Title: HTTP and WebSocket Server Library
Description: Provides low-level socket and protocol support for handling
HTTP and WebSocket requests directly from within R. It is primarily
intended as a building block for other packages, rather than making it
particularly easy to create complete web applications using httpuv alone.
httpuv is built on top of the libuv and http-parser C libraries, both of
which were developed by Joyent, Inc. (See LICENSE file for libuv and
http-parser license information.)
Author: Joe Cheng, Hector Corrada Bravo [ctb], Jeroen Ooms [ctb],
Winston Chang [ctb]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between httpuv versions 1.4.3 dated 2018-05-10 and 1.4.4.1 dated 2018-06-18
DESCRIPTION | 8 +++---- MD5 | 47 ++++++++++++++++++++++---------------------- NAMESPACE | 1 NEWS.md | 21 +++++++++++++++++++ R/RcppExports.R | 23 +++++++++++++++++++++ R/httpuv.R | 41 +++++++++++++++++++++++++++++++++++++- man/ipFamily.Rd |only man/runServer.Rd | 18 ++++++++++++++++ man/startServer.Rd | 24 +++++++++++++++++++++- src/Makevars | 11 +++++++--- src/RcppExports.cpp | 14 ++++++++++++- src/http.cpp | 17 +++++++++++---- src/http.h | 6 ++--- src/httprequest.cpp | 19 +++++++++++++---- src/httprequest.h | 4 ++- src/httpuv.cpp | 43 +++++++++++++++++++++++++++++++++++----- src/socket.cpp | 2 - src/socket.h | 2 - src/utils.h | 6 +++++ src/uvutil.h | 2 - src/webapplication.cpp | 16 ++++++++++++-- src/webapplication.h | 8 +++---- src/websockets.cpp | 2 - src/websockets.h | 2 - tests/testthat/test-utils.R | 28 ++++++++++++++++++++++++++ 25 files changed, 301 insertions(+), 64 deletions(-)
Title: Estimate Growth Rates from Experimental Data
Description: A collection of methods to determine growth rates from
experimental data, in particular from batch experiments and
plate reader trials.
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between growthrates versions 0.7.1 dated 2017-10-22 and 0.7.2 dated 2018-06-18
DESCRIPTION | 25 ++++++++-------- MD5 | 69 +++++++++++++++++++++++---------------------- NAMESPACE | 1 R/all_easylinear.R | 6 ++- R/all_splines.R | 4 +- R/cost.R | 3 + R/extcoef_logistic.R |only R/fit_easylinear.R | 4 +- R/fit_spline.R | 4 +- R/grow_baranyi.R | 1 R/grow_exponential.R | 1 R/grow_genlogistic.R | 1 R/grow_gompertz.R | 1 R/grow_huang.R | 5 +-- R/grow_logistic.R | 1 R/grow_richards.R | 1 R/grow_twostep.R | 1 R/growthrates-package.R | 35 +++++++++------------- R/lm_window.R | 2 - R/methods.R | 20 +++++++++---- build/partial.rdb |only build/vignette.rds |binary inst/doc/Introduction.html | 30 +++++++++---------- inst/doc/User_models.Rmd | 11 +++---- inst/doc/User_models.html | 33 +++++++++++---------- man/all_easylinear.Rd | 6 ++- man/all_splines.Rd | 4 +- man/cost.Rd | 3 + man/extcoef_logistic.Rd |only man/fit_easylinear.Rd | 4 +- man/fit_spline.Rd | 4 +- man/grow_huang.Rd | 4 +- man/growthrates-package.Rd | 36 ++++++++--------------- man/lm_window.Rd | 2 - man/methods.Rd | 8 +++-- vignettes/User_models.Rmd | 11 +++---- vignettes/growthrates.bib | 18 +---------- 37 files changed, 181 insertions(+), 178 deletions(-)
Title: Design Functions for Choice Studies
Description: Design functions for DCMs and other types of choice studies (including MaxDiff and other tradeoffs).
Author: Jack Horne [aut, cre]
Maintainer: Jack Horne <jack@jackhorne.net>
Diff between choiceDes versions 0.9-1 dated 2014-11-24 and 0.9-3 dated 2018-06-18
choiceDes-0.9-1/choiceDes/man/dcm.design.gencand.Rd |only choiceDes-0.9-1/choiceDes/man/get.file.Rd |only choiceDes-0.9-3/choiceDes/DESCRIPTION | 13 ++-- choiceDes-0.9-3/choiceDes/MD5 | 29 +++++----- choiceDes-0.9-3/choiceDes/NAMESPACE | 3 + choiceDes-0.9-3/choiceDes/R/dcm.design.R | 36 ++++-------- choiceDes-0.9-3/choiceDes/R/tradeoff.des.R | 57 +++++++++++++------- choiceDes-0.9-3/choiceDes/R/wrapper.R |only choiceDes-0.9-3/choiceDes/man/choiceDes-package.Rd | 2 choiceDes-0.9-3/choiceDes/man/dcm.design.Rd | 4 - choiceDes-0.9-3/choiceDes/man/dcm.design.cand.Rd | 11 ++- choiceDes-0.9-3/choiceDes/man/dcm.design.effcy.Rd | 2 choiceDes-0.9-3/choiceDes/man/dcm.design.sort.Rd | 6 +- choiceDes-0.9-3/choiceDes/man/optBlockC.Rd |only choiceDes-0.9-3/choiceDes/man/optFederovC.Rd |only choiceDes-0.9-3/choiceDes/man/pw.eval.Rd | 4 - choiceDes-0.9-3/choiceDes/man/tradeoff.des.Rd | 7 +- choiceDes-0.9-3/choiceDes/man/write.tab.Rd | 4 - 18 files changed, 98 insertions(+), 80 deletions(-)
Title: Relational Query Generator for Data Manipulation at Scale
Description: A piped query generator based on Edgar F. Codd's relational
algebra, and on production experience using 'SQL' and 'dplyr' at big data
scale. The design represents an attempt to make 'SQL' more teachable by
denoting composition by a sequential pipeline notation instead of nested
queries or functions. The implementation delivers reliable high
performance data processing on large data systems such as 'Spark',
databases, and 'data.table'. Package features include: data processing trees
or pipelines as observable objects (able to report both columns
produced and columns used), optimized 'SQL' generation as an explicit
user visible modeling step, explicit query reasoning and checking.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rquery versions 0.4.3 dated 2018-05-07 and 0.5.0 dated 2018-06-18
rquery-0.4.3/rquery/R/dbi_ops.R |only rquery-0.4.3/rquery/man/dbi_connection_preferences.Rd |only rquery-0.4.3/rquery/man/dbi_execute.Rd |only rquery-0.4.3/rquery/man/dbi_table.Rd |only rquery-0.4.3/rquery/man/materialize_sql_statement.Rd |only rquery-0.4.3/rquery/man/table_source.Rd |only rquery-0.4.3/rquery/man/wrapr_function.relop.Rd |only rquery-0.5.0/rquery/DESCRIPTION | 26 rquery-0.5.0/rquery/MD5 | 280 +++++---- rquery-0.5.0/rquery/NAMESPACE | 74 ++ rquery-0.5.0/rquery/NEWS.md | 26 rquery-0.5.0/rquery/R/assign_slice.R | 6 rquery-0.5.0/rquery/R/complete_design.R |only rquery-0.5.0/rquery/R/db_info.R | 160 +++-- rquery-0.5.0/rquery/R/db_ops.R |only rquery-0.5.0/rquery/R/double_clutch.R |only rquery-0.5.0/rquery/R/drop_columns.R | 19 rquery-0.5.0/rquery/R/ex_data_frame.R | 297 ++++----- rquery-0.5.0/rquery/R/extend.R | 122 ++- rquery-0.5.0/rquery/R/if_else_block.R | 28 rquery-0.5.0/rquery/R/join_controller.R | 75 +- rquery-0.5.0/rquery/R/map_cols.R | 6 rquery-0.5.0/rquery/R/materialize.R | 358 ++++++++--- rquery-0.5.0/rquery/R/natural_join.R | 112 ++- rquery-0.5.0/rquery/R/non_sql_node.R | 101 ++- rquery-0.5.0/rquery/R/normalize.R | 9 rquery-0.5.0/rquery/R/null_replace.R | 27 rquery-0.5.0/rquery/R/old_dbi_fns.R |only rquery-0.5.0/rquery/R/op_diagram.R | 11 rquery-0.5.0/rquery/R/order_by.R | 61 - rquery-0.5.0/rquery/R/ordered_select_rows.R | 27 rquery-0.5.0/rquery/R/package.R | 62 +- rquery-0.5.0/rquery/R/pre_sql.R | 319 ---------- rquery-0.5.0/rquery/R/project.R | 75 +- rquery-0.5.0/rquery/R/quantile.R | 88 ++ rquery-0.5.0/rquery/R/relop.R | 41 - rquery-0.5.0/rquery/R/rename.R | 20 rquery-0.5.0/rquery/R/rsummary.R | 266 ++++++-- rquery-0.5.0/rquery/R/select_columns.R | 19 rquery-0.5.0/rquery/R/select_rows.R | 28 rquery-0.5.0/rquery/R/set_indicator.R | 218 ++++++- rquery-0.5.0/rquery/R/sql_expr_set.R | 13 rquery-0.5.0/rquery/R/sql_node.R | 17 rquery-0.5.0/rquery/R/table_source.R | 152 ++++ rquery-0.5.0/rquery/R/theta_join.R | 112 +-- rquery-0.5.0/rquery/R/tokenize_for_sql.R | 118 ++- rquery-0.5.0/rquery/R/union_all.R | 16 rquery-0.5.0/rquery/R/utils.R | 22 rquery-0.5.0/rquery/R/work_with_NULLs.R | 64 +- rquery-0.5.0/rquery/R/zzz.R | 3 rquery-0.5.0/rquery/README.md | 124 ++-- rquery-0.5.0/rquery/build/vignette.rds |binary rquery-0.5.0/rquery/inst/doc/AssigmentPartitioner.R | 4 rquery-0.5.0/rquery/inst/doc/AssigmentPartitioner.Rmd | 4 rquery-0.5.0/rquery/inst/doc/AssigmentPartitioner.html | 50 + rquery-0.5.0/rquery/inst/doc/PipeableSQL.R |only rquery-0.5.0/rquery/inst/doc/PipeableSQL.Rmd |only rquery-0.5.0/rquery/inst/doc/PipeableSQL.html |only rquery-0.5.0/rquery/inst/doc/QueryGeneration.R | 34 - 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rquery-0.5.0/rquery/vignettes/rquery_intro.Rmd | 351 +---------- 164 files changed, 2792 insertions(+), 3022 deletions(-)
Title: Epistemic Network Analysis
Description: ENA (Shaffer, D. W. (2017) Quantitative Ethnography. ISBN: 0578191687) is a method used to identify meaningful and quantifiable patterns in discourse or reasoning. ENA moves beyond the traditional frequency-based assessments by examining the structure of the co-occurrence, or connections in coded data. Moreover, compared to other methodological approaches, ENA has the novelty of (1) modeling whole networks of connections and (2) affording both quantitative and qualitative comparisons between different network models. Shaffer, D.W., Collier, W., & Ruis, A.R. (2016) <doi:10.18608/jla.2016.33.3>.
Author: Cody L Marquart [aut, cre],
Zachari Swiecki [aut],
Wesley Collier [aut],
Brendan Eagan [aut],
Roman Woodward [aut],
David Williamson Shaffer [aut]
Maintainer: Cody L Marquart <cody.marquart@wisc.edu>
Diff between rENA versions 0.1.4 dated 2018-04-19 and 0.1.5 dated 2018-06-18
DESCRIPTION | 9 + MD5 | 32 +++--- NAMESPACE | 2 R/ENArotation.set.R | 44 ++++++++ R/accumulate.data.R | 6 - R/ena.conversations.R | 71 +++++++++----- R/ena.generate.R | 210 +++++++++++++++++++++++------------------- R/ena.plot.network.R | 38 ++++--- R/ena.unit.group.R | 18 ++- R/ena.writeup.R |only R/group.stats.R | 30 +++--- R/put.s3.object.R | 232 +++++++++++++++++------------------------------ R/xlsx.to.s3csv.R |only demo/fullExample.R | 16 --- inst/rmd |only man/ena.conversations.Rd | 14 ++ man/ena.plot.network.Rd | 18 ++- man/ena.writeup.Rd |only man/methods_report.Rd |only 19 files changed, 389 insertions(+), 351 deletions(-)
Title: Importing Vector Graphics
Description: Functions for converting, importing, and drawing PostScript
pictures in R plots.
Author: Paul Murrell [aut, cre],
Richard Walton [aut],
Simon Potter [ctb]
Maintainer: Paul Murrell <p.murrell@auckland.ac.nz>
Diff between grImport versions 0.9-0 dated 2013-12-11 and 0.9-1 dated 2018-06-18
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/PostScript2RGML.R | 4 ++-- build/vignette.rds |binary inst/doc/changes.txt | 9 +++++++++ inst/doc/import.pdf |binary inst/doc/importText.pdf |binary 8 files changed, 24 insertions(+), 15 deletions(-)
Title: Functions and Data for a Course on Modern Regression and
Classification
Description: Functions and data are provided that support a course that emphasizes statistical
issues of inference and generalizability. Attention is restricted to a relatively small
number of methods, often (misleadingly, in my view) referred to as algorithms.
Author: John Maindonald
Maintainer: John Maindonald <jhmaindonald@gmail.com>
Diff between gamclass versions 0.57 dated 2018-04-03 and 0.58 dated 2018-06-18
DESCRIPTION | 17 - MD5 | 340 +++++++++++++++--------------- R/RFcluster.R | 1 build/vignette.rds |binary data/bronchitis.rda |only data/datalist | 1 inst/doc/figs1.R | 51 ++-- inst/doc/figs1.Rnw | 52 ++-- inst/doc/figs1.pdf |binary inst/doc/figs10.R | 37 +-- inst/doc/figs10.Rnw | 14 - inst/doc/figs10.pdf |binary inst/doc/figs11.R | 47 ++-- inst/doc/figs11.Rnw | 20 + inst/doc/figs11.pdf |binary inst/doc/figs2.R | 91 ++++---- inst/doc/figs2.Rnw | 26 +- inst/doc/figs2.pdf |binary inst/doc/figs3.R | 135 ++++++----- inst/doc/figs3.Rnw | 40 ++- inst/doc/figs3.pdf |binary inst/doc/figs4.R | 203 +++++++++-------- inst/doc/figs4.Rnw | 59 ++--- inst/doc/figs4.pdf |binary inst/doc/figs5.R | 69 +++--- inst/doc/figs5.Rnw | 44 ++- inst/doc/figs5.pdf |binary inst/doc/figs6.R | 149 ++++++------- inst/doc/figs6.Rnw | 43 ++- inst/doc/figs6.pdf |binary inst/doc/figs7.R | 51 ++-- inst/doc/figs7.Rnw | 59 ++++- inst/doc/figs7.pdf |binary inst/doc/figs8.R | 82 ++++--- inst/doc/figs8.Rnw | 35 ++- 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vignettes/figs/tree-cf-models-rfgam-1.pdf |binary vignettes/figs1.Rnw | 52 ++-- vignettes/figs10-concordance.tex | 3 vignettes/figs10.Rnw | 14 - vignettes/figs11-concordance.tex | 6 vignettes/figs11.Rnw | 20 + vignettes/figs2-concordance.tex | 6 vignettes/figs2.Rnw | 26 +- vignettes/figs3-concordance.tex | 11 vignettes/figs3.Rnw | 40 ++- vignettes/figs4-concordance.tex | 12 - vignettes/figs4.Rnw | 59 ++--- vignettes/figs5.Rnw | 44 ++- vignettes/figs6.Rnw | 43 ++- vignettes/figs7.Rnw | 59 ++++- vignettes/figs8-concordance.tex | 7 vignettes/figs8.Rnw | 35 ++- vignettes/figs9-concordance.tex | 12 - vignettes/figs9.Rnw | 86 +++---- 172 files changed, 1397 insertions(+), 1140 deletions(-)
Title: Reads 'SPSS' and 'SAS' Files from ASCII Data Files (.txt) and
Setup Files (.sps or .sas)
Description: Lets you open an 'SPSS' or 'SAS' data file using a .txt file that has the data and a .sps or .sas file with setup instructions. This will only run in a txt-sps or txt-sas pair in which the setup file contains instructions to open that text file. It will NOT open other text files, .sav, .por, or 'SAS' files.
Author: Jacob Kaplan [aut, cre]
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between asciiSetupReader versions 1.2 dated 2017-11-26 and 1.4.0 dated 2018-06-18
asciiSetupReader-1.2/asciiSetupReader/inst/testdata/nibrs_2000_batch_header1.sps |only asciiSetupReader-1.2/asciiSetupReader/inst/testdata/sacramento.sps |only asciiSetupReader-1.2/asciiSetupReader/inst/testdata/sex_offender_notification.sps |only asciiSetupReader-1.2/asciiSetupReader/inst/testdata/ucr1960.sps |only asciiSetupReader-1.2/asciiSetupReader/tests/testthat/test-dimensions-mising.R |only asciiSetupReader-1.4.0/asciiSetupReader/DESCRIPTION | 14 asciiSetupReader-1.4.0/asciiSetupReader/MD5 | 85 +- asciiSetupReader-1.4.0/asciiSetupReader/NEWS.md |only asciiSetupReader-1.4.0/asciiSetupReader/R/helper.R | 158 +++- asciiSetupReader-1.4.0/asciiSetupReader/R/parse_spss_setup.R |only asciiSetupReader-1.4.0/asciiSetupReader/R/sas.R | 231 +++--- asciiSetupReader-1.4.0/asciiSetupReader/R/spss.R | 234 ++----- asciiSetupReader-1.4.0/asciiSetupReader/R/utils.R |only asciiSetupReader-1.4.0/asciiSetupReader/README.md | 129 +++ asciiSetupReader-1.4.0/asciiSetupReader/build/vignette.rds |binary asciiSetupReader-1.4.0/asciiSetupReader/inst/doc/Introduction_to_asciiReader.Rmd | 2 asciiSetupReader-1.4.0/asciiSetupReader/inst/doc/Introduction_to_asciiReader.html | 334 ++++++++-- asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/1980_leoka.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/1981_SHR.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/1981_SHR_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/1985_UCR_offenses_known.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/1985_UCR_offenses_known_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/1986_UCR_offenses_known.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/1986_UCR_offenses_known_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/1987_SHR.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/1987_SHR_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/1988_SHR.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/1988_SHR_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/2000_UCR_offenses_known.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/2000_UCR_offenses_known_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/2006_UCR_offenses_known_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/acs.dat |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/acs_sas.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/acs_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/ca_vital.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/ca_vital_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/crosswalk.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/crosswalk_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/nibrs_2000_batch_header1.zip |binary asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/nibrs_2000_batch_header1_sas.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/nibrs_2000_batch_header1_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/parole_survey.txt |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/parole_survey.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/parole_survey_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/prisoners.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/prisoners_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/sacramento.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/sacramento_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/sex_offender_notification.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/sex_offender_notification_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/ucr1960_sas.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/ucr1960_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/ucr_property_stolen_1998.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/ucr_property_stolen_1998_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/weimar.txt |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/weimar_sas.zip |only asciiSetupReader-1.4.0/asciiSetupReader/inst/testdata/weimar_sps.zip |only asciiSetupReader-1.4.0/asciiSetupReader/man/sas_ascii_reader.Rd | 58 + asciiSetupReader-1.4.0/asciiSetupReader/man/spss_ascii_reader.Rd | 56 + asciiSetupReader-1.4.0/asciiSetupReader/tests/testthat/setup.R |only asciiSetupReader-1.4.0/asciiSetupReader/tests/testthat/test-all-value-labels-assigned.R | 307 ++++++--- asciiSetupReader-1.4.0/asciiSetupReader/tests/testthat/test-column-names.R | 156 ++-- asciiSetupReader-1.4.0/asciiSetupReader/tests/testthat/test-column-type.R | 159 +++- asciiSetupReader-1.4.0/asciiSetupReader/tests/testthat/test-dimensions-missing.R |only asciiSetupReader-1.4.0/asciiSetupReader/tests/testthat/test-missing-values.R |only asciiSetupReader-1.4.0/asciiSetupReader/tests/testthat/test-parse-value-labels.R |only asciiSetupReader-1.4.0/asciiSetupReader/tests/testthat/test-silent.R |only asciiSetupReader-1.4.0/asciiSetupReader/tests/testthat/test-spss-parser.R |only asciiSetupReader-1.4.0/asciiSetupReader/tests/testthat/test-value-labels.R | 188 +++-- asciiSetupReader-1.4.0/asciiSetupReader/vignettes/Introduction_to_asciiReader.Rmd | 2 70 files changed, 1388 insertions(+), 725 deletions(-)
More information about asciiSetupReader at CRAN
Permanent link
Title: An Implementation of the Artificial Hydrocarbon Networks
Description: Implementation of the Artificial Hydrocarbon Networks for data
modeling.
Author: Jose Roberto Ayala Solares [aut, cre]
Maintainer: Jose Roberto Ayala Solares <ichbinjras@gmail.com>
Diff between ahnr versions 0.3.0 dated 2018-06-16 and 0.3.1 dated 2018-06-18
ahnr-0.3.0/ahnr/man/plot.Rd |only ahnr-0.3.0/ahnr/man/plot.ahn.Rd |only ahnr-0.3.0/ahnr/man/predict.Rd |only ahnr-0.3.0/ahnr/man/summary.Rd |only ahnr-0.3.1/ahnr/DESCRIPTION | 6 ++--- ahnr-0.3.1/ahnr/MD5 | 27 ++++++++++------------- ahnr-0.3.1/ahnr/NAMESPACE | 5 ---- ahnr-0.3.1/ahnr/NEWS.md | 5 ++++ ahnr-0.3.1/ahnr/R/ahn_main.R | 42 +++++++++++++++++++------------------ ahnr-0.3.1/ahnr/R/generics.R | 18 +++++++-------- ahnr-0.3.1/ahnr/inst/doc/ahn.R | 4 +-- ahnr-0.3.1/ahnr/inst/doc/ahn.Rmd | 6 ++--- ahnr-0.3.1/ahnr/inst/doc/ahn.html | 26 +++++++--------------- ahnr-0.3.1/ahnr/man/predict.ahn.Rd | 8 ++----- ahnr-0.3.1/ahnr/man/summary.ahn.Rd | 4 +-- ahnr-0.3.1/ahnr/man/visualize.Rd |only ahnr-0.3.1/ahnr/vignettes/ahn.Rmd | 6 ++--- 17 files changed, 73 insertions(+), 84 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions, rivers and water bodies of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.2.4 dated 2018-05-11 and 1.2.5 dated 2018-06-18
DESCRIPTION | 8 +++---- MD5 | 36 ++++++++++++++++---------------- NAMESPACE | 1 NEWS.md | 3 ++ R/RCzechia.R | 7 ++++-- R/casti.R | 28 +++++++++++++++++++++--- R/kraje.R | 26 ++++++++++++++++++----- R/obce_body.R | 28 +++++++++++++++++++++--- R/obce_polygony.R | 30 +++++++++++++++++++++++--- R/okresy.R | 27 ++++++++++++++++++------ R/orp_polygony.R | 28 +++++++++++++++++++++--- R/plochy.R | 28 +++++++++++++++++++++--- R/reky.R | 28 +++++++++++++++++++++--- R/republika.R | 26 ++++++++++++++++++----- R/union_sf.R | 2 - README.md | 1 inst/doc/vignette.html | 8 +++---- man/RCzechia-package.Rd | 6 +++-- tests/testthat/test-1-data-structures.R | 18 ++++++---------- 19 files changed, 256 insertions(+), 83 deletions(-)
Title: EDGE Taxonomy Assignments Visualization
Description: Implements routines for metagenome sample taxonomy assignments collection,
aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2,
BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots
comparing taxa abundances across projects.
Author: Pavel Senin [aut, cre]
Maintainer: Pavel Senin <senin@hawaii.edu>
Diff between MetaComp versions 1.1.1 dated 2018-02-19 and 1.1.2 dated 2018-06-18
DESCRIPTION | 6 ++-- MD5 | 18 ++++++------- README.md | 31 +++++++++++++++--------- tests/testthat/test_plot_merged_assignment_b.R | 3 -- tests/testthat/test_plot_merged_assignment_d.R | 3 -- tests/testthat/test_plot_merged_assignment_g.R | 3 -- tests/testthat/test_plot_merged_assignment_g2.R | 3 -- tests/testthat/test_plot_merged_assignment_k.R | 3 -- tests/testthat/test_plot_merged_assignment_m.R | 3 -- tests/testthat/test_plot_merged_assignment_p.R | 3 -- 10 files changed, 39 insertions(+), 37 deletions(-)
Title: 'GeoJSON' Topology Calculations and Operations
Description: Tools for doing calculations and manipulations on 'GeoJSON',
a 'geospatial' data interchange format (<https://tools.ietf.org/html/rfc7946>).
'GeoJSON' is also valid 'JSON'.
Author: Scott Chamberlain [aut, cre],
Niels Lohmann [cph]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between geoops versions 0.1.8 dated 2018-03-19 and 0.2.0 dated 2018-06-18
DESCRIPTION | 12 MD5 | 16 NEWS.md | 11 README.md | 18 build/vignette.rds |binary inst/doc/geoops_vignette.html | 9 src/json.h | 3170 +++++++++++++++++++++++++++------------ tools/img/unnamed-chunk-21-1.png |binary tools/img/unnamed-chunk-22-1.png |binary 9 files changed, 2277 insertions(+), 959 deletions(-)
Title: Selection Bias Approach to Sensitivity Analysis for Causal
Effects
Description: The causalsens package provides functions to perform sensitivity analyses and to study how various assumptions about selection bias affects estimates of causal effects.
Author: Matthew Blackwell <mblackwell@gov.harvard.edu.edu>
Maintainer: Matthew Blackwell <mblackwell@gov.harvard.edu>
Diff between causalsens versions 0.1.1 dated 2015-07-01 and 0.1.2 dated 2018-06-18
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/causalsens.R | 6 +++--- build/vignette.rds |binary inst/doc/causalsens.pdf |binary 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Simulating the Evolution of Biological Sequences
Description: A coalescent simulator that allows the rapid simulation of
biological sequences under neutral models of evolution. Different to other
coalescent based simulations, it has an optional approximation parameter that
allows for high accuracy while maintaining a linear run time cost for long
sequences. It is optimized for simulating massive data sets as produced by Next-
Generation Sequencing technologies for up to several thousand sequences.
Author: Paul Staab [aut, cre, cph],
Zhu Sha [aut, cph],
Dirk Metzler [aut, cph, ths],
Gerton Lunter [aut, cph, ths]
Maintainer: Paul Staab <develop@paulstaab.de>
Diff between scrm versions 1.7.2-1 dated 2017-12-07 and 1.7.2-3 dated 2018-06-18
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS | 14 ++++++++++++++ build/vignette.rds |binary inst/doc/scrm-Arguments.html | 4 ++-- inst/doc/scrm-TreesForApe.html | 4 ++-- src/scrm/macros.h | 3 --- src/scrm/model.h | 1 - src/scrm/node_container.h | 10 ++++++---- src/scrm/summary_statistics/oriented_forest.cc | 19 +++++++++++++++---- 10 files changed, 51 insertions(+), 28 deletions(-)
Title: Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation
Description: Generalized additive (mixed) models, some of their extensions and
other generalized ridge regression with multiple smoothing
parameter estimation by (Restricted) Marginal Likelihood,
Generalized Cross Validation and similar. Includes a gam()
function, a wide variety of smoothers, JAGS support and
distributions beyond the exponential family.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>
Diff between mgcv versions 1.8-23 dated 2018-01-14 and 1.8-24 dated 2018-06-18
ChangeLog | 55 +++++++ DESCRIPTION | 6 MD5 | 99 ++++++------- NAMESPACE | 2 R/bam.r | 26 ++- R/coxph.r | 19 +- R/efam.r | 102 ++----------- R/fast-REML.r | 35 ++++ R/gam.fit3.r | 51 +++++- R/gam.fit4.r | 237 +++++++++++++++++++++++++++----- R/gamm.r | 34 +++- R/mgcv.r | 56 +++++-- R/plots.r | 31 ++-- R/smooth.r | 25 ++- inst/po/de/LC_MESSAGES/R-mgcv.mo |binary inst/po/de/LC_MESSAGES/mgcv.mo |binary inst/po/en@quot/LC_MESSAGES/R-mgcv.mo |binary inst/po/en@quot/LC_MESSAGES/mgcv.mo |binary inst/po/fr/LC_MESSAGES/R-mgcv.mo |binary inst/po/fr/LC_MESSAGES/mgcv.mo |binary inst/po/ko/LC_MESSAGES/R-mgcv.mo |binary inst/po/ko/LC_MESSAGES/mgcv.mo |binary inst/po/pl/LC_MESSAGES/R-mgcv.mo |binary inst/po/pl/LC_MESSAGES/mgcv.mo |binary man/bam.Rd | 16 +- man/coxpht.Rd | 4 man/gam.Rd | 6 man/gam.control.Rd | 15 +- man/gevlss.Rd | 11 + man/jagam.Rd | 19 ++ man/k.check.Rd |only man/linear.functional.terms.Rd | 33 ++++ man/logLik.gam.Rd | 48 ++++-- man/mgcv-parallel.Rd | 8 - man/plot.gam.Rd | 5 man/predict.gam.Rd | 4 man/smooth.construct.ad.smooth.spec.Rd | 2 man/smooth.construct.mrf.smooth.spec.Rd | 22 ++ po/R-de.po | 237 +++++++++++++++++--------------- po/R-fr.po | 72 +++++---- po/R-ko.po | 73 +++++---- po/R-mgcv.pot | 55 +++---- po/R-pl.po | 115 +++++++++------ po/de.po | 40 ++--- po/fr.po | 40 ++--- po/ko.po | 34 +--- po/mgcv.pot | 33 +--- po/pl.po | 52 +++---- src/coxph.c | 4 src/init.c | 2 src/mgcv.h | 2 51 files changed, 1080 insertions(+), 650 deletions(-)
Title: Thermophysical Properties of Water and Steam
Description: Functions for Water and Steam Properties based on the IAPWS Formulation
1995 for the Thermodynamic Properties of Ordinary Water Substance for General and
Scientific Use and on the releases for viscosity, conductivity, surface tension and
melting pressure.
Author: Benedito Baptista [aut, cre]
Maintainer: Benedito Baptista <bene46@msn.com>
Diff between IAPWS95 versions 1.0.0 dated 2016-09-07 and 1.1.0 dated 2018-06-18
DESCRIPTION | 10 - MD5 | 266 +++++++++++++++++++++++++------------------------- NAMESPACE | 4 NEWS.md | 10 - R/fooConst.R | 100 +++++++++--------- R/fooDeriv.R | 72 ++++++------- R/fooHZ.R | 116 +++++++++------------ R/fooOth.R | 160 +++++++++++++++++------------- R/fooSatT.R | 139 +++++++++++--------------- R/fooSatTable.R | 80 +++++++-------- R/fooSatpDs.R | 86 +++++++--------- R/fooTD.R | 88 ++++++---------- R/fooTp.R | 87 ++++++---------- R/fooTransp.R | 84 +++++---------- R/foopTTable.R | 112 ++++++++++++--------- README.md | 6 - build/vignette.rds |binary inst/doc/IAPWS95.Rmd | 4 inst/doc/IAPWS95.html | 55 ++++++---- man/BT.Rd | 6 - man/CT.Rd | 6 - man/CndTD.Rd | 22 +--- man/CpTD.Rd | 4 man/CpTp.Rd | 4 man/CpfT.Rd | 6 - man/CpgT.Rd | 6 - man/CvTD.Rd | 4 man/CvTp.Rd | 4 man/CvfT.Rd | 6 - man/CvgT.Rd | 6 - man/DCrit.Rd | 6 - man/DTh.Rd | 4 man/DTp.Rd | 4 man/DTpcteTab.Rd | 9 - man/DTs.Rd | 4 man/DfT.Rd | 6 - man/DfTr.Rd | 6 - man/Dfp.Rd | 6 - man/Dfs.Rd | 6 - man/DgT.Rd | 6 - man/DgTr.Rd | 6 - man/Dgp.Rd | 6 - man/Dgs.Rd | 11 -- man/Dhs.Rd | 4 man/DpTcteTab.Rd | 9 - man/Dph.Rd | 4 man/Dps.Rd | 4 man/FugaTp.Rd | 4 man/GibbsTp.Rd | 4 man/JTcTD.Rd | 4 man/KViscTD.Rd | 10 - man/KapaTD.Rd | 6 - man/PrandtTD.Rd | 4 man/Rwater.Rd | 6 - man/SigmaT.Rd | 9 - man/TCrit.Rd | 6 - man/TDh.Rd | 4 man/TDp.Rd | 4 man/TDs.Rd | 4 man/TSatD.Rd | 7 - man/TSatp.Rd | 6 - man/TSats.Rd | 6 - man/TTr.Rd | 4 man/ThrcTD.Rd | 6 - man/Ths.Rd | 4 man/Tph.Rd | 4 man/Tps.Rd | 4 man/ViscTD.Rd | 12 -- man/Vp.Rd |only man/ZTD.Rd | 4 man/dDdTTD.Rd | 6 - man/dDdTTp.Rd | 6 - man/dpdDTD.Rd | 6 - man/dpdDTp.Rd | 6 - man/dpdTTD.Rd | 6 - man/dpdTTp.Rd | 6 - man/errorCodes.Rd | 1 man/fTD.Rd | 9 - man/fTp.Rd | 4 man/hCrit.Rd | 6 - man/hTD.Rd | 4 man/hTp.Rd | 4 man/hTpcteTab.Rd | 7 - man/hfT.Rd | 6 - man/hgT.Rd | 6 - man/hpTcteTab.Rd | 9 - man/hps.Rd | 4 man/pCrit.Rd | 6 - man/pMeltT.Rd | 8 - man/pSatD.Rd | 7 - man/pSatT.Rd | 6 - man/pSats.Rd | 6 - man/pTD.Rd | 10 - man/pTr.Rd | 6 - man/phi0.Rd | 6 - man/phi0D.Rd | 8 - man/phi0DD.Rd | 6 - man/phi0DT.Rd | 6 - man/phi0T.Rd | 6 - man/phi0TT.Rd | 6 - man/phir.Rd | 6 - man/phirD.Rd | 6 - man/phirDD.Rd | 6 - man/phirDT.Rd | 6 - man/phirT.Rd | 6 - man/phirTT.Rd | 6 - man/sCrit.Rd | 6 - man/sTD.Rd | 4 man/sTp.Rd | 4 man/sTpcteTab.Rd | 7 - man/satTabT.Rd | 9 - man/satTabTp.Rd | 9 - man/satTabhT.Rd | 9 - man/satTabp.Rd | 9 - man/satTabpT.Rd | 9 - man/satTabvT.Rd | 9 - man/satTabvp.Rd | 9 - man/sfT.Rd | 6 - man/sfTr.Rd | 6 - man/sgT.Rd | 6 - man/sgTr.Rd | 6 - man/spTcteTab.Rd | 9 - man/sph.Rd | 4 man/uTD.Rd | 4 man/uTp.Rd | 4 man/ufT.Rd | 8 - man/ugT.Rd | 6 - man/vTp.Rd | 4 man/wTD.Rd | 8 - man/wTp.Rd | 4 man/wfT.Rd | 6 - man/wgT.Rd | 6 - src/IAPWS9521D.f90 | 163 +++++++++++++++++------------- src/IAPWS95_init.c |only vignettes/IAPWS95.Rmd | 4 135 files changed, 1154 insertions(+), 1179 deletions(-)
Title: Additional Tools for Developing Spatially Explicit Discrete
Event Simulation (SpaDES) Models
Description: Provides GIS and map utilities, plus additional modeling tools for
developing cellular automata, dynamic raster models, and agent based models
in 'SpaDES'.
Included are various methods for spatial spreading, spatial agents, GIS
operations, random map generation, and others.
See '?SpaDES.tools' for an categorized overview of these additional tools.
Author: Alex M Chubaty [aut, cre],
Eliot J B McIntire [aut],
Yong Luo [ctb],
Steve Cumming [ctb],
Jean Marchal [ctb],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alex.chubaty@gmail.com>
Diff between SpaDES.tools versions 0.1.1 dated 2018-02-01 and 0.2.0 dated 2018-06-18
SpaDES.tools-0.1.1/SpaDES.tools/.aspell |only SpaDES.tools-0.1.1/SpaDES.tools/R/downloadInputs.R |only SpaDES.tools-0.1.1/SpaDES.tools/R/gis.R |only SpaDES.tools-0.1.1/SpaDES.tools/man/extractFromArchive.Rd |only SpaDES.tools-0.1.1/SpaDES.tools/man/fastCrop.Rd |only SpaDES.tools-0.1.1/SpaDES.tools/man/fastMask.Rd |only SpaDES.tools-0.1.1/SpaDES.tools/man/prepInputs.Rd |only SpaDES.tools-0.1.1/SpaDES.tools/tests/testthat/test-gis.R |only SpaDES.tools-0.1.1/SpaDES.tools/tests/testthat/test-spelling.R |only SpaDES.tools-0.2.0/SpaDES.tools/DESCRIPTION | 43 SpaDES.tools-0.2.0/SpaDES.tools/MD5 | 163 SpaDES.tools-0.2.0/SpaDES.tools/NAMESPACE | 286 - SpaDES.tools-0.2.0/SpaDES.tools/NEWS.md | 52 SpaDES.tools-0.2.0/SpaDES.tools/R/RcppExports.R | 141 SpaDES.tools-0.2.0/SpaDES.tools/R/SELES.R | 590 +- SpaDES.tools-0.2.0/SpaDES.tools/R/distanceFromEachPoint.R | 817 +-- SpaDES.tools-0.2.0/SpaDES.tools/R/environment.R | 14 SpaDES.tools-0.2.0/SpaDES.tools/R/heading.R | 174 SpaDES.tools-0.2.0/SpaDES.tools/R/initialize.R | 861 +-- SpaDES.tools-0.2.0/SpaDES.tools/R/mapReduce.R | 148 SpaDES.tools-0.2.0/SpaDES.tools/R/mergeRaster.R | 134 SpaDES.tools-0.2.0/SpaDES.tools/R/movement.R | 252 - SpaDES.tools-0.2.0/SpaDES.tools/R/neighbourhood.R | 2142 ++++---- SpaDES.tools-0.2.0/SpaDES.tools/R/numerical-comparisons.R | 74 SpaDES.tools-0.2.0/SpaDES.tools/R/probability.R |only SpaDES.tools-0.2.0/SpaDES.tools/R/resample.R | 72 SpaDES.tools-0.2.0/SpaDES.tools/R/rings.R | 186 SpaDES.tools-0.2.0/SpaDES.tools/R/spades-tools-deprecated.R |only SpaDES.tools-0.2.0/SpaDES.tools/R/spades-tools-package.R | 218 SpaDES.tools-0.2.0/SpaDES.tools/R/splitRaster.R | 233 SpaDES.tools-0.2.0/SpaDES.tools/R/spread.R | 2324 ++++----- SpaDES.tools-0.2.0/SpaDES.tools/R/spread2.R | 2228 ++++---- SpaDES.tools-0.2.0/SpaDES.tools/R/zzz.R | 42 SpaDES.tools-0.2.0/SpaDES.tools/README.md | 96 SpaDES.tools-0.2.0/SpaDES.tools/inst/WORDLIST |only SpaDES.tools-0.2.0/SpaDES.tools/inst/examples/example_cir.R | 174 SpaDES.tools-0.2.0/SpaDES.tools/inst/examples/example_distanceFromEachPoint.R | 100 SpaDES.tools-0.2.0/SpaDES.tools/inst/examples/example_mapReduce.R | 44 SpaDES.tools-0.2.0/SpaDES.tools/inst/examples/example_rings.R | 76 SpaDES.tools-0.2.0/SpaDES.tools/inst/examples/example_splitRaster.R | 118 SpaDES.tools-0.2.0/SpaDES.tools/inst/examples/example_spokes.R | 74 SpaDES.tools-0.2.0/SpaDES.tools/inst/examples/example_spread.R | 552 +- SpaDES.tools-0.2.0/SpaDES.tools/inst/examples/example_spread2.R | 254 - SpaDES.tools-0.2.0/SpaDES.tools/man/SELESagentLocation.Rd | 54 SpaDES.tools-0.2.0/SpaDES.tools/man/SELESnumAgents.Rd | 56 SpaDES.tools-0.2.0/SpaDES.tools/man/SELESprobInit.Rd | 86 SpaDES.tools-0.2.0/SpaDES.tools/man/SELEStransitions.Rd | 58 SpaDES.tools-0.2.0/SpaDES.tools/man/SpaDES.tools-package.Rd | 270 - SpaDES.tools-0.2.0/SpaDES.tools/man/adj.Rd | 248 SpaDES.tools-0.2.0/SpaDES.tools/man/cir.Rd | 380 - SpaDES.tools-0.2.0/SpaDES.tools/man/cirSpecialQuick.Rd | 64 SpaDES.tools-0.2.0/SpaDES.tools/man/crw.Rd | 162 SpaDES.tools-0.2.0/SpaDES.tools/man/deprecated.Rd |only SpaDES.tools-0.2.0/SpaDES.tools/man/directions.Rd | 178 SpaDES.tools-0.2.0/SpaDES.tools/man/distanceFromEachPoint.Rd |only SpaDES.tools-0.2.0/SpaDES.tools/man/distances.Rd | 257 - SpaDES.tools-0.2.0/SpaDES.tools/man/duplicated.Rd | 36 SpaDES.tools-0.2.0/SpaDES.tools/man/dwrpnorm2.Rd |only SpaDES.tools-0.2.0/SpaDES.tools/man/findFactors.Rd | 38 SpaDES.tools-0.2.0/SpaDES.tools/man/gaussmap.Rd | 111 SpaDES.tools-0.2.0/SpaDES.tools/man/heading.Rd | 126 SpaDES.tools-0.2.0/SpaDES.tools/man/inRange.Rd | 62 SpaDES.tools-0.2.0/SpaDES.tools/man/initiateAgents.Rd | 174 SpaDES.tools-0.2.0/SpaDES.tools/man/match.Rd | 36 SpaDES.tools-0.2.0/SpaDES.tools/man/matchedPointDirection.Rd | 26 SpaDES.tools-0.2.0/SpaDES.tools/man/patchSize.Rd | 28 SpaDES.tools-0.2.0/SpaDES.tools/man/pkgEnv.Rd | 28 SpaDES.tools-0.2.0/SpaDES.tools/man/randomPolygons.Rd | 148 SpaDES.tools-0.2.0/SpaDES.tools/man/rasterizeReduce.Rd | 128 SpaDES.tools-0.2.0/SpaDES.tools/man/rcpp-extras.Rd | 34 SpaDES.tools-0.2.0/SpaDES.tools/man/resample.Rd | 64 SpaDES.tools-0.2.0/SpaDES.tools/man/rings.Rd | 234 SpaDES.tools-0.2.0/SpaDES.tools/man/sampleV.Rd | 60 SpaDES.tools-0.2.0/SpaDES.tools/man/specnumperpatch-probs.Rd | 130 SpaDES.tools-0.2.0/SpaDES.tools/man/splitRaster.Rd | 286 - SpaDES.tools-0.2.0/SpaDES.tools/man/spokes.Rd | 260 - SpaDES.tools-0.2.0/SpaDES.tools/man/spread.Rd | 1262 ++--- SpaDES.tools-0.2.0/SpaDES.tools/man/spread2-internals.Rd | 98 SpaDES.tools-0.2.0/SpaDES.tools/man/spread2.Rd | 892 +-- SpaDES.tools-0.2.0/SpaDES.tools/man/wrap.Rd | 186 SpaDES.tools-0.2.0/SpaDES.tools/src/runif.cpp | 1 SpaDES.tools-0.2.0/SpaDES.tools/tests/test-all.R | 4 SpaDES.tools-0.2.0/SpaDES.tools/tests/testthat/test-adj.R | 322 - SpaDES.tools-0.2.0/SpaDES.tools/tests/testthat/test-examples.R | 41 SpaDES.tools-0.2.0/SpaDES.tools/tests/testthat/test-gaussMap.R |only SpaDES.tools-0.2.0/SpaDES.tools/tests/testthat/test-inRange.R | 48 SpaDES.tools-0.2.0/SpaDES.tools/tests/testthat/test-mapReduce.R | 206 SpaDES.tools-0.2.0/SpaDES.tools/tests/testthat/test-randomPolygon.R | 55 SpaDES.tools-0.2.0/SpaDES.tools/tests/testthat/test-splitRaster.R | 543 +- SpaDES.tools-0.2.0/SpaDES.tools/tests/testthat/test-spread.R | 2520 +++++----- SpaDES.tools-0.2.0/SpaDES.tools/tests/testthat/test-spread2.R | 1805 +++---- 91 files changed, 12262 insertions(+), 12225 deletions(-)
Title: Complement to 'Modern Data Science with R'
Description: A complement to *Modern Data
Science with R* (ISBN: 978-1498724487, publisher URL:
<https://www.crcpress.com/Modern-Data-Science-with-R/Baumer-Kaplan-Horton/p/book/9781498724487>).
This package contains all of the data and code necessary to
complete exercises and reproduce examples from the text. It also
facilitates connections to the SQL database server used in the book.
Author: Ben Baumer [aut, cre],
Nicholas Horton [aut],
Daniel Kaplan [aut]
Maintainer: Ben Baumer <ben.baumer@gmail.com>
Diff between mdsr versions 0.1.5 dated 2017-12-20 and 0.1.6 dated 2018-06-18
DESCRIPTION | 12 +++++------ MD5 | 22 +++++++++++---------- NAMESPACE | 1 NEWS.md | 7 ++++++ R/attach.R | 15 +++++++++----- R/data.R | 55 +++++++++++++++++++++++++++++++++++++++++++++++------ R/scidb.R | 7 +++--- man/Macbeth_raw.Rd | 2 - man/NCI60_tiny.Rd | 24 ++++++++++++++++------- man/OrdwayBirds.Rd | 29 +++++++++++++++++++++++++++ man/Violations.Rd | 2 - tests |only 12 files changed, 136 insertions(+), 40 deletions(-)
Title: Matched Samples that are Balanced and Representative by Design
Description: Includes functions for the construction of matched samples that are balanced and representative by design. Among others, these functions can be used for matching in observational studies with treated and control units, with cases and controls, in related settings with instrumental variables, and in discontinuity designs. Also, they can be used for the design of randomized experiments, for example, for matching before randomization. By default, 'designmatch' uses the 'GLPK' optimization solver, but its performance is greatly enhanced by the 'Gurobi' optimization solver and its associated R interface. For their installation, please follow the instructions at <http://user.gurobi.com/download/gurobi-optimizer> and <http://www.gurobi.com/documentation/7.0/refman/r_api_overview.html>. We have also included directions in the gurobi_installation file in the inst folder.
Author: Jose R. Zubizarreta <zubizarreta@hcp.med.harvard.edu>, Cinar Kilcioglu <ckilcioglu16@gsb.columbia.edu>, Juan P. Vielma <jvielma@mit.edu>
Maintainer: Jose R. Zubizarreta <zubizarreta@hcp.med.harvard.edu>
Diff between designmatch versions 0.3.0 dated 2017-05-17 and 0.3.1 dated 2018-06-18
DESCRIPTION | 14 ++++----- MD5 | 26 ++++++++--------- R/cardmatch.r | 9 ++++-- R/problemparameters_cardmatch.r | 60 ++++++++++++++++++++++++++-------------- man/absstddif.Rd | 2 - man/bmatch.Rd | 11 ++++--- man/cardmatch.Rd | 11 ++++--- man/designmatch-package.Rd | 4 +- man/distmatch.Rd | 11 ++++--- man/ecdfplot.Rd | 2 - man/finetab.Rd | 2 - man/loveplot.Rd | 2 - man/nmatch.Rd | 2 - man/pairsplot.Rd | 2 - 14 files changed, 96 insertions(+), 62 deletions(-)
Title: Statistical Inference of Vine Copulas
Description: Provides tools for the statistical analysis of vine copula models.
The package includes tools for parameter estimation, model selection,
simulation, goodness-of-fit tests, and visualization. Tools for estimation,
selection and exploratory data analysis of bivariate copula models are also
provided.
Author: Ulf Schepsmeier [aut],
Jakob Stoeber [aut],
Eike Christian Brechmann [aut],
Benedikt Graeler [aut],
Thomas Nagler [aut, cre],
Tobias Erhardt [aut],
Carlos Almeida [ctb],
Aleksey Min [ctb, ths],
Claudia Czado [ctb, ths],
Mathias Hofmann [ctb],
Matthias Killiches [ctb],
Harry Joe [ctb],
Thibault Vatter [ctb]
Maintainer: Thomas Nagler <thomas.nagler@tum.de>
Diff between VineCopula versions 2.1.5 dated 2018-05-16 and 2.1.6 dated 2018-06-18
DESCRIPTION | 8 MD5 | 174 +-- NEWS.md | 12 R/BiCop.R | 2 R/BiCopCDF.R | 2 R/BiCopCheck.R | 2 R/BiCopCompare.R | 2 R/BiCopCondSim.R | 2 R/BiCopDeriv.R | 2 R/BiCopDeriv2.R | 2 R/BiCopEst.R | 4 R/BiCopEstList.R | 4 R/BiCopGofTest.R | 4 R/BiCopHfunc.R | 2 R/BiCopHfuncDeriv.R | 4 R/BiCopHfuncDeriv2.R | 2 R/BiCopHinv.R | 2 R/BiCopPDF.R | 2 R/BiCopPar2Beta.R | 2 R/BiCopPar2TailDep.R | 2 R/BiCopPar2Tau.R | 2 R/BiCopSelect.R | 2 R/BiCopSim.R | 2 R/BiCopTau2Par.R | 2 R/BiCopVuongClarke.R | 2 R/RVineClarkeTest.R | 2 R/RVineCopSelect.R | 4 R/RVineGofTest3.R | 4 R/RVineLogLik.R | 2 R/RVineMLE.R | 2 R/RVineMatrix.R | 6 R/RVineMatrixSample.R | 4 R/RVinePar2Beta.R | 2 R/RVinePar2Tau.R | 2 R/RVinePartialcorr.R | 2 R/RVineSeqEst.R | 4 R/RVineStdError.R | 2 R/RVineStructureSelect.R | 19 R/RVineTreePlot.R | 2 R/TauMatrix.R | 2 R/pairs.R | 4 R/plot.RVineMatrix.R | 3 build/partial.rdb |binary man/BiCop.Rd | 2 man/BiCopCDF.Rd | 2 man/BiCopCheck.Rd | 2 man/BiCopCompare.Rd | 2 man/BiCopCondSim.Rd | 2 man/BiCopDeriv.Rd | 2 man/BiCopDeriv2.Rd | 2 man/BiCopEst.Rd | 4 man/BiCopEstList.Rd | 4 man/BiCopGofTest.Rd | 2 man/BiCopHfunc.Rd | 2 man/BiCopHfuncDeriv.Rd | 4 man/BiCopHfuncDeriv2.Rd | 2 man/BiCopHinv.Rd | 2 man/BiCopPDF.Rd | 2 man/BiCopPar2Beta.Rd | 2 man/BiCopPar2TailDep.Rd | 2 man/BiCopPar2Tau.Rd | 2 man/BiCopSelect.Rd | 2 man/BiCopSim.Rd | 2 man/BiCopTau2Par.Rd | 2 man/BiCopVuongClarke.Rd | 2 man/RVineClarkeTest.Rd | 2 man/RVineCopSelect.Rd | 4 man/RVineCor2pcor.Rd | 2 man/RVineGofTest.Rd | 4 man/RVineLogLik.Rd | 2 man/RVineMLE.Rd | 2 man/RVineMatrix.Rd | 4 man/RVineMatrixCheck.Rd | 2 man/RVineMatrixSample.Rd | 4 man/RVinePar2Beta.Rd | 2 man/RVinePar2Tau.Rd | 2 man/RVineSeqEst.Rd | 4 man/RVineStdError.Rd | 2 man/RVineStructureSelect.Rd | 18 man/RVineTreePlot.Rd | 2 man/TauMatrix.Rd | 2 man/pairs.copuladata.Rd | 4 man/plot.RVineMatrix.Rd | 2 src/deriv.c | 853 +++++++-------- src/deriv2.c | 2367 ++++++++++++++++++++------------------------ src/hfuncderiv.c | 880 +++++++--------- src/hfuncderiv2.c | 1701 ++++++++++++++----------------- tests/testthat |only tests/testthat.R |only 89 files changed, 2906 insertions(+), 3321 deletions(-)
Title: Accessing and Processing a 'Mega2' Genetic Database
Description: Uses as input genetic data that have been reformatted
and stored in a 'SQLite' database; this database is initially
created by the standalone 'mega2' C++ program (available freely
from <https://watson.hgen.pitt.edu/register/>). Loads and
manipulates data frames containing genotype, phenotype, and family
information from the input 'SQLite' database, and decompresses
needed subsets of the genotype data, on the fly, in a memory
efficient manner. We have also created several more functions that
illustrate how to use the data frames as well as perform useful
tasks: these permit one to run the 'pedgene' package to carry out
gene-based association tests on family data using selected marker
subsets, to run the 'SKAT' package to carry out gene-based
association tests using selected marker subsets, to output the
'Mega2R' data as a VCF file and related files (for phenotype and
family data), and to convert the data frames into
CoreArray Genomic Data Structure (GDS) format.
Author: Robert V. Baron [aut],
Daniel E. Weeks [aut, cre],
University of Pittsburgh [cph]
Maintainer: Daniel E. Weeks <weeks@pitt.edu>
Diff between Mega2R versions 1.0.3 dated 2018-05-22 and 1.0.4 dated 2018-06-18
DESCRIPTION | 15 - MD5 | 42 +-- NEWS.md | 13 - R/RcppExports.R | 16 - R/mega2gdsfmt.R | 19 - R/mega2genabel.R | 28 +- R/mega2genabelexternal.R | 2 R/mega2genabeltst.R | 11 - R/mega2rcreate.R | 53 ++++- R/mega2vcf.R | 11 + inst/doc/mega2rtutorial.R | 97 ++++----- inst/doc/mega2rtutorial.Rmd | 260 ++++++++++++++++++++++-- inst/doc/mega2rtutorial.html | 455 ++++++++++++++++++++++++++++--------------- inst/exdata/seqsimm.db |binary inst/exdata/seqsimr.db.gz |binary inst/exdata/srdta.db.gz |binary man/Mega2ENVGenABEL.Rd | 2 man/Mega2GenABEL.Rd | 2 man/Mega2GenABELtst.Rd | 4 src/RcppExports.cpp | 36 +-- src/getgenotypes.cpp | 70 +++--- vignettes/mega2rtutorial.Rmd | 260 ++++++++++++++++++++++-- 22 files changed, 1032 insertions(+), 364 deletions(-)
Title: Efficient Sampling for Gaussian Linear Regression with Arbitrary
Priors
Description: Efficient sampling for Gaussian linear regression with arbitrary priors, Hahn, He and Hedibert (2018) <arXiv:1806.05738>.
Author: P. Richard Hahn, Jingyu He, Hedibert Lopes
Maintainer: Jingyu He <jingyu.he@chicagobooth.edu>
Diff between bayeslm versions 0.7.0 dated 2018-02-21 and 0.8.0 dated 2018-06-18
bayeslm-0.7.0/bayeslm/R/plot.mcmc.R |only bayeslm-0.7.0/bayeslm/R/summary.mcmc.R |only bayeslm-0.8.0/bayeslm/DESCRIPTION | 10 ++-- bayeslm-0.8.0/bayeslm/MD5 | 41 +++++++++-------- bayeslm-0.8.0/bayeslm/NAMESPACE | 9 ++- bayeslm-0.8.0/bayeslm/R/RcppExports.R | 22 ++++----- bayeslm-0.8.0/bayeslm/R/bayeslm.default.R | 24 +++++----- bayeslm-0.8.0/bayeslm/R/bayeslm.formula.R | 20 ++++---- bayeslm-0.8.0/bayeslm/R/plot.MCMC.R |only bayeslm-0.8.0/bayeslm/R/predict.bayeslm.fit.R |only bayeslm-0.8.0/bayeslm/R/summary.MCMC.R |only bayeslm-0.8.0/bayeslm/R/summary.bayesm.fit.R | 2 bayeslm-0.8.0/bayeslm/man/bayeslm.Rd | 16 +++--- bayeslm-0.8.0/bayeslm/man/hs_gibbs.Rd | 5 +- bayeslm-0.8.0/bayeslm/man/plot.MCMC.Rd |only bayeslm-0.8.0/bayeslm/man/predict.bayeslm.fit.Rd |only bayeslm-0.8.0/bayeslm/man/summary.bayeslm.fit.Rd | 7 ++ bayeslm-0.8.0/bayeslm/man/summary.mcmc.Rd | 19 ++++---- bayeslm-0.8.0/bayeslm/src/RcppExports.cpp | 54 ++++++++++++----------- bayeslm-0.8.0/bayeslm/src/asymmetric.cpp | 30 ++++++++---- bayeslm-0.8.0/bayeslm/src/bayeslm.cpp | 29 ++++++++---- bayeslm-0.8.0/bayeslm/src/blasso.cpp | 26 ++++++++--- bayeslm-0.8.0/bayeslm/src/horseshoe.cpp | 28 ++++++++--- bayeslm-0.8.0/bayeslm/src/nonlocal.cpp | 27 ++++++++--- bayeslm-0.8.0/bayeslm/src/ridge.cpp | 25 ++++++++-- 25 files changed, 247 insertions(+), 147 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-22 0.1.0
Title: Access for Dryad Web Services
Description: Interface to the Dryad "Solr" API, their "OAI-PMH" service, and
fetch datasets. Dryad (<http://datadryad.org/>) is a curated host of
data underlying scientific publications.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Carl Boettiger [aut] (<https://orcid.org/0000-0002-1642-628X>),
Karthik Ram [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rdryad versions 0.3.0 dated 2017-11-06 and 0.4.0 dated 2018-06-18
rdryad-0.3.0/rdryad/NEWS |only rdryad-0.4.0/rdryad/DESCRIPTION | 23 - rdryad-0.4.0/rdryad/LICENSE | 2 rdryad-0.4.0/rdryad/MD5 | 76 ++- rdryad-0.4.0/rdryad/NAMESPACE | 3 rdryad-0.4.0/rdryad/NEWS.md |only rdryad-0.4.0/rdryad/R/defunct.R | 14 rdryad-0.4.0/rdryad/R/doi2handle.R | 3 rdryad-0.4.0/rdryad/R/download_url.r | 54 +- rdryad-0.4.0/rdryad/R/dr_get_records.R | 30 + rdryad-0.4.0/rdryad/R/dr_list_records.R | 47 +- rdryad-0.4.0/rdryad/R/dr_listidentifiers.r | 11 rdryad-0.4.0/rdryad/R/dr_listsets.r | 13 rdryad-0.4.0/rdryad/R/dryad_fetch.R | 21 - rdryad-0.4.0/rdryad/R/dryad_metadata.R |only rdryad-0.4.0/rdryad/R/dryad_package_dois.R |only rdryad-0.4.0/rdryad/R/dryad_solr.r | 54 +- rdryad-0.4.0/rdryad/R/onload.R | 2 rdryad-0.4.0/rdryad/R/rdryad-package.R | 10 rdryad-0.4.0/rdryad/R/zzz.R | 13 rdryad-0.4.0/rdryad/README.md | 203 ++++++---- rdryad-0.4.0/rdryad/inst/mets.xsd |only rdryad-0.4.0/rdryad/man/d_solr_search.Rd | 25 - rdryad-0.4.0/rdryad/man/doi2handle.Rd | 1 rdryad-0.4.0/rdryad/man/download_dryadmetadata.Rd | 2 rdryad-0.4.0/rdryad/man/download_url.Rd | 32 - rdryad-0.4.0/rdryad/man/dr_list_identifiers.Rd | 48 +- rdryad-0.4.0/rdryad/man/dr_list_records.Rd | 50 +- rdryad-0.4.0/rdryad/man/dr_list_sets.Rd | 13 rdryad-0.4.0/rdryad/man/dryad_fetch.Rd | 15 rdryad-0.4.0/rdryad/man/dryad_files.Rd |only rdryad-0.4.0/rdryad/man/dryad_metadata.Rd |only rdryad-0.4.0/rdryad/man/dryad_package_dois.Rd |only rdryad-0.4.0/rdryad/man/rdryad-package.Rd | 13 rdryad-0.4.0/rdryad/tests/testthat/test-download_url.R | 2 rdryad-0.4.0/rdryad/tests/testthat/test-dr_get_records.R | 11 rdryad-0.4.0/rdryad/tests/testthat/test-dr_identify.R | 8 rdryad-0.4.0/rdryad/tests/testthat/test-dr_list_records.R | 7 rdryad-0.4.0/rdryad/tests/testthat/test-dr_listidentifiers.R | 7 rdryad-0.4.0/rdryad/tests/testthat/test-dr_listmetadataformats.R | 7 rdryad-0.4.0/rdryad/tests/testthat/test-dr_listsets.R | 7 rdryad-0.4.0/rdryad/tests/testthat/test-dryad_fetch.R | 3 rdryad-0.4.0/rdryad/tests/testthat/test-solr.R | 18 43 files changed, 493 insertions(+), 355 deletions(-)
Title: Solve Generalized Estimating Equations
Description: GEE estimation of the parameters in mean structures with possible
correlation between the outcomes. User-specified mean link and variance
functions are allowed, along with observation weighting. The 'M' in the name
'geeM' is meant to emphasize the use of the Matrix package, which allows for an
implementation based fully in R.
Author: Lee McDaniel [aut, cre],
Nick Henderson [aut],
Melanie Prague [ctb] (Suggested code to fix weighting)
Maintainer: Lee McDaniel <lmcda4@lsuhsc.edu>
Diff between geeM versions 0.10.0 dated 2016-12-05 and 0.10.1 dated 2018-06-18
DESCRIPTION | 18 ++--- MD5 | 8 +- R/geem.R | 192 ++++++++++++++++++++++++++++---------------------------- R/updatealpha.R | 13 ++- R/utility.R | 23 ++++-- 5 files changed, 136 insertions(+), 118 deletions(-)
Title: Gaussian Process Ranking of Multiple Time Series
Description: Implements a Gaussian process (GP)-based ranking method
which can be used to rank multiple time series according to their
temporal activity levels. An example is the case when expression
levels of all genes are measured over a time course and the main
concern is to identify the most active genes, i.e. genes which
show significant non-random variation in their expression levels.
This is achieved by computing Bayes factors for each time series
by comparing the marginal likelihoods under time-dependent and
time-independent GP models. Additional variance information from
pre-processing of the observations is incorporated into the GP
models, which makes the ranking more robust against model
overfitting. The package supports exporting the results to
'tigreBrowser' for visualisation, filtering or ranking.
Author: Hande Topa [aut, cre],
Antti Honkela [aut]
Maintainer: Hande Topa <hande.topa@helsinki.fi>
Diff between GPrank versions 0.1.2 dated 2016-12-21 and 0.1.3 dated 2018-06-18
DESCRIPTION | 10 ++-- MD5 | 72 +++++++++++++++++------------------ R/bitseq_fitGPs.R | 2 R/bitseq_plotGP.R | 6 +- R/createDatabase.R | 2 R/getYlimits.R | 14 ++++-- R/plotGP.R | 21 ++++------ R/setInitParams.R | 4 - build/vignette.rds |binary inst/CITATION | 2 inst/doc/vignette.R | 4 - inst/doc/vignette.Rnw | 6 +- inst/doc/vignette.pdf |binary man/GPrank-package.Rd | 11 ++--- man/RNAseqDATA.Rd | 1 man/apply_gpTest.Rd | 1 man/bbgp_snpData.Rd | 1 man/bitseq_fitGPs.Rd | 9 ++-- man/bitseq_plotGP.Rd | 9 ++-- man/bitseq_rnaSeqData.Rd | 1 man/bitseq_setPlot.Rd | 1 man/constructModel.Rd | 1 man/createDatabase.Rd | 1 man/fixedvarianceKernCompute.Rd | 1 man/fixedvarianceKernDiagCompute.Rd | 1 man/fixedvarianceKernExpandParam.Rd | 1 man/fixedvarianceKernExtractParam.Rd | 1 man/fixedvarianceKernGradient.Rd | 1 man/fixedvarianceKernParamInit.Rd | 1 man/getColorVector.Rd | 1 man/getModelKernParams.Rd | 1 man/getYlimits.Rd | 11 +++-- man/get_bbgpMeanStd.Rd | 1 man/plotGP.Rd | 5 +- man/setInitParams.Rd | 1 man/snpData.Rd | 1 vignettes/vignette.Rnw | 6 +- 37 files changed, 105 insertions(+), 107 deletions(-)
Title: 'Shiny' Applications for the R Package 'Luminescence'
Description: A collection of 'shiny' applications for the R package
'Luminescence'. These mainly, but not exclusively, include applications for
plotting chronometric data from e.g. luminescence or radiocarbon dating. It
further provides access to bootstraps tooltip and popover functionality and
contains the 'jscolor.js' library with a custom 'shiny' output binding.
Author: Christoph Burow [aut, cre],
Urs Tilmann Wolpert [aut],
Sebastian Kreutzer [aut] (<https://orcid.org/0000-0002-0734-2199>),
R Luminescence Package Team [ctb],
Jan Odvarko [cph] (jscolor.js in www/jscolor),
AnalytixWare [cph] (ShinySky package),
RStudio [cph] (chooser_inputBinding.js in www/ and chooser.R in R/)
Maintainer: Christoph Burow <christoph.burow@uni-koeln.de>
Diff between RLumShiny versions 0.2.0 dated 2017-06-26 and 0.2.1 dated 2018-06-18
RLumShiny-0.2.0/RLumShiny/inst/shiny/KDE/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/abanico/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/cosmicdose/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/doserecovery/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/histogram/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/radialplot/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/transformCW/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/transformCW/Server.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/transformCW/UI.R |only RLumShiny-0.2.1/RLumShiny/DESCRIPTION | 32 - RLumShiny-0.2.1/RLumShiny/MD5 | 92 ++- RLumShiny-0.2.1/RLumShiny/NAMESPACE | 4 RLumShiny-0.2.1/RLumShiny/NEWS | 31 + RLumShiny-0.2.1/RLumShiny/R/RLumShiny.R | 1 RLumShiny-0.2.1/RLumShiny/R/addin.R | 150 ++--- RLumShiny-0.2.1/RLumShiny/R/app_RLum.R | 73 +- RLumShiny-0.2.1/RLumShiny/R/module_aboutTab.R |only RLumShiny-0.2.1/RLumShiny/R/module_exportTab.R |only RLumShiny-0.2.1/RLumShiny/R/module_printCode.R |only RLumShiny-0.2.1/RLumShiny/inst/shiny/KDE/global.R |only RLumShiny-0.2.1/RLumShiny/inst/shiny/KDE/server.R | 309 +++------- RLumShiny-0.2.1/RLumShiny/inst/shiny/KDE/ui.R | 61 -- RLumShiny-0.2.1/RLumShiny/inst/shiny/abanico/global.R |only RLumShiny-0.2.1/RLumShiny/inst/shiny/abanico/server.R | 300 ++-------- RLumShiny-0.2.1/RLumShiny/inst/shiny/abanico/ui.R | 64 -- RLumShiny-0.2.1/RLumShiny/inst/shiny/convert |only RLumShiny-0.2.1/RLumShiny/inst/shiny/cosmicdose/global.R |only RLumShiny-0.2.1/RLumShiny/inst/shiny/cosmicdose/server.R | 4 RLumShiny-0.2.1/RLumShiny/inst/shiny/doserecovery/global.R |only RLumShiny-0.2.1/RLumShiny/inst/shiny/doserecovery/server.R | 265 +++----- RLumShiny-0.2.1/RLumShiny/inst/shiny/doserecovery/ui.R | 58 - RLumShiny-0.2.1/RLumShiny/inst/shiny/fading |only RLumShiny-0.2.1/RLumShiny/inst/shiny/fastratio |only RLumShiny-0.2.1/RLumShiny/inst/shiny/filter/server.R | 8 RLumShiny-0.2.1/RLumShiny/inst/shiny/filter/ui.R | 18 RLumShiny-0.2.1/RLumShiny/inst/shiny/histogram/global.R |only RLumShiny-0.2.1/RLumShiny/inst/shiny/histogram/server.R | 224 +------ RLumShiny-0.2.1/RLumShiny/inst/shiny/histogram/ui.R | 65 -- RLumShiny-0.2.1/RLumShiny/inst/shiny/radialplot/global.R |only RLumShiny-0.2.1/RLumShiny/inst/shiny/radialplot/server.R | 388 ++++--------- RLumShiny-0.2.1/RLumShiny/inst/shiny/radialplot/ui.R | 63 -- RLumShiny-0.2.1/RLumShiny/inst/shiny/surfaceexposure |only RLumShiny-0.2.1/RLumShiny/inst/shiny/teststimulationpower |only RLumShiny-0.2.1/RLumShiny/inst/shiny/transformCW/global.R |only RLumShiny-0.2.1/RLumShiny/inst/shiny/transformCW/server.R |only RLumShiny-0.2.1/RLumShiny/inst/shiny/transformCW/ui.R |only RLumShiny-0.2.1/RLumShiny/inst/www/chooser_inputBinding.js | 41 + RLumShiny-0.2.1/RLumShiny/man/app_RLum.Rd | 9 48 files changed, 766 insertions(+), 1494 deletions(-)
Title: Simulations and Statistical Inference for Linear Fractional
Stable Motions
Description: Contains functions for simulating linear fractional stable motions, according to techniques developed by Stoev and Taqqu (2004) <doi:10.1142/S0218348X04002379>, as well as functions for computing important statistics used with these processes introduced by Mazur, Otryakhin and Podolskij (2018) <arXiv:1802.06373>, and also different quantities related to those statistics.
Author: Dmitry Otryakhin [aut, cre],
Stepan Mazur [aut]
Maintainer: Dmitry Otryakhin <d.otryakhin.acad@protonmail.ch>
Diff between rlfsm versions 0.1.0 dated 2018-03-15 and 0.2.0 dated 2018-06-18
rlfsm-0.1.0/rlfsm/R/CLT_new.R |only rlfsm-0.2.0/rlfsm/DESCRIPTION | 8 - rlfsm-0.2.0/rlfsm/MD5 | 23 +-- rlfsm-0.2.0/rlfsm/NEWS.md |only rlfsm-0.2.0/rlfsm/R/CLT.R |only rlfsm-0.2.0/rlfsm/R/PLot_bias_and_variance_of_an_estimate.r | 4 rlfsm-0.2.0/rlfsm/R/Plot_function_for_empirical_distributions.R | 9 - rlfsm-0.2.0/rlfsm/R/limit_theorems.R | 2 rlfsm-0.2.0/rlfsm/R/sample_path_generator.r | 67 ++++++++++ rlfsm-0.2.0/rlfsm/build/partial.rdb |binary rlfsm-0.2.0/rlfsm/man/CLT.Rd | 22 ++- rlfsm-0.2.0/rlfsm/man/ContinEstim.Rd | 2 rlfsm-0.2.0/rlfsm/man/Plot_dens.Rd | 6 rlfsm-0.2.0/rlfsm/man/Plot_vb.Rd | 4 14 files changed, 114 insertions(+), 33 deletions(-)
Title: Get Data from the 'KOF Datenservice' API
Description: Read Swiss time series data from the 'KOF Datenservice' API, <https://datenservice.kof.ethz.ch>. The API provides macroeconomic survey data, business cycle and further macro economic time series about Switzerland. The package itself is a set of wrappers around the 'KOF Datenservice' API. The 'kofdata' package is able to consume public information as well as data that requires an API token.
Author: Matthias Bannert [aut, cre],
Severin Thoeni [aut]
Maintainer: Matthias Bannert <bannert@kof.ethz.ch>
Diff between kofdata versions 0.1.3 dated 2018-02-05 and 0.1.3.1 dated 2018-06-18
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 1 + tests/testthat/test_get_metadata.R | 10 +++++----- 4 files changed, 13 insertions(+), 12 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-12 1.1.5
2017-11-28 1.0.0
2017-04-26 0.3.1.6
Title: Linear Group Fixed Effects
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors with many levels as pure control variables.
Includes support for instrumental variables, conditional F statistics for weak instruments,
robust and multi-way clustered standard errors, as well as limited mobility bias correction.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure <Simen.Gaure@frisch.uio.no>
Diff between lfe versions 2.6-2291 dated 2018-02-16 and 2.7-2383 dated 2018-06-18
lfe-2.6-2291/lfe/tests/Examples |only lfe-2.7-2383/lfe/DESCRIPTION | 12 lfe-2.7-2383/lfe/MD5 | 49 - lfe-2.7-2383/lfe/R/demeanlist.R | 68 + lfe-2.7-2383/lfe/R/felm.R | 10 lfe-2.7-2383/lfe/R/nlexpect.R | 175 ++- lfe-2.7-2383/lfe/R/utils.R | 81 + lfe-2.7-2383/lfe/build/vignette.rds |binary lfe-2.7-2383/lfe/configure | 1223 +++++++++++++++++++++++++-- lfe-2.7-2383/lfe/configure.ac | 18 lfe-2.7-2383/lfe/inst/NEWS.Rd | 12 lfe-2.7-2383/lfe/inst/doc/biascorrection.pdf |binary lfe-2.7-2383/lfe/inst/doc/identification.pdf |binary lfe-2.7-2383/lfe/inst/doc/lfehow.pdf |binary lfe-2.7-2383/lfe/inst/doc/speed.pdf |binary lfe-2.7-2383/lfe/man/chainsubset.Rd | 33 lfe-2.7-2383/lfe/man/demeanlist.Rd | 23 lfe-2.7-2383/lfe/man/nlexpect.Rd | 52 - lfe-2.7-2383/lfe/src/config.h | 4 lfe-2.7-2383/lfe/src/demean.c | 45 lfe-2.7-2383/lfe/src/lfe.c | 3 lfe-2.7-2383/lfe/src/lfe.h | 2 lfe-2.7-2383/lfe/src/utils.c | 2 lfe-2.7-2383/lfe/tests/anomalies.R | 19 lfe-2.7-2383/lfe/tests/anomalies.Rout.save | 56 + lfe-2.7-2383/lfe/tests/multiway.Rout.save | 32 26 files changed, 1622 insertions(+), 297 deletions(-)
Title: Access 'Nomis' UK Labour Market Data
Description: Access UK official statistics from the 'Nomis' database.
'Nomis' includes data from the Census, the Labour Force Survey, DWP benefit
statistics and other economic and demographic data from the Office for
National Statistics, based around statistical geographies. See
<https://www.nomisweb.co.uk/api/v01/help> for full API documentation.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>),
Paul Egeler [rev, ctb],
Christophe Dervieux [rev] (<https://orcid.org/0000-0003-4474-2498>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between nomisr versions 0.2.0 dated 2018-04-19 and 0.3.0 dated 2018-06-18
nomisr-0.2.0/nomisr/R/utils-base_urls.R |only nomisr-0.3.0/nomisr/DESCRIPTION | 11 nomisr-0.3.0/nomisr/LICENSE | 4 nomisr-0.3.0/nomisr/MD5 | 78 nomisr-0.3.0/nomisr/NAMESPACE | 41 nomisr-0.3.0/nomisr/NEWS.md | 80 nomisr-0.3.0/nomisr/R/api-key.R | 98 nomisr-0.3.0/nomisr/R/codelist.R |only nomisr-0.3.0/nomisr/R/content_type.R | 101 nomisr-0.3.0/nomisr/R/data_download.R | 601 +- nomisr-0.3.0/nomisr/R/dataset_info.R | 81 nomisr-0.3.0/nomisr/R/metadata.R | 250 - nomisr-0.3.0/nomisr/R/nomisr-package.R | 74 nomisr-0.3.0/nomisr/R/overview.R | 178 nomisr-0.3.0/nomisr/R/search.R | 206 nomisr-0.3.0/nomisr/R/utils-base-urls.R |only nomisr-0.3.0/nomisr/R/utils-get-data.R | 84 nomisr-0.3.0/nomisr/R/utils-query.R | 60 nomisr-0.3.0/nomisr/README.md | 404 - nomisr-0.3.0/nomisr/build/vignette.rds |binary nomisr-0.3.0/nomisr/inst/CITATION | 18 nomisr-0.3.0/nomisr/inst/doc/introduction.R | 168 nomisr-0.3.0/nomisr/inst/doc/introduction.Rmd | 364 - nomisr-0.3.0/nomisr/inst/doc/introduction.html | 3685 ++++++++--------- nomisr-0.3.0/nomisr/man/nomis_api_key.Rd | 58 nomisr-0.3.0/nomisr/man/nomis_codelist.Rd |only nomisr-0.3.0/nomisr/man/nomis_content_type.Rd | 82 nomisr-0.3.0/nomisr/man/nomis_data_info.Rd | 84 nomisr-0.3.0/nomisr/man/nomis_get_data.Rd | 325 - nomisr-0.3.0/nomisr/man/nomis_get_metadata.Rd | 162 nomisr-0.3.0/nomisr/man/nomis_overview.Rd | 156 nomisr-0.3.0/nomisr/man/nomis_search.Rd | 112 nomisr-0.3.0/nomisr/man/nomisr.Rd | 42 nomisr-0.3.0/nomisr/tests/testthat.R | 8 nomisr-0.3.0/nomisr/tests/testthat/test-load.R | 12 nomisr-0.3.0/nomisr/tests/testthat/test_content_type.R | 42 nomisr-0.3.0/nomisr/tests/testthat/test_data_info.R | 62 nomisr-0.3.0/nomisr/tests/testthat/test_get_data.R | 152 nomisr-0.3.0/nomisr/tests/testthat/test_get_metadata.R | 92 nomisr-0.3.0/nomisr/tests/testthat/test_overview.R | 38 nomisr-0.3.0/nomisr/tests/testthat/test_search.R | 80 nomisr-0.3.0/nomisr/vignettes/introduction.Rmd | 364 - 42 files changed, 4284 insertions(+), 4173 deletions(-)
Title: Class-Agnostic Time Series
Description: Time series toolkit with identical behavior for all
time series classes: 'ts','xts', 'data.frame', 'data.table', 'tibble', 'zoo',
'timeSeries', 'tsibble'. Also converts reliably between these classes.
Author: Christoph Sax [aut, cre]
Maintainer: Christoph Sax <christoph.sax@gmail.com>
Diff between tsbox versions 0.0.2 dated 2018-05-14 and 0.0.3 dated 2018-06-18
DESCRIPTION | 12 ++-- MD5 | 78 +++++++++++++++---------------- NAMESPACE | 3 + NEWS.md | 15 +++++ R/convert_heuristic.R | 20 +++---- R/dts.R | 2 R/guess_time_var_value.R | 7 ++ R/to_from_tibbletime.R |only R/to_from_ts.R | 6 -- R/to_from_tsibble.R | 2 R/ts_c.R | 61 +++++++++++++++--------- R/ts_lag.R | 2 README.md | 13 +++-- inst/doc/convert.Rmd | 3 - inst/doc/convert.html | 3 - inst/doc/tsbox.Rmd | 15 +++-- inst/doc/tsbox.html | 15 +++-- man/copy_class.Rd | 2 man/relevant_class.Rd | 2 man/ts_.Rd | 2 man/ts_boxable.Rd | 2 man/ts_dts.Rd | 2 man/ts_examples.Rd | 2 man/ts_frequency.Rd | 2 man/ts_index.Rd | 2 man/ts_lag.Rd | 4 - man/ts_na_omit.Rd | 2 man/ts_pc.Rd | 2 man/ts_pick.Rd | 2 man/ts_span.Rd | 2 man/ts_trend.Rd | 2 man/ts_ts.Rd | 11 +++- tests/testthat/test_auto.R | 3 - tests/testthat/test_nonstandard_cnames.R | 5 + tests/testthat/test_tricky.R | 23 +++++++++ tests/testthat/test_ts_high_freq.R | 12 ++-- tests/testthat/test_ts_index.R | 2 tests/testthat/test_ts_low_freq.R | 22 +++++--- tests/testthat/test_ts_tzone.R |only vignettes/convert.Rmd | 3 - vignettes/tsbox.Rmd | 15 +++-- 41 files changed, 234 insertions(+), 149 deletions(-)
Title: Circular Drift-Diffusion Model
Description: Circular drift-diffusion model for continuous reports.
Author: Yi-Shin Lin [aut, cre],
Andrew Heathcote [aut],
Peter Kvam [aut]
Maintainer: Yi-Shin Lin <yishin.lin@utas.edu.au>
Diff between CircularDDM versions 0.0.9 dated 2017-04-04 and 0.1.0 dated 2018-06-18
CircularDDM-0.0.9/CircularDDM/inst/matlab |only CircularDDM-0.0.9/CircularDDM/src/init.c |only CircularDDM-0.1.0/CircularDDM/DESCRIPTION | 8 ++--- CircularDDM-0.1.0/CircularDDM/MD5 | 33 ++++------------------ CircularDDM-0.1.0/CircularDDM/R/RcppExports.R | 12 ++++---- CircularDDM-0.1.0/CircularDDM/cleanup | 2 - CircularDDM-0.1.0/CircularDDM/man/CircularDDM.Rd | 4 +- CircularDDM-0.1.0/CircularDDM/src/RcppExports.cpp | 27 ++++++++++++++---- CircularDDM-0.1.0/CircularDDM/tests |only 9 files changed, 40 insertions(+), 46 deletions(-)