Sun, 22 Jul 2018

New package sundialr with initial version 0.1.1
Package: sundialr
Type: Package
Title: An Interface to 'SUNDIALS' Ordinary Differential Equation (ODE) Solvers
Version: 0.1.1
Authors@R: c( person("Satyaprakash", "Nayak", "", "sn248@cornell.edu", c("aut", "cre")), person("Scott D", "Cohen", "", "", c("ctb")), person("Alan C", "Hindmarsh", "", "", c("ctb")), person("Radu", "Serban", "", "", c("ctb")), person("Dan", "Shumaker", "", "", c("ctb")), person("Daniel R", "Reynolds", "", "", c("ctb")), person("Aaron", "Collier", "", "", c("ctb")), person("David", "Gardner", "", "", c("ctb")), person("Carol", "Woodward", "", "", c("ctb")), person("Slaven", "Peles", "", "", c("ctb")), person("Peter", "Brown", "", "", c("ctb")), person("Hilari C", "Tiedeman", "", "", c("ctb")), person("Ting", "Yan", "", "", c("ctb")), person("Lawrence Livermore National Security", role = c("cph")), person("Southern Methodist University", role = c("cph")) )
Maintainer: Satyaprakash Nayak <sn248@cornell.edu>
URL: https://github.com/sn248/sundialr
BugReports: https://github.com/sn248/sundialr/issues
Description: Provides a way to call the functions in 'SUNDIALS' C ODE solving library (<https://computation.llnl.gov/projects/sundials>). Currently the serial version of ODE solver, 'CVODE' from the library can be accessed. The package requires ODE to be written using 'Rcpp' and does not require the libraries to be installed on the system.
License: GPL (>= 2)
LazyData: TRUE
Imports: Rcpp (>= 0.12.5)
LinkingTo: Rcpp
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2018-07-22 15:42:39 UTC; nayaks16
Author: Satyaprakash Nayak [aut, cre], Scott D Cohen [ctb], Alan C Hindmarsh [ctb], Radu Serban [ctb], Dan Shumaker [ctb], Daniel R Reynolds [ctb], Aaron Collier [ctb], David Gardner [ctb], Carol Woodward [ctb], Slaven Peles [ctb], Peter Brown [ctb], Hilari C Tiedeman [ctb], Ting Yan [ctb], Lawrence Livermore National Security [cph], Southern Methodist University [cph]
Repository: CRAN
Date/Publication: 2018-07-22 21:10:03 UTC

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New package ps with initial version 1.0.0
Package: ps
Version: 1.0.0
Title: List, Query, Manipulate System Processes
Description: List, query and manipulate all system processes, on 'Windows', 'Linux' and 'macOS'.
Authors@R: c( person("Jay", "Loden", role = "aut"), person("Dave", "Daeschler", role = "aut"), person("Giampaolo", "Rodola'", role = "aut"), person("Gábor", "Csárdi", , "csardi.gabor@gmail.com", c("aut", "cre")), person("RStudio", role = "cph"))
License: BSD_3_clause + file LICENSE
URL: https://github.com/r-lib/ps#readme
BugReports: https://github.com/r-lib/ps/issues
Encoding: UTF-8
Depends: R (>= 3.1)
Imports: utils
Suggests: callr, covr, processx, testthat, tibble
RoxygenNote: 6.0.1
Biarch: true
NeedsCompilation: yes
Packaged: 2018-07-22 11:04:14 UTC; gaborcsardi
Author: Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], RStudio [cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Repository: CRAN
Date/Publication: 2018-07-22 21:10:07 UTC

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New package fpeek with initial version 0.1.0
Package: fpeek
Type: Package
Title: Check Text Files Content at a Glance
Version: 0.1.0
Authors@R: c( person("David", "Gohel", role = c("aut", "cre"), email = "david.gohel@ardata.fr"))
Description: Tools to help text files importation. It can return the number of lines; print the first and last lines; convert encoding. Operations are made without reading the entire file before starting, resulting in good performances with large files. This package provides an alternative to a simple use of the 'head', 'tail', 'wc' and 'iconv' programs that are not always available on machine where R is installed.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: Rcpp (>= 0.12.12)
LinkingTo: Rcpp
RoxygenNote: 6.0.1.9000
Suggests: testthat, covr
NeedsCompilation: yes
Packaged: 2018-07-18 21:25:20 UTC; davidgohel
Author: David Gohel [aut, cre]
Maintainer: David Gohel <david.gohel@ardata.fr>
Repository: CRAN
Date/Publication: 2018-07-22 21:10:09 UTC

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Package support updated to version 0.1.2 with previous version 0.1.1 dated 2018-04-24

Title: Support Points
Description: Provides the function sp() for generating the support points proposed in Mak and Joseph (2017) <arXiv:1609.01811>. Support points are representative points of a possibly non-uniform distribution, and can be used as optimal sampling or integration points for a distribution of choice. The provided function sp() can be used to generate support points for standard distributions or for reducing big data (e.g., from Markov-chain Monte Carlo methods). This work was supported by USARO grant W911NF-14-1-0024 and NSF DMS grant 1712642.
Author: Simon Mak
Maintainer: Simon Mak <smak6@gatech.edu>

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Package NlinTS updated to version 1.3.4 with previous version 1.3.3 dated 2018-07-18

Title: Non Linear Time Series Analysis
Description: Models for time series forecasting and causality detection. The main functionalities of this package consist of a neural network Vector Auto-Regressive model, the classical Granger causality test C.W.J.Granger (1980) <doi:10.1016/0165-1889(80)90069-X>, and a non-linear version of it based on feedforward neural networks.
Author: Youssef Hmamouche [aut, cre], Sylvain Barthelemy [cph]
Maintainer: Youssef Hmamouche <hmamoucheyussef@gmail.com>

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Package forecastHybrid updated to version 3.0.14 with previous version 2.2.12 dated 2018-05-06

Title: Convenient Functions for Ensemble Time Series Forecasts
Description: Convenient functions for ensemble forecasts in R combining approaches from the 'forecast' package. Forecasts generated from auto.arima(), ets(), thetam(), nnetar(), stlm(), and tbats() can be combined with equal weights, weights based on in-sample errors (introduced by Bates & Granger (1969) <doi:10.1057/jors.1969.103>), or cross-validated weights. Cross validation for time series data with user-supplied models and forecasting functions is also supported to evaluate model accuracy.
Author: David Shaub [aut, cre], Peter Ellis [aut]
Maintainer: David Shaub <davidshaub@gmx.com>

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Package eurostat updated to version 3.2.2 with previous version 3.2.1 dated 2018-05-20

Title: Tools for Eurostat Open Data
Description: Tools to download data from the Eurostat database <http://ec.europa.eu/eurostat> together with search and manipulation utilities.
Author: Leo Lahti [aut, cre], Janne Huovari [aut], Markus Kainu [aut], Przemyslaw Biecek [aut], Joona Lehtomaki [ctb], Francois Briatte [ctb], Oliver Reiter [ctb]
Maintainer: Leo Lahti <leo.lahti@iki.fi>

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Package distrEx updated to version 2.7.0 with previous version 2.6.1 dated 2017-04-23

Title: Extensions of Package 'distr'
Description: Extends package 'distr' by functionals, distances, and conditional distributions.
Author: Matthias Kohl [cre, cph], Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>

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Package CANSIM2R updated to version 1.13.0 with previous version 1.12.1 dated 2018-07-14

Title: Directly Extracts Complete CANSIM Data Tables / Extrait Des Tableaux CANSIM Directement
Description: Extract CANSIM (Statistics Canada) tables and transform them into readily usable data in panel (wide) format. It can also extract more than one table at a time and produce the resulting merge by time period and geographical region.
Author: Marco Lugo <marco.lugo.rodriguez@umontreal.ca>
Maintainer: Marco Lugo <marco.lugo.rodriguez@umontreal.ca>

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Package BigVAR updated to version 1.0.3 with previous version 1.0.2 dated 2017-04-03

Title: Dimension Reduction Methods for Multivariate Time Series
Description: Estimates VAR and VARX models with structured Lasso Penalties.
Author: c( person("Will", "Nicholson", email = "wbn8@cornell.edu", role = c("cre","aut")), person("David", "Matteson", email = "matteson@cornell.edu", role = "aut"), person("Jacob", "Bien", email = "bien@cornell.edu", role = "aut"))
Maintainer: Will Nicholson <wbn8@cornell.edu>

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Package survutils updated to version 1.0.2 with previous version 1.0.1 dated 2018-02-10

Title: Utility Functions for Survival Analysis
Description: Functional programming principles to iteratively run Cox regression and plot its results. The results are reported in tidy data frames. Additional utility functions are available for working with other aspects of survival analysis such as survival curves, C-statistics, etc.
Author: Fong Chun Chan [aut, cre]
Maintainer: Fong Chun Chan <fongchunchan@gmail.com>

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Package imagerExtra updated to version 1.2.0 with previous version 1.1.1 dated 2018-07-02

Title: Extra Image Processing Library Based on 'imager'
Description: Providing several advanced functions for image processing based on the package 'imager'.
Author: Shota Ochi [aut, cre], Guoshen Yu [ctb, cph], Guillermo Sapiro [ctb, cph], Catalina Sbert [ctb, cph], Image Processing On Line [cph]
Maintainer: Shota Ochi <shotaochi1990@gmail.com>

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Package ztable updated to version 0.2.0 with previous version 0.1.8 dated 2018-04-25

Title: Zebra-Striped Tables in LaTeX and HTML Formats
Description: Makes zebra-striped tables (tables with alternating row colors) in LaTeX and HTML formats easily from a data.frame, matrix, lm, aov, anova, glm, coxph, nls, fitdistr, mytable and cbind.mytable objects.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>

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 48 files changed, 1966 insertions(+), 9037 deletions(-)

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New package NormalBetaPrime with initial version 1.0
Package: NormalBetaPrime
Type: Package
Title: Normal Beta Prime Prior
Version: 1.0
Date: 2018-07-12
Author: Ray Bai, Malay Ghosh
Maintainer: Ray Bai <raybai07@ufl.edu>
Description: Implements Bayesian linear regression, variable selection, normal means estimation, and multiple hypothesis testing using the normal-beta prime prior, as introduced by Bai and Ghosh (2018) <arXiv:1807.02421> and Bai and Ghosh (2018) <arXiv:1807.06539>. Normal means estimation and multiple testing for the Dirichlet-Laplace <doi:10.1080/01621459.2014.960967> and horseshoe+ priors <doi:10.1214/16-BA1028> are also available in this package.
License: GPL-3
LazyData: true
Depends: R (>= 3.1.0)
Imports: stats, utils, Matrix, MASS, glmnet, pscl, GIGrvg, pracma
NeedsCompilation: yes
Repository: CRAN
Packaged: 2018-07-22 13:58:15 UTC; rayba
Date/Publication: 2018-07-22 15:10:03 UTC

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Package MSbox updated to version 1.1.1 with previous version 1.1 dated 2018-03-16

Title: Mass Spectrometry Tools
Description: Common mass spectrometry tools described in John Roboz (2013) <doi:10.1201/b15436>. It allows checking element isotopes, calculating (isotope labelled) exact monoisitopic mass, m/z values and mass accuracy, and inspecting possible contaminant mass peaks, examining possible adducts in electrospray ionization (ESI) and matrix-assisted laser desorption ionization (MALDI) ion sources.
Author: Yonghui Dong
Maintainer: Yonghui Dong <yonghui.dong@gmail.com>

Diff between MSbox versions 1.1 dated 2018-03-16 and 1.1.1 dated 2018-07-22

 DESCRIPTION     |    8 ++++----
 MD5             |   10 ++++++----
 NAMESPACE       |    4 ++++
 R/get_formula.R |only
 R/ppm.R         |    3 ++-
 README.md       |   26 +++++++++++++++++---------
 man/formula.Rd  |only
 7 files changed, 33 insertions(+), 18 deletions(-)

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New package eplusr with initial version 0.8.2
Package: eplusr
Title: A Toolkit for Using Whole Building Simulation Program 'EnergyPlus'
Version: 0.8.2
Authors@R: person(given = "Hongyuan", family = "Jia", role = c("aut", "cre"), email = "hongyuanjia@cqu.edu.cn", comment = c(ORCID = "0000-0002-0075-8183"))
Description: A rich toolkit of using the whole building simulation program 'EnergyPlus', which enables programmatic navigation, modification of 'EnergyPlus' models and makes it less painful to do parametric simulations and analysis.
License: GPL-3
URL: https://hongyuanjia.github.io/eplusr
BugReports: https://github.com/hongyuanjia/eplusr/issues
Depends: R (>= 3.2.0)
Imports: R6, RSQLite, assertthat, cli, clisymbols, data.table (>= 1.9.8), fasttime, furrr, future, gh, lubridate, processx, progress, purrr, readr, stringr, units, uuid
Suggests: testthat, covr
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Collate: 'constants.R' 'utils.R' 'units.R' 'assertions.R' 'impl.R' 'parse.R' 'epw.R' 'idd.R' 'idd_object.R' 'idf.R' 'idf_object.R' 'validate.R' 'format.R' 'run.R' 'job.R' 'param.R' 'install.R' 'eplusr.R' 'zzz.R'
NeedsCompilation: no
Packaged: 2018-07-22 02:43:40 UTC; hongy
Author: Hongyuan Jia [aut, cre] (<https://orcid.org/0000-0002-0075-8183>)
Maintainer: Hongyuan Jia <hongyuanjia@cqu.edu.cn>
Repository: CRAN
Date/Publication: 2018-07-22 15:20:03 UTC

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New package envnames with initial version 0.3.0
Package: envnames
Type: Package
Title: Track User-Defined Environment Names
Version: 0.3.0
Date: 2018-07-15
Author: Daniel Mastropietro
Maintainer: Daniel Mastropietro <mastropi@uwalumni.com>
Description: Set of functions to keep track of user-defined environment names which cannot be retrieved with the built-in function environmentName. The main function in this package for this purpose has a similar name: environment_name(), which returns the name of the environment given as parameter, be it a system, package, user-defined, or function execution environment. The package also provides additional functionality, the most important ones being: - A function (obj_find()) to search for objects. This function extends the functionality of exists() as follows: objects are searched recursively within all user-defined environments. - A way to get the stack of calling function names (get_fun_calling_chain()), in an easier way than the built-in function sys.call(), which requires further non-intuitive parsing of the output. - A function (get_obj_address()) to retrieve the memory address of an object. This package was inspired by an "R for developers" course given by Andrea Spano from Quantide (<http://www.quantide.com/courses-overview/r-for-developers>) and by a post by Gabor Grothendieck at the R-Help forum (<https://stat.ethz.ch/pipermail/r-help/2010-July/245646.html>).
URL: https://github.com/mastropi/envnames
BugReports: https://github.com/mastropi/envnames/issues
License: GPL
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2018-07-20 14:53:50 UTC; lundinmatlab
Repository: CRAN
Date/Publication: 2018-07-22 15:30:03 UTC

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New package CAinterprTools with initial version 1.0.0
Package: CAinterprTools
Title: Graphical Aid in Correspondence Analysis Interpretation and Significance Testings
Version: 1.0.0
Authors@R: person("Gianmarco", "Alberti", email = "gianmarcoalberti@gmail.com", role = c("aut", "cre"))
Description: Allows to plot a number of information related to the interpretation of Correspondence Analysis' results. It provides the facility to plot the contribution of rows and columns categories to the principal dimensions, the quality of points display on selected dimensions, the correlation of row and column categories to selected dimensions, etc. It also allows to assess which dimension(s) is important for the data structure interpretation by means of different statistics and tests. The package also offers the facility to plot the permuted distribution of the table total inertia as well as of the inertia accounted for by pairs of selected dimensions. Different facilities are also provided that aim to produce interpretation-oriented scatterplots. Reference: <doi:10.1016/j.softx.2015.07.001>.
Depends: R (>= 3.1.0)
Imports: ca (>= 0.70), classInt (>= 0.2-3), cluster (>= 2.0.7), FactoMineR (>= 1.40), ggplot2 (>= 3.0.0), ggrepel (>= 0.8.0), graphics (>= 3.4.3), Hmisc (>= 4.1-1), RcmdrMisc (>= 1.0), reshape2 (>= 1.4.3), stats (>= 3.4.3), utils (>= 3.4.3)
License: GPL
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-07-22 06:36:49 UTC; gianmarcoalberti
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Repository: CRAN
Date/Publication: 2018-07-22 15:10:06 UTC

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New package MSMwRA with initial version 1.2
Package: MSMwRA
Type: Package
Title: Multivariate Statistical Methods with R Applications
Version: 1.2
Date: 2018-07-17
Author: Hasan BULUT
Maintainer: Hasan BULUT <hasan.bulut@omu.edu.tr>
Description: Data sets in the book entitled "Multivariate Statistical Methods with R Applications", H.Bulut (2018). The book will be published in Turkish and the original name of this book be "R Uygulamalari ile Cok Degiskenli Istatistiksel Yontemler".
LazyData: true
License: GPL-3
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-07-21 18:54:24 UTC; TOSHIBA
Repository: CRAN
Date/Publication: 2018-07-22 14:50:02 UTC

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New package movecost with initial version 0.1
Package: movecost
Title: Calculation of Accumulated Cost Surface and Least-Cost Paths Related to Human Movement Across the Landscape
Version: 0.1
Authors@R: person("Gianmarco", "Alberti", email = "gianmarcoalberti@gmail.com", role = c("aut", "cre"))
Description: Provides the facility to calculate accumulated cost surface and least-cost paths using a number of human-movement-related cost functions that can be selected by the user. It just requires a Digital Terrain model, a start location and (optionally) destination locations.
Depends: R (>= 3.4.0)
Imports: gdistance (>= 1.2-2), raster (>= 2.6-7), rgdal (>= 1.3-3), rgeos (>= 0.3-28), sp (>= 1.3-1)
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-07-20 22:29:15 UTC; gianmarcoalberti
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Repository: CRAN
Date/Publication: 2018-07-22 14:30:03 UTC

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Package ggiraphExtra updated to version 0.2.9 with previous version 0.1.0 dated 2016-12-02

Title: Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph'
Description: Collection of functions to enhance 'ggplot2' and 'ggiraph'. Provides functions for exploratory plots. All plot can be a 'static' plot or an 'interactive' plot using 'ggiraph'.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>

Diff between ggiraphExtra versions 0.1.0 dated 2016-12-02 and 0.2.9 dated 2018-07-22

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 ggiraphExtra-0.2.9/ggiraphExtra/NAMESPACE                  |   62 +
 ggiraphExtra-0.2.9/ggiraphExtra/NEWS                       |  114 +
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 ggiraphExtra-0.2.9/ggiraphExtra/R/ggBoxplot.R              |   74 +
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 ggiraphExtra-0.2.9/ggiraphExtra/R/ggCatepillar.R           |   74 +
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggChoropleth.R           |   43 
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggCor.R                  |  120 +-
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggDensity.R              |only
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggDot.R                  |  126 +-
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggEffect.R               |  357 +++---
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggErrorBar.R             |   55 
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggHeatmap.R              |   93 +
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggPair.R                 |  261 +++-
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggPieDonut.R             |  489 ++++++--
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggPoints.R               |  187 ++-
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggPredict.R              |only
 ggiraphExtra-0.2.9/ggiraphExtra/R/ggRadar.R                |  174 ++-
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New package dsr with initial version 0.1.0
Package: dsr
Type: Package
Title: Compute Directly Standardized Rates, Ratios and Differences
Version: 0.1.0
Author: Matthew Kumar <mattkumar@gmail.com>
Maintainer: Matthew Kumar <mattkumar@gmail.com>
Description: A set of functions to compute and compare directly standardized rates, rate differences and ratios. A variety of user defined options for analysis (e.g confidence intervals) and formatting are included.
Imports: stats, dplyr (>= 0.7.4) , rlang, utils
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-07-20 20:04:40 UTC; Kumar
Repository: CRAN
Date/Publication: 2018-07-22 14:20:07 UTC

More information about dsr at CRAN
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New package rbit with initial version 1.0.0
Package: rbit
Title: Binary Indexed Tree
Version: 1.0.0
Author: Jialun Zhang, Zhilan Fan, Hang Zhang
Maintainer: Jialun Zhang <reatank@foxmail.com>
Description: A simple implementation of Binary Indexed Tree by R. The BinaryIndexedTree class supports construction of Binary Indexed Tree from a vector, update of a value in the vector and query for the sum of a interval of the vector.
License: MIT + file LICENSE
LazyData: true
Imports: R6
Encoding: UTF-8
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-07-20 08:38:26 UTC; Konata
Repository: CRAN
Date/Publication: 2018-07-22 13:50:03 UTC

More information about rbit at CRAN
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New package BRISC with initial version 0.1.0
Package: BRISC
Type: Package
Title: Fast Inference for Large Spatial Datasets using BRISC
Version: 0.1.0
Authors@R: c(person("Arkajyoti", "Saha", role=c("aut", "cre"), email="arkajyotisaha93@gmail.com"), person("Abhirup", "Datta", role="aut", email="abhidatta@jhu.edu"), person("Jorge", "Nocedal", role="ctb", email="j-nocedal@northwestern.edu"), person("Naoaki", "Okazaki", role="ctb", email="okazaki@c.titech.ac.jp"))
Maintainer: Arkajyoti Saha <arkajyotisaha93@gmail.com>
Author: Arkajyoti Saha [aut, cre], Abhirup Datta [aut], Jorge Nocedal [ctb], Naoaki Okazaki [ctb]
Depends: R (>= 3.3.0), RANN, parallel, stats, rdist, matrixStats, pbapply
Description: Fits Bootstrap with univariate spatial regression models using Bootstrap for Rapid Inference on Spatial Covariances (BRISC) for large datasets using Nearest Neighbor Gaussian Processes detailed in Saha and Datta (2018) <doi:10.1002/sta4.184>.
License: GPL (>= 2)
URL: https://github.com/ArkajyotiSaha/BRISC
BugReports: https://github.com/ArkajyotiSaha/BRISC/issues
Encoding: UTF-8
NeedsCompilation: yes
RoxygenNote: 6.0.1
Packaged: 2018-07-20 17:16:35 UTC; arkajyotisaha
Repository: CRAN
Date/Publication: 2018-07-22 14:00:02 UTC

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Package STPGA updated to version 5.0 with previous version 4.0 dated 2017-03-02

Title: Selection of Training Populations by Genetic Algorithm
Description: To be utilized to select a test data calibrated training population in high dimensional prediction problems and assumes that the explanatory variables are observed for all of the individuals. Once a "good" training set is identified, the response variable can be obtained only for this set to build a model for predicting the response in the test set. The algorithms in the package can be tweaked to solve some other subset selection problems.
Author: Deniz Akdemir
Maintainer: Deniz Akdemir <deniz.akdemir.work@gmail.com>

Diff between STPGA versions 4.0 dated 2017-03-02 and 5.0 dated 2018-07-22

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 STPGA-5.0/STPGA/DESCRIPTION                           |   11 +--
 STPGA-5.0/STPGA/MD5                                   |   43 +++--------
 STPGA-5.0/STPGA/NAMESPACE                             |    3 
 STPGA-5.0/STPGA/R/Amatinpieces.R                      |only
 STPGA-5.0/STPGA/R/GenAlgForSubsetSelection.R          |   27 ++++++-
 STPGA-5.0/STPGA/R/GenAlgForSubsetSelectionNoTest.R    |   44 ++++++++----
 STPGA-5.0/STPGA/R/makeonecross.R                      |    2 
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 16 files changed, 89 insertions(+), 127 deletions(-)

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New package linkspotter with initial version 1.2.0
Package: linkspotter
Type: Package
Title: Bivariate Correlations Calculation and Visualization
Version: 1.2.0
Date: 2018-07-18
Authors@R: c( person("Alassane", "Samba", role = c("aut", "cre"),email = "alassane.samba@orange.com"), person(family="Orange", role = c("cph")) )
Description: Compute and visualize using the 'visNetwork' package all the bivariate correlations of a dataframe. Several and different types of correlation coefficients (Pearson's r, Spearman's rho, Kendall's tau, distance correlation, maximal information coefficient and equal-freq discretization-based maximal normalized mutual information) are used according to the variable couple type (quantitative vs categorical, quantitative vs quantitative, categorical vs categorical).
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.2.0)
Imports: shiny, visNetwork, infotheo, minerva, energy, mclust, rAmCharts, Hmisc, pbapply, ggplot2, dplyr, tidyr
Collate: 'linkspotterComplete.R' 'boostedBoxplot.R' 'clusterVariables.R' 'emptyVar.R' 'linkspotterDurationEstimator.R' 'linkspotterGraph.R' 'linkspotterGraphOnMatrix.R' 'linkspotterOnFile.R' 'linkspotterUI.R' 'corCouplesToMatrix.R' 'matrixToCorCouples.R' 'maxNMI.R' 'BeEFdiscretization_numfact.R' 'BeEFdiscretization_numnum.R' 'multiBivariateCorrelation.R' 'NormalizedMI.R' 'uselessVar.R' 'createShinyAppFolder.R'
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-07-19 08:15:19 UTC; XXGB1668
Author: Alassane Samba [aut, cre], Orange [cph]
Maintainer: Alassane Samba <alassane.samba@orange.com>
Repository: CRAN
Date/Publication: 2018-07-22 12:20:03 UTC

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New package jmvconnect with initial version 1.0.1
Package: jmvconnect
Type: Package
Title: Connect to the 'jamovi' Statistical Spreadsheet
Version: 1.0.1
Date: 2018-07-12
Authors@R: person('Jonathon', 'Love', role = c("aut", "cre", "cph"), email = "jon@thon.cc")
Maintainer: Jonathon Love <jon@thon.cc>
Description: Methods to access data sets from the 'jamovi' statistical spreadsheet (see <https://www.jamovi.org> for more information) from R.
License: GPL (>= 2)
Imports: jmvcore (>= 0.9.1), evaluate, rappdirs, httr, Rcpp (>= 0.12.16)
LinkingTo: Rcpp, BH
RoxygenNote: 6.0.1
SystemRequirements: jamovi, C++11
NeedsCompilation: yes
Packaged: 2018-07-19 00:17:19 UTC; jonathon
Author: Jonathon Love [aut, cre, cph]
Repository: CRAN
Date/Publication: 2018-07-22 11:50:03 UTC

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New package double.truncation with initial version 1.0
Package: double.truncation
Type: Package
Title: Analysis of Doubly-Truncated Data
Version: 1.0
Date: 2018-07-18
Author: Takeshi Emura, Hu Ya-Hsuan
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Description: Likelihood-based inference methods with doubly-truncated data are developed under various models. Parametric models from the special exponential family (SEF) are based on Hu and Emura (2015) <doi:10.1007/s00180-015-0564-z> and Emura, Hu and Konno (2017) <doi:10.1007/s00362-015-0730-y>.
License: GPL-2
NeedsCompilation: no
Packaged: 2018-07-18 08:09:01 UTC; user
Repository: CRAN
Date/Publication: 2018-07-22 11:20:02 UTC

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Package NHMSAR updated to version 1.9 with previous version 1.7 dated 2017-12-05

Title: Non-Homogeneous Markov Switching Autoregressive Models
Description: Calibration, simulation, validation of (non-)homogeneous Markov switching autoregressive models with Gaussian or von Mises innovations. Penalization methods are implemented for Markov Switching Vector Autoregressive Models of order 1 only. Most functions of the package handle missing values.
Author: Valerie Monbet
Maintainer: Valerie Monbet <valerie.monbet@gmail.com>

Diff between NHMSAR versions 1.7 dated 2017-12-05 and 1.9 dated 2018-07-22

 DESCRIPTION         |   10 +++++-----
 MD5                 |   16 ++++++++--------
 NAMESPACE           |    2 +-
 R/cor.MSAR.R        |   12 +++++++-----
 R/cross.cor.MSAR.R  |    5 ++++-
 R/cross.cor1.MSAR.R |    2 +-
 R/simule.nh.MSAR.R  |    4 ++--
 R/test.model.MSAR.R |    7 ++++++-
 man/cor.MSAR.Rd     |   17 +++++++++++------
 9 files changed, 45 insertions(+), 30 deletions(-)

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Package RGF updated to version 1.0.4 with previous version 1.0.3 dated 2018-05-10

Title: Regularized Greedy Forest
Description: Regularized Greedy Forest wrapper of the 'Regularized Greedy Forest' <https://github.com/fukatani/rgf_python> 'python' package, which also includes a Multi-core implementation (FastRGF) <https://github.com/baidu/fast_rgf>.
Author: Lampros Mouselimis [aut, cre], Ryosuke Fukatani [cph] (Author of the python wrapper of the 'Regularized Greedy Forest' machine learning algorithm), Tong Zhang [cph] (Author of the 'Regularized Greedy Forest' and of the Multi-core implementation of Regularized Greedy Forest machine learning algorithm), Rie Johnson [cph] (Author of the 'Regularized Greedy Forest' machine learning algorithm)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>

Diff between RGF versions 1.0.3 dated 2018-05-10 and 1.0.4 dated 2018-07-22

 RGF-1.0.3/RGF/inst/COPYRIGHTS               |only
 RGF-1.0.4/RGF/DESCRIPTION                   |   15 -
 RGF-1.0.4/RGF/LICENSE                       |only
 RGF-1.0.4/RGF/LICENSE.note                  |only
 RGF-1.0.4/RGF/MD5                           |   26 +-
 RGF-1.0.4/RGF/NEWS.md                       |    8 
 RGF-1.0.4/RGF/R/utils.R                     |  336 ++++++++++++++--------------
 RGF-1.0.4/RGF/README.md                     |  215 ++++++++---------
 RGF-1.0.4/RGF/inst/doc/the_RGF_package.Rmd  |   20 -
 RGF-1.0.4/RGF/inst/doc/the_RGF_package.html |   20 +
 RGF-1.0.4/RGF/man/FastRGF_Classifier.Rd     |    2 
 RGF-1.0.4/RGF/man/FastRGF_Regressor.Rd      |    2 
 RGF-1.0.4/RGF/man/Internal_class.Rd         |only
 RGF-1.0.4/RGF/man/RGF_Classifier.Rd         |   14 +
 RGF-1.0.4/RGF/man/RGF_Regressor.Rd          |   14 +
 RGF-1.0.4/RGF/vignettes/the_RGF_package.Rmd |   20 -
 16 files changed, 376 insertions(+), 316 deletions(-)

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Package sparr updated to version 2.2-12 with previous version 2.2-11 dated 2018-03-10

Title: Spatial and Spatiotemporal Relative Risk
Description: Provides functions to estimate kernel-smoothed spatial and spatio-temporal densities and relative risk functions, and perform subsequent inference. Methodological details can be found in the accompanying tutorial: Davies et al. (2018) <DOI:10.1002/sim.7577>.
Author: Tilman M. Davies [aut, cre], Jonathan C. Marshall [aut]
Maintainer: Tilman M. Davies <tdavies@maths.otago.ac.nz>

Diff between sparr versions 2.2-11 dated 2018-03-10 and 2.2-12 dated 2018-07-22

 DESCRIPTION                          |    8 ++--
 MD5                                  |   64 +++++++++++++++++------------------
 NEWS                                 |   10 +++++
 R/LSCV.density.R                     |    2 -
 R/LSCV.risk.R                        |    2 -
 R/SLIK.adapt.R                       |   21 +++++++----
 R/bivariate.density.R                |    2 -
 R/bivden.LOO.R                       |    4 +-
 R/fft.R                              |    2 -
 R/multiscale.density.R               |    2 -
 R/multiscale.slice.R                 |    2 -
 R/plot.bivden.R                      |    2 -
 R/plot.stden.R                       |    2 +
 R/spattemp.slice.R                   |    2 -
 R/tolerance.R                        |    2 -
 README.md                            |    2 -
 man/BOOT.density.Rd                  |    2 -
 man/BOOT.spattemp.Rd                 |    4 +-
 man/CV.Rd                            |    2 -
 man/LSCV.risk.Rd                     |    2 -
 man/LSCV.spattemp.Rd                 |    2 -
 man/SLIK.adapt.Rd                    |   16 +++++---
 man/bivariate.density.Rd             |    2 -
 man/fft2d.Rd                         |    2 -
 man/figures/README-pbc-example-1.png |binary
 man/multiscale.density.Rd            |    2 -
 man/multiscale.slice.Rd              |    2 -
 man/plotsparr.Rd                     |    2 -
 man/sparr-package.Rd                 |    4 +-
 man/spattemp.density.Rd              |    2 -
 man/spattemp.risk.Rd                 |    2 -
 man/spattemp.slice.Rd                |    2 -
 man/tolerance.Rd                     |    2 -
 33 files changed, 101 insertions(+), 78 deletions(-)

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