Title: Thematic Map Tools
Description: Set of tools for reading and processing spatial data. The aim is to supply the workflow to create thematic maps. This package also facilitates 'tmap', the package for visualizing thematic maps.
Author: Martijn Tennekes [aut, cre]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmaptools versions 1.2-4 dated 2018-04-10 and 2.0 dated 2018-07-14
tmaptools-1.2-4/tmaptools/R/bb_sp.R |only tmaptools-1.2-4/tmaptools/inst |only tmaptools-1.2-4/tmaptools/man/bb_sp.Rd |only tmaptools-1.2-4/tmaptools/man/projection_units.Rd |only tmaptools-2.0/tmaptools/DESCRIPTION | 19 - tmaptools-2.0/tmaptools/MD5 | 135 ++++----- tmaptools-2.0/tmaptools/NAMESPACE | 26 - tmaptools-2.0/tmaptools/NEWS | 10 tmaptools-2.0/tmaptools/R/aggregate_map.R | 8 tmaptools-2.0/tmaptools/R/append_data.R | 7 tmaptools-2.0/tmaptools/R/approx_areas.R | 153 ++++++---- tmaptools-2.0/tmaptools/R/approx_distances.R | 294 ++++++++++++-------- tmaptools-2.0/tmaptools/R/bb.R | 153 +++++++--- tmaptools-2.0/tmaptools/R/bb_poly.R |only tmaptools-2.0/tmaptools/R/calc_densities.R | 23 - tmaptools-2.0/tmaptools/R/crop_shape.R | 85 ++--- tmaptools-2.0/tmaptools/R/deprecated.R |only tmaptools-2.0/tmaptools/R/geocode_OSM.R | 39 +- tmaptools-2.0/tmaptools/R/get_IDs.R | 8 tmaptools-2.0/tmaptools/R/get_asp_ratio.R | 11 tmaptools-2.0/tmaptools/R/get_brewer_pal.R | 3 tmaptools-2.0/tmaptools/R/get_proj4_code.R | 54 +-- tmaptools-2.0/tmaptools/R/is_projected.R | 12 tmaptools-2.0/tmaptools/R/line_functions.R | 9 tmaptools-2.0/tmaptools/R/map_coloring.R | 27 + tmaptools-2.0/tmaptools/R/onLoad.R | 3 tmaptools-2.0/tmaptools/R/palette_explorer.R | 226 ++++++++++----- tmaptools-2.0/tmaptools/R/pkg.R | 4 tmaptools-2.0/tmaptools/R/projection_units.R | 137 ++++----- tmaptools-2.0/tmaptools/R/read_GPX.R | 11 tmaptools-2.0/tmaptools/R/read_osm.R | 128 ++------ tmaptools-2.0/tmaptools/R/read_shape.R | 7 tmaptools-2.0/tmaptools/R/sample_dots.R | 26 + tmaptools-2.0/tmaptools/R/sbind.R | 25 - tmaptools-2.0/tmaptools/R/set_projection.R | 221 +++++++++------ tmaptools-2.0/tmaptools/R/simplify_shape.R | 66 ++-- tmaptools-2.0/tmaptools/R/smooth_map.R | 86 +++-- tmaptools-2.0/tmaptools/R/smooth_raster_cover.R | 37 +- tmaptools-2.0/tmaptools/R/to_raster.R | 40 +- tmaptools-2.0/tmaptools/R/xxx_raster.R | 251 +++++++---------- tmaptools-2.0/tmaptools/R/xxx_scales.R | 125 +++++--- tmaptools-2.0/tmaptools/man/aggregate_map.Rd | 26 - tmaptools-2.0/tmaptools/man/append_data.Rd | 25 - tmaptools-2.0/tmaptools/man/approx_areas.Rd | 34 -- tmaptools-2.0/tmaptools/man/approx_distances.Rd | 24 - tmaptools-2.0/tmaptools/man/bb.Rd | 27 + tmaptools-2.0/tmaptools/man/bb_poly.Rd |only tmaptools-2.0/tmaptools/man/calc_densities.Rd | 24 - tmaptools-2.0/tmaptools/man/crop_shape.Rd | 23 - tmaptools-2.0/tmaptools/man/deprecated_functions.Rd |only tmaptools-2.0/tmaptools/man/double_line.Rd | 8 tmaptools-2.0/tmaptools/man/geocode_OSM.Rd | 7 tmaptools-2.0/tmaptools/man/get_IDs.Rd | 4 tmaptools-2.0/tmaptools/man/get_asp_ratio.Rd | 9 tmaptools-2.0/tmaptools/man/get_brewer_pal.Rd | 5 tmaptools-2.0/tmaptools/man/get_neighbours.Rd |only tmaptools-2.0/tmaptools/man/get_proj4.Rd | 10 tmaptools-2.0/tmaptools/man/is_projected.Rd | 4 tmaptools-2.0/tmaptools/man/map_coloring.Rd | 9 tmaptools-2.0/tmaptools/man/palette_explorer.Rd | 10 tmaptools-2.0/tmaptools/man/points_to_raster.Rd | 17 - tmaptools-2.0/tmaptools/man/poly_to_raster.Rd | 8 tmaptools-2.0/tmaptools/man/read_GPX.Rd | 14 tmaptools-2.0/tmaptools/man/read_osm.Rd | 57 --- tmaptools-2.0/tmaptools/man/read_shape.Rd | 9 tmaptools-2.0/tmaptools/man/rev_geocode_OSM.Rd | 3 tmaptools-2.0/tmaptools/man/sample_dots.Rd | 31 +- tmaptools-2.0/tmaptools/man/sbind.Rd | 4 tmaptools-2.0/tmaptools/man/set_projection.Rd | 17 - tmaptools-2.0/tmaptools/man/simplify_shape.Rd | 25 - tmaptools-2.0/tmaptools/man/smooth_map.Rd | 25 - tmaptools-2.0/tmaptools/man/smooth_raster_cover.Rd | 15 - tmaptools-2.0/tmaptools/man/tmaptools-package.Rd | 6 73 files changed, 1579 insertions(+), 1370 deletions(-)
Title: Regression Models for Interval Censored Data
Description: Regression models for interval censored data. Currently supports
Cox-PH, proportional odds, and accelerated failure time models. Allows for
semi and fully parametric models (parametric only for accelerated failure
time models) and Bayesian parametric models. Includes functions for easy visual
diagnostics of model fits and imputation of censored data.
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman <pistacliffcho@gmail.com>
Diff between icenReg versions 2.0.7 dated 2017-12-07 and 2.0.8 dated 2018-07-14
DESCRIPTION | 8 +-- MD5 | 55 +++++++++++++++---------- NAMESPACE | 3 - NEWS | 4 + R/RcppExports.R | 8 +-- R/ic_bayes.R | 4 - R/ic_np.R | 32 +++++++++++--- R/plottingFunctions.R | 72 +++++++++++++++++++++++++++++---- build/vignette.rds |binary inst/doc/icenReg.R | 88 +++++++++++++++++++++++++++-------------- inst/doc/icenReg.Rnw | 55 +++++++++++++++++++++---- inst/doc/icenReg.pdf |binary man/bayesControls.Rd | 2 man/ic_bayes.Rd | 2 man/ic_np.Rd | 5 +- man/lines.icenReg_fit.Rd |only man/plot.icenReg_fit.Rd |only src/RcppExports.cpp | 8 +-- src/icenReg.cpp | 2 src/icenReg_files/EMICM.cpp | 42 ++++++++++++------- src/icenReg_files/EMICM.h | 8 ++- src/icenReg_files/ic_bayes.cpp | 27 +++++++----- src/icenReg_files/ic_par.cpp | 6 +- src/registeringRoutines.c | 48 +++++++++++----------- vignettes/icenReg-005.pdf |only vignettes/icenReg-009.pdf |only vignettes/icenReg-012.pdf |only vignettes/icenReg-017.pdf |only vignettes/icenReg-018.pdf |only vignettes/icenReg-021.pdf |only vignettes/icenReg-023.pdf |only vignettes/icenReg-025.pdf |only vignettes/icenReg-026.pdf |only vignettes/icenReg.Rnw | 55 +++++++++++++++++++++---- 34 files changed, 377 insertions(+), 157 deletions(-)
Title: Whitening and High-Dimensional Canonical Correlation Analysis
Description: Implements the whitening methods (ZCA, PCA, Cholesky,
ZCA-cor, and PCA-cor) discussed in Kessy, Lewin, and Strimmer (2018)
"Optimal whitening and decorrelation", The American Statistician,
<doi:10.1080/00031305.2016.1277159>, as well as the whitening
approach to canonical correlation analysis allowing negative canonical
correlations described in Jendoubi and Strimmer (2018) "A whitening
approach to probabilistic canonical correlation analysis for omics data
integration", <arXiv:1802.03490>.
Author: Korbinian Strimmer, Takoua Jendoubi, Agnan Kessy, Alex Lewin
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between whitening versions 1.0.0 dated 2018-03-06 and 1.1.0 dated 2018-07-14
whitening-1.0.0/whitening/inst/doc/NCI60.R |only whitening-1.1.0/whitening/DESCRIPTION | 15 - whitening-1.1.0/whitening/MD5 | 27 ++- whitening-1.1.0/whitening/NAMESPACE | 3 whitening-1.1.0/whitening/NEWS | 14 + whitening-1.1.0/whitening/R/corplot.R |only whitening-1.1.0/whitening/R/internal.R |only whitening-1.1.0/whitening/R/scca.R | 57 ++++--- whitening-1.1.0/whitening/R/whiteningMatrix.R | 4 whitening-1.1.0/whitening/data |only whitening-1.1.0/whitening/inst/doc/index.html | 2 whitening-1.1.0/whitening/inst/doc/lusc.R |only whitening-1.1.0/whitening/inst/doc/nutrimouse.R | 171 +++++++++++++++++---- whitening-1.1.0/whitening/man/corplot.Rd |only whitening-1.1.0/whitening/man/lusc.Rd |only whitening-1.1.0/whitening/man/nutrimouse.Rd |only whitening-1.1.0/whitening/man/scca.Rd | 41 ++--- whitening-1.1.0/whitening/man/whitening.package.Rd | 5 18 files changed, 243 insertions(+), 96 deletions(-)
Title: Fast Bayesian Methods for AB Testing
Description: A suite of functions that allow the user to analyze A/B test
data in a Bayesian framework. Intended to be a drop-in replacement for
common frequentist hypothesis test such as the t-test and chi-sq test.
Author: Frank Portman [aut, cre]
Maintainer: Frank Portman <frank1214@gmail.com>
Diff between bayesAB versions 1.1.0 dated 2017-09-25 and 1.1.1 dated 2018-07-14
bayesAB-1.1.0/bayesAB/tests/testthat/Rplots.pdf |only bayesAB-1.1.1/bayesAB/DESCRIPTION | 10 bayesAB-1.1.1/bayesAB/MD5 | 27 - bayesAB-1.1.1/bayesAB/NAMESPACE | 1 bayesAB-1.1.1/bayesAB/NEWS.md | 7 bayesAB-1.1.1/bayesAB/R/combine.R | 1 bayesAB-1.1.1/bayesAB/R/generics.R | 8 bayesAB-1.1.1/bayesAB/R/makePlots.R | 2 bayesAB-1.1.1/bayesAB/build/vignette.rds |binary bayesAB-1.1.1/bayesAB/inst/doc/introduction.html | 424 ++++++++++++++----- bayesAB-1.1.1/bayesAB/tests/testthat/test-combine.R | 6 bayesAB-1.1.1/bayesAB/tests/testthat/test-generics.R | 4 bayesAB-1.1.1/bayesAB/vignettes/extra/priors_blog |only 13 files changed, 364 insertions(+), 126 deletions(-)
Title: Coloured Formatting for Columns
Description: Provides a 'pillar' generic designed for formatting columns
of data using the full range of colours provided by modern terminals.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between pillar versions 1.2.3 dated 2018-05-25 and 1.3.0 dated 2018-07-14
DESCRIPTION | 10 MD5 | 230 +++++++++++++------ NAMESPACE | 5 NEWS.md | 45 +++ R/extent.R | 3 R/multi.R | 275 +++++++++++++---------- R/pillar.R | 31 +- R/rowid-data.R | 8 R/shaft-simple.R | 8 R/shaft.R | 10 R/styles.R | 22 + R/tick.R | 6 R/type.R | 35 +- R/utils.R | 7 R/zzz.R | 4 man/colonnade.Rd | 53 ++-- man/format_type_sum.Rd | 18 + man/pillar.Rd | 3 man/pillar_shaft.Rd | 5 tests/testthat/bw-out/matrix-col-named.txt |only tests/testthat/bw-out/matrix-col.txt |only tests/testthat/bw-out/multi-07.txt | 5 tests/testthat/bw-out/multi-08.txt | 5 tests/testthat/bw-out/multi-09.txt | 5 tests/testthat/bw-out/multi-10.txt | 5 tests/testthat/bw-out/multi-11.txt | 5 tests/testthat/bw-out/multi-12.txt | 5 tests/testthat/bw-out/multi-17.txt | 5 tests/testthat/bw-out/multi-24.txt | 10 tests/testthat/bw-out/multi-31.txt | 10 tests/testthat/bw-out/multi-38.txt | 10 tests/testthat/bw-out/multi-extra-10.txt | 1 tests/testthat/bw-out/str-01-1382-59.txt |only tests/testthat/bw-out/str-02-837-54.txt 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tests/testthat/out-native/multi-17.txt | 5 tests/testthat/out-native/multi-24.txt | 10 tests/testthat/out-native/multi-31.txt | 10 tests/testthat/out-native/multi-38.txt | 10 tests/testthat/out-native/multi-extra-10.txt | 1 tests/testthat/out-native/str-01-1382-59.txt |only tests/testthat/out-native/str-02-837-54.txt |only tests/testthat/out-native/str-03-455-32.txt |only tests/testthat/out-native/str-04-855-55.txt |only tests/testthat/out-native/str-05-552-54.txt |only tests/testthat/out-native/str-06-1031-49.txt |only tests/testthat/out-native/str-07-429-38.txt |only tests/testthat/out-native/str-08-633-54.txt |only tests/testthat/out-native/str-09-1496-39.txt |only tests/testthat/out-native/str-10-493-31.txt |only tests/testthat/out-native/str-11-1130-52.txt |only tests/testthat/out-native/str-12-1310-58.txt |only tests/testthat/out-native/str-13-484-47.txt |only tests/testthat/out-native/str-14-779-55.txt |only tests/testthat/out-native/str-15-694-46.txt |only 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tests/testthat/out/matrix-col-named.txt |only tests/testthat/out/matrix-col.txt |only tests/testthat/out/multi-07.txt | 5 tests/testthat/out/multi-08.txt | 5 tests/testthat/out/multi-09.txt | 5 tests/testthat/out/multi-10.txt | 5 tests/testthat/out/multi-11.txt | 5 tests/testthat/out/multi-12.txt | 5 tests/testthat/out/multi-17.txt | 5 tests/testthat/out/multi-24.txt | 10 tests/testthat/out/multi-31.txt | 10 tests/testthat/out/multi-38.txt | 10 tests/testthat/out/multi-extra-10.txt | 1 tests/testthat/out/str-01-1382-59.txt |only tests/testthat/out/str-02-837-54.txt |only tests/testthat/out/str-03-455-32.txt |only tests/testthat/out/str-04-855-55.txt |only tests/testthat/out/str-05-552-54.txt |only tests/testthat/out/str-06-1031-49.txt |only tests/testthat/out/str-07-429-38.txt |only tests/testthat/out/str-08-633-54.txt |only tests/testthat/out/str-09-1496-39.txt |only tests/testthat/out/str-10-493-31.txt |only tests/testthat/out/str-11-1130-52.txt |only 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| 5 tests/testthat/test-format_multi.R | 232 ++++++++++++++++++- tests/testthat/test-format_numeric.R | 4 tests/testthat/test-ticks.R | 16 - 167 files changed, 968 insertions(+), 368 deletions(-)
Title: Miscellaneous Functions for the USGS INL Project Office
Description: A collection of functions for creating high-level graphics,
performing raster-based analysis, processing MODFLOW-based models,
selecting subsets using a genetic algorithm, creating interactive web maps,
etc. Used to support packages and scripts written by researchers at the
United States Geological Survey (USGS) Idaho National Laboratory (INL)
Project Office.
Author: Jason C. Fisher [aut, cre] (<https://orcid.org/0000-0001-9032-8912>)
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between inlmisc versions 0.4.0 dated 2018-04-10 and 0.4.2 dated 2018-07-14
inlmisc-0.4.0/inlmisc/inst/htmlwidgets/plugins/leaflet-search/leaflet-search-old.css |only inlmisc-0.4.0/inlmisc/inst/htmlwidgets/plugins/leaflet-search/leaflet-search.css |only inlmisc-0.4.2/inlmisc/DESCRIPTION | 18 inlmisc-0.4.2/inlmisc/MD5 | 79 +-- inlmisc-0.4.2/inlmisc/NAMESPACE | 7 inlmisc-0.4.2/inlmisc/NEWS.md | 41 + inlmisc-0.4.2/inlmisc/R/AddColorKey.R | 13 inlmisc-0.4.2/inlmisc/R/AddGradientLegend.R | 4 inlmisc-0.4.2/inlmisc/R/AddInsetMap.R | 73 +-- inlmisc-0.4.2/inlmisc/R/AddPoints.R | 8 inlmisc-0.4.2/inlmisc/R/AddScaleBar.R | 186 +++++--- inlmisc-0.4.2/inlmisc/R/AddWebMapElements.R | 22 inlmisc-0.4.2/inlmisc/R/ExtractAlongTransect.R | 26 - inlmisc-0.4.2/inlmisc/R/GetTolColors.R | 177 +++++-- inlmisc-0.4.2/inlmisc/R/Grid2Polygons.R | 7 inlmisc-0.4.2/inlmisc/R/PlotCrossSection.R | 27 - inlmisc-0.4.2/inlmisc/R/PlotGraph.R | 80 ++- inlmisc-0.4.2/inlmisc/R/PlotMap.R | 86 ++- inlmisc-0.4.2/inlmisc/R/PrintFigure.R |only inlmisc-0.4.2/inlmisc/R/RecreateLibrary.R | 5 inlmisc-0.4.2/inlmisc/R/SetPolygons.R | 16 inlmisc-0.4.2/inlmisc/R/ToScientific.R | 4 inlmisc-0.4.2/inlmisc/README.md | 12 inlmisc-0.4.2/inlmisc/inst/extdata/city.geojson |only inlmisc-0.4.2/inlmisc/inst/extdata/county.geojson |only inlmisc-0.4.2/inlmisc/inst/htmlwidgets/plugins/leaflet-search/leaflet-search.min.css |only inlmisc-0.4.2/inlmisc/inst/htmlwidgets/plugins/leaflet-search/leaflet-search.min.js | 2 inlmisc-0.4.2/inlmisc/inst/misc/preamble.tex | 229 +++++----- inlmisc-0.4.2/inlmisc/man/AddColorKey.Rd | 13 inlmisc-0.4.2/inlmisc/man/AddGradientLegend.Rd | 4 inlmisc-0.4.2/inlmisc/man/AddInsetMap.Rd | 34 - inlmisc-0.4.2/inlmisc/man/AddPoints.Rd | 6 inlmisc-0.4.2/inlmisc/man/AddScaleBar.Rd | 60 +- inlmisc-0.4.2/inlmisc/man/AddWebMapElements.Rd | 10 inlmisc-0.4.2/inlmisc/man/ExtractAlongTransect.Rd | 24 - inlmisc-0.4.2/inlmisc/man/GetTolColors.Rd | 39 + inlmisc-0.4.2/inlmisc/man/Grid2Polygons.Rd | 5 inlmisc-0.4.2/inlmisc/man/IsPackageInstalled.Rd | 2 inlmisc-0.4.2/inlmisc/man/PlotCrossSection.Rd | 7 inlmisc-0.4.2/inlmisc/man/PlotGraph.Rd | 26 - inlmisc-0.4.2/inlmisc/man/PlotMap.Rd | 51 +- inlmisc-0.4.2/inlmisc/man/PrintFigure.Rd |only inlmisc-0.4.2/inlmisc/man/SetPolygons.Rd | 7 inlmisc-0.4.2/inlmisc/tests/testthat/test.R | 11 44 files changed, 853 insertions(+), 568 deletions(-)
Title: Package for Community Ecology and Suitability Analysis
Description: Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
Author: Roeland Kindt
Maintainer: Roeland Kindt <R.KINDT@CGIAR.ORG>
Diff between BiodiversityR versions 2.9-2 dated 2018-02-28 and 2.10-1 dated 2018-07-14
DESCRIPTION | 14 ++-- MD5 | 31 +++++---- NAMESPACE | 2 R/BiodiversityR.changeLog.R |only R/BiodiversityRGUI.R | 4 - R/dist.eval.R | 2 R/ensemble.VIF.R | 9 +- R/ensemble.chull.R |only R/ensemble.pairs.R | 16 +++- R/ensemble.red.R |only R/zzz.R | 5 - inst/ChangeLog | 49 ++++++++++++++ inst/etc/BiodiversityGUI.R | 138 +++++++++++++++++++++++++++++++++++------ inst/etc/Rcmdr-menus.txt | 9 +- man/BiodiversityR.changeLog.Rd |only man/BiodiversityRGUI.Rd | 3 man/dist.eval.Rd | 2 man/ensemble.Rd | 8 ++ man/ensemble.red.Rd |only 19 files changed, 233 insertions(+), 59 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-06 3.1.2.400
2015-05-04 2.4.0.900
2015-04-29 2.2.0
2014-09-21 2.1.0
2014-03-20 0.5.1
2014-03-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-29 3.2.2
2014-03-27 3.2.1
2014-03-10 3.1.1
2013-08-29 2.0.1
Title: Additional Tools for Developing Spatially Explicit Discrete
Event Simulation (SpaDES) Models
Description: Provides GIS and map utilities, plus additional modeling tools for
developing cellular automata, dynamic raster models, and agent based models
in 'SpaDES'.
Included are various methods for spatial spreading, spatial agents, GIS
operations, random map generation, and others.
See '?SpaDES.tools' for an categorized overview of these additional tools.
Author: Alex M Chubaty [aut, cre],
Eliot J B McIntire [aut],
Yong Luo [ctb],
Steve Cumming [ctb],
Jean Marchal [ctb],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alex.chubaty@gmail.com>
Diff between SpaDES.tools versions 0.2.0 dated 2018-06-18 and 0.3.0 dated 2018-07-14
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 3 --- NEWS.md | 9 +++++++++ R/spades-tools-deprecated.R | 26 -------------------------- R/splitRaster.R | 25 +++++++++++++++---------- man/deprecated.Rd | 16 +++------------- man/splitRaster.Rd | 9 ++++----- tests/testthat/test-examples.R | 20 +++++++++++--------- tests/testthat/test-splitRaster.R | 20 +++++++++++++++----- 10 files changed, 70 insertions(+), 84 deletions(-)
Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals,
prime number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme <rb-gmp@reflex-studio.de>,
Sylvain Jasson <jasson@toulouse.inra.fr>,
Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between gmp versions 0.5-13.1 dated 2017-03-12 and 0.5-13.2 dated 2018-07-14
DESCRIPTION | 9 ++++----- MD5 | 6 +++--- src/extract_matrix.h | 4 ++-- tests/gmp-test.Rout.save | 16 ++++++++-------- 4 files changed, 17 insertions(+), 18 deletions(-)
Title: A Tool for Automating Download and Preprocessing of MODIS Land
Products Data
Description: Allows automating the creation of time series of rasters derived
from MODIS Satellite Land Products data. It performs several typical
preprocessing steps such as download, mosaicking, reprojection and resize
of data acquired on a specified time period. All processing parameters
can be set using a user-friendly GUI. Users can select which layers of
the original MODIS HDF files they want to process, which additional
Quality Indicators should be extracted from aggregated MODIS Quality
Assurance layers and, in the case of Surface Reflectance products
, which Spectral Indexes should be computed from the original reflectance
bands. For each output layer, outputs are saved as single-band raster
files corresponding to each available acquisition date. Virtual files
allowing access to the entire time series as a single file are also created.
Command-line execution exploiting a previously saved processing options
file is also possible, allowing to automatically update time series
related to a MODIS product whenever a new image is available.
Author: Lorenzo Busetto [aut, cre] (<https://orcid.org/0000-0001-9634-6038>),
Luigi Ranghetti [aut]
Maintainer: Lorenzo Busetto <lbusett@gmail.com>
Diff between MODIStsp versions 1.3.5 dated 2018-06-24 and 1.3.6 dated 2018-07-14
DESCRIPTION | 6 MD5 | 241 NAMESPACE | 240 NEWS.md | 763 R/MODIStsp-package.R | 52 R/MODIStsp.R | 1134 - R/MODIStsp_GUI.R | 2669 +- R/MODIStsp_addindex.R | 1020 - R/MODIStsp_download.R | 454 R/MODIStsp_extract.R | 816 R/MODIStsp_install_launcher.R | 360 R/MODIStsp_process.R | 1242 - R/MODIStsp_process_QA_bits.R | 158 R/MODIStsp_process_bands.R | 1076 - R/MODIStsp_process_indexes.R | 274 R/MODIStsp_read_xml.R | 400 R/MODIStsp_reset_options.R | 60 R/MODIStsp_resetindexes.R | 137 R/MODIStsp_vrt_create.R | 586 R/ask_permission.R | 76 R/bbox_from_file.R | 92 R/check_files_existance.R | 198 R/check_formula_errors.R | 204 R/check_proj4string.R | 286 R/create_help_messages.R | 482 R/get_mod_dates.R | 70 R/get_mod_dirs.R | 234 R/get_mod_filenames.R | 276 R/get_reqbands.R | 146 R/get_yeardates.R | 168 R/gh_changeproj.R | 236 R/gh_help.R | 70 R/gh_load_extent.R | 144 R/gh_selcat.R | 134 R/gh_selectmap.R | 230 R/gh_sellayers.R | 484 R/gh_selprod.R | 164 R/gh_tiles_from_bbox.R | 68 R/gh_view_extent.R | 148 R/gui_helpers.R | 1199 - R/load_opts.R | 212 R/load_prodopts.R | 142 R/process_message.R | 44 R/reproj_bbox.R | 96 R/set_bandind_matrix.R | 108 R/split_nodata_values.R | 214 README.md | 810 build/vignette.rds |binary inst/CITATION | 38 inst/ExtData/Diff_Prodopts_131_132.xml |17860 +++++++++---------- inst/ExtData/Launcher/Bash/MODIStsp.sh | 92 inst/ExtData/Launcher/Batch/MODIStsp.bat | 102 inst/ExtData/Launcher/MODIStsp_launcher.R | 114 inst/ExtData/MODIStsp_ProdOpts.xml |23612 +++++++++++++------------- inst/ExtData/Previous/MODIStsp_Previous.json | 163 inst/ExtData/Previous/MODIStsp_ProdOpts.RData |binary inst/WORDLIST | 448 inst/doc/MODIStsp.R | 332 inst/doc/MODIStsp.Rmd | 1894 +- inst/doc/MODIStsp.pdf |binary inst/testdata/MODIStsp_2017-12-17.json | 74 inst/testdata/extract_polys.qpj | 2 inst/testdata/test01.json | 74 inst/testdata/test02.json | 74 inst/testdata/test03.json | 92 inst/testdata/test04.json | 74 inst/testdata/test04_aqua.json |only inst/testdata/test05.json | 78 inst/testdata/test05_wrong_pwd.json | 78 inst/testdata/test06.json | 74 inst/testdata/test07.json | 74 inst/testdata/test08.json | 92 inst/testdata/test_MOD10A2.json | 72 inst/testdata/test_MOD13A2.json | 72 inst/testdata/test_addindex.json | 74 inst/testdata/test_extract.json | 72 inst/testdata/wrong_json.json | 8 man/MODIStsp-package.Rd | 68 man/MODIStsp.Rd | 276 man/MODIStsp_GUI.Rd | 92 man/MODIStsp_addindex.Rd | 232 man/MODIStsp_download.Rd | 126 man/MODIStsp_extract.Rd | 334 man/MODIStsp_process.Rd | 436 man/MODIStsp_process_QA_bits.Rd | 102 man/MODIStsp_process_bands.Rd | 196 man/MODIStsp_process_indexes.Rd | 124 man/MODIStsp_read_xml.Rd | 68 man/MODIStsp_reset_options.Rd | 50 man/MODIStsp_resetindexes.Rd | 116 man/MODIStsp_vrt_create.Rd | 148 man/ask_permission.Rd | 28 man/bbox_from_file.Rd | 48 man/check_files_existence.Rd | 114 man/check_proj4string.Rd | 132 man/get_mod_dates.Rd | 62 man/get_mod_dirs.Rd | 110 man/get_mod_filenames.Rd | 122 man/get_reqbands.Rd | 114 man/get_yeardates.Rd | 76 man/install_MODIStsp_launcher.Rd | 158 man/load_opts.Rd | 64 man/load_prodopts.Rd | 48 man/process_message.Rd | 56 man/reproj_bbox.Rd | 64 man/set_bandind_matrix.Rd | 94 man/split_nodata_values.Rd | 154 tests/spelling.R | 2 tests/testthat.R | 6 tests/testthat/test-split_nodata_values.R | 30 tests/testthat/test_MODIStsp.R | 704 tests/testthat/test_MODIStsp_addindex.R | 150 tests/testthat/test_MODIStsp_extract.R | 244 tests/testthat/test_MODIStsp_readxml.R | 44 tests/testthat/test_MODIStsp_resetindexes.R | 50 tests/testthat/test_bbox_from_file.R | 72 tests/testthat/test_check_proj4string.R | 70 tests/testthat/test_create_help_messages.R | 14 tests/testthat/test_get_yeardates.R | 204 tests/testthat/test_modistspGUI.R | 26 vignettes/MODIStsp.Rmd | 1894 +- vignettes/MODIStsp.bib | 1054 - 122 files changed, 36334 insertions(+), 36204 deletions(-)
Title: Econometric Models for Spatial Panel Data
Description: ML and GM estimation and diagnostic testing of econometric models for spatial panel data.
Author: Giovanni Millo [aut, cre],
Gianfranco Piras [aut]
Maintainer: Giovanni Millo <giovanni.millo@generali.com>
Diff between splm versions 1.4-10 dated 2017-11-06 and 1.4-11 dated 2018-07-14
ChangeLog | 3 +++ DESCRIPTION | 15 +++++++++------ MD5 | 16 ++++++++-------- R/likelihoodsFE.R | 49 +++++++++++++++++++++++++++++++++++-------------- data/Insurance.rda |binary data/RiceFarms.rda |binary data/itaww.rda |binary data/riceww.rda |binary data/usaww.rda |binary 9 files changed, 55 insertions(+), 28 deletions(-)
Title: Fits a Principal Curve in Arbitrary Dimension
Description: Fitting a principal curve to a data matrix in arbitrary dimensions.
Author: Trevor Hastie [aut],
Andreas Weingessel [aut],
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>),
Henrik Bengtsson [ctb] (HenrikBengtsson),
Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>,
rcannood)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between princurve versions 2.0.4 dated 2018-07-09 and 2.1.0 dated 2018-07-14
princurve-2.0.4/princurve/R/adjust_range.R |only princurve-2.1.0/princurve/DESCRIPTION | 13 princurve-2.1.0/princurve/MD5 | 30 +- princurve-2.1.0/princurve/NAMESPACE | 1 princurve-2.1.0/princurve/R/package.R | 2 princurve-2.1.0/princurve/R/principal_curve.R | 96 +++---- princurve-2.1.0/princurve/R/smoother_functions.R |only princurve-2.1.0/princurve/R/start_circle.R | 36 +- princurve-2.1.0/princurve/README.md | 22 - princurve-2.1.0/princurve/inst/NEWS | 31 ++ princurve-2.1.0/princurve/man/principal_curve.Rd | 7 princurve-2.1.0/princurve/man/smoother_functions.Rd |only princurve-2.1.0/princurve/man/start_circle.Rd |only princurve-2.1.0/princurve/src/project_to_curve.cpp | 137 ++++++---- princurve-2.1.0/princurve/tests/testthat/test-legacy_princurve.R | 46 +++ princurve-2.1.0/princurve/tests/testthat/test-principal_curve.R | 36 ++ princurve-2.1.0/princurve/tests/testthat/test-project_to_curve.R | 17 + princurve-2.1.0/princurve/tests/testthat/test-smoother_functions.R |only princurve-2.1.0/princurve/tests/testthat/test-start_circle.R |only 19 files changed, 338 insertions(+), 136 deletions(-)
Title: Iterative Solvers for (Sparse) Linear System of Equations
Description: Solving a system of linear equations is one of the most fundamental
computational problems for many fields of mathematical studies, such as
regression problems from statistics or numerical partial differential equations.
We provide basic stationary iterative solvers such as Jacobi, Gauss-Seidel,
Successive Over-Relaxation and SSOR methods. Nonstationary, also known as
Krylov subspace methods are also provided. Sparse matrix computation is also supported
in that solving large and sparse linear systems can be manageable using 'Matrix' package
along with 'RcppArmadillo'. For a more detailed description, see a book by Saad (2003)
<doi:10.1137/1.9780898718003>.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyou@nd.edu>
Diff between Rlinsolve versions 0.2.0 dated 2018-02-12 and 0.3.0 dated 2018-07-14
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- R/lsolve_BICG.R | 9 +++++++-- R/lsolve_BICGSTAB.R | 8 ++++++-- R/lsolve_CG.R | 8 ++++++-- R/lsolve_CGS.R | 8 ++++++-- R/lsolve_CHEBY.R | 8 ++++++-- R/lsolve_GMRES.R | 9 +++++++-- R/lsolve_GS.R | 10 ++++++++-- R/lsolve_JACOBI.R | 10 +++++++--- R/lsolve_QMR.R | 8 ++++++-- R/lsolve_SOR.R | 12 +++++++++--- R/lsolve_SSOR.R | 10 +++++++--- R/package-Rlinsolve.R | 4 +--- build/partial.rdb |binary man/Rlinsolve.Rd | 4 +--- 16 files changed, 96 insertions(+), 50 deletions(-)
Title: Directly Extracts Complete CANSIM Data Tables
Description: Extract CANSIM (Statistics Canada) tables and transform them into readily usable data in panel (wide) format. It can also extract more than one table at a time and produce the resulting merge by time period and geographical region.
Author: Marco Lugo <marco.lugo.rodriguez@umontreal.ca>
Maintainer: Marco Lugo <marco.lugo.rodriguez@umontreal.ca>
Diff between CANSIM2R versions 1.12.0 dated 2018-06-25 and 1.12.1 dated 2018-07-14
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/downloadCANSIM.r | 16 ---------------- R/getCANSIM.r | 5 ++--- man/getCANSIM.Rd | 6 ++---- 5 files changed, 12 insertions(+), 31 deletions(-)