Title: Lab for Developing and Testing Recommender Algorithms
Description: Provides a research infrastructure to test and develop
recommender algorithms including UBCF, IBCF, FunkSVD and association
rule-based algorithms.
Author: Michael Hahsler [aut, cre, cph],
Bregt Vereet [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between recommenderlab versions 0.2-2 dated 2017-04-05 and 0.2-3 dated 2018-06-19
recommenderlab-0.2-2/recommenderlab/R/RECOM_BIN_AR.R |only recommenderlab-0.2-3/recommenderlab/DESCRIPTION | 8 - recommenderlab-0.2-3/recommenderlab/MD5 | 42 +++--- recommenderlab-0.2-3/recommenderlab/NEWS.md | 9 + recommenderlab-0.2-3/recommenderlab/R/HybridRecommender.R | 2 recommenderlab-0.2-3/recommenderlab/R/RECOM_ALS.R | 48 +----- recommenderlab-0.2-3/recommenderlab/R/RECOM_AR.R |only recommenderlab-0.2-3/recommenderlab/R/RECOM_UBCF.R | 2 recommenderlab-0.2-3/recommenderlab/R/binaryRatingMatrix.R | 17 +- recommenderlab-0.2-3/recommenderlab/R/evaluate.R | 2 recommenderlab-0.2-3/recommenderlab/R/ratingMatrix.R | 6 recommenderlab-0.2-3/recommenderlab/README.md | 11 + recommenderlab-0.2-3/recommenderlab/build/vignette.rds |binary recommenderlab-0.2-3/recommenderlab/data/Jester5k.rda |binary recommenderlab-0.2-3/recommenderlab/data/MSWeb.rda |binary recommenderlab-0.2-3/recommenderlab/data/MovieLense.rda |binary recommenderlab-0.2-3/recommenderlab/inst/doc/recommenderlab.R | 70 +++++----- recommenderlab-0.2-3/recommenderlab/inst/doc/recommenderlab.Rnw | 16 ++ recommenderlab-0.2-3/recommenderlab/inst/doc/recommenderlab.pdf |binary recommenderlab-0.2-3/recommenderlab/man/HybridRecommender.Rd | 13 + recommenderlab-0.2-3/recommenderlab/man/evaluate.Rd | 2 recommenderlab-0.2-3/recommenderlab/man/evaluationScheme.Rd | 16 +- recommenderlab-0.2-3/recommenderlab/vignettes/recommenderlab.Rnw | 16 ++ 23 files changed, 154 insertions(+), 126 deletions(-)
More information about recommenderlab at CRAN
Permanent link
Title: Income Concentration Analysis with Complex Survey Samples
Description: Variance estimation on indicators of income concentration and
poverty using complex sample survey designs. Wrapper around the
survey package.
Author: Djalma Pessoa [aut, cre],
Anthony Damico [aut],
Guilherme Jacob [aut]
Maintainer: Djalma Pessoa <pessoad@gmail.com>
Diff between convey versions 0.2.0 dated 2017-04-17 and 0.2.1 dated 2018-06-19
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/svyamato.R | 2 +- R/svyzenga.R | 2 +- man/svyamato.Rd | 2 +- man/svyzenga.Rd | 2 +- tests/testthat/test-svyatk.R | 8 +++++--- 7 files changed, 18 insertions(+), 16 deletions(-)
Title: Acquisition and Processing of NASA Soil Moisture Active-Passive
(SMAP) Data
Description: Facilitates programmatic access to NASA Soil Moisture Active
Passive (SMAP) data with R. It includes functions to search for, acquire,
and extract SMAP data.
Author: Maxwell Joseph [aut, cre],
Matthew Oakley [aut],
Zachary Schira [aut]
Maintainer: Maxwell Joseph <maxwell.b.joseph@colorado.edu>
Diff between smapr versions 0.1.1 dated 2017-10-20 and 0.1.2 dated 2018-06-19
smapr-0.1.1/smapr/inst/img/unnamed-chunk-8-1.png |only smapr-0.1.2/smapr/DESCRIPTION | 11 - smapr-0.1.2/smapr/MD5 | 33 +-- smapr-0.1.2/smapr/NAMESPACE | 5 smapr-0.1.2/smapr/NEWS.md | 6 smapr-0.1.2/smapr/R/download_smap.R | 2 smapr-0.1.2/smapr/R/extract_smap.R | 82 ++++++- smapr-0.1.2/smapr/R/find_smap.R | 1 smapr-0.1.2/smapr/R/smapr-package.R | 2 smapr-0.1.2/smapr/README.md | 207 +++---------------- smapr-0.1.2/smapr/build |only smapr-0.1.2/smapr/inst/doc |only smapr-0.1.2/smapr/inst/img/extract-data-1.png |only smapr-0.1.2/smapr/man/download_smap.Rd | 2 smapr-0.1.2/smapr/man/find_smap.Rd | 1 smapr-0.1.2/smapr/man/smapr-package.Rd | 2 smapr-0.1.2/smapr/tests/testthat/test-extract_smap.R | 28 ++ smapr-0.1.2/smapr/tests/testthat/test-find_smap.R | 8 smapr-0.1.2/smapr/vignettes |only 19 files changed, 180 insertions(+), 210 deletions(-)
Title: Fractional ARIMA (and Other Long Memory) Time Series Modeling
Description: Simulates, fits, and predicts long-memory and anti-persistent
time series, possibly mixed with ARMA, regression, transfer-function
components.
Exact methods (MLE, forecasting, simulation) are used.
Bug reports should be done via GitHub (at
<https://github.com/JQVeenstra/arfima>), where the development version
of this package lives; it can be installed using devtools.
Author: JQ (Justin) Veenstra [aut, cre], A.I. McLeod [aut]
Maintainer: JQ Veenstra <jqveenstra@gmail.com>
Diff between arfima versions 1.6-6 dated 2018-01-06 and 1.6-7 dated 2018-06-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/utilityfcns.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Functions and R Code to Accompany Derivatives Markets
Description: A set of pricing and expository functions that should
be useful in teaching a course on financial derivatives.
Author: Robert McDonald [aut, cre, cph]
Maintainer: Robert McDonald <rmcd1024@gmail.com>
Diff between derivmkts versions 0.2.2.1 dated 2018-04-05 and 0.2.3 dated 2018-06-19
DESCRIPTION | 8 +- MD5 | 43 ++++++------ NAMESPACE | 1 NEWS.md | 31 +++++++- R/barriers.R | 16 ++-- R/blksch.R | 5 + R/greeks.R | 117 ++++++++++++++++++++------------- build/vignette.rds |binary inst/doc/Notes-on-vectorization.R | 9 ++ inst/doc/Notes-on-vectorization.Rnw | 39 ++++++++--- inst/doc/Notes-on-vectorization.pdf |binary inst/doc/derivmkts-vignette.R | 6 - inst/doc/derivmkts-vignette.Rnw | 6 - inst/doc/derivmkts-vignette.pdf |binary man/barriers.Rd | 16 ++-- man/blksch.Rd | 5 + man/greeks.Rd | 35 +++++---- tests/testthat/greeks_tests.R | 20 ++--- tests/testthat/implied_test.html |only tests/testthat/option_testvalues.Rdata |binary tests/testthat/perpetual_tests.R | 3 vignettes/Notes-on-vectorization.Rnw | 39 ++++++++--- vignettes/derivmkts-vignette.Rnw | 6 - 23 files changed, 252 insertions(+), 153 deletions(-)
Title: A Test Environment for HTTP Requests
Description: Testing and documenting code that communicates with remote servers
can be painful. Dealing with authentication, server state,
and other complications can make testing seem too costly to
bother with. But it doesn't need to be that hard. This package enables one
to test all of the logic on the R sides of the API in your package without
requiring access to the remote service. Importantly, it provides three
contexts that mock the network connection in different ways, as well as
testing functions to assert that HTTP requests were---or were
not---made. It also allows one to safely record real API responses to use as
test fixtures. The ability to save responses and load them offline also
enables one to write vignettes and other dynamic documents that can be
distributed without access to a live server.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal.p.richardson@gmail.com>
Diff between httptest versions 3.0.0 dated 2018-01-16 and 3.1.0 dated 2018-06-19
DESCRIPTION | 10 MD5 | 90 +- NAMESPACE | 6 NEWS.md | 22 R/capture-requests.R | 106 ++- R/content-type.R |only R/fake-http.R | 12 R/mock-api.R | 103 +-- R/mock-paths.R | 9 R/offline.R | 2 R/redact.R | 59 - R/trace.R | 25 R/vignette.R | 32 R/without-internet.R | 6 README.md | 92 +- build/vignette.rds |binary inst/WORDLIST | 6 inst/doc/httptest.Rmd | 23 inst/doc/httptest.html | 596 ++++++++++++------ inst/doc/redacting.Rmd | 135 +--- inst/doc/redacting.html | 480 +++++++++----- inst/doc/vignettes.Rmd | 14 inst/doc/vignettes.html | 354 +++++++--- man/build_mock_url.Rd | 43 - man/capture_requests.Rd | 27 man/change_state.Rd | 16 man/fake_response.Rd | 6 man/redact.Rd | 12 man/save_response.Rd | 1 man/start_vignette.Rd | 12 man/with_fake_http.Rd | 4 man/with_trace.Rd | 3 tests/testthat/api/object1.json | 4 tests/testthat/helper.R | 12 tests/testthat/httpbin.org/response-headers-b8a5cc.R |only tests/testthat/httpbin.org/status |only tests/testthat/test-capture-requests.R | 89 ++ tests/testthat/test-content-type.R |only tests/testthat/test-find-redactor.R | 20 tests/testthat/test-mock-api.R | 23 tests/testthat/test-redact.R | 71 +- tests/testthat/test-trace.R | 7 tests/testthat/test-vignette.R | 11 tests/testthat/test-without-internet.R | 14 tests/testthat/testpkg/inst/httptest/end-vignette.R |only tests/testthat/testpkg/inst/httptest/start-vignette.R |only vignettes/httptest.Rmd | 23 vignettes/redacting.Rmd | 135 +--- vignettes/vignettes.Rmd | 14 49 files changed, 1669 insertions(+), 1060 deletions(-)
Title: Class and Methods for Hyperspectral Data
Description: Input/Output, processing and visualization of spectra taken with different spectrometers, including SVC (Spectra Vista), ASD and PSR (Spectral Evolution). Implements an S3 class 'spectra' that other packages can build on. Provides methods to access, plot, manipulate, splice sensor overlap, vector normalize and smooth spectra.
Author: Jose Eduardo Meireles [aut, cre],
Anna K. Schweiger [aut],
Jeannine Cavender-Bares [aut]
Maintainer: Jose Eduardo Meireles <meireles@umn.edu>
Diff between spectrolab versions 0.0.5 dated 2018-06-02 and 0.0.6 dated 2018-06-19
spectrolab-0.0.5/spectrolab/inst/doc/advanced_spectrolab.html |only spectrolab-0.0.5/spectrolab/inst/doc/introduction_to_spectrolab.html |only spectrolab-0.0.5/spectrolab/man/enforce01-set.Rd |only spectrolab-0.0.5/spectrolab/man/enforce01.Rd |only spectrolab-0.0.5/spectrolab/tests/testthat/test_enforce01_reflectance.R |only spectrolab-0.0.5/spectrolab/vignettes/advanced_spectrolab_files |only spectrolab-0.0.5/spectrolab/vignettes/introduction_to_spectrolab_files |only spectrolab-0.0.6/spectrolab/DESCRIPTION | 8 spectrolab-0.0.6/spectrolab/MD5 | 159 ++++------ spectrolab-0.0.6/spectrolab/NAMESPACE | 4 spectrolab-0.0.6/spectrolab/NEWS.md | 11 spectrolab-0.0.6/spectrolab/R/conversion.R | 42 +- spectrolab-0.0.6/spectrolab/R/descrip_summary_overloads.R | 14 spectrolab-0.0.6/spectrolab/R/getters_and_setters.R | 97 ------ spectrolab-0.0.6/spectrolab/R/math_operator_overloads.R | 4 spectrolab-0.0.6/spectrolab/R/plotting_functions.R | 8 spectrolab-0.0.6/spectrolab/R/query.R | 4 spectrolab-0.0.6/spectrolab/R/spectra.R | 17 - spectrolab-0.0.6/spectrolab/R/stats_function_overloads.R | 10 spectrolab-0.0.6/spectrolab/R/transform_spectra.R | 116 ++++--- spectrolab-0.0.6/spectrolab/R/utils.R | 2 spectrolab-0.0.6/spectrolab/README.md | 11 spectrolab-0.0.6/spectrolab/build/vignette.rds |binary spectrolab-0.0.6/spectrolab/inst/doc/advanced_spectrolab.Rmd | 6 spectrolab-0.0.6/spectrolab/inst/doc/advanced_spectrolab.pdf |only spectrolab-0.0.6/spectrolab/inst/doc/introduction_to_spectrolab.Rmd | 7 spectrolab-0.0.6/spectrolab/inst/doc/introduction_to_spectrolab.pdf |only spectrolab-0.0.6/spectrolab/inst/doc/match_sensors.pdf |binary spectrolab-0.0.6/spectrolab/man/Ops.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/aggregate.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/apply_by_band.Rd | 2 spectrolab-0.0.6/spectrolab/man/as.data.frame.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/as.matrix.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/as.spectra.Rd | 10 spectrolab-0.0.6/spectrolab/man/as.spectra.data.frame.Rd | 6 spectrolab-0.0.6/spectrolab/man/as.spectra.matrix.Rd | 4 spectrolab-0.0.6/spectrolab/man/combine.Rd | 6 spectrolab-0.0.6/spectrolab/man/dim.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/has_nir_dip.Rd | 2 spectrolab-0.0.6/spectrolab/man/i_reflectance.Rd | 5 spectrolab-0.0.6/spectrolab/man/is_spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/max.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/mean.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/median.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/meta-set.Rd | 2 spectrolab-0.0.6/spectrolab/man/meta.Rd | 2 spectrolab-0.0.6/spectrolab/man/min.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/names-set-.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/names.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/normalize.Rd | 2 spectrolab-0.0.6/spectrolab/man/plot.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/plot_interactive.Rd | 2 spectrolab-0.0.6/spectrolab/man/plot_quantile.Rd | 2 spectrolab-0.0.6/spectrolab/man/plot_regions.Rd | 2 spectrolab-0.0.6/spectrolab/man/print.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/quantile.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/range.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/ratio.Rd | 2 spectrolab-0.0.6/spectrolab/man/reflectance-set.Rd | 2 spectrolab-0.0.6/spectrolab/man/reflectance.Rd | 2 spectrolab-0.0.6/spectrolab/man/resample.Rd | 2 spectrolab-0.0.6/spectrolab/man/sd.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/smooth.Rd | 2 spectrolab-0.0.6/spectrolab/man/spectra.Rd | 5 spectrolab-0.0.6/spectrolab/man/split.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/str.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/sub-.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/subset-.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/subset_by.Rd | 10 spectrolab-0.0.6/spectrolab/man/summary.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/t.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/var.spectra.Rd | 2 spectrolab-0.0.6/spectrolab/man/wavelengths-set.Rd | 2 spectrolab-0.0.6/spectrolab/man/wavelengths.Rd | 2 spectrolab-0.0.6/spectrolab/tests/testthat/test_combine.R | 2 spectrolab-0.0.6/spectrolab/tests/testthat/test_conversion.R | 8 spectrolab-0.0.6/spectrolab/tests/testthat/test_spectra_subset.R | 2 spectrolab-0.0.6/spectrolab/tests/testthat/test_stats_overloads.R | 2 spectrolab-0.0.6/spectrolab/tests/testthat/test_subset_by.R | 10 spectrolab-0.0.6/spectrolab/tests/testthat/test_transpose.R | 2 spectrolab-0.0.6/spectrolab/vignettes/advanced_spectrolab.Rmd | 6 spectrolab-0.0.6/spectrolab/vignettes/introduction_to_spectrolab.Rmd | 7 82 files changed, 311 insertions(+), 372 deletions(-)
Title: SPArse Matrix
Description: Set of functions for sparse matrix algebra.
Differences with other sparse matrix packages are:
(1) we only support (essentially) one sparse matrix format,
(2) based on transparent and simple structure(s),
(3) tailored for MCMC calculations within G(M)RF.
(4) and it is fast and scalable (with the extension package spam64).
Author: Reinhard Furrer [aut, cre],
Florian Gerber [ctb],
Roman Flury [ctb],
Daniel Gerber [ctb],
Kaspar Moesinger [ctb],
Youcef Saad [ctb] (SPARSEKIT
http://www-users.cs.umn.edu/~saad/software/SPARSKIT/),
Esmond G. Ng [ctb] (Fortran Cholesky routines),
Barry W. Peyton [ctb] (Fortran Cholesky routines),
Joseph W.H. Liu [ctb] (Fortran Cholesky routines),
Alan D. George [ctb] (Fortran Cholesky routines),
Lehoucq B. Rich [ctb] (ARPACK),
Maschhoff Kristi [ctb] (ARPACK),
Sorensen C. Danny [ctb] (ARPACK),
Yang Chao [ctb] (ARPACK)
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>
Diff between spam versions 2.1-4 dated 2018-04-12 and 2.2-0 dated 2018-06-19
DESCRIPTION | 46 ++++++++++++++++----------- LICENSE |only MD5 | 51 ++++++++++++++++++------------ NAMESPACE | 3 + R/eigen.R |only R/s3only.R | 7 ---- build/vignette.rds |binary inst/NEWS | 25 ++++++++++++++ man/eigen.Rd |only man/s3only.Rd | 6 --- src/Makevars | 4 +- src/debug.h |only src/dgetv0.f |only src/dn_ARPACK.f |only src/dn_eigen.f |only src/ds_ARPACK.f |only src/ds_eigen.f |only src/errpr.f |only src/fromsparsekit.f | 31 ++++++++++++++++++ src/init.c | 6 +++ src/second.f |only src/stat.h |only tests/demo_article-jss-example1.Rout.save | 6 +-- tests/demo_article-jss-example2.Rout.save | 6 +-- tests/demo_article-jss.Rout.save | 6 +-- tests/demo_cholesky.Rout.save | 6 +-- tests/demo_jss15-BYM.Rout.save | 6 +-- tests/demo_jss15-Leroux.Rout.save | 6 +-- tests/demo_spam.Rout.save | 6 +-- tests/demo_timing.Rout.save | 6 +-- tests/jss_areal_counts.Rout.save | 6 +-- tests/testthat/helper.R | 2 - tests/testthat/test-eigen.R |only 33 files changed, 155 insertions(+), 80 deletions(-)
Title: 64-Bit Extension of the SPArse Matrix R Package 'spam'
Description: Provides the Fortran code of the R package 'spam'
with 64-bit integers. Loading this package together with the R package
spam enables the sparse matrix class spam to handle huge sparse matrices
with more than 2^31-1 non-zero elements.
Author: Reinhard Furrer [aut, cre],
Florian Gerber [ctb],
Roman Flury [ctb],
Daniel Gerber [ctb],
Kaspar Moesinger [ctb],
Youcef Saad [ctb] (SPARSEKIT
http://www-users.cs.umn.edu/~saad/software/SPARSKIT/),
Esmond G. Ng [ctb] (Fortran Cholesky routines),
Barry W. Peyton [ctb] (Fortran Cholesky routines),
Joseph W.H. Liu [ctb] (Fortran Cholesky routines),
Alan D. George [ctb] (Fortran Cholesky routines),
Lehoucq B. Rich [ctb] (ARPACK),
Maschhoff Kristi [ctb] (ARPACK),
Sorensen C. Danny [ctb] (ARPACK),
Yang Chao [ctb] (ARPACK)
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>
Diff between spam64 versions 2.1-4 dated 2018-04-12 and 2.2-0 dated 2018-06-19
DESCRIPTION | 47 +++++++++++++++++++++++++++++------------------ LICENSE |only MD5 | 18 ++++++++++++++---- src/Makevars | 8 +++++--- src/debug.h |only src/dgetv0.f |only src/dn_ARPACK.f |only src/dn_eigen.f |only src/ds_ARPACK.f |only src/ds_eigen.f |only src/errpr.f |only src/fromsparsekit.f | 31 +++++++++++++++++++++++++++++++ src/init.c | 2 ++ src/second.f |only src/stat.h |only 15 files changed, 81 insertions(+), 25 deletions(-)
Title: Selection of Number of Clusters via Normalized Clustering
Instability
Description: Selection of the number of clusters in cluster analysis using
stability methods.
Author: Jonas M. B. Haslbeck, Dirk U. Wulff
Maintainer: Jonas M. B. Haslbeck <jonas.haslbeck@gmail.com>
Diff between cstab versions 0.2-1 dated 2017-07-04 and 0.2-2 dated 2018-06-19
cstab-0.2-1/cstab/NEWS |only cstab-0.2-2/cstab/DESCRIPTION | 12 +++++----- cstab-0.2-2/cstab/MD5 | 23 +++++++++----------- cstab-0.2-2/cstab/R/RcppExports.R | 16 +++++++------- cstab-0.2-2/cstab/man/cDistance.Rd | 9 +++----- cstab-0.2-2/cstab/man/cStability.Rd | 9 +++----- cstab-0.2-2/cstab/man/cluster_example.Rd | 1 cstab-0.2-2/cstab/man/cstab.Rd | 1 cstab-0.2-2/cstab/man/lookup.Rd | 1 cstab-0.2-2/cstab/man/plot.cstab.Rd | 1 cstab-0.2-2/cstab/man/print.cstab.Rd | 1 cstab-0.2-2/cstab/src/RcppExports.cpp | 32 ++++++++++++++--------------- cstab-0.2-2/cstab/src/instabCorrection.cpp | 2 - 13 files changed, 50 insertions(+), 58 deletions(-)
Title: Structural Equation and Twin Modeling in R
Description: Quickly create, run, and report structural equation and twin models.
See '?umx' for help, and file.show(system.file("NEWS", package="umx")) for NEWS.
Author: Timothy C Bates [aut, cre] (<https://orcid.org/0000-0002-1153-9007>)
Maintainer: Timothy C Bates <timothy.c.bates@gmail.com>
Diff between umx versions 2.6.5 dated 2018-04-30 and 2.8.0 dated 2018-06-19
umx-2.6.5/umx/R/umxGxE_biv.R |only umx-2.6.5/umx/man/umxGxE_biv.Rd |only umx-2.6.5/umx/man/umxPlotGxE_biv.Rd |only umx-2.6.5/umx/man/umxSummaryGxE_biv.Rd |only umx-2.8.0/umx/DESCRIPTION | 8 umx-2.8.0/umx/MD5 | 196 +-- umx-2.8.0/umx/NAMESPACE | 18 umx-2.8.0/umx/NEWS | 20 umx-2.8.0/umx/R/build_run_modify.r | 897 ++++++++-------- umx-2.8.0/umx/R/deprecated.r | 280 ++++ umx-2.8.0/umx/R/fit_and_reporting.r | 58 - umx-2.8.0/umx/R/misc_and_utility.r | 363 +++++- umx-2.8.0/umx/R/umxGxEbiv.R |only umx-2.8.0/umx/R/umxPlotCPnew.R |only umx-2.8.0/umx/R/umxSimplex.R | 68 - umx-2.8.0/umx/R/xmu.r | 125 +- umx-2.8.0/umx/R/xmu_make_top.R |only umx-2.8.0/umx/man/figures/IP.png |binary umx-2.8.0/umx/man/figures/umx_help_figures.graffle |binary umx-2.8.0/umx/man/install.OpenMx.Rd | 12 umx-2.8.0/umx/man/plot.MxModel.Rd | 7 umx-2.8.0/umx/man/qm.Rd | 12 umx-2.8.0/umx/man/umx.Rd | 29 umx-2.8.0/umx/man/umxACE.Rd | 86 - umx-2.8.0/umx/man/umxACE_cov_fixed.Rd | 7 umx-2.8.0/umx/man/umxACEcov.Rd | 7 umx-2.8.0/umx/man/umxACEv.Rd | 7 umx-2.8.0/umx/man/umxAlgebra.Rd | 6 umx-2.8.0/umx/man/umxBrownie.Rd | 12 umx-2.8.0/umx/man/umxCP.Rd | 121 +- umx-2.8.0/umx/man/umxCPold.Rd |only umx-2.8.0/umx/man/umxConfint.Rd | 2 umx-2.8.0/umx/man/umxFactor.Rd | 12 umx-2.8.0/umx/man/umxGxE.Rd | 7 umx-2.8.0/umx/man/umxGxE_window.Rd | 7 umx-2.8.0/umx/man/umxGxEbiv.Rd |only umx-2.8.0/umx/man/umxIP.Rd | 10 umx-2.8.0/umx/man/umxIPnew.Rd |only umx-2.8.0/umx/man/umxModel.Rd | 1 umx-2.8.0/umx/man/umxPlotACE.Rd | 7 umx-2.8.0/umx/man/umxPlotACEcov.Rd | 7 umx-2.8.0/umx/man/umxPlotACEv.Rd | 7 umx-2.8.0/umx/man/umxPlotCP.Rd | 7 umx-2.8.0/umx/man/umxPlotCPnew.Rd |only umx-2.8.0/umx/man/umxPlotGxE.Rd | 7 umx-2.8.0/umx/man/umxPlotGxEbiv.Rd |only umx-2.8.0/umx/man/umxPlotIP.Rd | 7 umx-2.8.0/umx/man/umxPlotSimplex.Rd | 7 umx-2.8.0/umx/man/umxRAM.Rd | 32 umx-2.8.0/umx/man/umxSexLim.Rd | 9 umx-2.8.0/umx/man/umxSimplex.Rd | 91 - umx-2.8.0/umx/man/umxSummaryACE.Rd | 9 umx-2.8.0/umx/man/umxSummaryACEcov.Rd | 9 umx-2.8.0/umx/man/umxSummaryACEv.Rd | 9 umx-2.8.0/umx/man/umxSummaryCP.Rd | 30 umx-2.8.0/umx/man/umxSummaryGxE.Rd | 9 umx-2.8.0/umx/man/umxSummaryGxEbiv.Rd |only umx-2.8.0/umx/man/umxSummaryIP.Rd | 9 umx-2.8.0/umx/man/umxSummarySexLim.Rd | 9 umx-2.8.0/umx/man/umxSummarySimplex.Rd | 9 umx-2.8.0/umx/man/umxThresholdMatrix.Rd | 131 +- umx-2.8.0/umx/man/umxVersion.Rd | 20 umx-2.8.0/umx/man/umx_array_shift.Rd | 12 umx-2.8.0/umx/man/umx_cell_is_on.Rd |only umx-2.8.0/umx/man/umx_cont_2_quantiles.Rd | 12 umx-2.8.0/umx/man/umx_default_option.Rd | 1 umx-2.8.0/umx/man/umx_find_object.Rd | 4 umx-2.8.0/umx/man/umx_get_checkpoint.Rd | 1 umx-2.8.0/umx/man/umx_get_options.Rd | 1 umx-2.8.0/umx/man/umx_graphviz_rank.Rd |only umx-2.8.0/umx/man/umx_is_class.Rd | 3 umx-2.8.0/umx/man/umx_make.Rd | 5 umx-2.8.0/umx/man/umx_make_TwinData.Rd | 25 umx-2.8.0/umx/man/umx_mat2dot.Rd |only umx-2.8.0/umx/man/umx_msg.Rd | 5 umx-2.8.0/umx/man/umx_open_CRAN_page.Rd | 11 umx-2.8.0/umx/man/umx_pad.Rd | 7 umx-2.8.0/umx/man/umx_pb_note.Rd | 11 umx-2.8.0/umx/man/umx_print.Rd | 11 umx-2.8.0/umx/man/umx_scale.Rd | 11 umx-2.8.0/umx/man/umx_set_auto_plot.Rd | 1 umx-2.8.0/umx/man/umx_set_auto_run.Rd | 1 umx-2.8.0/umx/man/umx_set_checkpoint.Rd | 1 umx-2.8.0/umx/man/umx_set_condensed_slots.Rd | 1 umx-2.8.0/umx/man/umx_set_cores.Rd | 1 umx-2.8.0/umx/man/umx_set_optimization_options.Rd |only umx-2.8.0/umx/man/umx_set_optimizer.Rd | 1 umx-2.8.0/umx/man/umx_set_plot_file_suffix.Rd | 1 umx-2.8.0/umx/man/umx_set_plot_format.Rd | 1 umx-2.8.0/umx/man/umx_set_table_format.Rd | 1 umx-2.8.0/umx/man/xmuHasSquareBrackets.Rd | 1 umx-2.8.0/umx/man/xmuLabel_MATRIX_Model.Rd | 5 umx-2.8.0/umx/man/xmuLabel_Matrix.Rd | 1 umx-2.8.0/umx/man/xmuLabel_RAM_Model.Rd | 1 umx-2.8.0/umx/man/xmuMI.Rd | 1 umx-2.8.0/umx/man/xmuMakeDeviationThresholdsMatrices.Rd | 1 umx-2.8.0/umx/man/xmuMakeOneHeadedPathsFromPathList.Rd | 1 umx-2.8.0/umx/man/xmuMakeTwoHeadedPathsFromPathList.Rd | 1 umx-2.8.0/umx/man/xmuMaxLevels.Rd | 1 umx-2.8.0/umx/man/xmuMinLevels.Rd | 1 umx-2.8.0/umx/man/xmuPropagateLabels.Rd | 1 umx-2.8.0/umx/man/xmu_check_levels_identical.Rd | 1 umx-2.8.0/umx/man/xmu_dot_make_paths.Rd | 1 umx-2.8.0/umx/man/xmu_dot_make_residuals.Rd | 1 umx-2.8.0/umx/man/xmu_make_top.Rd |only umx-2.8.0/umx/man/xmu_simplex_corner.Rd | 1 umx-2.8.0/umx/man/xmu_start_value_list.Rd | 1 umx-2.8.0/umx/man/xmu_twin_check.Rd | 58 - 108 files changed, 2006 insertions(+), 1004 deletions(-)
Title: A Statistically Sound 'data.frame' Processor/Conditioner
Description: A 'data.frame' processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner.
'vtreat' prepares variables so that data has fewer exceptional cases, making
it easier to safely use models in production. Common problems 'vtreat' defends
against: 'Inf', 'NA', too many categorical levels, rare categorical levels, and new
categorical levels (levels seen during application, but not during training). Reference:
"'vtreat': a data.frame Processor for Predictive Modeling", 'Zumel', 'Mount', 2016, DOI:10.5281/zenodo.1173314.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between vtreat versions 1.0.4 dated 2018-05-06 and 1.2.0 dated 2018-06-19
vtreat-1.0.4/vtreat/man/catScore.Rd |only vtreat-1.0.4/vtreat/man/linScore.Rd |only vtreat-1.0.4/vtreat/tests/testthat/testdplyr.R |only vtreat-1.2.0/vtreat/DESCRIPTION | 16 - vtreat-1.2.0/vtreat/MD5 | 80 ++++---- vtreat-1.2.0/vtreat/NAMESPACE | 33 +++ vtreat-1.2.0/vtreat/NEWS.md | 14 + vtreat-1.2.0/vtreat/R/cleanTreatment.R | 23 ++ vtreat-1.2.0/vtreat/R/customCoder.R | 4 vtreat-1.2.0/vtreat/R/deviationFact.R | 25 ++ vtreat-1.2.0/vtreat/R/effectTreatmentC.R | 23 ++ vtreat-1.2.0/vtreat/R/effectTreatmentN.R | 24 ++ vtreat-1.2.0/vtreat/R/indicatorTreatment.R | 40 ++++ vtreat-1.2.0/vtreat/R/isBadTreatment.R | 22 ++ vtreat-1.2.0/vtreat/R/outOfSample.R | 7 vtreat-1.2.0/vtreat/R/prevalenceFact.R | 26 ++ vtreat-1.2.0/vtreat/R/rquery_treatment.R |only vtreat-1.2.0/vtreat/R/utils.R | 22 +- vtreat-1.2.0/vtreat/R/vtreat.R | 65 +++++- vtreat-1.2.0/vtreat/R/vtreatImpl.R | 16 - vtreat-1.2.0/vtreat/R/wrapr_exports.R |only vtreat-1.2.0/vtreat/R/zzz.R | 7 vtreat-1.2.0/vtreat/README.md | 52 +++-- vtreat-1.2.0/vtreat/build/vignette.rds |binary vtreat-1.2.0/vtreat/inst/doc/SavingTreamentPlans.R | 6 vtreat-1.2.0/vtreat/inst/doc/SavingTreamentPlans.Rmd | 6 vtreat-1.2.0/vtreat/inst/doc/SavingTreamentPlans.html | 19 -- vtreat-1.2.0/vtreat/inst/doc/vtreat.html | 171 ++++-------------- vtreat-1.2.0/vtreat/inst/doc/vtreatCrossFrames.html | 58 +++--- vtreat-1.2.0/vtreat/inst/doc/vtreatGrouping.R | 20 +- vtreat-1.2.0/vtreat/inst/doc/vtreatGrouping.Rmd | 20 +- vtreat-1.2.0/vtreat/inst/doc/vtreatGrouping.html | 4 vtreat-1.2.0/vtreat/inst/doc/vtreatOverfit.html | 42 ++-- vtreat-1.2.0/vtreat/inst/doc/vtreatRareLevels.html | 28 +- vtreat-1.2.0/vtreat/inst/doc/vtreatScaleMode.html | 30 +-- vtreat-1.2.0/vtreat/inst/doc/vtreatSignificance.html | 22 +- vtreat-1.2.0/vtreat/inst/doc/vtreatSplitting.html | 4 vtreat-1.2.0/vtreat/inst/doc/vtreatVariableTypes.html | 80 ++++---- vtreat-1.2.0/vtreat/man/as_rquery_plan.Rd |only vtreat-1.2.0/vtreat/man/flatten_fn_list.Rd |only vtreat-1.2.0/vtreat/man/materialize_treated.Rd |only vtreat-1.2.0/vtreat/man/print.treatmentplan.Rd |only vtreat-1.2.0/vtreat/man/reexports.Rd |only vtreat-1.2.0/vtreat/tests/testthat/testStability.R | 2 vtreat-1.2.0/vtreat/vignettes/SavingTreamentPlans.Rmd | 6 vtreat-1.2.0/vtreat/vignettes/vtreatGrouping.Rmd | 20 +- 46 files changed, 597 insertions(+), 440 deletions(-)
Title: Measurement and Partitioning of Similarity-Sensitive
Biodiversity
Description: Provides a framework for the measurement and partitioning of
the (similarity-sensitive) biodiversity of a metacommunity and its
constituent subcommunities. Richard Reeve, et al. (2016)
<arXiv:1404.6520v3>.
Author: Sonia Mitchell [aut, cre] (<https://orcid.org/0000-0003-1536-2066>),
Richard Reeve [aut] (<https://orcid.org/0000-0003-2589-8091>)
Maintainer: Sonia Mitchell <s.mitchell.2@research.gla.ac.uk>
Diff between rdiversity versions 1.2 dated 2018-06-12 and 1.2.1 dated 2018-06-19
DESCRIPTION | 16 ++++++++-------- MD5 | 18 +++++++++--------- NEWS.md | 11 ++++++++++- R/chainsaw.R | 9 ++++----- R/check_phypartition.R | 22 +++++++++++++--------- R/metacommunity.R | 1 - R/phy_abundance.R | 1 - inst/CITATION | 8 ++++---- man/chainsaw.Rd | 7 +++---- man/phy_abundance.Rd | 1 - 10 files changed, 51 insertions(+), 43 deletions(-)
Title: Mixed-Frequency GARCH Models
Description: Estimating GARCH-MIDAS (MIxed-DAta-Sampling) models (Engle, Ghysels, Sohn, 2013, <doi:10.1162/REST_a_00300>) and related statistical inference, accompanying the paper "Two are better than one: volatility forecasting using multiplicative component GARCH models" by Conrad and Kleen (2018, Working Paper, <doi:10.2139/ssrn.2752354>). The GARCH-MIDAS model decomposes the conditional variance of (daily) stock returns into a short- and long-term component, where the latter may depend on an exogenous covariate sampled at a lower frequency.
Author: Onno Kleen [aut, cre]
Maintainer: Onno Kleen <r@onnokleen.de>
Diff between mfGARCH versions 0.1.3 dated 2018-05-24 and 0.1.4 dated 2018-06-19
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 10 ++++++++++ R/fit_mfgarch.R | 23 +++++++++++++++++++---- R/generic_functions.R | 2 +- R/simulate_mfgarch_diffusion.R | 7 +++---- man/fit_mfgarch.Rd | 4 ++-- man/simulate_mfgarch_diffusion.Rd | 4 +++- 8 files changed, 48 insertions(+), 22 deletions(-)
Title: Optimal Designs for Copula Models
Description: A direct approach to optimal designs for copula models based on
the Fisher information. Provides flexible functions for building joint PDFs,
evaluating the Fisher information and finding optimal designs. It includes an
extensible solution to summation and integration called 'nint', functions for
transforming, plotting and comparing designs, as well as a set of tools for
common low-level tasks.
Author: Andreas Rappold [aut, cre]
Maintainer: Andreas Rappold <arappold@gmx.at>
Diff between docopulae versions 0.3.3 dated 2016-06-23 and 0.3.4 dated 2018-06-19
DESCRIPTION | 12 ++-- MD5 | 79 +++++++++++++++---------------- NAMESPACE | 2 R/base.R | 2 R/examples/buildf.R | 14 ++--- R/examples/main.R | 4 - R/main.R | 113 +++++++++++++++++++++++++++++++++------------ man/Defficiency.Rd | 1 man/DerivLogf.Rd | 4 - man/Dsensitivity.Rd | 1 man/Wynn.Rd | 1 man/buildf.Rd | 34 +++++++------ man/design.Rd | 1 man/docopulae.Rd | 1 man/fisherI.Rd | 1 man/getM.Rd | 1 man/integrateA.Rd | 1 man/nint_ERROR.Rd | 3 - man/nint_TYPE.Rd | 5 - man/nint_expandSpace.Rd | 1 man/nint_funcDim.Rd | 1 man/nint_gridDim.Rd | 1 man/nint_integrate.Rd | 1 man/nint_integrateNCube.Rd | 5 - man/nint_integrateNFunc.Rd | 1 man/nint_intvDim.Rd | 1 man/nint_scatDim.Rd | 1 man/nint_space.Rd | 1 man/nint_tanTransform.Rd | 1 man/nint_transform.Rd | 1 man/nint_validateSpace.Rd | 1 man/numDerivLogf.Rd | 4 - man/param.Rd | 5 - man/plot.desigh.Rd | 1 man/print.nint_space.Rd | 1 man/reduce.Rd | 1 man/rowmatch.Rd | 1 man/roworder.Rd | 1 man/seq1.Rd | 1 man/update.param.Rd | 1 src/docopulae_init.c |only 41 files changed, 172 insertions(+), 140 deletions(-)
Title: Deming, Thiel-Sen and Passing-Bablock Regression
Description: Generalized Deming regression, Theil-Sen regression and Passing-Bablock regression functions.
Author: Terry Therneau
Maintainer: Terry Therneau <therneau.terry@mayo.edu>
Diff between deming versions 1.0-1 dated 2014-09-23 and 1.2 dated 2018-06-19
deming-1.0-1/deming/configure |only deming-1.0-1/deming/noweb/deming.R |only deming-1.0-1/deming/noweb/deming.aux |only deming-1.0-1/deming/noweb/deming.log |only deming-1.0-1/deming/noweb/deming.out |only deming-1.0-1/deming/noweb/deming.tex |only deming-1.0-1/deming/noweb/noweb.sty |only deming-1.2/deming/DESCRIPTION | 8 - deming-1.2/deming/MD5 | 43 ++--- deming-1.2/deming/NAMESPACE | 3 deming-1.2/deming/R/deming.R | 31 ++-- deming-1.2/deming/R/pbreg.R | 13 - deming-1.2/deming/R/thielsen.R | 8 - deming-1.2/deming/build/vignette.rds |binary deming-1.2/deming/cleanup | 2 deming-1.2/deming/inst/NEWS.Rd |only deming-1.2/deming/inst/doc/deming.R | 28 --- deming-1.2/deming/inst/doc/deming.Rnw | 227 ++++++++++++++----------------- deming-1.2/deming/inst/doc/deming.pdf |binary deming-1.2/deming/man/deming.Rd | 19 ++ deming-1.2/deming/noweb/Makefile | 2 deming-1.2/deming/noweb/Readme |only deming-1.2/deming/noweb/deming.pdf |binary deming-1.2/deming/noweb/demingsource.Rnw | 31 ++-- deming-1.2/deming/tests/pbtest.R | 4 deming-1.2/deming/tests/pbtest.Rout.save | 13 + deming-1.2/deming/vignettes/deming.Rnw | 227 ++++++++++++++----------------- 27 files changed, 317 insertions(+), 342 deletions(-)
Title: Production Function Estimation
Description: Implements the methods proposed by Olley, G.S. and Pakes, A. (1996) <doi:10.2307/2171831>, Levinsohn, J. and Petrin, A. (2003) <doi:10.1111/1467-937X.00246>, Ackerberg, D.A. and Caves, K. and Frazer, G. (2015) <doi:10.3982/ECTA13408> and Wooldridge, J.M. (2009) <doi:10.1016/j.econlet.2009.04.026> for structural productivity estimation .
Author: Gabriele Rovigatti [aut,cre]
Maintainer: Gabriele Rovigatti <gabriele.rovigatti@gmail.com>
Diff between prodest versions 0.1.1 dated 2017-07-08 and 1.0.1 dated 2018-06-19
prodest-0.1.1/prodest/inst/doc/prodest_vignette_0.1.1.pdf |only prodest-0.1.1/prodest/man/finalWRDG.Rd |only prodest-0.1.1/prodest/man/gWRDG.Rd |only prodest-1.0.1/prodest/DESCRIPTION | 10 prodest-1.0.1/prodest/MD5 | 63 - prodest-1.0.1/prodest/NAMESPACE | 35 - prodest-1.0.1/prodest/NEWS |only prodest-1.0.1/prodest/R/ClassMethods.R | 172 ++-- prodest-1.0.1/prodest/R/auxFun.R | 314 +++++---- prodest-1.0.1/prodest/R/panelSim.R | 195 ++--- prodest-1.0.1/prodest/R/prodestACF.R | 303 ++++---- prodest-1.0.1/prodest/R/prodestOPLP.R | 486 +++++++------- prodest-1.0.1/prodest/R/prodestROB.R |only prodest-1.0.1/prodest/R/prodestWRDG.R | 203 +---- prodest-1.0.1/prodest/R/prodestWRDG_GMM.R | 131 +-- prodest-1.0.1/prodest/README.md | 2 prodest-1.0.1/prodest/inst/CITATION | 4 prodest-1.0.1/prodest/inst/THANKS |only prodest-1.0.1/prodest/inst/doc/prodest_vignette_1.0.1.pdf |only prodest-1.0.1/prodest/man/checkM.Rd | 52 - prodest-1.0.1/prodest/man/checkMD.Rd |only prodest-1.0.1/prodest/man/finalACF.Rd | 108 +-- prodest-1.0.1/prodest/man/finalOPLP.Rd | 120 +-- prodest-1.0.1/prodest/man/gOPLP.Rd | 108 +-- prodest-1.0.1/prodest/man/method-show.Rd | 56 - prodest-1.0.1/prodest/man/method-summary.Rd | 62 - prodest-1.0.1/prodest/man/panelSim.Rd | 223 +++--- prodest-1.0.1/prodest/man/printProd.Rd | 121 +-- prodest-1.0.1/prodest/man/prod-class.Rd | 126 +-- prodest-1.0.1/prodest/man/prodestACF.Rd | 331 ++++----- prodest-1.0.1/prodest/man/prodestLP.Rd | 337 ++++----- prodest-1.0.1/prodest/man/prodestOP.Rd | 320 ++++----- prodest-1.0.1/prodest/man/prodestROB.Rd |only prodest-1.0.1/prodest/man/prodestWRDG.Rd | 294 +++----- prodest-1.0.1/prodest/man/prodestWRDG_GMM.Rd | 280 +++----- prodest-1.0.1/prodest/man/weightM.Rd | 108 +-- prodest-1.0.1/prodest/man/withinvar.Rd | 52 - 37 files changed, 2320 insertions(+), 2296 deletions(-)
More information about ROI.plugin.neos at CRAN
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Title: Super Imposition by Translation and Rotation Growth Curve
Analysis
Description: Functions for fitting and plotting SITAR (Super Imposition by
Translation And Rotation) growth curve models. SITAR is a shape-invariant model
with a regression B-spline mean curve and subject-specific random effects on
both the measurement and age scales.
The model was first described by Lindstrom (1995) <doi:10.1002/sim.4780141807>
and developed as the SITAR method by Cole et al (2010) <doi:10.1093/ije/dyq115>.
Author: Tim Cole
Maintainer: Tim Cole <tim.cole@ucl.ac.uk>
Diff between sitar versions 1.0.10 dated 2017-09-15 and 1.1.0 dated 2018-06-19
sitar-1.0.10/sitar/man/y2plot.Rd |only sitar-1.1.0/sitar/DESCRIPTION | 15 sitar-1.1.0/sitar/MD5 | 47 +- sitar-1.1.0/sitar/NAMESPACE | 14 sitar-1.1.0/sitar/NEWS | 24 + sitar-1.1.0/sitar/R/LMS2z.R | 127 +++--- sitar-1.1.0/sitar/R/berkeley.R |only sitar-1.1.0/sitar/R/dfpower.R | 142 ++++--- sitar-1.1.0/sitar/R/ifun.R | 10 sitar-1.1.0/sitar/R/mplot.R | 53 +- sitar-1.1.0/sitar/R/pdLMS.R |only sitar-1.1.0/sitar/R/plot.sitar.R | 631 +++++++++++++++++++++------------ sitar-1.1.0/sitar/R/predict.sitar.R | 27 - sitar-1.1.0/sitar/R/sitarlib.R | 148 ------- sitar-1.1.0/sitar/build |only sitar-1.1.0/sitar/data/berkeley.rda |only sitar-1.1.0/sitar/inst |only sitar-1.1.0/sitar/man/LMS2z.Rd | 38 - sitar-1.1.0/sitar/man/berkeley.Rd |only sitar-1.1.0/sitar/man/cLMS.Rd | 30 - sitar-1.1.0/sitar/man/dfpower.Rd | 21 - sitar-1.1.0/sitar/man/ifun.Rd | 10 sitar-1.1.0/sitar/man/mplot.Rd | 3 sitar-1.1.0/sitar/man/pdLMS.Rd |only sitar-1.1.0/sitar/man/plot.sitar.Rd | 110 ++++- sitar-1.1.0/sitar/man/predict.sitar.Rd | 4 sitar-1.1.0/sitar/man/z2cent.Rd | 11 sitar-1.1.0/sitar/vignettes |only 28 files changed, 846 insertions(+), 619 deletions(-)
Title: Precision-Recall and ROC Curves for Weighted and Unweighted Data
Description: Computes the areas under the precision-recall (PR) and ROC curve for weighted (e.g., soft-labeled) and unweighted data. In contrast to other implementations, the interpolation between points of the PR curve is done by a non-linear piecewise function. In addition to the areas under the curves, the curves themselves can also be computed and plotted by a specific S3-method. References: Davis and Goadrich (2006) <doi:10.1145/1143844.1143874>; Keilwagen et al. (2014) <doi:10.1371/journal.pone.0092209>; Grau et al. (2015) <doi:10.1093/bioinformatics/btv153>.
Author: Jan Grau and Jens Keilwagen
Maintainer: Jan Grau <grau@informatik.uni-halle.de>
Diff between PRROC versions 1.3 dated 2017-04-21 and 1.3.1 dated 2018-06-19
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- inst/doc/PRROC.pdf |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation (ODE) models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
VODE and LSODA are in the public domain. The information is available
in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut],
Melissa Hallow [aut],
Wenping Wang [aut, cre],
Zufar Mulyukov [ctb],
Justin Wilkins [ctb],
Simon Frost [ctb],
Heng Li [ctb],
Yu Feng [ctb],
Alan Hindmarsh [ctb],
Linda Petzold [ctb],
Ernst Hairer [ctb],
Gerhard Wanner [ctb],
J Colinge [ctb],
Hadley Wickham [ctb],
G Grothendieck [ctb],
Robert Gentleman [ctb],
Ross Ihaka [ctb],
R core team [cph],
odepack authors [cph]
Maintainer: Wenping Wang <wwang8198@gmail.com>
Diff between RxODE versions 0.7.2-4 dated 2018-06-16 and 0.7.2-5 dated 2018-06-19
RxODE-0.7.2-4/RxODE/man/rxSympyExec.Rd |only RxODE-0.7.2-4/RxODE/man/rxSympyStart.Rd |only RxODE-0.7.2-5/RxODE/DESCRIPTION | 6 RxODE-0.7.2-5/RxODE/MD5 | 278 RxODE-0.7.2-5/RxODE/NAMESPACE | 356 RxODE-0.7.2-5/RxODE/R/RxODE.R | 20 RxODE-0.7.2-5/RxODE/R/rxsolve.R | 28 RxODE-0.7.2-5/RxODE/build/vignette.rds |binary RxODE-0.7.2-5/RxODE/inst/doc/RxODE-covariates.html | 1134 - RxODE-0.7.2-5/RxODE/inst/doc/RxODE-data-frame.html | 2743 +- RxODE-0.7.2-5/RxODE/inst/doc/RxODE-events.Rmd | 2 RxODE-0.7.2-5/RxODE/inst/doc/RxODE-events.html | 211 RxODE-0.7.2-5/RxODE/inst/doc/RxODE-intro.html | 1285 - RxODE-0.7.2-5/RxODE/inst/doc/RxODE-mix-lin-ode.html | 1476 - RxODE-0.7.2-5/RxODE/inst/doc/RxODE-shiny.html | 205 RxODE-0.7.2-5/RxODE/inst/doc/RxODE-sim-var.html |10404 +++++++---- RxODE-0.7.2-5/RxODE/inst/doc/RxODE-stiff.html | 739 RxODE-0.7.2-5/RxODE/inst/doc/RxODE-syntax.html | 324 RxODE-0.7.2-5/RxODE/inst/doc/RxODE-transit-compartments.html | 355 RxODE-0.7.2-5/RxODE/man/RxODE.Rd | 640 RxODE-0.7.2-5/RxODE/man/add.dosing.Rd | 106 RxODE-0.7.2-5/RxODE/man/add.sampling.Rd | 66 RxODE-0.7.2-5/RxODE/man/coef.RxODE.Rd | 76 RxODE-0.7.2-5/RxODE/man/cvPost.Rd | 66 RxODE-0.7.2-5/RxODE/man/eventTable.Rd | 338 RxODE-0.7.2-5/RxODE/man/findLhs.Rd | 42 RxODE-0.7.2-5/RxODE/man/genShinyApp.template.Rd | 160 RxODE-0.7.2-5/RxODE/man/is.rxSolve.Rd | 40 RxODE-0.7.2-5/RxODE/man/plus-.rxSolve.Rd | 46 RxODE-0.7.2-5/RxODE/man/print.RxODE.Rd | 38 RxODE-0.7.2-5/RxODE/man/print.rxCoef.Rd | 36 RxODE-0.7.2-5/RxODE/man/print.rxCoefSolve.Rd | 40 RxODE-0.7.2-5/RxODE/man/print.rxDll.Rd | 30 RxODE-0.7.2-5/RxODE/man/reexports.Rd | 32 RxODE-0.7.2-5/RxODE/man/rinvchisq.Rd | 44 RxODE-0.7.2-5/RxODE/man/rxAddReturn.Rd | 44 RxODE-0.7.2-5/RxODE/man/rxAssignPtr.Rd | 28 RxODE-0.7.2-5/RxODE/man/rxBlockZeros.Rd | 42 RxODE-0.7.2-5/RxODE/man/rxC.Rd | 46 RxODE-0.7.2-5/RxODE/man/rxCat.Rd | 36 RxODE-0.7.2-5/RxODE/man/rxChain.Rd | 52 RxODE-0.7.2-5/RxODE/man/rxChain2.Rd | 52 RxODE-0.7.2-5/RxODE/man/rxClean.Rd | 46 RxODE-0.7.2-5/RxODE/man/rxCompile.Rd | 198 RxODE-0.7.2-5/RxODE/man/rxCondition.Rd | 54 RxODE-0.7.2-5/RxODE/man/rxCores.Rd | 22 RxODE-0.7.2-5/RxODE/man/rxDelete.Rd | 42 RxODE-0.7.2-5/RxODE/man/rxDfdy.Rd | 42 RxODE-0.7.2-5/RxODE/man/rxDll.Rd | 48 RxODE-0.7.2-5/RxODE/man/rxDynLoad.Rd | 48 RxODE-0.7.2-5/RxODE/man/rxDynUnload.Rd | 48 RxODE-0.7.2-5/RxODE/man/rxExpandIfElse.Rd | 68 RxODE-0.7.2-5/RxODE/man/rxForget.Rd | 30 RxODE-0.7.2-5/RxODE/man/rxGetModel.Rd | 62 RxODE-0.7.2-5/RxODE/man/rxGetRxODE.Rd | 28 RxODE-0.7.2-5/RxODE/man/rxHtml.Rd | 44 RxODE-0.7.2-5/RxODE/man/rxInits.Rd | 68 RxODE-0.7.2-5/RxODE/man/rxInv.Rd | 34 RxODE-0.7.2-5/RxODE/man/rxIs.Rd | 54 RxODE-0.7.2-5/RxODE/man/rxIsCurrent.Rd | 34 RxODE-0.7.2-5/RxODE/man/rxIsLoaded.Rd | 48 RxODE-0.7.2-5/RxODE/man/rxLhs.Rd | 46 RxODE-0.7.2-5/RxODE/man/rxLinCmtTrans.Rd | 42 RxODE-0.7.2-5/RxODE/man/rxLogifyModel.Rd | 46 RxODE-0.7.2-5/RxODE/man/rxMd5.Rd | 116 RxODE-0.7.2-5/RxODE/man/rxModelVars.Rd | 74 RxODE-0.7.2-5/RxODE/man/rxModels_.Rd | 30 RxODE-0.7.2-5/RxODE/man/rxNorm.Rd | 64 RxODE-0.7.2-5/RxODE/man/rxOptions.Rd | 84 RxODE-0.7.2-5/RxODE/man/rxParams.Rd | 58 RxODE-0.7.2-5/RxODE/man/rxParseErr.Rd | 60 RxODE-0.7.2-5/RxODE/man/rxParsePk.Rd | 46 RxODE-0.7.2-5/RxODE/man/rxParsePred.Rd | 46 RxODE-0.7.2-5/RxODE/man/rxPermissive.Rd | 76 RxODE-0.7.2-5/RxODE/man/rxPhysicalDrives.Rd | 48 RxODE-0.7.2-5/RxODE/man/rxPrint.Rd | 52 RxODE-0.7.2-5/RxODE/man/rxReload.Rd | 30 RxODE-0.7.2-5/RxODE/man/rxReq.Rd | 42 RxODE-0.7.2-5/RxODE/man/rxSetProd.Rd | 54 RxODE-0.7.2-5/RxODE/man/rxSetSum.Rd | 64 RxODE-0.7.2-5/RxODE/man/rxSetupIni.Rd | 40 RxODE-0.7.2-5/RxODE/man/rxSetupScale.Rd | 44 RxODE-0.7.2-5/RxODE/man/rxShiny.Rd | 92 RxODE-0.7.2-5/RxODE/man/rxSimThetaOmega.Rd | 154 RxODE-0.7.2-5/RxODE/man/rxSolve.Rd | 682 RxODE-0.7.2-5/RxODE/man/rxSolveFree.Rd | 24 RxODE-0.7.2-5/RxODE/man/rxSplitLines.Rd | 84 RxODE-0.7.2-5/RxODE/man/rxSplitPlusQ.Rd | 68 RxODE-0.7.2-5/RxODE/man/rxState.Rd | 56 RxODE-0.7.2-5/RxODE/man/rxSumProdModel.Rd | 60 RxODE-0.7.2-5/RxODE/man/rxSyPyAddVars.Rd | 42 RxODE-0.7.2-5/RxODE/man/rxSymDiag.Rd | 40 RxODE-0.7.2-5/RxODE/man/rxSymInv.Rd | 66 RxODE-0.7.2-5/RxODE/man/rxSymInvChol.Rd | 96 RxODE-0.7.2-5/RxODE/man/rxSymInvCholCreate.Rd | 56 RxODE-0.7.2-5/RxODE/man/rxSymInvCholN.Rd | 24 RxODE-0.7.2-5/RxODE/man/rxSymInvCreate.Rd | 50 RxODE-0.7.2-5/RxODE/man/rxSymPy.Rd | 42 RxODE-0.7.2-5/RxODE/man/rxSymPyClean.Rd | 30 RxODE-0.7.2-5/RxODE/man/rxSymPyClear.Rd | 36 RxODE-0.7.2-5/RxODE/man/rxSymPyDfDy.Rd | 68 RxODE-0.7.2-5/RxODE/man/rxSymPyExec.Rd |only RxODE-0.7.2-5/RxODE/man/rxSymPyExists.Rd | 42 RxODE-0.7.2-5/RxODE/man/rxSymPyExpand.Rd | 46 RxODE-0.7.2-5/RxODE/man/rxSymPyFix.Rd | 40 RxODE-0.7.2-5/RxODE/man/rxSymPyFunctions.Rd | 36 RxODE-0.7.2-5/RxODE/man/rxSymPyReserved.Rd | 36 RxODE-0.7.2-5/RxODE/man/rxSymPySensitivity.Rd | 68 RxODE-0.7.2-5/RxODE/man/rxSymPySetup.Rd | 48 RxODE-0.7.2-5/RxODE/man/rxSymPySetupIf.Rd | 42 RxODE-0.7.2-5/RxODE/man/rxSymPySetupPred.Rd | 116 RxODE-0.7.2-5/RxODE/man/rxSymPyStart.Rd |only RxODE-0.7.2-5/RxODE/man/rxSymPyVars.Rd | 36 RxODE-0.7.2-5/RxODE/man/rxSymPyVersion.Rd | 42 RxODE-0.7.2-5/RxODE/man/rxSyncOptions.Rd | 30 RxODE-0.7.2-5/RxODE/man/rxThetaEta.Rd | 46 RxODE-0.7.2-5/RxODE/man/rxToSymPy.Rd | 52 RxODE-0.7.2-5/RxODE/man/rxTrans.Rd | 172 RxODE-0.7.2-5/RxODE/man/rxValidate.Rd | 44 RxODE-0.7.2-5/RxODE/man/rxVersion.Rd | 52 RxODE-0.7.2-5/RxODE/man/rxWinPythonSetup.Rd | 28 RxODE-0.7.2-5/RxODE/man/rxWinSetup.Rd | 38 RxODE-0.7.2-5/RxODE/man/summary.RxODE.Rd | 38 RxODE-0.7.2-5/RxODE/man/summary.rxDll.Rd | 44 RxODE-0.7.2-5/RxODE/src/blas.h | 18 RxODE-0.7.2-5/RxODE/src/correction.c | 4 RxODE-0.7.2-5/RxODE/src/daxpy.c | 2 RxODE-0.7.2-5/RxODE/src/ddot.c | 2 RxODE-0.7.2-5/RxODE/src/dgefa.c | 8 RxODE-0.7.2-5/RxODE/src/dgesl.c | 10 RxODE-0.7.2-5/RxODE/src/dscal.c | 2 RxODE-0.7.2-5/RxODE/src/fnorm.c | 2 RxODE-0.7.2-5/RxODE/src/idamax.c | 2 RxODE-0.7.2-5/RxODE/src/lsoda.c | 4 RxODE-0.7.2-5/RxODE/src/methodswitch.c | 4 RxODE-0.7.2-5/RxODE/src/orderswitch.c | 2 RxODE-0.7.2-5/RxODE/src/prja.c | 6 RxODE-0.7.2-5/RxODE/src/rxData.cpp | 126 RxODE-0.7.2-5/RxODE/src/solsy.c | 2 RxODE-0.7.2-5/RxODE/src/stoda.c | 6 RxODE-0.7.2-5/RxODE/src/vmnorm.c | 2 RxODE-0.7.2-5/RxODE/vignettes/RxODE-events.Rmd | 2 142 files changed, 15942 insertions(+), 10974 deletions(-)
Title: GroundWater Spatiotemporal Data Analysis Tool (GWSDAT)
Description: Shiny application for the analysis of groundwater monitoring data, designed to work with simple time-series data for solute concentration and ground water elevation, but can also plot non-aqueous phase liquid (NAPL) thickness if required. Also provides the import of a site basemap in GIS shapefile format.
Author: Wayne W Jones <wayne.w.jones@shell.com>, Andrej Aderhold <andrej.aderhold@protonmail.com>, Ludger Evers <ludger.evers@glasgow.ac.uk>
Maintainer: Andrej Aderhold <andrej.aderhold@protonmail.com>
Diff between GWSDAT versions 3.0.0 dated 2017-11-29 and 3.0.1 dated 2018-06-19
GWSDAT-3.0.0/GWSDAT/inst/application/app.R |only GWSDAT-3.0.0/GWSDAT/inst/extdata/GWSDAT_Examples.RData |only GWSDAT-3.0.1/GWSDAT/DESCRIPTION | 11 GWSDAT-3.0.1/GWSDAT/MD5 | 62 GWSDAT-3.0.1/GWSDAT/NAMESPACE | 73 - GWSDAT-3.0.1/GWSDAT/R/calcGWFlow.R | 28 GWSDAT-3.0.1/GWSDAT/R/calcTrafficLights.R | 196 +-- GWSDAT-3.0.1/GWSDAT/R/createOptions.R | 2 GWSDAT-3.0.1/GWSDAT/R/fitData.R | 89 - GWSDAT-3.0.1/GWSDAT/R/fitPSpline.R | 226 +-- GWSDAT-3.0.1/GWSDAT/R/global.R | 26 GWSDAT-3.0.1/GWSDAT/R/jobqueue.R |only GWSDAT-3.0.1/GWSDAT/R/launchApp.R | 14 GWSDAT-3.0.1/GWSDAT/R/plotPlumeTimeSeries.R | 16 GWSDAT-3.0.1/GWSDAT/R/plotSTPredictions.R | 15 GWSDAT-3.0.1/GWSDAT/R/plotSpatialImage.R | 98 + GWSDAT-3.0.1/GWSDAT/R/plotTimeSeries.R | 21 GWSDAT-3.0.1/GWSDAT/R/plotWellReport.R | 17 GWSDAT-3.0.1/GWSDAT/R/ppt.R | 46 GWSDAT-3.0.1/GWSDAT/R/readData.R | 6 GWSDAT-3.0.1/GWSDAT/R/server.R | 894 +++++++++++--- GWSDAT-3.0.1/GWSDAT/R/ui.R | 111 + GWSDAT-3.0.1/GWSDAT/R/uiAnalyse.R | 5 GWSDAT-3.0.1/GWSDAT/R/uiAnalyseOptions.R | 2 GWSDAT-3.0.1/GWSDAT/R/uiAttr.R | 4 GWSDAT-3.0.1/GWSDAT/R/uiDataManager.R | 15 GWSDAT-3.0.1/GWSDAT/R/uiLogsJobs.R |only GWSDAT-3.0.1/GWSDAT/R/uiSpatialImage.R | 5 GWSDAT-3.0.1/GWSDAT/R/user_db.R |only GWSDAT-3.0.1/GWSDAT/R/utilities.R | 35 GWSDAT-3.0.1/GWSDAT/inst/application/jqdb_pspline_fit.R |only GWSDAT-3.0.1/GWSDAT/inst/application/simple_pspline_fit.R |only GWSDAT-3.0.1/GWSDAT/inst/extdata/GWSDAT_Examples.rds |only GWSDAT-3.0.1/GWSDAT/inst/www/jump_to_tsplot.js | 3 GWSDAT-3.0.1/GWSDAT/man/createOptions.Rd | 54 GWSDAT-3.0.1/GWSDAT/man/launchApp.Rd | 58 36 files changed, 1392 insertions(+), 740 deletions(-)
Title: Miscellaneous Tools for Chinese Text Mining and More
Description: Efforts are made to make Chinese text mining easier, faster, and robust to errors.
Document term matrix can be generated by only one line of code; detecting encoding,
segmenting and removing stop words are done automatically.
Some convenient tools are also supplied.
Author: Jiang Wu [aut, cre] (from Capital Normal University)
Maintainer: Jiang Wu <textidea@sina.com>
Diff between chinese.misc versions 0.1.8 dated 2018-02-06 and 0.1.9 dated 2018-06-19
chinese.misc-0.1.8/chinese.misc/R/As.chArActEr_in.R |only chinese.misc-0.1.8/chinese.misc/R/inner_from_df.R |only chinese.misc-0.1.8/chinese.misc/R/list.as.character.R |only chinese.misc-0.1.9/chinese.misc/DESCRIPTION | 10 +- chinese.misc-0.1.9/chinese.misc/MD5 | 75 +++++++-------- chinese.misc-0.1.9/chinese.misc/NAMESPACE | 2 chinese.misc-0.1.9/chinese.misc/NEWS | 13 ++ chinese.misc-0.1.9/chinese.misc/R/AftEr_myfUn.R | 2 chinese.misc-0.1.9/chinese.misc/R/as.character2.R | 88 +++++------------- chinese.misc-0.1.9/chinese.misc/R/corp_or_dtm.R | 19 ++- chinese.misc-0.1.9/chinese.misc/R/csv2txt.R | 43 ++------ chinese.misc-0.1.9/chinese.misc/R/dictionary_dtm.R | 4 chinese.misc-0.1.9/chinese.misc/R/get_tag_word.R | 2 chinese.misc-0.1.9/chinese.misc/R/make_stoplist.R | 2 chinese.misc-0.1.9/chinese.misc/R/match_pattern.R | 6 - chinese.misc-0.1.9/chinese.misc/R/output_dtm.R | 4 chinese.misc-0.1.9/chinese.misc/R/scancn.R | 15 ++- chinese.misc-0.1.9/chinese.misc/R/second_dtm.R | 3 chinese.misc-0.1.9/chinese.misc/R/seg_file.R | 6 - chinese.misc-0.1.9/chinese.misc/R/slim_text.R | 4 chinese.misc-0.1.9/chinese.misc/R/sort_tf.R | 4 chinese.misc-0.1.9/chinese.misc/R/sparse_left.R |only chinese.misc-0.1.9/chinese.misc/R/topic_trend.R | 2 chinese.misc-0.1.9/chinese.misc/R/word_cor.R | 4 chinese.misc-0.1.9/chinese.misc/R/zero_paste.R | 2 chinese.misc-0.1.9/chinese.misc/R/zero_paste2.R | 2 chinese.misc-0.1.9/chinese.misc/man/as.character2.Rd | 3 chinese.misc-0.1.9/chinese.misc/man/corp_or_dtm.Rd | 17 +-- chinese.misc-0.1.9/chinese.misc/man/csv2txt.Rd | 22 +--- chinese.misc-0.1.9/chinese.misc/man/dictionary_dtm.Rd | 4 chinese.misc-0.1.9/chinese.misc/man/get_tag_word.Rd | 2 chinese.misc-0.1.9/chinese.misc/man/make_stoplist.Rd | 2 chinese.misc-0.1.9/chinese.misc/man/match_pattern.Rd | 5 - chinese.misc-0.1.9/chinese.misc/man/output_dtm.Rd | 4 chinese.misc-0.1.9/chinese.misc/man/scancn.Rd | 14 ++ chinese.misc-0.1.9/chinese.misc/man/seg_file.Rd | 6 - chinese.misc-0.1.9/chinese.misc/man/slim_text.Rd | 2 chinese.misc-0.1.9/chinese.misc/man/sort_tf.Rd | 4 chinese.misc-0.1.9/chinese.misc/man/sparse_left.Rd |only chinese.misc-0.1.9/chinese.misc/man/topic_trend.Rd | 2 chinese.misc-0.1.9/chinese.misc/man/word_cor.Rd | 4 41 files changed, 186 insertions(+), 217 deletions(-)
Title: Text Mining Package
Description: A framework for text mining applications within R.
Author: Ingo Feinerer [aut, cre] (<https://orcid.org/0000-0001-7656-8338>),
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>),
Artifex Software, Inc. [ctb, cph] (pdf_info.ps taken from GPL
Ghostscript)
Maintainer: Ingo Feinerer <feinerer@logic.at>
Diff between tm versions 0.7-3 dated 2017-12-06 and 0.7-4 dated 2018-06-19
DESCRIPTION | 15 ++++++++------- MD5 | 18 +++++++++--------- R/tokenizer.R | 6 +++++- R/transform.R | 5 +++++ inst/NEWS.Rd | 9 +++++++++ inst/doc/extensions.pdf |binary inst/doc/tm.pdf |binary src/remove.c | 14 ++++++++++++++ src/scan.c | 21 +++++++++++++++++++-- src/tokenizer.cpp | 14 ++++++++------ 10 files changed, 77 insertions(+), 25 deletions(-)
Title: A Pipeline Toolkit for Reproducible Computation at Scale
Description: A general-purpose computational engine for data analysis,
drake rebuilds intermediate data objects when their dependencies change,
and it skips work when the results are already up to date.
Not every execution starts from scratch,
and completed projects have tangible evidence
that they are reproducible.
Extensive documentation, from beginner-friendly tutorials
to practical examples and more, is available at the reference website
<https://ropensci.github.io/drake/> and the online manual
<https://ropenscilabs.github.io/drake-manual/>.
Author: William Michael Landau [aut, cre],
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 5.1.2 dated 2018-04-10 and 5.2.1 dated 2018-06-19
drake-5.1.2/drake/R/basic_example.R |only drake-5.1.2/drake/R/lapply.R |only drake-5.1.2/drake/R/max_useful_jobs.R |only drake-5.1.2/drake/R/queue.R |only drake-5.1.2/drake/R/staged_parallelism.R |only drake-5.1.2/drake/inst/doc/best-practices.R |only drake-5.1.2/drake/inst/doc/best-practices.Rmd |only drake-5.1.2/drake/inst/doc/best-practices.html |only drake-5.1.2/drake/inst/doc/caution.R |only drake-5.1.2/drake/inst/doc/caution.Rmd |only drake-5.1.2/drake/inst/doc/caution.html |only drake-5.1.2/drake/inst/doc/debug.R |only drake-5.1.2/drake/inst/doc/debug.Rmd |only drake-5.1.2/drake/inst/doc/debug.html |only drake-5.1.2/drake/inst/doc/drake.R |only drake-5.1.2/drake/inst/doc/example-basic.R |only drake-5.1.2/drake/inst/doc/example-basic.Rmd |only drake-5.1.2/drake/inst/doc/example-basic.html |only drake-5.1.2/drake/inst/doc/example-gsp.R |only drake-5.1.2/drake/inst/doc/example-gsp.Rmd |only drake-5.1.2/drake/inst/doc/example-gsp.html |only drake-5.1.2/drake/inst/doc/example-packages.R |only drake-5.1.2/drake/inst/doc/example-packages.Rmd |only drake-5.1.2/drake/inst/doc/example-packages.html |only drake-5.1.2/drake/inst/doc/faq.Rmd |only drake-5.1.2/drake/inst/doc/faq.html |only drake-5.1.2/drake/inst/doc/graph.R |only drake-5.1.2/drake/inst/doc/graph.Rmd |only drake-5.1.2/drake/inst/doc/graph.html |only drake-5.1.2/drake/inst/doc/parallelism.R |only drake-5.1.2/drake/inst/doc/parallelism.Rmd |only drake-5.1.2/drake/inst/doc/parallelism.html |only drake-5.1.2/drake/inst/doc/storage.R |only drake-5.1.2/drake/inst/doc/storage.Rmd |only drake-5.1.2/drake/inst/doc/storage.html |only drake-5.1.2/drake/inst/doc/timing.R |only drake-5.1.2/drake/inst/doc/timing.Rmd |only drake-5.1.2/drake/inst/doc/timing.html |only drake-5.1.2/drake/inst/examples/basic |only drake-5.1.2/drake/inst/stubs |only drake-5.1.2/drake/inst/testing/built_basic_example_v4.3.0.zip |only drake-5.1.2/drake/man/next_stage.Rd |only drake-5.1.2/drake/tests/scenarios/Makefile.R |only drake-5.1.2/drake/tests/scenarios/future.R |only drake-5.1.2/drake/tests/testthat/test-basic.R |only drake-5.1.2/drake/tests/testthat/test-queue.R |only drake-5.1.2/drake/vignettes/best-practices.Rmd |only drake-5.1.2/drake/vignettes/caution.Rmd |only drake-5.1.2/drake/vignettes/debug.Rmd |only drake-5.1.2/drake/vignettes/example-basic.Rmd |only drake-5.1.2/drake/vignettes/example-gsp.Rmd |only drake-5.1.2/drake/vignettes/example-packages.Rmd |only drake-5.1.2/drake/vignettes/faq.Rmd |only drake-5.1.2/drake/vignettes/graph.Rmd |only drake-5.1.2/drake/vignettes/parallelism.Rmd |only drake-5.1.2/drake/vignettes/storage.Rmd |only drake-5.1.2/drake/vignettes/timing.Rmd |only drake-5.2.1/drake/DESCRIPTION | 33 drake-5.2.1/drake/MD5 | 451 +++---- drake-5.2.1/drake/NAMESPACE | 25 drake-5.2.1/drake/R/Makefile.R | 56 drake-5.2.1/drake/R/attempt.R | 18 drake-5.2.1/drake/R/build.R | 37 drake-5.2.1/drake/R/build_times.R | 5 drake-5.2.1/drake/R/cache.R | 121 +- drake-5.2.1/drake/R/cache_log.R | 4 drake-5.2.1/drake/R/cache_namespaces.R | 2 drake-5.2.1/drake/R/cache_ui.R | 16 drake-5.2.1/drake/R/check.R | 31 drake-5.2.1/drake/R/clean.R | 15 drake-5.2.1/drake/R/color.R | 2 drake-5.2.1/drake/R/config.R | 139 +- drake-5.2.1/drake/R/console.R | 147 ++ drake-5.2.1/drake/R/dataframes_graph.R | 18 drake-5.2.1/drake/R/dataframes_graph_utils.R | 78 - 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Title: Brazilian Economic Time Series
Description: It provides access to and information about the most important
Brazilian economic time series - from the Getulio Vargas Foundation <http://portal.fgv.br/en>,
the Central Bank of Brazil <http://www.bcb.gov.br> and the Brazilian Institute of Geography
and Statistics <http://www.ibge.gov.br>. It also presents tools for managing, analysing (e.g.
generating dynamic reports with a complete analysis of a series) and exporting
these time series.
Author: Pedro Costa Ferreira [aut],
Talitha Speranza [aut, cre],
Jonatha Costa [aut],
Fernando Teixeira [ctb],
Daiane Marcolino [ctb]
Maintainer: Talitha Speranza <talitha.speranza@fgv.br>
Diff between BETS versions 0.4.3 dated 2018-06-05 and 0.4.4 dated 2018-06-19
BETS-0.4.3/BETS/inst/extraction.R |only BETS-0.4.3/BETS/inst/graphs |only BETS-0.4.3/BETS/vignettes/BETS_basic_usage.fdb_latexmk |only BETS-0.4.3/BETS/vignettes/BETS_basic_usage.fls |only BETS-0.4.4/BETS/DESCRIPTION | 6 +++--- BETS-0.4.4/BETS/MD5 | 12 ++++-------- BETS-0.4.4/BETS/R/get.series.R | 2 +- BETS-0.4.4/BETS/inst/doc/BETS_basic_usage.html | 4 ++-- BETS-0.4.4/BETS/inst/macro_dashboard.pdf |only 9 files changed, 10 insertions(+), 14 deletions(-)
Title: Use Image in 'ggplot2'
Description: Supports image files and graphic objects to be visualized in
'ggplot2' graphic system.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggimage versions 0.1.6 dated 2018-05-27 and 0.1.7 dated 2018-06-19
DESCRIPTION | 6 +-- MD5 | 16 +++++----- NAMESPACE | 2 + NEWS.md | 4 ++ R/geom_flag.R | 72 +++++++++++++++++++++++++++++++++++++++++++++-- inst/doc/ggimage.html | 4 +- man/geom_flag.Rd | 2 - man/geom_worldcup2018.Rd |only man/list.flag.Rd | 2 - man/list.worldcup2018.Rd |only 10 files changed, 92 insertions(+), 16 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-06 0.1.0
Title: Get Data Frame Representations of 'Elasticsearch' Results
Description: 'Elasticsearch' is an open-source, distributed, document-based datastore
(<https://www.elastic.co/products/elasticsearch>).
It provides an 'HTTP' 'API' for querying the database and extracting datasets, but that
'API' was not designed for common data science workflows like pulling large batches of
records and normalizing those documents into a data frame that can be used as a training
dataset for statistical models. 'uptasticsearch' provides an interface for 'Elasticsearch'
that is explicitly designed to make these data science workflows easy and fun.
Author: James Lamb [aut, cre],
Nick Paras [aut],
Austin Dickey [aut],
Michael Frasco [ctb],
Weiwen Gu [ctb],
Will Dearden [ctb],
Uptake Technologies Inc. [cph]
Maintainer: James Lamb <james.lamb@uptake.com>
Diff between uptasticsearch versions 0.2.0 dated 2018-04-13 and 0.3.0 dated 2018-06-19
uptasticsearch-0.2.0/uptasticsearch/R/elasticsearch_eda_funs.R |only uptasticsearch-0.2.0/uptasticsearch/R/elasticsearch_parsers.R |only uptasticsearch-0.2.0/uptasticsearch/tests/testthat/test-elasticsearch_eda_funs.R |only uptasticsearch-0.2.0/uptasticsearch/tests/testthat/test-elasticsearch_parsers.R |only uptasticsearch-0.3.0/uptasticsearch/DESCRIPTION | 10 uptasticsearch-0.3.0/uptasticsearch/MD5 | 51 - uptasticsearch-0.3.0/uptasticsearch/NAMESPACE | 8 uptasticsearch-0.3.0/uptasticsearch/NEWS.md | 32 uptasticsearch-0.3.0/uptasticsearch/R/assertions.R |only uptasticsearch-0.3.0/uptasticsearch/R/chomp_aggs.R |only uptasticsearch-0.3.0/uptasticsearch/R/chomp_hits.R |only uptasticsearch-0.3.0/uptasticsearch/R/es_search.R |only uptasticsearch-0.3.0/uptasticsearch/R/get_counts.R |only uptasticsearch-0.3.0/uptasticsearch/R/get_fields.R |only uptasticsearch-0.3.0/uptasticsearch/R/parse_date_time.R |only uptasticsearch-0.3.0/uptasticsearch/R/unpack_nested_data.R |only uptasticsearch-0.3.0/uptasticsearch/R/uptasticsearch.R | 25 uptasticsearch-0.3.0/uptasticsearch/README.md | 25 uptasticsearch-0.3.0/uptasticsearch/inst/testdata/empty_terms.json |only uptasticsearch-0.3.0/uptasticsearch/inst/testdata/es5_shakespeare_mapping.json |only uptasticsearch-0.3.0/uptasticsearch/inst/testdata/es6_shakespeare_mapping.json |only uptasticsearch-0.3.0/uptasticsearch/inst/testdata/legacy_shakespeare_mapping.json |only uptasticsearch-0.3.0/uptasticsearch/inst/testdata/sample.json |only uptasticsearch-0.3.0/uptasticsearch/man/chomp_aggs.Rd | 5 uptasticsearch-0.3.0/uptasticsearch/man/chomp_hits.Rd | 13 uptasticsearch-0.3.0/uptasticsearch/man/doc_shared.Rd | 7 uptasticsearch-0.3.0/uptasticsearch/man/es_search.Rd | 12 uptasticsearch-0.3.0/uptasticsearch/man/get_counts.Rd | 9 uptasticsearch-0.3.0/uptasticsearch/man/get_fields.Rd | 4 uptasticsearch-0.3.0/uptasticsearch/man/parse_date_time.Rd | 2 uptasticsearch-0.3.0/uptasticsearch/man/unpack_nested_data.Rd | 2 uptasticsearch-0.3.0/uptasticsearch/tests/testthat/test-chomp_aggs.R |only uptasticsearch-0.3.0/uptasticsearch/tests/testthat/test-chomp_hits.R |only uptasticsearch-0.3.0/uptasticsearch/tests/testthat/test-es_search.R |only uptasticsearch-0.3.0/uptasticsearch/tests/testthat/test-get_fields.R |only uptasticsearch-0.3.0/uptasticsearch/tests/testthat/test-integration.R | 458 +++++++++- uptasticsearch-0.3.0/uptasticsearch/tests/testthat/test-parse_date_time.R |only uptasticsearch-0.3.0/uptasticsearch/tests/testthat/test-unpack_nested_data.R |only 38 files changed, 597 insertions(+), 66 deletions(-)
More information about uptasticsearch at CRAN
Permanent link
Title: Randomization Inference Tools
Description: Tools for randomization inference.
Author: Jake Bowers <jwbowers@illinois.edu>, Mark Fredrickson
<mark.m.fredrickson@gmail.com>, and Ben Hansen <ben.hansen@umich.edu>
Maintainer: Jake Bowers <jwbowers@illinois.edu>
Diff between RItools versions 0.1-15 dated 2016-05-30 and 0.1-16 dated 2018-06-19
RItools-0.1-15/RItools/NEWS |only RItools-0.1-16/RItools/DESCRIPTION | 11 +-- RItools-0.1-16/RItools/MD5 | 48 ++++++++--------- RItools-0.1-16/RItools/NEWS.md |only RItools-0.1-16/RItools/R/print.xbal.R | 2 RItools-0.1-16/RItools/README.md | 4 - RItools-0.1-16/RItools/inst/doc/RItools.pdf |binary RItools-0.1-16/RItools/man/balanceplot.Rd | 1 RItools-0.1-16/RItools/man/flatten.xbalresult.Rd | 1 RItools-0.1-16/RItools/man/formula.xbal.Rd | 1 RItools-0.1-16/RItools/man/harmonic.Rd | 1 RItools-0.1-16/RItools/man/makePval.Rd | 1 RItools-0.1-16/RItools/man/naImpute.Rd | 1 RItools-0.1-16/RItools/man/nuclearplants.Rd | 1 RItools-0.1-16/RItools/man/plot.xbal.Rd | 1 RItools-0.1-16/RItools/man/print.xbal.Rd | 5 - RItools-0.1-16/RItools/man/subset.xbal.Rd | 1 RItools-0.1-16/RItools/man/withOptions.Rd | 1 RItools-0.1-16/RItools/man/xBalance.Rd | 7 +- RItools-0.1-16/RItools/man/xBalance.find.goodstrats.Rd | 1 RItools-0.1-16/RItools/man/xBalance.make.stratwts.Rd | 1 RItools-0.1-16/RItools/man/xBalance.makeMM.Rd | 1 RItools-0.1-16/RItools/man/xBalance.makepooledsd.Rd | 1 RItools-0.1-16/RItools/man/xBalanceEngine.Rd | 1 RItools-0.1-16/RItools/man/xtable.xbal.Rd | 1 RItools-0.1-16/RItools/tests/testthat/test.utils.R | 9 --- 26 files changed, 37 insertions(+), 65 deletions(-)
Title: Data from the M-Competitions
Description: The 1001 time series from the M-competition (Makridakis et al. 1982) <DOI:10.1002/for.3980010202> and the 3003 time series from the IJF-M3 competition (Makridakis and Hibon, 2000) <DOI:10.1016/S0169-2070(00)00057-1>.
Author: Rob Hyndman [aut, cre, cph] (<https://orcid.org/0000-0002-2140-5352>),
Muhammad Akram [ctb],
Christoph Bergmeir [ctb] (<https://orcid.org/0000-0002-3665-9021>),
Mitchell O'Hara-Wild [ctb]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between Mcomp versions 2.7 dated 2018-01-24 and 2.8 dated 2018-06-19
DESCRIPTION | 17 +++++++------- MD5 | 12 +++++----- NEWS.md | 3 ++ R/plots.R | 14 ++++++------ README.md | 47 +++++++++++++++++++++++++---------------- man/figures/README-usage-1.png |binary man/plot.Mdata.Rd | 4 +-- 7 files changed, 56 insertions(+), 41 deletions(-)
Title: Vehicular Emissions by Top-Down Methods
Description: Creates emissions for use in air quality models. Vehicular emissions
are estimated by a top-down approach, total emissions are calculated using the
statistical description of the fleet of vehicles, the emission is spatially
distributed according to satellite images or openstreetmap data
<https://www.openstreetmap.org> and then distributed temporarily
(Vara-Vela et al., 2016, <doi:10.5194/acp-16-777-2016>).
Author: Daniel Schuch [aut, cre] (<https://orcid.org/0000-0001-5977-4519>),
Sergio Ibarra-Espinosa [aut] (<https://orcid.org/0000-0002-3162-1905>)
Maintainer: Daniel Schuch <schuch@usp.br>
Diff between EmissV versions 0.664.5 dated 2018-05-31 and 0.664.7 dated 2018-06-19
DESCRIPTION | 17 +-- MD5 | 56 ++++++++--- NAMESPACE | 15 ++- NEWS.md | 13 ++ R/areaSouce.R | 5 - R/emission.R | 39 ++++---- R/emissionfactors.R | 8 - R/gridinfo.R | 4 R/lineSource.R | 236 +++++++++++++++++++++++++++++++++++++++++--------- R/plumerise.R | 16 +-- R/pointSource.R | 21 ++-- R/rasterSource.R | 11 +- R/read.R | 65 +++++++------ R/streetDist.R |only R/totalEmission.R | 17 +-- R/totalvoc.R | 22 ++-- man/emissionFactor.Rd | 8 - man/lineSource.Rd | 16 ++- man/streetDist.Rd |only man/totalEmission.Rd | 2 tests |only 21 files changed, 391 insertions(+), 180 deletions(-)
Title: Effect Displays for Linear, Generalized Linear, and Other Models
Description: Graphical and tabular effect displays, e.g., of interactions, for
various statistical models with linear predictors.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Michael Friendly [aut],
Jangman Hong [aut],
Robert Andersen [ctb],
David Firth [ctb],
Steve Taylor [ctb],
R Core Team [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between effects versions 4.0-1 dated 2018-03-28 and 4.0-2 dated 2018-06-19
effects-4.0-1/effects/vignettes/defaultMethod.bib |only effects-4.0-2/effects/DESCRIPTION | 11 effects-4.0-2/effects/MD5 | 42 effects-4.0-2/effects/NAMESPACE | 157 +- effects-4.0-2/effects/NEWS | 562 ++++---- effects-4.0-2/effects/R/Effect-methods.R | 70 - effects-4.0-2/effects/R/Effect.R | 1199 +++++++++---------- effects-4.0-2/effects/R/plot-methods.R | 68 - effects-4.0-2/effects/R/predictorEffects.R | 22 effects-4.0-2/effects/R/utilities.R | 22 effects-4.0-2/effects/build/vignette.rds |binary effects-4.0-2/effects/inst/doc/effectsMethods.R | 155 ++ effects-4.0-2/effects/inst/doc/effectsMethods.Rnw | 273 +++- effects-4.0-2/effects/inst/doc/effectsMethods.pdf |binary effects-4.0-2/effects/inst/doc/partial-residuals.pdf |binary effects-4.0-2/effects/man/effect-methods.Rd | 47 effects-4.0-2/effects/man/effect.Rd | 39 effects-4.0-2/effects/man/effects-package.Rd | 14 effects-4.0-2/effects/man/predictorEffects.Rd | 4 effects-4.0-2/effects/man/summary.effect.Rd | 2 effects-4.0-2/effects/tests/effect-tests-2.R | 3 effects-4.0-2/effects/vignettes/effectsMethods.Rnw | 273 +++- effects-4.0-2/effects/vignettes/effectsMethods.bib |only 23 files changed, 1762 insertions(+), 1201 deletions(-)
Title: Comparison of Algorithms with Iterative Sample Size Estimation
Description: Functions for performing experimental comparisons of algorithms
using adequate sample sizes for power and accuracy.
Author: Felipe Campelo [aut, cre],
Fernanda Takahashi [aut]
Maintainer: Felipe Campelo <fcampelo@ufmg.br>
Diff between CAISEr versions 0.2.1 dated 2017-10-29 and 0.3.0 dated 2018-06-19
DESCRIPTION | 12 +- MD5 | 42 +++---- NAMESPACE | 2 NEWS.md | 19 +++ R/calc_nreps2.R | 86 +++++++------- R/calc_power_curve.R | 10 + R/plot_CAISErPowercurve.R | 18 ++- R/print_caiser.R | 1 R/run_experiment.R | 166 +++++++++++++++------------- R/summary_CAISErPowercurve.R | 57 ++++++--- R/summary_caiser.R | 2 R/utils.R | 49 ++++++++ README.md | 10 - build/vignette.rds |binary inst/doc/Adapting_Algorithm_for_CAISEr.html | 16 +- inst/extdata/vignette_results.RData |binary man/TSP.dist.Rd |only man/calc_nreps2.Rd | 25 +++- man/calc_power_curve.Rd | 5 man/my.SANN.Rd |only man/plot.CAISErPowercurve.Rd | 4 man/run_experiment.Rd | 19 ++- man/summary.CAISErPowercurve.Rd | 5 23 files changed, 361 insertions(+), 187 deletions(-)
Title: Fetch 'Phylogenies' from Many Sources
Description: Includes methods for fetching 'phylogenies' from a variety
of sources, currently includes 'Phylomatic'
(<http://phylodiversity.net/phylomatic>), with more in the future.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between brranching versions 0.2.0 dated 2016-04-14 and 0.3.0 dated 2018-06-19
DESCRIPTION | 27 ++++++++++++++++----------- LICENSE | 2 +- MD5 | 30 +++++++++++++++++------------- NAMESPACE | 7 +++---- NEWS.md | 14 ++++++++++++++ R/brranching-package.R | 4 ++-- R/phylomatic.R | 23 ++++++++++------------- R/phylomatic_local.R | 3 +-- R/rbladj.R |only README.md | 17 ++++++++--------- man/brranching-package.Rd | 3 +-- man/phylomatic.Rd | 7 +++---- man/phylomatic_local.Rd | 6 ++---- man/phylomatic_names.Rd | 1 - man/rbladj.Rd |only man/tpl.Rd | 1 - tools |only 17 files changed, 78 insertions(+), 67 deletions(-)