Title: An Implementation of the Artificial Hydrocarbon Networks
Description: Implementation of the Artificial Hydrocarbon Networks for data
modeling.
Author: Jose Roberto Ayala Solares [aut, cre]
Maintainer: Jose Roberto Ayala Solares <ichbinjras@gmail.com>
Diff between ahnr versions 0.2.0 dated 2017-08-18 and 0.3.0 dated 2018-06-16
ahnr-0.2.0/ahnr/man/AHNnD.Rd |only ahnr-0.2.0/ahnr/man/SimAHNnD.Rd |only ahnr-0.3.0/ahnr/DESCRIPTION | 6 ahnr-0.3.0/ahnr/MD5 | 34 ++--- ahnr-0.3.0/ahnr/NAMESPACE | 8 - ahnr-0.3.0/ahnr/NEWS.md | 12 + ahnr-0.3.0/ahnr/R/ahn_main.R | 250 ++++++++++++++++++++++--------------- ahnr-0.3.0/ahnr/R/auxiliary.R | 18 +- ahnr-0.3.0/ahnr/R/generics.R |only ahnr-0.3.0/ahnr/build/vignette.rds |binary ahnr-0.3.0/ahnr/inst/doc/ahn.R | 34 ++--- ahnr-0.3.0/ahnr/inst/doc/ahn.Rmd | 34 ++--- ahnr-0.3.0/ahnr/inst/doc/ahn.html | 175 +++++++++++++------------ ahnr-0.3.0/ahnr/man/figures |only ahnr-0.3.0/ahnr/man/fit.Rd |only ahnr-0.3.0/ahnr/man/is.ahn.Rd |only ahnr-0.3.0/ahnr/man/plot.Rd |only ahnr-0.3.0/ahnr/man/plot.ahn.Rd | 43 ------ ahnr-0.3.0/ahnr/man/predict.Rd |only ahnr-0.3.0/ahnr/man/predict.ahn.Rd |only ahnr-0.3.0/ahnr/man/summary.Rd |only ahnr-0.3.0/ahnr/man/summary.ahn.Rd | 9 - ahnr-0.3.0/ahnr/vignettes/ahn.Rmd | 34 ++--- 23 files changed, 355 insertions(+), 302 deletions(-)
Title: Maximum Likelihood Models for Species Abundance Distributions
Description: Maximum likelihood tools to fit and compare models of species
abundance distributions and of species rank-abundance distributions.
Author: Paulo I. Prado, Murilo Dantas Miranda and Andre Chalom
Maintainer: Paulo I. Prado <prado@ib.usp.br>
Diff between sads versions 0.4.1 dated 2017-10-24 and 0.4.2 dated 2018-06-16
DESCRIPTION | 8 +-- MD5 | 29 ++++++------- NEWS | 7 +++ R/fitgeom.R | 2 R/fitnbinom.R | 2 R/fitpoilog.R | 4 - R/rsad.R | 102 +++++++++++++++++++++++++---------------------- R/sads-methods.R | 8 +-- build/partial.rdb |only build/vignette.rds |binary inst/doc/sads_intro.R | 2 inst/doc/sads_intro.Rnw | 2 inst/doc/sads_intro.pdf |binary man/rsad.Rd | 24 +++++++---- man/sads-package.Rd | 50 ++++++++++++++--------- vignettes/sads_intro.Rnw | 2 16 files changed, 139 insertions(+), 103 deletions(-)
Title: Judd & McClelland Formatting for ANOVA Output
Description: Produces ANOVA tables in the format used by Judd, McClelland, and Ryan (2017, ISBN:978-1138819832) in their introductory textbook, Data Analysis. This includes proportional reduction in error and formatting to improve ease the transition between the book and R.
Author: Jim Stigler [cre, aut],
Jeff Chrabaszcz [aut]
Maintainer: Jim Stigler <jstigler@gmail.com>
Diff between supernova versions 1.0 dated 2018-02-23 and 1.1 dated 2018-06-16
DESCRIPTION | 8 MD5 | 20 + NAMESPACE | 13 + R/functions.R | 572 ++++++++++++++++++++++++++++++------------------- data/Fingers.messy.rda |binary data/Fingers.rda |binary data/Servers.rda |binary data/Survey.rda |binary data/TipExperiment.rda |binary man/PRE.Rd |only man/b0.Rd |only man/b1.Rd |only man/fVal.Rd |only 13 files changed, 387 insertions(+), 226 deletions(-)
Title: Preprocessing Tools to Create Design Matrices
Description: An extensible framework to create and preprocess
design matrices. Recipes consist of one or more data manipulation
and analysis "steps". Statistical parameters for the steps can
be estimated from an initial data set and then applied to
other data sets. The resulting design matrices can then be used
as inputs into statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between recipes versions 0.1.2 dated 2018-01-11 and 0.1.3 dated 2018-06-16
DESCRIPTION | 12 - MD5 | 211 ++++++++++++--------- NAMESPACE | 36 +++ NEWS.md | 55 +++++ R/BoxCox.R | 2 R/YeoJohnson.R | 2 R/bin2factor.R | 10 - R/bs.R | 4 R/center.R | 3 R/classdist.R | 4 R/corr.R | 2 R/data.R | 47 ++-- R/date.R | 2 R/depth.R | 4 R/discretize.R | 11 - R/dummy.R | 118 +++++++++--- R/holiday.R | 4 R/hyperbolic.R | 4 R/ica.R | 3 R/interactions.R | 44 ++-- R/intercept.R | 11 + R/inverse.R |only R/invlogit.R | 2 R/isomap.R | 3 R/kpca.R | 3 R/lag.R |only R/lincombo.R | 3 R/log.R | 68 ++++++ R/logit.R | 2 R/lowerimpute.R | 26 +- R/meanimpute.R | 4 R/misc.R | 156 ++++++++++++---- R/naomit.R |only R/ns.R | 4 R/num2factor.R | 23 -- R/other.R | 56 +++-- R/pca.R | 3 R/pls.R |only R/poly.R | 3 R/range.R | 8 R/range_check.R |only R/ratio.R | 2 R/recipe.R | 61 ++++-- R/relu.R | 38 +++ R/rollimpute.R |only R/scale.R | 2 R/selections.R | 65 ------ R/spatialsign.R | 2 R/sqrt.R | 6 R/steps_and_checks.R | 10 - R/string2factor.R | 5 R/tidy.R | 36 --- build/vignette.rds |binary data/okc.RData |binary inst/doc/Custom_Steps.R | 24 +- inst/doc/Custom_Steps.Rmd | 24 +- inst/doc/Custom_Steps.html | 82 ++++---- inst/doc/Dummies.R | 48 ++++ inst/doc/Dummies.Rmd | 83 +++++++- inst/doc/Dummies.html | 219 +++++++++++++++------- inst/doc/Ordering.html | 2 inst/doc/Selecting_Variables.html | 24 +- inst/doc/Simple_Example.R | 60 +++--- inst/doc/Simple_Example.Rmd | 114 ++++++----- inst/doc/Simple_Example.html | 311 ++++++++++++++++---------------- inst/doc/Skipping.html | 26 +- man/bake.Rd | 12 - man/check_range.Rd |only man/detect_step.Rd |only man/fully_trained.Rd |only man/juice.Rd | 12 - man/okc.Rd | 3 man/recipes-internal.Rd | 53 +++++ man/step.Rd | 6 man/step_bin2factor.Rd | 5 man/step_dummy.Rd | 38 +++ man/step_intercept.Rd | 3 man/step_inverse.Rd |only man/step_lag.Rd |only man/step_log.Rd | 25 ++ man/step_naomit.Rd |only man/step_num2factor.Rd | 4 man/step_other.Rd | 12 + man/step_pls.Rd |only man/step_range.Rd | 4 man/step_relu.Rd | 9 man/step_rollimpute.Rd |only man/tidy.recipe.Rd | 2 tests/testthat/test-basics.R | 69 ++++++- tests/testthat/test_bin2factor.R | 9 tests/testthat/test_center_scale.R | 20 +- tests/testthat/test_data.frame.R |only tests/testthat/test_discretized.R | 27 ++ tests/testthat/test_dummies.R | 106 ++++++++++ tests/testthat/test_formula.R | 2 tests/testthat/test_grouped_df.R |only tests/testthat/test_intercept.R | 3 tests/testthat/test_inverse.R |only tests/testthat/test_lag.R |only tests/testthat/test_log.R | 23 ++ tests/testthat/test_naomit.R |only tests/testthat/test_novel.R | 3 tests/testthat/test_other.R | 62 ++++-- tests/testthat/test_pls.R |only tests/testthat/test_profile.R | 56 ++--- tests/testthat/test_range_check.R |only tests/testthat/test_relu.R | 26 +- tests/testthat/test_retraining.R | 77 ++++++- tests/testthat/test_roles.R | 11 + tests/testthat/test_rollimpute.R |only tests/testthat/test_select_terms.R | 6 tests/testthat/test_skipping.R | 12 - tests/testthat/test_tidy.R | 2 vignettes/Custom_Steps.Rmd | 24 +- vignettes/Dummies.Rmd | 83 +++++++- vignettes/Simple_Example.Rmd | 114 ++++++----- vignettes/articles/Multivariate_PLS.Rmd |only vignettes/articles/Subsampling.Rmd | 2 118 files changed, 2126 insertions(+), 996 deletions(-)
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol for R. The Language Server protocol is used by an editor client to integrate features like auto completion. See <https://microsoft.github.io/language-server-protocol> for details.
Author: Randy Lai
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.2.2 dated 2018-05-09 and 0.2.3 dated 2018-06-16
DESCRIPTION | 8 ++-- MD5 | 13 ++++---- NEWS.md |only R/completion.R | 85 +++++++++++++++++++++-------------------------------- R/document.R | 12 ++++++- R/languageserver.R | 1 R/workspace.R | 7 ++-- README.md | 30 +++++++++++++----- 8 files changed, 82 insertions(+), 74 deletions(-)
More information about languageserver at CRAN
Permanent link
Title: Fluid Data Transformations
Description: Supplies higher-order fluid data transform operators that include pivot and anti-pivot as special cases.
The methodology is describe in 'Zumel', 2018, "Fluid data reshaping with 'cdata'", <http://winvector.github.io/FluidData/FluidDataReshapingWithCdata.html> , doi:10.5281/zenodo.1173299 .
Based on the 'DBI' database interface.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between cdata versions 0.7.0 dated 2018-04-09 and 0.7.1 dated 2018-06-16
cdata-0.7.0/cdata/man/cols.Rd |only cdata-0.7.1/cdata/DESCRIPTION | 11 +++--- cdata-0.7.1/cdata/MD5 | 41 ++++++++++++------------- cdata-0.7.1/cdata/NAMESPACE | 14 ++++++-- cdata-0.7.1/cdata/NEWS.md | 7 ++++ cdata-0.7.1/cdata/R/LocalOps.R | 4 +- cdata-0.7.1/cdata/R/RowsColsQ.R | 15 +++------ cdata-0.7.1/cdata/R/RowsColumns.R | 14 ++++---- cdata-0.7.1/cdata/R/package.R | 2 - cdata-0.7.1/cdata/R/rexport.R |only cdata-0.7.1/cdata/README.md | 7 ---- cdata-0.7.1/cdata/build/vignette.rds |binary cdata-0.7.1/cdata/inst/doc/FrameTools.html | 32 +++++++++---------- cdata-0.7.1/cdata/inst/doc/cdata.html | 6 +-- cdata-0.7.1/cdata/man/blocks_to_rowrecs.Rd | 2 - cdata-0.7.1/cdata/man/blocks_to_rowrecs_q.Rd | 2 - cdata-0.7.1/cdata/man/build_pivot_control.Rd | 2 - cdata-0.7.1/cdata/man/build_pivot_control_q.Rd | 2 - cdata-0.7.1/cdata/man/pivot_to_rowrecs.Rd | 5 +-- cdata-0.7.1/cdata/man/qlook.Rd | 2 - cdata-0.7.1/cdata/man/reexports.Rd |only cdata-0.7.1/cdata/man/rowrecs_to_blocks_q.Rd | 2 - cdata-0.7.1/cdata/man/unpivot_to_blocks.Rd | 7 +--- 23 files changed, 92 insertions(+), 85 deletions(-)
Title: Index of Local Sensitivity to Nonignorability
Description: The current version provides functions to compute, print and summarize the Index of Sensitivity to Nonignorability (ISNI) in the generalized linear model for independent data, and in the marginal multivariate Gaussian model and the linear mixed model for longitudinal/clustered data. It allows for arbitrary patterns of missingness in the regression outcomes caused by dropout and/or intermittent missingness. One can compute the sensitivity index without estimating any nonignorable models or positing specific magnitude of nonignorability. Thus ISNI provides a simple quantitative assessment of how robust the standard estimates assuming missing at random is with respect to the assumption of ignorability. For a tutorial, download at <http://huixie.people.uic.edu/Research/ISNI_R_tutorial.pdf>. For more details, see Troxel Ma and Heitjan (2004) and Xie and Heitjan (2004) <doi:10.1191/1740774504cn005oa> and Ma Troxel and Heitjan (2005) <doi:10.1002/sim.2107> and Xie (2008) <doi:10.1002/sim.3117> and Xie (2012) <doi:10.1016/j.csda.2010.11.021> and Xie and Qian (2012) <doi:10.1002/jae.1157>.
Author: Hui Xie <huixie@uic.edu>, Weihua Gao, Baodong Xing, Daniel Heitjan, Donald Hedeker, Chengbo Yuan
Maintainer: Hui Xie <huixie@uic.edu>
Diff between isni versions 0.2 dated 2018-04-09 and 0.3 dated 2018-06-16
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/isniglm.R | 6 +++++- R/isnilmm.R | 13 +++++++++++-- R/isnimgm.R | 24 +++++++++++++++++------- inst/doc/isni_vignette.html | 30 +++++++++++++++++------------- man/isnimgm.Rd | 2 +- 7 files changed, 60 insertions(+), 33 deletions(-)
Title: General Purpose Hierarchical Data Structure
Description: Create tree structures from hierarchical data, and traverse the
tree in various orders. Aggregate, cumulate, print, plot, convert to and from
data.frame and more. Useful for decision trees, machine learning, finance,
conversion from and to JSON, and many other applications.
Author: Facundo Munoz [ctb] (improve list conversion),
Markus Wamser [ctb] (fixed some typos),
Pierre Formont [ctb] (additional features),
Kent Russel [ctb] (documentation),
Noam Ross [ctb] (fixes),
Duncan Garmonsway [ctb] (fixes),
Christoph Glur [aut, cre] (R interface)
Maintainer: Christoph Glur <christoph.glur@ipub.com>
Diff between data.tree versions 0.7.5 dated 2018-03-06 and 0.7.6 dated 2018-06-16
DESCRIPTION | 10 +++---- MD5 | 16 +++++------ NEWS | 6 ++++ R/node_conversion_dataframe.R | 9 +++++- R/node_plot.R | 12 ++++++-- build/vignette.rds |binary inst/doc/applications.html | 57 ++++++++++++++++++++++-------------------- inst/doc/data.tree.html | 21 ++++++++------- man/ToDiagrammeRGraph.Rd | 4 ++ 9 files changed, 82 insertions(+), 53 deletions(-)
Title: Calculates Disproportionate Impact When Binary Success Data are
Disaggregated by Subgroups
Description: Implements methods for calculating disproportionate impact: the percentage point gap, proportionality index, and the 80% index.
California Community Colleges Chancellor's Office (2017). Percentage Point Gap Method. <http://extranet.cccco.edu/Portals/1/TRIS/Research/Analysis/PercentagePointGapMethod2017.pdf>.
California Community Colleges Chancellor's Office (2014). Guidelines for Measuring Disproportionate Impact in Equity Plans. <http://extranet.cccco.edu/Portals/1/TRIS/Research/Accountability/GUIDELINES%20FOR%20MEASURING%20DISPROPORTIONATE%20IMPACT%20IN%20EQUITY%20PLANS.pdf>.
Author: Vinh Nguyen [aut, cre]
Maintainer: Vinh Nguyen <nguyenvq714@gmail.com>
Diff between DisImpact versions 0.0.1 dated 2018-05-27 and 0.0.2 dated 2018-06-16
DESCRIPTION | 8 ++- MD5 | 24 +++++------ R/80_percent_index.R | 22 ++++++++-- R/percentage_point_gap.R | 34 ++++++++++------ R/proportionality_index.R | 22 ++++++++-- README.md | 2 inst/doc/Tutorial.R | 4 + inst/doc/Tutorial.Rmd | 8 +++ inst/doc/Tutorial.html | 97 +++++++++++++++++++++++++++++----------------- man/di_80_index.Rd | 6 +- man/di_ppg.Rd | 10 ++-- man/di_prop_index.Rd | 6 +- vignettes/Tutorial.Rmd | 8 +++ 13 files changed, 170 insertions(+), 81 deletions(-)
Title: Global Surface Summary of the Day (GSOD) Weather Data from R
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day (GSOD) weather data from
the from the USA National Centers for Environmental Information (NCEI) for
use in R. Units are converted from from United States Customary System
(USCS) units to International System of Units (SI). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure (es), actual
vapour pressure (ea) and relative humidity are calculated from the original
data and included in the final data set. The resulting data include station
identification information, state, country, latitude, longitude, elevation,
weather observations and associated flags. Data may be automatically saved
to disk. File output may be returned as a comma-separated values (CSV) or
GeoPackage (GPKG) file. Additional data are included with this R package: a
list of elevation values for stations between -60 and 60 degrees latitude
derived from the Shuttle Radar Topography Measuring Mission (SRTM). For
information on the GSOD data from NCEI, please see the GSOD readme.txt file
available from, <http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Tomislav Hengl [aut] (<https://orcid.org/0000-0002-9921-5129>),
Andrew Nelson [aut] (<https://orcid.org/0000-0002-7249-3778>),
Hugh Parsonage [cph, ctb] (<https://orcid.org/0000-0003-4055-0835>),
Bob Rudis [cph, ctb] (<https://orcid.org/0000-0001-5670-2640>),
Gwenael Giboire [ctb] (Several bug reports in early versions and
testing feedback),
Łukasz Pawlik [ctb] (Reported bug in windspeed conversion calculation),
Ross Darnell [ctb] (Reported bug in Windows OS versions causing GSOD
data untarring to fail)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 1.2.0 dated 2018-03-29 and 1.2.1 dated 2018-06-16
GSODR-1.2.0/GSODR/R/deprecated_functions.R |only GSODR-1.2.0/GSODR/man/GSODR-deprecated.Rd |only GSODR-1.2.1/GSODR/DESCRIPTION | 36 GSODR-1.2.1/GSODR/MD5 | 66 - GSODR-1.2.1/GSODR/NAMESPACE | 1 GSODR-1.2.1/GSODR/NEWS.md | 598 +++++----- GSODR-1.2.1/GSODR/R/GSODR-package.R | 19 GSODR-1.2.1/GSODR/R/get_GSOD.R | 351 ----- GSODR-1.2.1/GSODR/R/get_inventory.R | 22 GSODR-1.2.1/GSODR/R/internal_functions.R |only GSODR-1.2.1/GSODR/R/nearest_stations.R | 10 GSODR-1.2.1/GSODR/R/reformat_GSOD.R | 64 - GSODR-1.2.1/GSODR/R/update_station_list.R | 24 GSODR-1.2.1/GSODR/README.md | 33 GSODR-1.2.1/GSODR/build/vignette.rds |binary GSODR-1.2.1/GSODR/inst/doc/GSODR.R | 2 GSODR-1.2.1/GSODR/inst/doc/GSODR.Rmd | 2 GSODR-1.2.1/GSODR/inst/doc/GSODR.html | 50 GSODR-1.2.1/GSODR/inst/doc/Specified_stations_for_a_range_of_years.R | 6 GSODR-1.2.1/GSODR/inst/doc/Specified_stations_for_a_range_of_years.Rmd | 4 GSODR-1.2.1/GSODR/inst/doc/Specified_stations_for_a_range_of_years.html | 5 GSODR-1.2.1/GSODR/inst/doc/Working_with_spatial_and_climate_data.html | 3 GSODR-1.2.1/GSODR/inst/extdata/country_list.rda |binary GSODR-1.2.1/GSODR/inst/extdata/isd_history.rda |binary GSODR-1.2.1/GSODR/inst/extdata/stations.rda |only GSODR-1.2.1/GSODR/man/GSODR.Rd | 15 GSODR-1.2.1/GSODR/man/get_GSOD.Rd | 42 GSODR-1.2.1/GSODR/man/get_inventory.Rd | 6 GSODR-1.2.1/GSODR/man/reformat_GSOD.Rd | 38 GSODR-1.2.1/GSODR/man/update_station_list.Rd | 9 GSODR-1.2.1/GSODR/tests/testthat/test-get_GSOD.R | 3 GSODR-1.2.1/GSODR/tests/testthat/test-process_gz.R | 3 GSODR-1.2.1/GSODR/tests/testthat/test-reformat_GSOD.R | 24 GSODR-1.2.1/GSODR/tests/testthat/test-update_station_list.R | 6 GSODR-1.2.1/GSODR/vignettes/GSODR.Rmd | 2 GSODR-1.2.1/GSODR/vignettes/Specified_stations_for_a_range_of_years.Rmd | 4 36 files changed, 630 insertions(+), 818 deletions(-)
Title: Dyadic Mixed Model for Pedigree Data
Description: Dyadic mixed model analysis with multi-trait responses and
pedigree-based partitioning of individual variation into a range of
environmental and genetic variance components for individual and
maternal effects.
Author: Neville Jackson
Maintainer: Neville Jackson <nanddjackson@bigpond.com>
Diff between dmm versions 2.1-3 dated 2018-01-19 and 2.1-4 dated 2018-06-16
DESCRIPTION | 8 +- MD5 | 28 ++++--- NAMESPACE | 4 + R/am.mcrel.R |only R/am.pyrel.R |only R/am.zandrel.R | 173 +++++++++++++++++++++++++++++++++++++++++++++-- R/dmesolve.R | 6 - R/gsummary.dmm.R | 15 ++-- R/make.ctable.R | 16 ++-- R/make.matcline.R |only R/make.patyline.R |only data/sheep.df.rda |binary inst/doc/bugs.txt | 3 inst/doc/dmmOverview.pdf |binary inst/doc/mods.txt | 4 + man/dmm-internal.Rd | 16 ++-- man/dmm-package.Rd | 5 - 17 files changed, 232 insertions(+), 46 deletions(-)
Title: QTL Genome-Wide Composite Interval Mapping
Description: Conduct multiple quantitative trait loci (QTL) mapping under the framework of random-QTL-effect mixed linear model. First, each position on the genome is detected in order to construct a negative logarithm P-value curve against genome position. Then, all the peaks on each effect (additive or dominant) curve are viewed as potential QTL, all the effects of the potential QTL are included in a multi-QTL model, their effects are estimated by empirical Bayes in doubled haploid or by adaptive lasso in F2, and true QTL are identified by likelihood radio test. Wang S-B, Wen Y-J, Ren W-L, Ni Y-L, Zhang J, Feng J-Y, Zhang Y-M (2016) <doi:10.1038/srep29951>.
Author: Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, and Zhang Yuan-Ming
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>
Diff between QTL.gCIMapping versions 2.0 dated 2018-04-30 and 3.0 dated 2018-06-16
QTL.gCIMapping-2.0/QTL.gCIMapping/R/gcimFunc.R |only QTL.gCIMapping-2.0/QTL.gCIMapping/R/server.R |only QTL.gCIMapping-2.0/QTL.gCIMapping/R/ui.R |only QTL.gCIMapping-2.0/QTL.gCIMapping/data/gen.rda |only QTL.gCIMapping-2.0/QTL.gCIMapping/data/genf2.rda |only QTL.gCIMapping-2.0/QTL.gCIMapping/data/map.rda |only QTL.gCIMapping-2.0/QTL.gCIMapping/data/mapf2.rda |only QTL.gCIMapping-2.0/QTL.gCIMapping/data/phe.rda |only QTL.gCIMapping-2.0/QTL.gCIMapping/data/phef2.rda |only QTL.gCIMapping-2.0/QTL.gCIMapping/inst/doc/Instruction.pdf |only QTL.gCIMapping-2.0/QTL.gCIMapping/man/gen.Rd |only QTL.gCIMapping-2.0/QTL.gCIMapping/man/genf2.Rd |only QTL.gCIMapping-2.0/QTL.gCIMapping/man/map.Rd |only QTL.gCIMapping-2.0/QTL.gCIMapping/man/mapf2.Rd |only QTL.gCIMapping-2.0/QTL.gCIMapping/man/phe.Rd |only QTL.gCIMapping-2.0/QTL.gCIMapping/man/phef2.Rd |only QTL.gCIMapping-3.0/QTL.gCIMapping/DESCRIPTION | 20 QTL.gCIMapping-3.0/QTL.gCIMapping/MD5 | 41 QTL.gCIMapping-3.0/QTL.gCIMapping/NAMESPACE | 10 QTL.gCIMapping-3.0/QTL.gCIMapping/R/QTL.gCIMapping.R | 867 +++++++- QTL.gCIMapping-3.0/QTL.gCIMapping/R/RcppExports.R |only QTL.gCIMapping-3.0/QTL.gCIMapping/R/WangF.R | 718 ++++++ QTL.gCIMapping-3.0/QTL.gCIMapping/R/WenF.r | 1338 +++++++++++++ QTL.gCIMapping-3.0/QTL.gCIMapping/data/f2data.rda |only QTL.gCIMapping-3.0/QTL.gCIMapping/inst/doc/instruction.pdf |only QTL.gCIMapping-3.0/QTL.gCIMapping/man/QTL.gCIMapping.Rd | 43 QTL.gCIMapping-3.0/QTL.gCIMapping/man/WangF.Rd | 17 QTL.gCIMapping-3.0/QTL.gCIMapping/man/WangS.Rd |only QTL.gCIMapping-3.0/QTL.gCIMapping/man/WenF.Rd | 9 QTL.gCIMapping-3.0/QTL.gCIMapping/man/WenS.Rd |only QTL.gCIMapping-3.0/QTL.gCIMapping/man/f2data.Rd |only QTL.gCIMapping-3.0/QTL.gCIMapping/man/markerinsert.Rd |only QTL.gCIMapping-3.0/QTL.gCIMapping/src |only 33 files changed, 2862 insertions(+), 201 deletions(-)
More information about QTL.gCIMapping at CRAN
Permanent link
Title: Draw Gene Arrow Maps in 'ggplot2'
Description: Provides a 'ggplot2' geom and helper functions for drawing gene
arrow maps.
Author: David Wilkins [aut, cre]
Maintainer: David Wilkins <david@wilkox.org>
Diff between gggenes versions 0.3.0 dated 2018-05-26 and 0.3.1 dated 2018-06-16
DESCRIPTION | 6 MD5 | 10 NEWS.md | 6 R/make_alignment_dummies.R | 14 build/vignette.rds |binary inst/doc/introduction-to-gggenes.html | 580 ++++++++++++++++++---------------- 6 files changed, 337 insertions(+), 279 deletions(-)
Title: Chi-Square and Exact Tests for Model-Free Functional Dependency
Description: Statistical hypothesis testing methods for
model-free functional dependency using asymptotic
chi-square or exact distributions. Functional chi-squares are
asymmetric and functionally optimal, unique from other related
statistics. Tests in this package reveal evidence for causality
based on the causality-by-functionality principle. They include
asymptotic functional chi-square tests, an exact functional
test, a comparative functional chi-square test, and also a
comparative chi-square test. The normalized non-constant
functional chi-square test was used by Best Performer
NMSUSongLab in HPN-DREAM (DREAM8) Breast Cancer Network
Inference Challenges. For continuous data, these tests offer an
advantage over regression analysis when a parametric functional
form cannot be assumed; for categorical data, they provide a
novel means to assess directional dependency not possible with
symmetrical Pearson's chi-square or Fisher's exact tests.
Author: Yang Zhang [aut],
Hua Zhong [aut],
Ruby Sharma [aut],
Sajal Kumar [aut],
Joe Song [aut, cre]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between FunChisq versions 2.4.5 dated 2018-02-20 and 2.4.5-1 dated 2018-06-16
DESCRIPTION | 8 MD5 | 24 - NEWS | 18 + R/FunChisq.R | 3 build/vignette.rds |binary inst/CITATION | 3 inst/doc/exact.fun.test.html | 4 inst/doc/fun.chisq.test.html | 4 man/FunChisq-package.Rd | 4 man/fun.chisq.test.Rd | 2 src/ExactFunctionalTest.cpp | 706 ++++++++++++++++++++++++----------------- src/funchisq.cpp | 227 +++++++------ tests/testthat/test_FunChisq.R | 75 +++- 13 files changed, 658 insertions(+), 420 deletions(-)
Title: Australian Government Bureau of Meteorology Data from R
Description: Provides functions to interface with Australian Government Bureau
of Meteorology (BOM) data, fetching data and returning a tidy data frame of
précis forecasts, historical and current weather data from stations,
agriculture bulletin data, BOM 0900 or 1500 weather bulletins or a raster
stack object of satellite imagery from GeoTIFF files. Data (c) Australian
Government Bureau of Meteorology Creative Commons (CC) Attribution 3.0
licence or Public Access Licence (PAL) as appropriate. See
<http://www.bom.gov.au/other/copyright.shtml> for further details.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Jonathan Carroll [aut] (<https://orcid.org/0000-0002-1404-5264>),
Mark Padgham [aut, rev] (<https://orcid.org/0000-0003-2172-5265>),
Hugh Parsonage [aut] (<https://orcid.org/0000-0003-4055-0835>),
Keith Pembleton [aut] (<https://orcid.org/0000-0002-1896-4516>),
James Balamuta [ctb] (<https://orcid.org/0000-0003-2826-8458>),
Brooke Anderson [rev] (<https://orcid.org/0000-0002-5012-9035>)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between bomrang versions 0.2.0 dated 2018-05-19 and 0.2.1 dated 2018-06-16
bomrang-0.2.0/bomrang/R/deprecated_functions.R |only bomrang-0.2.0/bomrang/man/bomrang-deprecated.Rd |only bomrang-0.2.0/bomrang/tests/testthat/test-deprecated.R |only bomrang-0.2.1/bomrang/DESCRIPTION | 41 +++--- bomrang-0.2.1/bomrang/MD5 | 67 ++++------ bomrang-0.2.1/bomrang/NAMESPACE | 4 bomrang-0.2.1/bomrang/NEWS.md | 21 +++ bomrang-0.2.1/bomrang/R/bomrang.r | 6 bomrang-0.2.1/bomrang/R/get_ag_bulletin.R | 12 - bomrang-0.2.1/bomrang/R/get_current_weather.R | 24 +-- bomrang-0.2.1/bomrang/R/get_historical.R | 18 +- bomrang-0.2.1/bomrang/R/get_precis_forecast.R | 58 +++++--- bomrang-0.2.1/bomrang/R/get_satellite_imagery.R | 11 - bomrang-0.2.1/bomrang/R/get_weather_bulletins.R | 11 - bomrang-0.2.1/bomrang/R/internal_functions.R | 12 - bomrang-0.2.1/bomrang/R/manage_cached_files.R | 9 - bomrang-0.2.1/bomrang/R/sweep_for_stations.R | 2 bomrang-0.2.1/bomrang/R/update_forecast_towns.R | 4 bomrang-0.2.1/bomrang/R/update_station_locations.R | 11 - bomrang-0.2.1/bomrang/R/zzz.R | 6 bomrang-0.2.1/bomrang/README.md | 3 bomrang-0.2.1/bomrang/inst/doc/bomrang.html | 2 bomrang-0.2.1/bomrang/inst/extdata/JSONurl_site_list.rda |binary bomrang-0.2.1/bomrang/inst/extdata/stations_site_list.rda |binary bomrang-0.2.1/bomrang/man/bomrang.Rd | 6 bomrang-0.2.1/bomrang/man/get_ag_bulletin.Rd | 10 - bomrang-0.2.1/bomrang/man/get_current_weather.Rd | 19 +- bomrang-0.2.1/bomrang/man/get_historical.Rd | 12 - bomrang-0.2.1/bomrang/man/get_precis_forecast.Rd | 15 +- bomrang-0.2.1/bomrang/man/get_satellite_imagery.Rd | 4 bomrang-0.2.1/bomrang/man/get_weather_bulletin.Rd | 9 - bomrang-0.2.1/bomrang/man/manage_cache.Rd | 9 - bomrang-0.2.1/bomrang/man/update_forecast_towns.Rd | 2 bomrang-0.2.1/bomrang/man/update_station_locations.Rd | 8 - bomrang-0.2.1/bomrang/tests/testthat/test-get_historical.R | 3 bomrang-0.2.1/bomrang/tests/testthat/test-get_precis_forecast.R | 5 36 files changed, 232 insertions(+), 192 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-18 1.1-5
2017-02-08 1.1-4
2016-07-18 1.0-0
Title: Miscellaneous Functions by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.1 dated 2018-01-22 and 0.2 dated 2018-06-16
DESCRIPTION | 13 +++++--- MD5 | 43 +++++++++++++++++++++-------- NAMESPACE | 21 +++++++++++++- NEWS.md |only R/command.R | 20 +++++++++++++ R/data-structure.R | 35 +++++++++++++++++++++-- R/io.R | 76 ++++++++++++++++++++++++++++++++++++++++++++++++++-- R/markdown.R |only R/os.R | 4 +- R/packages.R | 45 +++++++++++++++++++++++++++++- R/revcheck.R |only R/rstudio.R |only R/utils.R | 74 ++++++++++++++++++++++++++++++++++++++++++++++++++ README.md | 6 +--- build |only inst |only man/Rscript.Rd |only man/file_string.Rd |only man/gsub_file.Rd |only man/install_dir.Rd |only man/pkg_attach.Rd | 5 ++- man/prose_index.Rd |only man/protect_math.Rd |only man/raw_string.Rd |only man/read_utf8.Rd | 5 ++- man/rev_check.Rd |only man/rstudio_type.Rd |only man/session_info.Rd |only man/strict_list.Rd | 12 +++++--- vignettes |only 30 files changed, 321 insertions(+), 38 deletions(-)
Title: Use and Explore CRU CL v. 2.0 Climatology Elements in R
Description: Provides functions that automate downloading and importing
University of East Anglia Climate Research Unit (CRU) CL v. 2.0 climatology
data into R, facilitates the calculation of minimum temperature and maximum
temperature and formats the data into a tidy data frame as a tibble or a
list of raster stack objects for use in an R session. CRU CL v. 2.0 data
are a gridded climatology of 1961-1990 monthly means released in 2002 and
cover all land areas (excluding Antarctica) at 10 arcminutes
(0.1666667 degree) resolution. For more information see the description of
the data provided by the University of East Anglia Climate Research Unit,
<https://crudata.uea.ac.uk/cru/data/hrg/tmc/readme.txt>.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between getCRUCLdata versions 0.2.3 dated 2018-05-17 and 0.2.4 dated 2018-06-16
DESCRIPTION | 18 +++++++++--------- MD5 | 22 +++++++++++----------- NEWS.md | 20 +++++++++++++++++++- R/create_CRU_df.R | 5 +++-- R/create_CRU_stack.R | 8 +++++--- R/create_stacks.R | 8 ++------ R/getCRUCLdata.R | 8 ++++++++ R/get_CRU.R | 3 ++- R/get_CRU_df.R | 5 +++-- R/get_CRU_stack.R | 5 +++-- R/validate_dsn.R | 10 ++++++---- man/getCRUCLdata.Rd | 7 +++++++ 12 files changed, 78 insertions(+), 41 deletions(-)