++- 7 files changed, 125 insertions(+), 21 deletions(-)
Title: S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)
Description: An S3 class with methods for totally ordered indexed
observations. It is particularly aimed at irregular time series
of numeric vectors/matrices and factors. zoo's key design goals
are independence of a particular index/date/time class and
consistency with ts and base R by providing methods to extend
standard generics.
Author: Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Gabor Grothendieck [aut],
Jeffrey A. Ryan [aut],
Joshua M. Ulrich [ctb],
Felix Andrews [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between zoo versions 1.8-1 dated 2018-01-08 and 1.8-2 dated 2018-06-11
DESCRIPTION | 12 ++--- MD5 | 54 +++++++++++++------------- NAMESPACE | 4 + NEWS | 25 ++++++++++++ R/ggplot2.zoo.R | 23 ++++++++--- R/index.R | 2 R/is.regular.R | 6 +- R/na.fill.R | 53 +++++++++++++++++++++++-- R/na.locf.R | 7 +++ R/read.zoo.R | 4 - R/rollapply.R | 8 ++- R/rollmean.R | 70 ++++++++++++++++++++++++---------- R/zoo.R | 2 R/zzz.R | 30 ++++++++++++++ build/vignette.rds |binary inst/doc/zoo-design.pdf | 14 +++--- inst/doc/zoo-faq.pdf |binary inst/doc/zoo-quickref.pdf |binary inst/doc/zoo-read.pdf |binary inst/doc/zoo.pdf |binary man/merge.zoo.Rd | 14 ++++++ man/na.fill.Rd | 12 +++++ man/na.locf.Rd | 9 ++++ man/read.zoo.Rd | 5 ++ man/rollapply.Rd | 22 ++++++++++ man/rollmean.Rd | 5 ++ tests/Examples/zoo-Ex.Rout.save | 82 +++++++++++++++++++++++++++++++++++++--- tests/na.fill.R |only tests/na.fill.Rout.save |only 29 files changed, 378 insertions(+), 85 deletions(-)
Title: Projection Pursuit Classification Forest
Description: Implements projection pursuit forest algorithm for supervised classification.
Author: Natalia da Silva, Eun-Kyung Lee, Di Cook
Maintainer: Natalia da Silva <natalia@iesta.edu.uy>
Diff between PPforest versions 0.1.0 dated 2017-12-15 and 0.1.1 dated 2018-06-11
DESCRIPTION | 11 +++-- MD5 | 24 ++++++------ NEWS.md | 7 +-- R/PPforest.R | 6 +-- R/ppf_avg_imp.R | 2 - R/ppf_global_imp.R | 2 - R/ternary_str.R | 2 - README.md | 3 - build/vignette.rds |binary inst/doc/PPforest-vignette.R | 6 +-- inst/doc/PPforest-vignette.Rmd | 8 ++-- inst/doc/PPforest-vignette.html | 75 ++++++++++++++++++++-------------------- vignettes/PPforest-vignette.Rmd | 8 ++-- 13 files changed, 77 insertions(+), 77 deletions(-)
Title: Model and Solve Mixed Integer Linear Programs
Description: Model mixed integer linear programs in an algebraic way directly in R.
The model is solver-independent and thus offers the possibility
to solve a model with different solvers. It currently only supports
linear constraints and objective functions. See the 'ompr'
website <https://dirkschumacher.github.io/ompr> for more information,
documentation and examples.
Author: Dirk Schumacher [aut, cre]
Maintainer: Dirk Schumacher <mail@dirk-schumacher.net>
Diff between ompr versions 0.7.0 dated 2017-11-17 and 0.8.0 dated 2018-06-11
DESCRIPTION | 11 MD5 | 77 ++++-- NAMESPACE | 24 + NEWS.md | 15 + R/class-model.R | 30 -- R/class-solution.R | 123 ++++++++-- R/helper.R | 38 ++- R/linearopt-variables.R |only R/milp.R |only R/model-api.R | 25 +- R/ompr-package.R | 1 man/LinearVariable-class.Rd |only man/LinearVariableCollection-LinearVariableCollection-method.Rd |only man/LinearVariableCollection-LinearVariableSum-method.Rd |only man/LinearVariableCollection-class.Rd |only man/LinearVariableCollection-missing-method.Rd |only man/LinearVariableCollection-numeric-method.Rd |only man/LinearVariableSum-LinearVariableCollection-method.Rd |only man/LinearVariableSum-LinearVariableSum-method.Rd |only man/LinearVariableSum-class.Rd |only man/LinearVariableSum-missing-method.Rd |only man/LinearVariableSum-numeric-method.Rd |only man/MILPModel.Rd |only man/as_colwise.Rd |only man/colwise.Rd |only man/get_column_duals.Rd |only man/get_row_duals.Rd |only man/get_solution.Rd | 11 man/nconstraints.Rd |only man/new_solution.Rd | 10 man/numeric-LinearVariableCollection-method.Rd |only man/numeric-LinearVariableSum-method.Rd |only man/plus-LinearVariableCollection-LinearVariableCollection-method.Rd |only man/plus-LinearVariableCollection-LinearVariableSum-method.Rd |only man/plus-LinearVariableCollection-missing-method.Rd |only man/plus-LinearVariableCollection-numeric-method.Rd |only man/plus-LinearVariableSum-LinearVariableCollection-method.Rd |only man/plus-LinearVariableSum-LinearVariableSum-method.Rd |only man/plus-LinearVariableSum-missing-method.Rd |only man/plus-LinearVariableSum-numeric-method.Rd |only man/plus-numeric-LinearVariableCollection-method.Rd |only man/plus-numeric-LinearVariableSum-method.Rd |only man/slash-LinearVariableCollection-numeric-method.Rd |only man/slash-LinearVariableSum-numeric-method.Rd |only man/sub-LinearVariableCollection-ANY-ANY-missing-method.Rd |only man/times-LinearVariableCollection-numeric-method.Rd |only man/times-LinearVariableSum-numeric-method.Rd |only man/times-numeric-LinearVariableCollection-method.Rd |only man/times-numeric-LinearVariableSum-method.Rd |only tests/testthat/test-add-constraint-milp.R |only tests/testthat/test-add-constraint.R | 12 tests/testthat/test-add-variable-milp.R |only tests/testthat/test-add-variable.R | 4 tests/testthat/test-linearops.R |only tests/testthat/test-model-api-milp.R |only tests/testthat/test-model-api.R | 12 tests/testthat/test-model-milp.R |only tests/testthat/test-model.R | 40 +-- tests/testthat/test-set-bounds-milp.R |only tests/testthat/test-set-bounds.R | 2 tests/testthat/test-solution-milp.R |only tests/testthat/test-solution.R | 67 +++++ 62 files changed, 389 insertions(+), 113 deletions(-)
Title: Extreme Value Analysis
Description: Functions for performing extreme value analysis.
Author: Eric Gilleland
Maintainer: Eric Gilleland <ericg@ucar.edu>
Diff between extRemes versions 2.0-8 dated 2016-08-29 and 2.0-9 dated 2018-06-11
DESCRIPTION | 12 +++--- MD5 | 23 ++++++------- NAMESPACE | 8 ++++ R/abba.R | 4 +- R/dependence.R | 2 - R/fitdiagnostics.R | 71 +++++++++++++++++++++++++++-------------- R/fitfuns.R | 26 +++++++++------ R/misc.R | 81 +++++++++++++++++++++++++++++++++++++++++++++++ man/extRemes-internal.Rd | 3 + man/extRemes-package.Rd | 4 -- man/fevd.Rd | 6 +-- man/strip.Rd |only src/abba.c | 13 +++++++ 13 files changed, 193 insertions(+), 60 deletions(-)
Title: Fetch Climate Data from Environment Canada
Description: The Environment Canada climate archives <http://climate.weather.gc.ca/>
are an important source of data for climate researchers in Canada and world wide.
The repository contains temperature, precipitation, and wind data for more than
8,000 locations. The functions in this package simplify the process of downloading,
subsetting, and manipulating these data for the purposes of more efficient workflows
in climate research.
Author: Dewey Dunnington <dewey@fishandwhistle.net>
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between rclimateca versions 1.0.1 dated 2018-03-25 and 1.0.2 dated 2018-06-11
rclimateca-1.0.1/rclimateca/tests/testthat/ec.cache/02dfd2fca9898ae33c3f88a678fc0bab.csv |only rclimateca-1.0.1/rclimateca/tests/testthat/ec.cache/1a3b3824d72ca8552f007ce4960370ba.csv |only rclimateca-1.0.1/rclimateca/tests/testthat/ec.cache/1bbcdf9faea27421094b5e5a1deb01a7.csv |only rclimateca-1.0.1/rclimateca/tests/testthat/ec.cache/1edfb81ceff03b4e7697ff793804c89f.csv |only rclimateca-1.0.1/rclimateca/tests/testthat/ec.cache/1fc232e331ad8c017bdc0e49eaa6ea2b.csv |only rclimateca-1.0.1/rclimateca/tests/testthat/ec.cache/29e5d403c40581cd6ced57e858da945b.csv |only rclimateca-1.0.1/rclimateca/tests/testthat/ec.cache/2c252ee6a1a7145cd3bc4e1585b7aa2f.csv |only rclimateca-1.0.1/rclimateca/tests/testthat/ec.cache/34d9e8c7b172880f9f82b17d69fcf166.csv |only rclimateca-1.0.1/rclimateca/tests/testthat/ec.cache/383bb86e370348fec409c4904cee2924.csv |only rclimateca-1.0.1/rclimateca/tests/testthat/ec.cache/405ea8ea731cac35b7cade577a36d00c.csv |only 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rclimateca-1.0.2/rclimateca/tests/testthat/ec.cache/fb11e54a4145460ea964a9d6edda2005.csv |only rclimateca-1.0.2/rclimateca/tests/testthat/ec.cache/fba0a8984d7b74110ce9a3e43c2fdd45.csv |only rclimateca-1.0.2/rclimateca/tests/testthat/ec.cache/fc0bc2da4bcb1c94ab85ec6cb9d8b6f5.csv | 3 rclimateca-1.0.2/rclimateca/tests/testthat/ec.cache/fdfd4ad3d2c59fa780023faa3f2283e7.csv |only rclimateca-1.0.2/rclimateca/tests/testthat/test-climate_data.R | 9 rclimateca-1.0.2/rclimateca/tests/testthat/test-deprecated_functions.R | 6 149 files changed, 4608 insertions(+), 4579 deletions(-)
Title: An Installation Framework for Shiny Apps
Description: Installs shiny apps using Inno Setup, an open source software that builds installers for Windows programs <http://www.jrsoftware.org/ishelp/>.
Author: Jon Hill [aut, cre, cph],
W. Lee Pang [aut, cph] (DesktopDeployR project at
https://github.com/wleepang/DesktopDeployR),
Hanjo Odendaal [ctb],
William Bradley [ctb],
Brent (Tom) Bailey [ctb],
Mikołaj Rybiński [ctb],
Chase Clark [ctb]
Maintainer: Jon Hill <jon.mark.hill@gmail.com>
Diff between RInno versions 0.2.0 dated 2018-01-24 and 0.2.1 dated 2018-06-11
DESCRIPTION | 28 +++--- MD5 | 60 +++++++------ NAMESPACE | 3 NEWS.md | 5 + R/copy_installation.R | 12 +- R/create_app.R | 17 ++- R/create_config.R | 15 +-- R/directives_section.R | 6 + R/files_section.R | 48 ++++++---- R/get_R.R | 6 - R/get_Rtools.R |only R/run_section.R | 6 - R/standardize_pkgs.R | 81 +++++++++++++++++ README.md | 2 build/vignette.rds |binary inst/doc/Introduction.html | 4 inst/doc/cont-installation.html | 4 inst/installation/app.R | 6 - inst/installation/code.iss | 141 +++++++++++++++++-------------- inst/installation/ensure.R | 33 +++---- inst/installation/get_app_from_app_url.R | 2 inst/installation/package_manager.R | 18 +-- man/add_pkgs.Rd |only man/copy_installation.Rd | 5 - man/cran_version.Rd |only man/create_app.Rd | 16 ++- man/directives_section.Rd | 11 +- man/files_section.Rd | 4 man/get_R.Rd | 2 man/get_Rtools.Rd |only man/run_section.Rd | 1 man/standardize_pkgs.Rd | 4 tests/testthat/test_files.R | 2 33 files changed, 347 insertions(+), 195 deletions(-)
Title: Functions Useful in the Design and ANOVA of Experiments
Description: The content falls into the following groupings: (i) Data, (ii)
Factor manipulation functions, (iii) Design functions, (iv) ANOVA functions, (v)
Matrix functions, (vi) Projector and canonical efficiency functions, and (vii)
Miscellaneous functions. There is a vignette describing how to use the
Design functions for randomizing and assessing designs available in the file
'daeDesignNotes.pdf'. The ANOVA functions facilitate the extraction of
information when the 'Error' function has been used in the call to 'aov'.
Author: Chris Brien <Chris.Brien@unisa.edu.au>.
Maintainer: Chris Brien <Chris.Brien@unisa.edu.au>
Diff between dae versions 3.0-12 dated 2017-12-04 and 3.0-16 dated 2018-06-11
DESCRIPTION | 10 ++-- MD5 | 33 +++++++------- R/dae.utilties.r | 14 ++++-- R/daeAttach.r | 2 R/fac.layout.v3.r | 2 R/mat.functions.r | 2 R/projs.canon.v5.r | 87 ++++++++++++++++++++++++++++---------- build/partial.rdb |binary inst/NEWS.Rd | 18 +++++++ inst/doc/dae-manual.pdf |binary man/daeTips.Rd | 2 man/designAnatomy.Rd | 2 man/fac.layout.Rd | 5 +- man/mat.Vpred.Rd | 4 - tests/testthat.R | 2 tests/testthat/testCanon.r | 8 +-- tests/testthat/testOneStructure.r |only tests/testthat/testSources.r | 6 +- 18 files changed, 136 insertions(+), 61 deletions(-)
Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories,
consisting in four stages, pre-processing activity data, preparing
emissions factors, estimating the emissions and post-processing of emissions
in maps and databases.
Author: Sergio Ibarra-Espinosa [aut, cre]
(<https://orcid.org/0000-0002-3162-1905>)
Maintainer: Sergio Ibarra-Espinosa <sergio.ibarra@usp.br>
Diff between vein versions 0.3.9 dated 2018-03-01 and 0.3.35 dated 2018-06-11
DESCRIPTION | 12 - MD5 | 138 ++++++++++-------- NAMESPACE | 13 - NEWS.md | 129 +++++++++++++++++ R/adt.R | 41 +++-- R/age_hdv.R | 43 ++++- R/age_ldv.R | 39 ++++- R/age_moto.R | 43 ++++- R/ef_hdv_scaled.R | 19 +- R/ef_hdv_speed.R | 118 +++++++++++++--- R/ef_ldv_cold.R | 1 R/ef_ldv_scaled.R | 24 ++- R/ef_ldv_speed.R | 132 ++++++++++++++--- R/ef_wear.R | 47 +++++- R/emis.R | 65 +++++++- R/emis_cold.R | 18 ++ R/emis_det.R | 4 R/emis_grid.R | 68 ++++----- R/emis_merge.R | 13 - R/emis_paved.R | 39 +++-- R/emis_post.R | 53 +++++-- R/emis_wear.R | 119 +++++++++++++--- R/emis_wrf.R | 131 ++++++++++------- R/fuel_corr.R |only R/invcop.R |only R/inventory.R | 124 ++++++++++------ R/make_grid.R | 57 ++++++- R/my_age.R | 34 +++- R/netspeed.R | 46 ++++-- R/speciate.R | 209 ++++++++++++++++++++++++++-- R/sysdata.rda |binary R/temp_fact.R | 20 ++ R/vkm.R | 28 +++ demo/VEIN.R | 2 inst/README.Rmd | 230 ++++++++++++++++++++++++++++--- inst/README.html | 243 ++++++++++++++++++++++++++------- man/adt.Rd | 10 - man/age_hdv.Rd | 13 + man/age_ldv.Rd | 12 + man/age_moto.Rd | 12 + man/ef_hdv_scaled.Rd | 12 + man/ef_hdv_speed.Rd | 76 +++++++++- man/ef_ldv_cold.Rd | 1 man/ef_ldv_scaled.Rd | 16 +- man/ef_ldv_speed.Rd | 74 +++++++++- man/ef_wear.Rd | 8 - man/emis.Rd | 44 +++++ man/emis_cold.Rd | 6 man/emis_det.Rd | 4 man/emis_grid.Rd | 43 ----- man/emis_merge.Rd | 3 man/emis_paved.Rd | 6 man/emis_post.Rd | 27 +++ man/emis_wear.Rd | 22 ++ man/emis_wrf.Rd | 17 +- man/fuel_corr.Rd |only man/invcop.Rd |only man/inventory.Rd | 26 ++- man/make_grid.Rd | 13 + man/my_age.Rd | 21 +- man/netspeed.Rd | 17 +- man/speciate.Rd | 44 ++++- man/temp_fact.Rd | 12 + man/vkm.Rd | 8 - tests/testthat/test-age_hdv.R |only tests/testthat/test-age_ldv.R |only tests/testthat/test-age_moto.R |only tests/testthat/test-ef_evap.R |only tests/testthat/test-ef_hdv_scaled.R |only tests/testthat/test-ef_hdv_speed.R |only tests/testthat/test-ef_ldv_cold.R |only tests/testthat/test-ef_ldv_cold_list.R |only tests/testthat/test-ef_ldv_scaled.R |only tests/testthat/test-ef_ldv_speed.R |only tests/testthat/test-ef_nitro.R |only tests/testthat/test-ef_wear.R |only tests/testthat/test-emis.R |only tests/testthat/test-emis_cold.R |only tests/testthat/test-emis_det.R |only tests/testthat/test-emis_wear.R |only 80 files changed, 2201 insertions(+), 648 deletions(-)
Title: Add Even More Interactivity to Interactive Charts
Description: Like package 'manipulate' does for static graphics, this package
helps to easily add controls like sliders, pickers, checkboxes, etc. that
can be used to modify the input data or the parameters of an interactive
chart created with package 'htmlwidgets'.
Author: Jalal-Edine ZAWAM [aut, cre],
Francois Guillem [aut],
RTE [cph],
JJ Allaire [ctb],
Marion Praz [ctb] (New user interface),
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Duncan Murdoch [ctb]
Maintainer: Jalal-Edine ZAWAM <jalal-edine.zawam@rte-france.com>
Diff between manipulateWidget versions 0.9.0 dated 2018-03-26 and 0.10.0 dated 2018-06-11
DESCRIPTION | 11 +- MD5 | 33 +++++--- NAMESPACE | 1 NEWS.md | 9 ++ R/controller.R | 27 +++++- R/manipulate_widget.R | 13 ++- R/module_ui.R | 12 +-- R/mw_ui.R | 107 ++++++++++++++++++++------- R/zzz.R | 1 inst/doc/manipulateWidgets.html | 16 ++-- inst/lib |only inst/manipulate_widget/manipulate_widget.css | 8 +- inst/manipulate_widget/manipulate_widget.js | 15 +++ man/manipulateWidget.Rd | 7 + man/mwModule.Rd | 13 ++- 15 files changed, 200 insertions(+), 73 deletions(-)
More information about manipulateWidget at CRAN
Permanent link
Title: Compute, Handle, Plot and Model Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<http://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Author: Thibaut Jombart [aut, cre],
Rich FitzJohn [aut],
Jun Cai [ctb],
Sangeeta Bhatia [ctb]
Maintainer: Thibaut Jombart <thibautjombart@gmail.com>
Diff between incidence versions 1.3.0 dated 2018-06-01 and 1.3.1 dated 2018-06-11
DESCRIPTION | 6 +++--- MD5 | 17 +++++++++-------- NEWS.md | 11 +++++++++++ R/internals.R | 13 +++++++++++++ R/plot.R | 9 +++++++-- inst/doc/conversions.html | 16 ++++++++-------- inst/doc/customize_plot.html | 34 +++++++++++++++++----------------- inst/doc/incidence_class.html | 8 ++++---- inst/doc/overview.html | 40 ++++++++++++++++++++-------------------- tests/testthat/test-cumulate.R |only 10 files changed, 92 insertions(+), 62 deletions(-)
Title: Aids in Processing and Plotting Data from a Lemna-Tec
Scananalyzer
Description: Extracts traits from imaging data produced using a Lemna-Tec Scananalyzer
(see <http://www.lemnatec.com/products/hardware-solutions/scanalyzer-3d> for more
information). Growth rates between successive imagings are obtained and those for
a nominated set of intervals can also be calculated. Profile or longitudinal plots
of the traits and growth rates can be produced. These allow one to check for
anomalous data and to explore growth patterns in the data.
Author: Chris Brien <Chris.Brien@unisa.edu.au>.
Maintainer: Chris Brien <Chris.Brien@unisa.edu.au>
Diff between imageData versions 0.1-41 dated 2017-12-03 and 0.1-50 dated 2018-06-11
DESCRIPTION | 10 - MD5 | 59 +++--- NAMESPACE | 2 R/PVA.r | 258 +++++++++++++++++--------- R/dataLongi_v7.r | 321 +++++++++++++++++++++++---------- R/dataLongi_v8.r |only R/imageDataUtilities.r | 16 + build/partial.rdb |binary data/RiceRaw.dat.rda |binary data/exampleData.rda |binary inst/News.Rd | 40 ++++ inst/doc/imageData-Ex.pdf |only inst/doc/imageData-manual.pdf |binary man/corrPlot.Rd | 15 + man/fitSpline.Rd | 33 ++- man/importExcel.Rd | 46 ++++ man/longitudinalPrime.Rd | 153 ++++++++++----- man/probeDF.Rd | 23 +- man/splitSplines.Rd | 33 ++- tests/testthat.R | 4 tests/testthat/TestSplines.r | 63 ++++++ tests/testthat/data/area.dat.rda |binary tests/testthat/data/chkpeadat.rda |binary tests/testthat/data/dat1.rda |binary tests/testthat/data/raw.19.dat.rda |only tests/testthat/data/raw.RGB.dat.rda |only tests/testthat/data/raw.fluo.dat.rda |only tests/testthat/data/raw19datarow.csv |only tests/testthat/data/rawFLUOdatarow.csv |only tests/testthat/data/rawRGBdatarow.csv |only tests/testthat/data/testSpline.rda |binary tests/testthat/testImportXL.r |only tests/testthat/testLongiPrime.r |only tests/testthat/testPVA.r |only tests/testthat/testProbeDF.r | 27 ++ tests/testthat/testRice.r | 17 - 36 files changed, 820 insertions(+), 300 deletions(-)
Title: Loading Google Adwords Data into R
Description: Aims at loading Google Adwords data into R. Adwords is an online
advertising service that enables advertisers to display advertising copy to web
users (see <https://developers.google.com/adwords/> for more information).
Therefore the package implements three main features. First, the package
provides an authentication process for R with the Google Adwords API (see
<https://developers.google.com/adwords/api/> for more information) via OAUTH2.
Second, the package offers an interface to apply the Adwords query language in
R and query the Adwords API with ad-hoc reports. Third, the received data are
transformed into suitable data formats for further data processing and data
analysis.
Author: Johannes Burkhardt <johannes.burkhardt@gmail.com>, Matthias Bannert
<matthias.bannert@gmail.com>
Maintainer: Johannes Burkhardt <johannes.burkhardt@gmail.com>
Diff between RAdwords versions 0.1.16 dated 2018-04-16 and 0.1.17 dated 2018-06-11
DESCRIPTION | 6 +-- MD5 | 78 +++++++++++++++++++++++++++++++++++++++---------- NEWS | 14 ++++++++ R/getAuth.R | 6 ++- R/getData.R | 53 +++++++++++++++++++++++++-------- R/metrics.R | 5 +-- R/refreshToken.R | 13 +++++--- R/reports.R | 5 +-- R/statement.R | 22 +++++++------ R/transformData.R | 5 +-- README.md | 77 +++++++++++++++++++++++++++++++----------------- inst/extdata/api201806 |only man/getData.Rd | 4 +- man/metrics.Rd | 4 +- man/reports.Rd | 4 +- man/statement.Rd | 4 +- man/transformData.Rd | 4 +- 17 files changed, 214 insertions(+), 90 deletions(-)
Title: Directional Statistics
Description: A collection of functions for directional data analysis. Hypothesis testing, discriminant and regression analysis, MLE of distributions and more are included. The standard textbook for such data is the "Directional Statistics" by Mardia, K. V. and Jupp, P. E. (2000).
Author: Michail Tsagris, Giorgos Athineou, Anamul Sajib, Eli Amson
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Directional versions 3.1 dated 2018-03-19 and 3.2 dated 2018-06-11
DESCRIPTION | 8 ++++---- MD5 | 20 +++++++++++++------- R/ESAG.da.R |only R/ESAGda.pred.R |only R/dirda.cv.R |only man/Directional-package.Rd | 4 ++-- man/ESAG.da.Rd |only man/ESAGda.pred.Rd |only man/ESAGdensity.Rd | 4 ++-- man/ESAGmle.Rd | 6 +++--- man/ESAGsim.Rd | 10 +++++----- man/dirda.cv.Rd |only man/vmf.da.Rd | 2 +- man/vmfda.pred.Rd | 6 +++--- 14 files changed, 33 insertions(+), 27 deletions(-)
Title: Mini Charts for Interactive Maps
Description: Add and modify small charts on an interactive map created with
package 'leaflet'. These charts can be used to represent at same time multiple
variables on a single map.
Author: Jalal-Edine ZAWAM [aut, cre],
Benoit Thieurmel [aut],
Francois Guillem [aut],
RTE [cph]
Maintainer: Jalal-Edine ZAWAM <jalal-edine.zawam@rte-france.com>
Diff between leaflet.minicharts versions 0.5.3 dated 2018-04-26 and 0.5.4 dated 2018-06-11
DESCRIPTION | 8 ++++-- MD5 | 12 +++++----- NEWS | 7 +++++ R/add_minicharts.R | 2 - inst/doc/introduction.html | 48 ++++++++++++++++++++--------------------- inst/leaflet.minicharts.min.js | 26 +++++++++++----------- man/addMinicharts.Rd | 2 - 7 files changed, 57 insertions(+), 48 deletions(-)
More information about leaflet.minicharts at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-11 0.4-0
2010-02-09 0.3-0
2009-07-21 0.2-0
Title: Tools for Data Manipulation and Testing
Description: This is a set of simple utilities for various data manipulation and testing tasks.
The goal is to use core R tools well, without bringing in many
dependencies. Main areas of interest are semi-automated data frame manipulation, such as
converting factors in multiple binary indicator columns. There are testing
functions which provide 'testthat' expectations to permute arguments to
function calls. There are functions and data to test extreme numbers, dates,
and bad input of various kinds which should allow testing failure and corner
cases, which can be used for fuzzing your functions. The test suite has many examples of usage.
Author: Jack O. Wasey [aut, cre, cph]
Maintainer: Jack O. Wasey <jack@jackwasey.com>
Diff between jwutil versions 1.1.1 dated 2016-10-18 and 1.2.1 dated 2018-06-11
jwutil-1.1.1/jwutil/man/asCharacterNoWarn.Rd |only jwutil-1.1.1/jwutil/man/buildLinearFormula.Rd |only jwutil-1.1.1/jwutil/man/dropDuplicateFields.Rd |only jwutil-1.1.1/jwutil/man/expandFactors.Rd |only jwutil-1.1.1/jwutil/man/factorToDataframeLogical.Rd |only jwutil-1.1.1/jwutil/man/filterBetter.Rd |only jwutil-1.1.1/jwutil/man/getFactorNames.Rd |only jwutil-1.1.1/jwutil/man/isRowSorted.Rd |only jwutil-1.1.1/jwutil/man/logicalToBinary.Rd |only jwutil-1.1.1/jwutil/man/mergeBetter.Rd |only jwutil-1.1.1/jwutil/man/read.zip.url.Rd |only jwutil-1.1.1/jwutil/tests/testthat/test-lint.R |only jwutil-1.2.1/jwutil/DESCRIPTION | 20 jwutil-1.2.1/jwutil/MD5 | 214 ++++-- jwutil-1.2.1/jwutil/NAMESPACE | 50 + jwutil-1.2.1/jwutil/R/RcppExports.R | 57 + jwutil-1.2.1/jwutil/R/as_char_no_warn.r |only jwutil-1.2.1/jwutil/R/catch-routine-registration.R |only jwutil-1.2.1/jwutil/R/char.r | 55 + jwutil-1.2.1/jwutil/R/df.r | 505 +--------------- jwutil-1.2.1/jwutil/R/dput_expect_that.r | 27 jwutil-1.2.1/jwutil/R/drop_duplicate_fields.R |only jwutil-1.2.1/jwutil/R/env.r |only jwutil-1.2.1/jwutil/R/factor_nosort.r |only jwutil-1.2.1/jwutil/R/factor_to_df_logical.r |only jwutil-1.2.1/jwutil/R/file.r |only jwutil-1.2.1/jwutil/R/filter_better.r |only jwutil-1.2.1/jwutil/R/get_factor_fields.r |only jwutil-1.2.1/jwutil/R/get_na_fields.r |only jwutil-1.2.1/jwutil/R/get_numeric_fields.r |only jwutil-1.2.1/jwutil/R/jwutil-package.r | 22 jwutil-1.2.1/jwutil/R/list.r | 45 + jwutil-1.2.1/jwutil/R/logical_to_binary.r |only jwutil-1.2.1/jwutil/R/merge_better.r |only jwutil-1.2.1/jwutil/R/read_zip_url.r |only jwutil-1.2.1/jwutil/R/testing.r | 75 +- jwutil-1.2.1/jwutil/R/to_data_raw.r |only jwutil-1.2.1/jwutil/R/update_github_pkgs.r |only jwutil-1.2.1/jwutil/R/util.r | 288 +++++---- jwutil-1.2.1/jwutil/R/zero_na.r |only jwutil-1.2.1/jwutil/README.md | 10 jwutil-1.2.1/jwutil/build |only jwutil-1.2.1/jwutil/inst |only jwutil-1.2.1/jwutil/man/add_time_to_date.Rd | 1 jwutil-1.2.1/jwutil/man/affixFields.Rd | 1 jwutil-1.2.1/jwutil/man/allIsInteger.Rd | 8 jwutil-1.2.1/jwutil/man/allIsNumeric.Rd | 5 jwutil-1.2.1/jwutil/man/areNumeric.Rd | 1 jwutil-1.2.1/jwutil/man/asNumericNoWarn.Rd | 11 jwutil-1.2.1/jwutil/man/as_char_no_warn.Rd |only jwutil-1.2.1/jwutil/man/bad_input.Rd | 3 jwutil-1.2.1/jwutil/man/binary_col_names.Rd | 7 jwutil-1.2.1/jwutil/man/build_formula.Rd |only jwutil-1.2.1/jwutil/man/combn_subset.Rd | 1 jwutil-1.2.1/jwutil/man/countIsNa.Rd | 1 jwutil-1.2.1/jwutil/man/countNonNaCumulative.Rd | 1 jwutil-1.2.1/jwutil/man/countNonNaPairs.Rd | 1 jwutil-1.2.1/jwutil/man/countNotNumeric.Rd | 1 jwutil-1.2.1/jwutil/man/countNumeric.Rd | 1 jwutil-1.2.1/jwutil/man/dput_expect_equal.Rd | 8 jwutil-1.2.1/jwutil/man/dropRowsWithNAField.Rd | 9 jwutil-1.2.1/jwutil/man/drop_duplicate_fields.Rd |only jwutil-1.2.1/jwutil/man/eine.Rd |only jwutil-1.2.1/jwutil/man/env_to_vec_flip.Rd |only jwutil-1.2.1/jwutil/man/expect_that_combine_all_args.Rd | 6 jwutil-1.2.1/jwutil/man/extreme_numbers.Rd | 3 jwutil-1.2.1/jwutil/man/factor_nosort.Rd |only jwutil-1.2.1/jwutil/man/factor_to_df_logical.Rd |only jwutil-1.2.1/jwutil/man/fastIntToString.Rd |only jwutil-1.2.1/jwutil/man/fillMissingCombs.Rd | 1 jwutil-1.2.1/jwutil/man/filter_better.Rd |only jwutil-1.2.1/jwutil/man/flattenList.Rd | 5 jwutil-1.2.1/jwutil/man/getDropped.Rd | 1 jwutil-1.2.1/jwutil/man/getNAFields.Rd | 3 jwutil-1.2.1/jwutil/man/get_factor_fields.Rd |only jwutil-1.2.1/jwutil/man/get_numeric_char_field_names.Rd |only jwutil-1.2.1/jwutil/man/grapes-nin-grapes.Rd | 1 jwutil-1.2.1/jwutil/man/invwhich.Rd | 1 jwutil-1.2.1/jwutil/man/is.Date.Rd | 1 jwutil-1.2.1/jwutil/man/isFlat.Rd | 1 jwutil-1.2.1/jwutil/man/isValidTime.Rd | 1 jwutil-1.2.1/jwutil/man/jw_df_basics.Rd |only jwutil-1.2.1/jwutil/man/jwutil-package.Rd | 17 jwutil-1.2.1/jwutil/man/listTrim.Rd | 1 jwutil-1.2.1/jwutil/man/listTrimFlat.Rd | 1 jwutil-1.2.1/jwutil/man/logical_to_binary.Rd |only jwutil-1.2.1/jwutil/man/ls.objects.Rd |only jwutil-1.2.1/jwutil/man/lsf.Rd | 1 jwutil-1.2.1/jwutil/man/lsos.Rd | 1 jwutil-1.2.1/jwutil/man/lsp.Rd | 1 jwutil-1.2.1/jwutil/man/mergeLists.Rd | 7 jwutil-1.2.1/jwutil/man/merge_better.Rd |only jwutil-1.2.1/jwutil/man/min_r_version.Rd |only jwutil-1.2.1/jwutil/man/numbers_to_long_and_float.Rd | 1 jwutil-1.2.1/jwutil/man/opt_binary_brute.Rd | 1 jwutil-1.2.1/jwutil/man/permute.Rd | 1 jwutil-1.2.1/jwutil/man/permuteWithRepeats.Rd | 1 jwutil-1.2.1/jwutil/man/platformIsLinux.Rd | 3 jwutil-1.2.1/jwutil/man/propIsNa.Rd | 1 jwutil-1.2.1/jwutil/man/propNaPerField.Rd | 3 jwutil-1.2.1/jwutil/man/propRowSorted.Rd | 1 jwutil-1.2.1/jwutil/man/random_test_dates.Rd | 7 jwutil-1.2.1/jwutil/man/random_test_numbers.Rd | 10 jwutil-1.2.1/jwutil/man/read_xlsx_linux.Rd | 1 jwutil-1.2.1/jwutil/man/read_zip_url.Rd |only jwutil-1.2.1/jwutil/man/reqinst.Rd |only jwutil-1.2.1/jwutil/man/rm_r.Rd | 1 jwutil-1.2.1/jwutil/man/save_in_data_dir.Rd | 17 jwutil-1.2.1/jwutil/man/set_attr_in_place.Rd | 1 jwutil-1.2.1/jwutil/man/shuffle.Rd | 1 jwutil-1.2.1/jwutil/man/source_purl.Rd | 9 jwutil-1.2.1/jwutil/man/strMultiMatch.Rd | 1 jwutil-1.2.1/jwutil/man/strip.Rd | 29 jwutil-1.2.1/jwutil/man/stripForFormula.Rd | 1 jwutil-1.2.1/jwutil/man/trim.Rd | 1 jwutil-1.2.1/jwutil/man/unzip_single.Rd |only jwutil-1.2.1/jwutil/man/unzip_to_data_raw.Rd |only jwutil-1.2.1/jwutil/man/update_github_pkgs.Rd |only jwutil-1.2.1/jwutil/man/vec_to_env_true.Rd |only jwutil-1.2.1/jwutil/man/zero_na.Rd | 10 jwutil-1.2.1/jwutil/man/zeroes.Rd | 5 jwutil-1.2.1/jwutil/src/Makevars |only jwutil-1.2.1/jwutil/src/Makevars.win |only jwutil-1.2.1/jwutil/src/RcppExports.cpp | 230 ++++++- jwutil-1.2.1/jwutil/src/attr.cpp | 6 jwutil-1.2.1/jwutil/src/omp.cpp |only jwutil-1.2.1/jwutil/src/omp.h |only jwutil-1.2.1/jwutil/src/registration.c |only jwutil-1.2.1/jwutil/src/rowsorted.cpp | 6 jwutil-1.2.1/jwutil/src/test-jwutil.cpp |only jwutil-1.2.1/jwutil/src/test-runner.cpp |only jwutil-1.2.1/jwutil/src/util.cpp |only jwutil-1.2.1/jwutil/src/util.h |only jwutil-1.2.1/jwutil/tests/testthat/test-cpp.R |only jwutil-1.2.1/jwutil/tests/testthat/test-df.R | 81 -- jwutil-1.2.1/jwutil/tests/testthat/test-testing.R | 8 jwutil-1.2.1/jwutil/tests/testthat/test-util.R | 62 - jwutil-1.2.1/jwutil/vignettes |only 138 files changed, 990 insertions(+), 990 deletions(-)
Title: Empirical Transition Matrix
Description: Matrix of transition probabilities for any time-inhomogeneous multistate model with finite state space.
Author: Arthur Allignol
Maintainer: Arthur Allignol <arthur.allignol@uni-ulm.de>
Diff between etm versions 0.6-2 dated 2014-12-09 and 0.6-2.1 dated 2018-06-11
DESCRIPTION | 13 +++++++++---- MD5 | 6 +++--- NAMESPACE | 3 +++ src/los_etm.cc | 4 ++-- 4 files changed, 17 insertions(+), 9 deletions(-)
Title: Multiple Imputation Using MICE and Random Forest
Description: Functions to impute using Random Forest under Full Conditional Specifications (Multivariate Imputation by Chained Equations). The CALIBER programme is funded by the Wellcome Trust (086091/Z/08/Z) and the National Institute for Health Research (NIHR) under its Programme Grants for Applied Research programme (RP-PG-0407-10314). The author is supported by a Wellcome Trust Clinical Research Training Fellowship (0938/30/Z/10/Z).
Author: Anoop Shah [aut, cre],
Jonathan Bartlett [ctb],
Harry Hemingway [ths],
Owen Nicholas [ths],
Aroon Hingorani [ths]
Maintainer: Anoop Shah <anoop@doctors.org.uk>
Diff between CALIBERrfimpute versions 0.1-6 dated 2014-05-07 and 1.0-1 dated 2018-06-11
CALIBERrfimpute-0.1-6/CALIBERrfimpute/build |only CALIBERrfimpute-0.1-6/CALIBERrfimpute/inst/doc/simstudy_survival.R |only CALIBERrfimpute-0.1-6/CALIBERrfimpute/inst/doc/simstudy_survival.Rnw |only CALIBERrfimpute-1.0-1/CALIBERrfimpute/DESCRIPTION | 15 - CALIBERrfimpute-1.0-1/CALIBERrfimpute/MD5 | 21 -- CALIBERrfimpute-1.0-1/CALIBERrfimpute/NAMESPACE | 6 CALIBERrfimpute-1.0-1/CALIBERrfimpute/NEWS | 22 ++ CALIBERrfimpute-1.0-1/CALIBERrfimpute/R/mice.impute.rfcat.R | 13 + CALIBERrfimpute-1.0-1/CALIBERrfimpute/inst/doc/simstudy_survival.pdf |binary CALIBERrfimpute-1.0-1/CALIBERrfimpute/man/CALIBERrfimpute-package.Rd | 4 CALIBERrfimpute-1.0-1/CALIBERrfimpute/man/mice.impute.rfcat.Rd | 15 - CALIBERrfimpute-1.0-1/CALIBERrfimpute/man/mice.impute.rfcont.Rd | 3 CALIBERrfimpute-1.0-1/CALIBERrfimpute/vignettes/simstudy_survival.Rnw | 95 ++++++++-- 13 files changed, 143 insertions(+), 51 deletions(-)
More information about CALIBERrfimpute at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-11 1.1-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-16 0.2.1.1
2017-05-08 0.2.1
2017-03-08 0.2
2016-11-26 0.1.10.2
2016-11-14 0.1.10
2016-09-12 0.1.9.1
Title: Diverse Cluster Ensemble in R
Description: Performs cluster analysis using an ensemble clustering framework.
Results from a diverse set of algorithms are pooled together using methods
such as majority voting, K-Modes, LinkCluE, and CSPA. There are options to
compare cluster assignments across algorithms using internal and external
indices, visualizations such as heatmaps, and significance testing for the
existence of clusters.
Author: Derek Chiu [aut, cre],
Aline Talhouk [aut],
Johnson Liu [ctb, com]
Maintainer: Derek Chiu <dchiu@bccrc.ca>
Diff between diceR versions 0.5.0 dated 2018-05-06 and 0.5.1 dated 2018-06-11
DESCRIPTION | 14 LICENSE | 4 MD5 | 136 +- NAMESPACE | 74 - NEWS.md | 128 +- R/PAC.R | 90 - R/RcppExports.R | 22 R/algorithms.R | 338 +++--- R/consensus_cluster.R | 643 ++++++------ R/consensus_combine.R | 110 +- R/consensus_evaluate.R | 702 ++++++------- R/consensus_funs.R | 286 ++--- R/consensus_matrix.R | 100 - R/data.R | 20 R/dice.R | 268 ++--- R/diceR-package.R | 16 R/external_validity.R | 176 +-- R/graphs.R | 450 ++++---- R/impute.R | 166 +-- R/pcn.R | 146 +- R/prepare_data.R | 121 +- R/sigclust.R | 234 ++-- R/similarity.R | 376 +++---- R/utils.R | 266 ++--- R/zzz.R | 8 README.md | 152 +- build/vignette.rds |binary inst/doc/overview.R | 200 +-- inst/doc/overview.Rmd | 534 +++++----- inst/doc/overview.html | 1658 ++++++++++++++++---------------- man/CSPA.Rd | 68 - man/LCE.Rd | 94 - man/PAC.Rd | 102 - man/compactness.Rd | 78 - man/consensus_cluster.Rd | 305 ++--- man/consensus_combine.Rd | 92 - man/consensus_evaluate.Rd | 172 +-- man/consensus_matrix.Rd | 106 +- man/dice.Rd | 236 ++-- man/diceR-package.Rd | 78 - man/external_validity.Rd | 118 +- man/graphs.Rd | 164 +-- man/hgsc.Rd | 36 man/impute_knn.Rd | 80 - man/impute_missing.Rd | 102 - man/k_modes.Rd | 90 - man/majority_voting.Rd | 84 - man/min_fnorm.Rd | 78 - man/pcn.Rd | 106 +- man/prepare_data.Rd | 99 - man/relabel_class.Rd | 58 - man/sigclust.Rd | 116 +- man/similarity.Rd | 90 - tests/testthat.R | 8 tests/testthat/test-PAC.R | 26 tests/testthat/test-consensus_cluster.R | 108 +- tests/testthat/test-consensus_combine.R | 110 +- tests/testthat/test-consensus_funs.R | 100 - tests/testthat/test-consensus_matrix.R | 64 - tests/testthat/test-dice.R | 112 +- tests/testthat/test-external_validity.R | 30 tests/testthat/test-graphs.R | 104 +- tests/testthat/test-impute.R | 52 - tests/testthat/test-pcn.R | 26 tests/testthat/test-prepare_data.R | 34 tests/testthat/test-sigclust.R | 54 - tests/testthat/test-similarity.R | 94 - tests/testthat/test-utils.R | 68 - vignettes/overview.Rmd | 534 +++++----- 69 files changed, 5758 insertions(+), 5756 deletions(-)
Title: Markov Model for the Online Multi-Channel Attribution Problem
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. This is called the online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identify structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare, David Loris
Maintainer: Davide Altomare <davide.altomare@gmail.com>
Diff between ChannelAttribution versions 1.12 dated 2018-02-05 and 1.13 dated 2018-06-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/ChannelAttribution.cpp | 25 +++++++++++-------------- 3 files changed, 17 insertions(+), 20 deletions(-)
More information about ChannelAttribution at CRAN
Permanent link
Title: Sensitivity Indices with Dependent Inputs
Description: Sensitivity indices with dependent correlated inputs, using a
method based on PLS regression.
Author: A. Bouvier [aut], J.-P. Gauchi [aut, cre], E. Volatier [ctb]
Maintainer: ORPHANED
Diff between sivipm versions 1.1-3 dated 2016-01-13 and 1.1-4 dated 2018-06-11
DESCRIPTION | 13 ++++++++----- MD5 | 8 ++++---- src/bouclen.c | 16 ++++++++++++++++ tests/exX18Y2.Rout.save | 40 ++++++++++++++++++++++++++++++++++++---- tests/excornell0.Rout.save | 20 ++++++++++++++++---- 5 files changed, 80 insertions(+), 17 deletions(-)
Title: Datasets for 'spatstat'
Description: Contains all the datasets for the 'spatstat' package.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.data versions 1.2-0 dated 2017-11-19 and 1.3-1 dated 2018-06-11
DESCRIPTION | 10 +- MD5 | 124 +++++++++++++++---------------- data/Kovesi.rda |binary data/amacrine.rda |binary data/anemones.rda |binary data/ants.rda |binary data/austates.rda |binary data/bdspots.rda |binary data/bei.rda |binary data/betacells.rda |binary data/bramblecanes.rda |binary data/bronzefilter.rda |binary data/cells.rda |binary data/cetaceans.rda |binary data/chicago.rda |binary data/chorley.rda |binary data/clmfires.rda |binary data/copper.rda |binary data/demohyper.rda |binary data/demopat.rda |binary data/dendrite.rda |binary data/finpines.rda |binary data/flu.rda |binary data/ganglia.rda |binary data/gordon.rda |binary data/gorillas.rda |binary data/hamster.rda |binary data/heather.rda |binary data/humberside.rda |binary data/hyytiala.rda |binary data/japanesepines.rda |binary data/lansing.rda |binary data/letterR.rda |binary data/longleaf.rda |binary data/mucosa.rda |binary data/murchison.rda |binary data/nbfires.rda |binary data/nztrees.rda |binary data/osteo.rda |binary data/paracou.rda |binary data/ponderosa.rda |binary data/pyramidal.rda |binary data/redwood.rda |binary data/redwood3.rda |binary data/redwoodfull.rda |binary data/residualspaper.rda |binary data/shapley.rda |binary data/simba.rda |binary data/simdat.rda |binary data/simplenet.rda |binary data/spiders.rda |binary data/sporophores.rda |binary data/spruces.rda |binary data/swedishpines.rda |binary data/urkiola.rda |binary data/vesicles.rda |binary data/waka.rda |binary data/waterstriders.rda |binary inst/doc/packagesizes.txt | 2 inst/rawdata/vesicles/vesicleswindow.csv | 8 +- inst/rawdata/vesicles/vesicleswindow.txt | 8 +- man/cetaceans.Rd | 2 man/macros/defns.Rd | 2 63 files changed, 78 insertions(+), 78 deletions(-)
Title: Psychometric Meta-Analysis Toolkit
Description: Tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Includes tools for converting effect sizes, computing sporadic artifact corrections, reshaping meta-analytic databases, computing multivariate corrections for range variation, and more. Bugs can be reported to <https://github.com/psychmeta/psychmeta/issues> or <issues@psychmeta.com>.
Author: Jeffrey A. Dahlke [aut, cre],
Brenton M. Wiernik [aut],
Michael T. Brannick [ctb] (Testing),
Jack Kostal [ctb] (Code for reshape_mat2dat function),
Sean Potter [ctb] (Testing; Code for cumulative and leave1out plots),
John Sakaluk [ctb] (Code for funnel and forest plots),
Yuejia (Mandy) Teng [ctb] (Testing)
Maintainer: Jeffrey A. Dahlke <dahlk068@umn.edu>
Diff between psychmeta versions 1.0.2 dated 2018-05-01 and 2.1.1 dated 2018-06-11
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Title: Tumor Mutation Detection in Plasma
Description: Aims at detecting single nucleotide variation
(SNV) and insertion/deletion (INDEL) in circulating tumor DNA (ctDNA), used
as a surrogate marker for tumor, at each base position of an Next Generation
Sequencing (NGS) analysis. Mutations are assessed by comparing the minor-allele
frequency at each position to the measured PER in control samples.
Author: Yves Rozenholc, Nicolas Pécuchet, Pierre Laurent-Puig
Maintainer: Yves Rozenholc <yves.rozenholc@parisdescartes.fr>
Diff between PlasmaMutationDetector versions 1.7.1 dated 2018-05-15 and 1.7.2 dated 2018-06-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/functions.R | 23 ++++++++++++++--------- man/PrepareLibrary.Rd | 5 +++-- 4 files changed, 23 insertions(+), 17 deletions(-)
More information about PlasmaMutationDetector at CRAN
Permanent link
Title: Fitting an Interval Response Variable Using `gamlss.family'
Distributions
Description: This is an add-on package to GAMLSS. The purpose of this
package is to allow users to fit interval response variables in
GAMLSS models. The main function gen.cens() generates a
censored version of an existing GAMLSS family distribution.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>, Bob
Rigby, Nicoleta Mortan
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.cens versions 4.3-5 dated 2016-05-18 and 5.0-1 dated 2018-06-11
DESCRIPTION | 10 ++--- MD5 | 15 ++++---- NAMESPACE | 2 - R/cens.R | 76 ++++++++++++++++++++++----------------------- build |only data/lip.rda |binary man/cens.d.Rd | 2 - man/gamlss.cens-package.Rd | 34 ++++++++------------ man/gen.cens.Rd | 2 - 9 files changed, 69 insertions(+), 72 deletions(-)
Title: Cluster Evaluation
Description: CLUster Evaluation (CLUE) is a computational method for identifying
optimal number of clusters in a given time-course dataset clustered by
cmeans or kmeans algorithms and subsequently identify key kinases or
pathways from each cluster. Its implementation in R is called ClueR.
See README on <https://github.com/PengyiYang/ClueR> for more details.
P Yang et al. <10.1371/journal.pcbi.1004403>.
Author: Pengyi Yang
Maintainer: Pengyi Yang <yangpy7@gmail.com>
Diff between ClueR versions 1.2 dated 2017-04-30 and 1.3 dated 2018-06-11
DESCRIPTION | 17 +- MD5 | 54 ++++---- NAMESPACE | 24 +-- R/clustEnrichment.R | 184 +++++++++++++-------------- R/clustOptimal.R | 200 +++++++++++++++-------------- R/enrichmentTest.R | 66 ++++----- R/fuzzPlot.R | 177 +++++++++++++------------- R/runClue.R | 314 +++++++++++++++++++++++------------------------ R/temporalSimu.R | 176 +++++++++++++------------- README.md | 274 ++++++++++++++++++++--------------------- data/adipocyte.rda |only data/datalist | 9 - man/ClueR-package.Rd | 81 ++++++------ man/Pathways.DAVID.Rd | 14 +- man/Pathways.KEGG.Rd | 14 +- man/Pathways.biocarta.Rd | 14 +- man/Pathways.reactome.Rd | 14 +- man/PhosphoELM.human.Rd | 12 - man/PhosphoELM.mouse.Rd | 12 - man/PhosphoSite.human.Rd | 16 +- man/PhosphoSite.mouse.Rd | 16 +- man/adipocyte.Rd |only man/clustEnrichment.Rd | 105 +++++++-------- man/clustOptimal.Rd | 128 ++++++++++--------- man/enrichmentTest.Rd | 48 +++---- man/fuzzPlot.Rd | 75 +++++------ man/hES.Rd | 18 +- man/runClue.Rd | 224 +++++++++++++++++---------------- man/temporalSimu.Rd | 60 ++++---- 29 files changed, 1187 insertions(+), 1159 deletions(-)
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Jeff Allen [ctb],
Roy Storey [ctb],
Rob Hyndman [ctb],
Ruben Arslan [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
RStudio, Inc. [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/rmd/h/jqueryui-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Greg Franko [ctb, cph] (tocify library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library),
Dave Gandy [ctb, cph] (Font-Awesome),
Ben Sperry [ctb] (Ionicons),
Drifty [cph] (Ionicons),
Aidan Lister [ctb, cph] (jQuery StickyTabs)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 1.9 dated 2018-03-01 and 1.10 dated 2018-06-11
rmarkdown-1.10/rmarkdown/DESCRIPTION | 17 rmarkdown-1.10/rmarkdown/MD5 | 157 +++---- rmarkdown-1.10/rmarkdown/NAMESPACE | 5 rmarkdown-1.10/rmarkdown/R/beamer_presentation.R | 36 - rmarkdown-1.10/rmarkdown/R/draft.R | 18 rmarkdown-1.10/rmarkdown/R/github_document.R | 9 rmarkdown-1.10/rmarkdown/R/html_dependencies.R | 31 - rmarkdown-1.10/rmarkdown/R/html_document.R | 57 +- rmarkdown-1.10/rmarkdown/R/html_document_base.R | 4 rmarkdown-1.10/rmarkdown/R/html_fragment.R | 10 rmarkdown-1.10/rmarkdown/R/html_notebook.R | 19 rmarkdown-1.10/rmarkdown/R/html_notebook_output.R | 20 rmarkdown-1.10/rmarkdown/R/html_paged.R | 30 - rmarkdown-1.10/rmarkdown/R/html_resources.R | 104 +++-- rmarkdown-1.10/rmarkdown/R/html_vignette.R | 7 rmarkdown-1.10/rmarkdown/R/includes.R | 28 - rmarkdown-1.10/rmarkdown/R/md_document.R | 32 - rmarkdown-1.10/rmarkdown/R/odt_document.R | 29 - rmarkdown-1.10/rmarkdown/R/output_format.R | 205 +++++----- rmarkdown-1.10/rmarkdown/R/pandoc.R | 163 +++++-- rmarkdown-1.10/rmarkdown/R/pdf_document.R | 82 ++-- rmarkdown-1.10/rmarkdown/R/powerpoint_presentation.R | 11 rmarkdown-1.10/rmarkdown/R/render.R | 10 rmarkdown-1.10/rmarkdown/R/render_site.R | 97 ++-- rmarkdown-1.10/rmarkdown/R/rtf_document.R | 27 - rmarkdown-1.10/rmarkdown/R/shiny.R | 128 +++--- rmarkdown-1.10/rmarkdown/R/shiny_prerendered.R | 3 rmarkdown-1.10/rmarkdown/R/slidy_presentation.R | 24 - rmarkdown-1.10/rmarkdown/R/tufte_handout.R | 40 + rmarkdown-1.10/rmarkdown/R/util.R | 167 -------- rmarkdown-1.10/rmarkdown/R/word_document.R | 26 - rmarkdown-1.10/rmarkdown/inst/NEWS | 28 + rmarkdown-1.10/rmarkdown/inst/rmd/h/default.html | 3 rmarkdown-1.10/rmarkdown/inst/rmd/h/fontawesome |only rmarkdown-1.10/rmarkdown/inst/rmd/h/rmarkdown/rmd_loader.gif |binary rmarkdown-1.10/rmarkdown/inst/rmd/ioslides/ioslides_presentation.lua | 2 rmarkdown-1.10/rmarkdown/inst/rmd/latex/default-1.14.tex | 15 rmarkdown-1.10/rmarkdown/inst/rmd/latex/default-1.15.2.tex | 15 rmarkdown-1.10/rmarkdown/inst/rmd/latex/default-1.17.0.2.tex | 15 rmarkdown-1.10/rmarkdown/inst/rmd/latex/default.tex | 15 rmarkdown-1.10/rmarkdown/man/all_output_formats.Rd | 2 rmarkdown-1.10/rmarkdown/man/beamer_presentation.Rd | 6 rmarkdown-1.10/rmarkdown/man/draft.Rd | 9 rmarkdown-1.10/rmarkdown/man/find_external_resources.Rd | 50 +- rmarkdown-1.10/rmarkdown/man/github_document.Rd | 7 rmarkdown-1.10/rmarkdown/man/html-dependencies.Rd | 2 rmarkdown-1.10/rmarkdown/man/html_document.Rd | 10 rmarkdown-1.10/rmarkdown/man/html_document_base.Rd | 2 rmarkdown-1.10/rmarkdown/man/html_fragment.Rd | 2 rmarkdown-1.10/rmarkdown/man/html_notebook.Rd | 5 rmarkdown-1.10/rmarkdown/man/html_notebook_output.Rd | 5 rmarkdown-1.10/rmarkdown/man/html_vignette.Rd | 6 rmarkdown-1.10/rmarkdown/man/includes.Rd | 10 rmarkdown-1.10/rmarkdown/man/knitr_options.Rd | 4 rmarkdown-1.10/rmarkdown/man/knitr_options_pdf.Rd | 3 rmarkdown-1.10/rmarkdown/man/md_document.Rd | 2 rmarkdown-1.10/rmarkdown/man/odt_document.Rd | 6 rmarkdown-1.10/rmarkdown/man/output_format.Rd | 9 rmarkdown-1.10/rmarkdown/man/paged_table.Rd | 4 rmarkdown-1.10/rmarkdown/man/pandoc_args.Rd | 10 rmarkdown-1.10/rmarkdown/man/pandoc_citeproc_convert.Rd |only rmarkdown-1.10/rmarkdown/man/pandoc_convert.Rd | 15 rmarkdown-1.10/rmarkdown/man/pandoc_options.Rd | 4 rmarkdown-1.10/rmarkdown/man/pandoc_path_arg.Rd | 6 rmarkdown-1.10/rmarkdown/man/parse_html_notebook.Rd | 7 rmarkdown-1.10/rmarkdown/man/pdf_document.Rd | 6 rmarkdown-1.10/rmarkdown/man/powerpoint_presentation.Rd | 16 rmarkdown-1.10/rmarkdown/man/render_delayed.Rd | 10 rmarkdown-1.10/rmarkdown/man/render_site.Rd | 9 rmarkdown-1.10/rmarkdown/man/resolve_output_format.Rd | 2 rmarkdown-1.10/rmarkdown/man/rmarkdown_format.Rd | 9 rmarkdown-1.10/rmarkdown/man/rtf_document.Rd | 5 rmarkdown-1.10/rmarkdown/man/run.Rd | 60 +- rmarkdown-1.10/rmarkdown/man/site_resources.Rd |only rmarkdown-1.10/rmarkdown/man/slidy_presentation.Rd | 9 rmarkdown-1.10/rmarkdown/man/tufte_handout.Rd | 15 rmarkdown-1.10/rmarkdown/man/word_document.Rd | 6 rmarkdown-1.9/rmarkdown/inst/rmd/h/font-awesome-4.5.0 |only 78 files changed, 1021 insertions(+), 1001 deletions(-)
Title: Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Files
Description: Provide R functions to read/write/format Excel 2007 and Excel 97/2000/XP/2003 file formats.
Author: Adrian A. Dragulescu, Cole Arendt
Maintainer: Adrian A. Dragulescu <adrian.dragulescu@gmail.com>
Diff between xlsx versions 0.5.7 dated 2014-08-02 and 0.6.1 dated 2018-06-11
DESCRIPTION | 19 +-- MD5 | 59 +++++----- NAMESPACE | 5 NEWS | 21 +++ R/Cell.R | 3 R/CellStyle.R | 1 R/ExcelConstants.R |only R/Font.R | 2 R/Workbook.R | 53 ++++++++- R/addDataFrame.R | 9 + R/autoRefresh.R |only R/read.xlsx.R | 7 - R/read.xlsx2.R | 36 +++--- R/readColumns.R | 2 R/utilities.R | 103 ------------------ R/write.xlsx.R | 7 - R/write.xlsx2.R | 7 - README.md |only build/vignette.rds |binary inst/doc/xlsx.Rnw | 2 inst/doc/xlsx.pdf |binary inst/tests/lib_test_issues.R | 245 ++++++++++++++++++++++++++++++------------- java |only man/CellBlock.Rd | 3 man/NamedRanges.Rd | 13 -- man/Row.Rd | 5 man/Sheet.Rd | 2 man/Workbook.Rd | 13 +- man/autoRefresh.Rd |only man/read.xlsx.Rd | 7 - man/write.xlsx.Rd | 9 + man/xlsx-package.Rd | 7 - vignettes/xlsx.Rnw | 2 33 files changed, 368 insertions(+), 274 deletions(-)
Title: Detecting Politeness Features in Text
Description: Detecting markers of politeness in English natural language. This package allows researchers to easily visualize and quantify politeness between groups of documents. This package combines prior research on the linguistic markers of politeness (Brown & Levinson, 1987 <http://psycnet.apa.org/record/1987-97641-000>; Danescu-Niculescu-Mizil et al., 2013 <arXiv:1306.6078>; Voigt et al., 2017 <doi:10.1073/pnas.1702413114>). We thank the Spencer Foundation, the Hewlett Foundation, and Harvard's Institute for Quantitative Social Science for support.
Author: Mike Yeomans, Alejandro Kantor, Dustin Tingley
Maintainer: Mike Yeomans <yeomans@fas.harvard.edu>
Diff between politeness versions 0.2.2 dated 2018-02-15 and 0.2.4 dated 2018-06-11
DESCRIPTION | 6 +-- MD5 | 22 +++++++------- R/politeness.R | 49 +++++++++++++++++++++---------- R/politenessPlot.R | 10 ++++-- build/vignette.rds |binary inst/doc/politeness.R | 4 +- inst/doc/politeness.Rmd | 8 ++--- inst/doc/politeness.html | 28 +++++++++--------- man/politeness.Rd | 12 ++++--- tests/testthat/test-politeness.R | 54 ++++++++++++++++++++++++----------- tests/testthat/test-politenessPlot.R | 2 - vignettes/politeness.Rmd | 8 ++--- 12 files changed, 124 insertions(+), 79 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-27 0.1.0