Title: An Automated Cleaning Tool for Semantic and Linguistic Data
Description: Implements several functions that automatize the cleaning, removal of plurals and continuous strings, making the data binary, converging, and finalizing of linguistic data for semantic network analysis.
Author: Alexander P. Christensen
Maintainer: Alexander P. Christensen <alexpaulchristensen@gmail.com>
Diff between SemNetCleaner versions 0.1.1 dated 2018-05-16 and 0.9.9 dated 2018-07-27
SemNetCleaner-0.1.1/SemNetCleaner/R/SemanticNetworkCleaner.R |only SemNetCleaner-0.1.1/SemNetCleaner/R/convert2cytoscape.R |only SemNetCleaner-0.1.1/SemNetCleaner/R/cosine.R |only SemNetCleaner-0.1.1/SemNetCleaner/R/org.plot.R |only SemNetCleaner-0.1.1/SemNetCleaner/R/partboot_test.R |only SemNetCleaner-0.1.1/SemNetCleaner/R/semnetmeas.R |only SemNetCleaner-0.1.1/SemNetCleaner/man/autoDeStr.Rd |only SemNetCleaner-0.1.1/SemNetCleaner/man/convert2cytoscape.Rd |only SemNetCleaner-0.1.1/SemNetCleaner/man/cosine.Rd |only SemNetCleaner-0.1.1/SemNetCleaner/man/org.plot.Rd |only SemNetCleaner-0.1.1/SemNetCleaner/man/partboot.Rd |only SemNetCleaner-0.1.1/SemNetCleaner/man/partboot.plot.Rd |only SemNetCleaner-0.1.1/SemNetCleaner/man/partboot.test.Rd |only SemNetCleaner-0.1.1/SemNetCleaner/man/semnetcleaner.Rd |only SemNetCleaner-0.1.1/SemNetCleaner/man/semnetmeas.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/DESCRIPTION | 17 -- SemNetCleaner-0.9.9/SemNetCleaner/MD5 | 84 ++++++---- SemNetCleaner-0.9.9/SemNetCleaner/NAMESPACE | 30 +-- SemNetCleaner-0.9.9/SemNetCleaner/NEWS | 26 +++ SemNetCleaner-0.9.9/SemNetCleaner/R/SemNetCleaner.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/add.let.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/animals.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/animals.database.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/animals.misnomer.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/autoConverge.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/autoDestr.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/best.guess.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/bin2resp.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/chn.let.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/converge.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/convmat.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/destr.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/equate.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/finalize.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/misnomer.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/miss.let.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/normalize.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/rmat.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/singularize.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/spell.check.database.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/spell.opt.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/splitstr.check.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/textcleaner.R |only SemNetCleaner-0.9.9/SemNetCleaner/R/trial.R |only SemNetCleaner-0.9.9/SemNetCleaner/data/animals.RData |only SemNetCleaner-0.9.9/SemNetCleaner/data/animals.database.RData |only SemNetCleaner-0.9.9/SemNetCleaner/data/animals.misnomer.RData |only SemNetCleaner-0.9.9/SemNetCleaner/inst/CITATION | 2 SemNetCleaner-0.9.9/SemNetCleaner/man/SemNetCleaner-package.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/add.let.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/animals.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/animals.database.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/animals.misnomer.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/autoConverge.Rd | 23 ++ SemNetCleaner-0.9.9/SemNetCleaner/man/autoDestr.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/best.guess.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/bin2resp.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/chn.let.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/converge.Rd | 5 SemNetCleaner-0.9.9/SemNetCleaner/man/convmat.Rd | 2 SemNetCleaner-0.9.9/SemNetCleaner/man/destr.Rd | 26 ++- SemNetCleaner-0.9.9/SemNetCleaner/man/equate.Rd | 8 SemNetCleaner-0.9.9/SemNetCleaner/man/finalize.Rd | 10 - SemNetCleaner-0.9.9/SemNetCleaner/man/misnomer.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/miss.let.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/normalize.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/rmat.Rd | 2 SemNetCleaner-0.9.9/SemNetCleaner/man/singularize.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/spell.check.database.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/spell.opt.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/splitstr.check.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/textcleaner.Rd |only SemNetCleaner-0.9.9/SemNetCleaner/man/trial.Rd | 2 73 files changed, 161 insertions(+), 76 deletions(-)
Title: Geometric Morphometric Analyses of 2D/3D Landmark Data
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
Author: Dean Adams, Michael Collyer, Antigoni Kaliontzopoulou
Maintainer: Dean Adams <dcadams@iastate.edu>
Diff between geomorph versions 3.0.6 dated 2018-04-28 and 3.0.7 dated 2018-07-27
DESCRIPTION | 10 - MD5 | 154 ++++++++++++------------ NAMESPACE | 3 NEWS | 7 + R/advanced.procD.lm.r | 254 +++++++++++++++++----------------------- R/bilat.symmetry.r | 7 - R/combine.subsets.R | 4 R/compare.evol.rates.r | 6 R/compare.multi.evol.rates.r | 8 - R/define.links.r | 1 R/define.modules.r | 1 R/define.sliders.r | 1 R/digit.fixed.r | 1 R/digitize2d.r | 1 R/digitsurface.r | 1 R/editTemplate.r | 1 R/findMeanSpec.r | 10 - R/geomorph.data.frame.r | 2 R/geomorph.support.code.r | 192 ++++++++++++++++-------------- R/globalIntegration.r | 7 - R/gpagen.r | 21 +-- R/integration.test.r | 9 - R/modularity.test.r | 16 +- R/morphol.disparity.r | 2 R/phylo.integration.r | 13 +- R/phylo.modularity.r | 11 - R/physignal.r | 9 - R/plotAllSpecimens.r | 5 R/plotGMPhyloMorphoSpace.r | 10 - R/plotOutliers.r | 2 R/plotRefToTarget.r | 1 R/plotTangentSpace.r | 9 - R/plotspec.r | 1 R/procD.allometry.r | 21 +-- R/procD.lm.r | 6 R/procD.pgls.r | 3 R/read.ply.r | 1 R/readland.tps.r | 23 ++- R/shape.predictor.r | 2 R/trajectory.analysis.r | 2 R/two.b.pls.r | 12 - R/warpRefMesh.r | 1 man/advanced.procD.lm.Rd | 31 ++++ man/combine.subsets.Rd | 4 man/compare.evol.rates.Rd | 8 - man/compare.multi.evol.rates.Rd | 10 + man/define.links.Rd | 2 man/define.modules.Rd | 2 man/define.sliders.Rd | 2 man/digit.fixed.Rd | 2 man/digitize2d.Rd | 3 man/digitsurface.Rd | 2 man/editTemplate.Rd | 3 man/findMeanSpec.Rd | 10 - man/geomorph.data.frame.Rd | 2 man/globalIntegration.Rd | 7 - man/gpagen.Rd | 21 +-- man/integration.test.Rd | 9 - man/modularity.test.Rd | 16 +- man/morphol.disparity.Rd | 2 man/phylo.integration.Rd | 14 +- man/phylo.modularity.Rd | 13 +- man/physignal.Rd | 11 + man/plotAllSpecimens.Rd | 7 - man/plotGMPhyloMorphoSpace.Rd | 13 +- man/plotOutliers.Rd | 2 man/plotRefToTarget.Rd | 2 man/plotTangentSpace.Rd | 9 - man/plotspec.Rd | 2 man/procD.allometry.Rd | 19 +- man/procD.lm.Rd | 6 man/procD.pgls.Rd | 5 man/read.ply.Rd | 3 man/readland.tps.Rd | 5 man/shape.predictor.Rd | 2 man/trajectory.analysis.Rd | 2 man/two.b.pls.Rd | 12 - man/warpRefMesh.Rd | 2 78 files changed, 620 insertions(+), 496 deletions(-)
Title: Resistant Procrustes Superimposition
Description: Based on RPS tools, a rather complete resistant shape
analysis of 2D and 3D datasets based on landmarks can be performed. In addition,
landmark-based resistant shape analysis of individual asymmetry in 2D for
matching or object symmetric structures is also possible.
Author: Guillermo Andres Pacheco [aut, cre],
Sebastian Torcida [aut],
Viviana Ferraggine [aut],
Federico Lotto [aut]
Maintainer: Guillermo Andres Pacheco <guillermopacheco.exa@gmail.com>
Diff between RPS versions 1.0.0 dated 2018-07-18 and 1.0.1 dated 2018-07-27
RPS-1.0.0/RPS/R/readland_txtJ.R |only RPS-1.0.0/RPS/man/readland.txtJ.Rd |only RPS-1.0.1/RPS/DESCRIPTION | 10 ++++---- RPS-1.0.1/RPS/MD5 | 26 +++++++++------------ RPS-1.0.1/RPS/NAMESPACE | 1 RPS-1.0.1/RPS/R/matchingsymm_RPS.R | 2 - RPS-1.0.1/RPS/R/objectsymm_RPS.R | 2 - RPS-1.0.1/RPS/R/procrustesCM_RPS.R | 10 ++++---- RPS-1.0.1/RPS/R/resunivMDS_RPS.R | 4 --- RPS-1.0.1/RPS/R/robgit_RPS.R | 9 ++++--- RPS-1.0.1/RPS/man/matchingsymm_RPS.Rd | 4 +-- RPS-1.0.1/RPS/man/objectsymm_RPS.Rd | 4 +-- RPS-1.0.1/RPS/man/procrustesCM_RPS.Rd | 14 ++++++----- RPS-1.0.1/RPS/man/resunivMDS_RPS.Rd | 3 -- RPS-1.0.1/RPS/man/single-quote-RPS-single-quote.Rd | 9 ++++--- 15 files changed, 47 insertions(+), 51 deletions(-)
Title: In-Line Documentation for R
Description: Generate your Rd documentation, 'NAMESPACE' file, and collation
field using specially formatted comments. Writing documentation in-line
with code makes it easier to keep your documentation up-to-date as your
requirements change. 'Roxygen2' is inspired by the 'Doxygen' system for C++.
Author: Hadley Wickham [aut, cre, cph],
Peter Danenberg [aut, cph],
Manuel Eugster [aut, cph],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between roxygen2 versions 6.0.1 dated 2017-02-06 and 6.1.0 dated 2018-07-27
roxygen2-6.0.1/roxygen2/R/enc.R |only roxygen2-6.0.1/roxygen2/man/source_package.Rd |only roxygen2-6.0.1/roxygen2/tests/testthat/Rd-example-5.R |only roxygen2-6.0.1/roxygen2/tests/testthat/test-nonASCII.R |only roxygen2-6.0.1/roxygen2/vignettes/collate.md |only roxygen2-6.0.1/roxygen2/vignettes/formatting.md |only roxygen2-6.0.1/roxygen2/vignettes/markdown.md |only roxygen2-6.0.1/roxygen2/vignettes/namespace.md |only roxygen2-6.0.1/roxygen2/vignettes/rd.md |only roxygen2-6.0.1/roxygen2/vignettes/rdkeywords.md |only roxygen2-6.0.1/roxygen2/vignettes/roxygen2.md |only roxygen2-6.1.0/roxygen2/DESCRIPTION | 32 roxygen2-6.1.0/roxygen2/MD5 | 179 +- roxygen2-6.1.0/roxygen2/NAMESPACE | 11 roxygen2-6.1.0/roxygen2/NEWS.md | 245 ++- roxygen2-6.1.0/roxygen2/R/RcppExports.R | 14 roxygen2-6.1.0/roxygen2/R/block.R |only roxygen2-6.1.0/roxygen2/R/field.R | 9 roxygen2-6.1.0/roxygen2/R/markdown-escaping.R | 1 roxygen2-6.1.0/roxygen2/R/markdown.R | 68 roxygen2-6.1.0/roxygen2/R/namespace.R | 67 roxygen2-6.1.0/roxygen2/R/object-defaults.R | 22 roxygen2-6.1.0/roxygen2/R/object-from-call.R | 12 roxygen2-6.1.0/roxygen2/R/object-package.R | 270 +++ roxygen2-6.1.0/roxygen2/R/object-s3.R | 2 roxygen2-6.1.0/roxygen2/R/object-usage.R | 4 roxygen2-6.1.0/roxygen2/R/parse.R | 255 +-- roxygen2-6.1.0/roxygen2/R/rd-describe-in.R | 4 roxygen2-6.1.0/roxygen2/R/rd-family.R | 1 roxygen2-6.1.0/roxygen2/R/rd-inherit.R | 6 roxygen2-6.1.0/roxygen2/R/rd-template.R | 19 roxygen2-6.1.0/roxygen2/R/rd.R | 78 - roxygen2-6.1.0/roxygen2/R/roclet.R | 45 roxygen2-6.1.0/roxygen2/R/roxygen.R | 2 roxygen2-6.1.0/roxygen2/R/roxygenize.R | 92 - roxygen2-6.1.0/roxygen2/R/safety.R | 10 roxygen2-6.1.0/roxygen2/R/source.R | 62 roxygen2-6.1.0/roxygen2/R/tag.R | 2 roxygen2-6.1.0/roxygen2/R/tokenize.R |only roxygen2-6.1.0/roxygen2/R/utils-io.R |only roxygen2-6.1.0/roxygen2/R/utils-rd.R | 7 roxygen2-6.1.0/roxygen2/R/utils.R | 55 roxygen2-6.1.0/roxygen2/R/vignette.R | 2 roxygen2-6.1.0/roxygen2/README.md | 9 roxygen2-6.1.0/roxygen2/build/vignette.rds |binary roxygen2-6.1.0/roxygen2/inst/doc/collate.html | 294 +++- roxygen2-6.1.0/roxygen2/inst/doc/formatting.Rmd | 4 roxygen2-6.1.0/roxygen2/inst/doc/formatting.html | 361 +++- roxygen2-6.1.0/roxygen2/inst/doc/markdown.Rmd | 8 roxygen2-6.1.0/roxygen2/inst/doc/markdown.html | 412 ++++- roxygen2-6.1.0/roxygen2/inst/doc/namespace.html | 214 ++ roxygen2-6.1.0/roxygen2/inst/doc/rd.R | 128 - roxygen2-6.1.0/roxygen2/inst/doc/rd.Rmd | 299 +--- roxygen2-6.1.0/roxygen2/inst/doc/rd.html | 728 ++++++---- roxygen2-6.1.0/roxygen2/inst/doc/rdkeywords.html | 466 ++++-- roxygen2-6.1.0/roxygen2/inst/doc/roxygen2.html | 192 ++ roxygen2-6.1.0/roxygen2/man/figures |only roxygen2-6.1.0/roxygen2/man/is_s3_generic.Rd | 2 roxygen2-6.1.0/roxygen2/man/markdown-test.Rd | 4 roxygen2-6.1.0/roxygen2/man/namespace_roclet.Rd | 9 roxygen2-6.1.0/roxygen2/man/parse_package.Rd |only roxygen2-6.1.0/roxygen2/man/rd_roclet.Rd | 6 roxygen2-6.1.0/roxygen2/man/roclet.Rd | 27 roxygen2-6.1.0/roxygen2/man/roxygen2-package.Rd | 10 roxygen2-6.1.0/roxygen2/man/roxygenize.Rd | 18 roxygen2-6.1.0/roxygen2/man/vignette_roclet.Rd | 1 roxygen2-6.1.0/roxygen2/src/RcppExports.cpp | 30 roxygen2-6.1.0/roxygen2/tests/testthat/Rd-example-5.txt |only roxygen2-6.1.0/roxygen2/tests/testthat/empty/DESCRIPTION | 3 roxygen2-6.1.0/roxygen2/tests/testthat/escapes.Rd |only roxygen2-6.1.0/roxygen2/tests/testthat/test-Rbuildignore.R | 5 roxygen2-6.1.0/roxygen2/tests/testthat/test-Rd-inherit.R | 38 roxygen2-6.1.0/roxygen2/tests/testthat/test-eval.R |only roxygen2-6.1.0/roxygen2/tests/testthat/test-namespace.R | 86 + roxygen2-6.1.0/roxygen2/tests/testthat/test-object-package.R |only roxygen2-6.1.0/roxygen2/tests/testthat/test-object-s3.R | 4 roxygen2-6.1.0/roxygen2/tests/testthat/test-object-s4.R | 39 roxygen2-6.1.0/roxygen2/tests/testthat/test-parse.R | 2 roxygen2-6.1.0/roxygen2/tests/testthat/test-rd-alias.R | 23 roxygen2-6.1.0/roxygen2/tests/testthat/test-rd-data.R | 4 roxygen2-6.1.0/roxygen2/tests/testthat/test-rd-doctype.R | 4 roxygen2-6.1.0/roxygen2/tests/testthat/test-rd-examples.R | 2 roxygen2-6.1.0/roxygen2/tests/testthat/test-rd-family.R | 10 roxygen2-6.1.0/roxygen2/tests/testthat/test-rd-introduction.R | 20 roxygen2-6.1.0/roxygen2/tests/testthat/test-rd-markdown-links.R | 143 + roxygen2-6.1.0/roxygen2/tests/testthat/test-rd-markdown.R | 51 roxygen2-6.1.0/roxygen2/tests/testthat/test-rd-package.R | 4 roxygen2-6.1.0/roxygen2/tests/testthat/test-rd-raw.R | 4 roxygen2-6.1.0/roxygen2/tests/testthat/test-rd-usage.R | 10 roxygen2-6.1.0/roxygen2/tests/testthat/test-rd.R | 18 roxygen2-6.1.0/roxygen2/tests/testthat/test-rdComplete.R | 3 roxygen2-6.1.0/roxygen2/tests/testthat/test-reexport.R | 28 roxygen2-6.1.0/roxygen2/tests/testthat/test-utf8.R |only roxygen2-6.1.0/roxygen2/tests/testthat/testEagerData/DESCRIPTION | 1 roxygen2-6.1.0/roxygen2/tests/testthat/testLazyData/DESCRIPTION | 1 roxygen2-6.1.0/roxygen2/tests/testthat/testNonASCII/DESCRIPTION | 6 roxygen2-6.1.0/roxygen2/tests/testthat/testNonASCII/R/a.r | 9 roxygen2-6.1.0/roxygen2/tests/testthat/testUtf8Escape |only roxygen2-6.1.0/roxygen2/vignettes/formatting.Rmd | 4 roxygen2-6.1.0/roxygen2/vignettes/markdown.Rmd | 8 roxygen2-6.1.0/roxygen2/vignettes/rd.Rmd | 299 +--- 101 files changed, 3928 insertions(+), 1699 deletions(-)
Title: Exact Tests and Confidence Intervals for 2x2 Tables
Description: Calculates conditional exact tests (Fisher's exact test, Blaker's exact test, or exact McNemar's test) and unconditional exact tests (including score-based tests on differences in proportions, ratios of proportions, and odds ratios, and Boshcloo's test) with appropriate matching confidence intervals, and provides power and sample size calculations. Gives melded confidence intervals for the binomial case. Gives boundary-optimized rejection region test (Gabriel, et al, 2018, <DOI:10.1002/sim.7579>), an unconditional exact test for the situation where the controls are all expected to fail.
Author: Michael P. Fay, Sally A. Hunsberger, Martha Nason, Erin Gabriel
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between exact2x2 versions 1.6.2 dated 2018-02-26 and 1.6.3 dated 2018-07-27
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/borrFunctions.R | 3 ++- build/vignette.rds |binary inst/doc/exact2x2.pdf |binary inst/doc/exact2x2Validation.pdf |binary inst/doc/exactMcNemar.pdf |binary inst/doc/midpAdjustment.pdf |binary inst/doc/unconditionalExact2x2Tests.pdf |binary man/borrTest.Rd | 8 +++++--- man/exact2x2-package.Rd | 18 +++++++++--------- 12 files changed, 34 insertions(+), 28 deletions(-)
Title: MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Description: A system for writing hierarchical statistical models largely compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do basic R-style math, and compiling both models and nimbleFunctions via custom-generated C++. 'NIMBLE' includes default methods for MCMC, particle filtering, Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction system makes it easy to do things like implement new MCMC samplers from R, customize the assignment of samplers to different parts of a model from R, and compile the new samplers automatically via C++ alongside the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New distributions and functions can be added, including as calls to external compiled code. Although most people think of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing arbitrary other kinds of model-generic algorithms as well. A full User Manual is available at <https://r-nimble.org>.
Author: Perry de Valpine, Christopher Paciorek, Daniel Turek, Cliff Anderson-Bergman, Nick Michaud, Fritz Obermeyer, Duncan Temple Lang, and see AUTHORS file for additional contributors.
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between nimble versions 0.6-11 dated 2018-06-14 and 0.6-12 dated 2018-07-27
nimble-0.6-11/nimble/NEWS |only nimble-0.6-12/nimble/DESCRIPTION | 10 nimble-0.6-12/nimble/INSTALL | 6 nimble-0.6-12/nimble/MD5 | 57 - nimble-0.6-12/nimble/R/BUGS_model.R | 9 nimble-0.6-12/nimble/R/BUGS_utils.R | 4 nimble-0.6-12/nimble/R/MCMC_build.R | 126 -- nimble-0.6-12/nimble/R/MCMC_configuration.R | 24 nimble-0.6-12/nimble/R/MCMC_conjugacy.R | 60 - nimble-0.6-12/nimble/R/MCMC_run.R | 11 nimble-0.6-12/nimble/R/MCMC_utils.R | 48 nimble-0.6-12/nimble/R/distributions_inputList.R | 86 - nimble-0.6-12/nimble/R/distributions_processInputList.R | 6 nimble-0.6-12/nimble/R/filtering_auxiliary.R | 6 nimble-0.6-12/nimble/R/filtering_bootstrap.R | 16 nimble-0.6-12/nimble/R/filtering_enkf.R | 3 nimble-0.6-12/nimble/R/filtering_liuwest.R | 2 nimble-0.6-12/nimble/configure | 239 ++-- nimble-0.6-12/nimble/configure.ac | 16 nimble-0.6-12/nimble/inst/CITATION | 6 nimble-0.6-12/nimble/inst/NEWS | 816 +++++++++++++++- nimble-0.6-12/nimble/inst/tests/test-models.R | 14 nimble-0.6-12/nimble/inst/tests/test-user.R | 46 nimble-0.6-12/nimble/inst/tests/test-waic.R | 14 nimble-0.6-12/nimble/man/MCMCconf-class.Rd | 6 nimble-0.6-12/nimble/man/buildAuxiliaryFilter.Rd | 6 nimble-0.6-12/nimble/man/buildBootstrapFilter.Rd | 13 nimble-0.6-12/nimble/man/buildEnsembleKF.Rd | 3 nimble-0.6-12/nimble/man/buildLiuWestFilter.Rd | 2 nimble-0.6-12/nimble/man/buildMCMC.Rd | 2 30 files changed, 1288 insertions(+), 369 deletions(-)
Title: Interpolate Munsell Renotation Data from Hue/Chroma to CIE/RGB
Description: Methods for interpolating data in the Munsell color system following the ASTM D-1535 standard. Hues and chromas with decimal values can be interpolated and converted to/from the Munsell color system and CIE xyY, CIE XYZ, CIE Lab, CIE Luv, or RGB. Includes ISCC-NBS color block lookup. Based on the work by Paul Centore, "The Munsell and Kubelka-Munk Toolbox".
Author: Jose Gama [aut, trl],
Paul Centore [aut, cph],
Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between munsellinterpol versions 2.0.1 dated 2018-06-07 and 2.1-3 dated 2018-07-27
munsellinterpol-2.0.1/munsellinterpol/R/adaption.R |only munsellinterpol-2.0.1/munsellinterpol/man/XYZ2xyY.Rd |only munsellinterpol-2.0.1/munsellinterpol/man/adaption.Rd |only munsellinterpol-2.0.1/munsellinterpol/man/lab2xyz.Rd |only munsellinterpol-2.0.1/munsellinterpol/man/labtoMunsell.Rd |only munsellinterpol-2.0.1/munsellinterpol/man/luv2xyz.Rd |only munsellinterpol-2.0.1/munsellinterpol/man/luvtoMunsell.Rd |only munsellinterpol-2.0.1/munsellinterpol/man/srgb2xyz.Rd |only munsellinterpol-2.0.1/munsellinterpol/man/xyY2XYZ.Rd |only munsellinterpol-2.0.1/munsellinterpol/man/xyz2lab.Rd |only munsellinterpol-2.0.1/munsellinterpol/man/xyz2luv.Rd |only munsellinterpol-2.1-3/munsellinterpol/DESCRIPTION | 12 munsellinterpol-2.1-3/munsellinterpol/MD5 | 96 - munsellinterpol-2.1-3/munsellinterpol/NAMESPACE | 30 munsellinterpol-2.1-3/munsellinterpol/NEWS.md | 8 munsellinterpol-2.1-3/munsellinterpol/R/ColorDifference.R |only munsellinterpol-2.1-3/munsellinterpol/R/RGB.R | 48 munsellinterpol-2.1-3/munsellinterpol/R/conversions.R | 548 +++------- munsellinterpol-2.1-3/munsellinterpol/R/datasets.R | 13 munsellinterpol-2.1-3/munsellinterpol/R/events.R | 29 munsellinterpol-2.1-3/munsellinterpol/R/inversions.R | 19 munsellinterpol-2.1-3/munsellinterpol/R/logging.R | 3 munsellinterpol-2.1-3/munsellinterpol/R/lookup.R | 13 munsellinterpol-2.1-3/munsellinterpol/R/optimals.R | 16 munsellinterpol-2.1-3/munsellinterpol/R/plots.R | 44 munsellinterpol-2.1-3/munsellinterpol/R/xyYtoMunsell.R | 8 munsellinterpol-2.1-3/munsellinterpol/build/vignette.rds |binary munsellinterpol-2.1-3/munsellinterpol/demo/munselltest.R | 2 munsellinterpol-2.1-3/munsellinterpol/inst/doc/dental.Rmd |only munsellinterpol-2.1-3/munsellinterpol/inst/doc/dental.html |only munsellinterpol-2.1-3/munsellinterpol/inst/doc/lightness.pdf |binary munsellinterpol-2.1-3/munsellinterpol/inst/doc/lociHC.pdf |binary munsellinterpol-2.1-3/munsellinterpol/inst/doc/munsellinterpol-guide.Rmd | 20 munsellinterpol-2.1-3/munsellinterpol/inst/doc/munsellinterpol-guide.html | 67 - munsellinterpol-2.1-3/munsellinterpol/inst/extdata/Centore-Table2.txt |only munsellinterpol-2.1-3/munsellinterpol/inst/extdata/dental.txt |only munsellinterpol-2.1-3/munsellinterpol/man/IsWithinMacAdamLimits.Rd | 2 munsellinterpol-2.1-3/munsellinterpol/man/LabtoMunsell.Rd |only munsellinterpol-2.1-3/munsellinterpol/man/LuvtoMunsell.Rd |only munsellinterpol-2.1-3/munsellinterpol/man/MunsellToLab.Rd | 18 munsellinterpol-2.1-3/munsellinterpol/man/MunsellToLuv.Rd | 18 munsellinterpol-2.1-3/munsellinterpol/man/MunsellToRGB.Rd | 24 munsellinterpol-2.1-3/munsellinterpol/man/MunsellToXYZ.Rd | 12 munsellinterpol-2.1-3/munsellinterpol/man/MunsellTosRGB.Rd | 37 munsellinterpol-2.1-3/munsellinterpol/man/MunsellToxyY.Rd | 4 munsellinterpol-2.1-3/munsellinterpol/man/NickersonColorDifference.Rd |only munsellinterpol-2.1-3/munsellinterpol/man/RGBtoMunsell.Rd | 23 munsellinterpol-2.1-3/munsellinterpol/man/XYZtoMunsell.Rd | 2 munsellinterpol-2.1-3/munsellinterpol/man/plotPatchesH.Rd | 10 munsellinterpol-2.1-3/munsellinterpol/man/sRGBtoMunsell.Rd | 43 munsellinterpol-2.1-3/munsellinterpol/man/xyYtoMunsell.Rd | 6 munsellinterpol-2.1-3/munsellinterpol/man/xyz2srgb.Rd | 45 munsellinterpol-2.1-3/munsellinterpol/tests/test-VandY.R | 14 munsellinterpol-2.1-3/munsellinterpol/tests/test-conversions.R | 283 ----- munsellinterpol-2.1-3/munsellinterpol/tests/test-poly.R | 7 munsellinterpol-2.1-3/munsellinterpol/tests/test-transforms.R | 23 munsellinterpol-2.1-3/munsellinterpol/vignettes/bibliography.bib | 52 munsellinterpol-2.1-3/munsellinterpol/vignettes/dental.Rmd |only munsellinterpol-2.1-3/munsellinterpol/vignettes/munsellinterpol-guide.Rmd | 20 59 files changed, 705 insertions(+), 914 deletions(-)
More information about munsellinterpol at CRAN
Permanent link
Title: Quantification of Fate Bias in Multipotent Progenitors
Description: Application of 'FateID' allows computation and visualization of cell fate bias for multi-lineage single cell transcriptome data. Herman, J.S., Sagar, Grün D. (2017) <DOI:10.1038/nmeth.4662>.
Author: Dominic Grün <dominic.gruen@gmail.com>
Maintainer: Dominic Grün <dominic.gruen@gmail.com>
Diff between FateID versions 0.1.2 dated 2018-07-05 and 0.1.3 dated 2018-07-27
DESCRIPTION | 17 ++--- MD5 | 28 ++++---- NAMESPACE | 5 - R/FateID_functions.R | 170 +++++++++++++++++++++++++++----------------------- inst/doc/FateID.R | 11 +-- inst/doc/FateID.Rmd | 49 +++++++------- inst/doc/FateID.html | 160 ++++++++++++++++++++++++++++++----------------- man/dptTraj.Rd | 3 man/fateBias.Rd | 17 +++-- man/filterset.Rd | 2 man/getsom.Rd | 10 -- man/plotexpression.Rd | 12 +-- man/plotheatmap.Rd | 2 man/procsom.Rd | 2 vignettes/FateID.Rmd | 49 +++++++------- 15 files changed, 304 insertions(+), 233 deletions(-)
Title: Clients to the 'Web of Science' and 'InCites' APIs
Description: An R client to the 'Web of Science' and 'InCites'
<https://clarivate.com/products/data-integration/> web services, which
allow you to programmatically download publication and citation data
indexed in the 'Web of Science' and 'InCites' databases.
Author: Christopher Baker [aut, cre]
Maintainer: Christopher Baker <chriscrewbaker@gmail.com>
Diff between wosr versions 0.1.1 dated 2018-05-02 and 0.1.2 dated 2018-07-27
DESCRIPTION | 6 ++-- MD5 | 25 ++++++++++--------- NAMESPACE | 2 + NEWS.md | 14 +++++++++- R/download-wos.R | 18 ++++++++----- R/enfore-schema.R | 9 ++++++ R/io.R |only R/process-incites.R | 22 ++++++++++++---- R/process-wos.R | 13 ++++++++-- R/pull-incites.R | 9 +++++- R/utils.R | 8 ++++-- README.md | 65 +++++++++++++++++++++++++------------------------- man/pull_incites.Rd | 8 +++++- man/read_wos_data.Rd |only man/write_wos_data.Rd |only 15 files changed, 130 insertions(+), 69 deletions(-)
Title: Flexible Genotyping for Polyploids
Description: Implements empirical Bayes approaches to genotype
polyploids from next generation sequencing data while
accounting for allelic bias, overdispersion, and sequencing
error. The main function is flexdog(), which allows the specification
of many different genotype distributions. An experimental
function that takes into account varying levels of relatedness
is implemented in mupdog(). Also provided are functions to
simulate genotypes, rgeno(), and read-counts, rflexdog(), as well as
functions to calculate oracle genotyping error rates, oracle_mis(), and
correlation with the true genotypes, oracle_cor(). These latter two
functions are useful for read depth calculations. Run
browseVignettes(package = "updog") in R for example usage. See also
Gerard et al. (2018) <doi:10.1101/281550> for details on the
implemented methods.
Author: David Gerard [aut, cre] (<https://orcid.org/0000-0001-9450-5023>)
Maintainer: David Gerard <gerard.1787@gmail.com>
Diff between updog versions 1.0.0 dated 2018-07-10 and 1.0.1 dated 2018-07-27
updog-1.0.0/updog/man/update_pp.Rd |only updog-1.0.1/updog/DESCRIPTION | 6 updog-1.0.1/updog/MD5 | 72 updog-1.0.1/updog/NAMESPACE | 2 updog-1.0.1/updog/R/RcppExports.R | 17 updog-1.0.1/updog/R/ashdog.R | 2698 ++++++++++---------- updog-1.0.1/updog/R/double_red.R |only updog-1.0.1/updog/R/pref.R | 122 updog-1.0.1/updog/README.md | 10 updog-1.0.1/updog/inst/NEWS.md | 29 updog-1.0.1/updog/inst/doc/oracle_calculations.html | 8 updog-1.0.1/updog/inst/doc/parallel_computing.html | 6 updog-1.0.1/updog/inst/doc/simulate_ngs.html | 10 updog-1.0.1/updog/inst/doc/smells_like_updog.html | 8 updog-1.0.1/updog/inst/include |only updog-1.0.1/updog/man/dr_pen.Rd |only updog-1.0.1/updog/man/flex_update_pivec.Rd | 2 updog-1.0.1/updog/man/flexdog.Rd | 113 updog-1.0.1/updog/man/flexdog_full.Rd | 142 - updog-1.0.1/updog/man/get_bivalent_probs_dr.Rd |only updog-1.0.1/updog/man/get_conv_inner_weights.Rd | 6 updog-1.0.1/updog/man/initialize_pivec.Rd | 2 updog-1.0.1/updog/man/pivec_from_segmats.Rd | 2 updog-1.0.1/updog/man/pp_brent_obj.Rd | 4 updog-1.0.1/updog/man/uni_em_const.Rd | 7 updog-1.0.1/updog/man/uni_obj_const.Rd | 7 updog-1.0.1/updog/man/update_dr.Rd |only updog-1.0.1/updog/man/update_pp_f1.Rd |only updog-1.0.1/updog/man/update_pp_s1.Rd |only updog-1.0.1/updog/src/RcppExports.cpp | 925 ++++++ updog-1.0.1/updog/src/betabinom.cpp | 2 updog-1.0.1/updog/src/em.cpp | 2 updog-1.0.1/updog/src/flexdog.cpp | 11 updog-1.0.1/updog/src/oracle.cpp | 8 updog-1.0.1/updog/src/pref.cpp | 2 updog-1.0.1/updog/src/util_funs.cpp | 13 updog-1.0.1/updog/src/weighted_em_const.cpp | 69 updog-1.0.1/updog/tests/testthat/test_cvxr.R | 3 updog-1.0.1/updog/tests/testthat/test_dr.R |only updog-1.0.1/updog/tests/testthat/test_flexdog.R | 521 ++- updog-1.0.1/updog/tests/testthat/test_uni_gem.R | 16 41 files changed, 3011 insertions(+), 1834 deletions(-)
Title: The MCFS-ID Algorithm for Feature Selection and Interdependency
Discovery
Description: MCFS-ID (Monte Carlo Feature Selection and Interdependency Discovery) is a Monte Carlo method-based tool for feature selection. It also allows for the discovery of interdependencies between the relevant features. MCFS-ID is particularly suitable for the analysis of high-dimensional, 'small n large p' transactional and biological data. M. Draminski, J. Koronacki (2018) <doi:10.18637/jss.v085.i12>.
Author: Michal Draminski [aut, cre],
Jacek Koronacki [aut],
Julian Zubek [ctb]
Maintainer: Michal Draminski <michal.draminski@ipipan.waw.pl>
Diff between rmcfs versions 1.2.12 dated 2018-07-26 and 1.2.13 dated 2018-07-27
DESCRIPTION | 9 +++++---- LICENSE.note | 6 +++--- MD5 | 11 +++++++---- NEWS.md | 4 ++++ build |only inst/doc/v85i12.pdf |binary inst/doc/v85i12.pdf.asis |only vignettes |only 8 files changed, 19 insertions(+), 11 deletions(-)
Title: Random Perturbation of Count Matrices
Description: The perturbR() function incrementally perturbs network edges (using the rewireR function)and compares the resulting community detection solutions
from the rewired networks with the solution found for the original network.
These comparisons aid in understanding the stability of the
original solution. The package requires symmetric, weighted (specifically, count) matrices/networks.
Author: KM Gates [aut, cre],
Zachary Fisher [aut],
Cara Arizmendi [aut]
Maintainer: KM Gates <gateskm@email.unc.edu>
Diff between perturbR versions 0.1.1 dated 2018-03-21 and 0.1.2 dated 2018-07-27
DESCRIPTION | 10 +++--- MD5 | 25 +++++++++++---- NAMESPACE | 4 -- R/arandi.R |only R/perturbR-pkg.R | 4 -- R/perturbR.R | 91 ++++++++++++++++++++++++++++++------------------------- R/rewireR.R | 3 + R/vi.dist.R |only build |only inst |only man/arandi.Rd |only man/perturbR.Rd | 11 +----- man/vi.dist.Rd |only vignettes |only 14 files changed, 80 insertions(+), 68 deletions(-)
Title: Basic Robust Statistics
Description: "Essential" Robust Statistics.
Tools allowing to analyze data with robust methods. This includes
regression methodology including model selections and multivariate
statistics where we strive to cover the book "Robust Statistics,
Theory and Methods" by 'Maronna, Martin and Yohai'; Wiley 2006.
Author: Martin Maechler [aut, cre],
Peter Rousseeuw [ctb] (Qn and Sn),
Christophe Croux [ctb] (Qn and Sn),
Valentin Todorov [aut] (most robust Cov),
Andreas Ruckstuhl [aut] (nlrob, anova, glmrob),
Matias Salibian-Barrera [aut] (lmrob orig.),
Tobias Verbeke [ctb, fnd] (mc, adjbox),
Manuel Koller [aut] (mc, lmrob, psi-func.),
Eduardo L. T. Conceicao [aut] (MM-, tau-, CM-, and MTL- nlrob),
Maria Anna di Palma [ctb] (initial version of Comedian)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustbase versions 0.93-1.1 dated 2018-07-19 and 0.93-2 dated 2018-07-27
DESCRIPTION | 12 MD5 | 110 ++++---- NAMESPACE | 2 R/glmrob.R | 2 R/glmrobMqle.R | 4 R/lmrob.M.S.R | 2 R/lmrob.MM.R | 6 R/lmrob.R | 23 + R/ltsReg.R | 2 R/mc.R | 29 +- build/partial.rdb |binary inst/NEWS.Rd | 24 + inst/doc/fastMcd-kmini.R | 2 inst/doc/fastMcd-kmini.pdf |binary inst/doc/lmrob_simulation.R | 2 inst/doc/lmrob_simulation.pdf | 376 +++++++++++++---------------- inst/doc/psi_functions.R | 2 inst/doc/psi_functions.pdf | 105 +++----- inst/xtraR/mcnaive.R | 2 man/mc.Rd | 10 src/init.c | 2 src/lmrob.c | 197 ++++++++------- src/mc.c | 93 +++---- src/robustbase.h | 6 tests/NAcoef.R | 4 tests/NAcoef.Rout.save | 9 tests/Rsquared.R | 3 tests/Rsquared.Rout.save | 7 tests/lmrob-data.R | 22 + tests/lmrob-outlierStats.R | 24 + tests/mc-etc.R | 21 + tests/nlregrob-tst.R | 4 tests/weights.Rout.save | 7 vignettes/plot-fig-AdB2-1.pdf |binary vignettes/plot-fig-Mscale-all.pdf |binary vignettes/plot-fig-Mscale.pdf |binary vignettes/plot-fig-cpr.pdf |binary vignettes/plot-fig-efficiency-all.pdf |binary vignettes/plot-fig-efficiency.pdf |binary vignettes/plot-fig-emp-level.pdf |binary vignettes/plot-fig-example-design.pdf |binary vignettes/plot-fig-lqq-level.pdf |binary vignettes/plot-fig-max-asymptotic-bias.pdf |binary vignettes/plot-fig-meanscale.pdf |binary vignettes/plot-fig-power-1-0_2.pdf |binary vignettes/plot-fig-power-1-0_4.pdf |binary vignettes/plot-fig-power-1-0_6.pdf |binary vignettes/plot-fig-power-1-0_8.pdf |binary vignettes/plot-fig-power-1-1.pdf |binary vignettes/plot-fig-pred-points.pdf |binary vignettes/plot-fig-psi-functions.pdf |binary vignettes/plot-fig-qscale-all.pdf |binary vignettes/plot-fig-qscale.pdf |binary vignettes/plot-fig-sdAdB2-1.pdf |binary vignettes/plot-fig-sdscale-1.pdf |binary vignettes/plot-fig-sdscale-all.pdf |binary 56 files changed, 604 insertions(+), 510 deletions(-)
Title: Weibull Analysis for Reliability Engineering
Description: Life data analysis in the graphical tradition of Waloddi Weibull. Methods derived from Robert B. Abernethy (2008, ISBN 0-965306-3-2), Wayne Nelson (1982, ISBN: 9780471094586) <DOI:10.1002/0471725234>, William Q. Meeker and Lois A. Escobar (1998, ISBN: 1-471-14328-6), John I. McCool, (2012, ISBN: 9781118217986) <DOI:10.1002/9781118351994>.
Author: David Silkworth [aut],
Jurgen Symynck [aut],
Jacob Ormerod [cre],
OpenReliability.org [cph]
Maintainer: Jacob Ormerod <jake@openreliability.org>
Diff between WeibullR versions 1.0.8 dated 2018-04-18 and 1.0.10 dated 2018-07-27
DESCRIPTION | 12 MD5 | 36 - R/AbPval.r | 3 R/Legend.R | 36 + R/MLEcontour.r | 3 R/getCCC2.r | 4 R/getPercentilePlottingPositions.r | 3 R/lslr.r | 6 R/mlefit.r | 34 - R/options.wblr.R | 3 R/pivotal.rr.r | 5 R/wblr.R | 3 R/wblrLoglike.r | 4 man/options.wblr.Rd | 6 man/plot.wblr.Rd | 6 src/CallgetPvalue.cpp | 8 src/LSLR.cpp | 873 ++++++++++++++++++------------------- src/MLEmodel.cpp | 436 +++++++++++++----- src/init.c | 47 + 19 files changed, 904 insertions(+), 624 deletions(-)
Title: Analyse Sentiment of English Sentences
Description: Analyses sentiment of a sentence in English and assigns score to it. It can classify sentences to the following categories of sentiments:- Positive, Negative, very Positive, very negative,
Neutral. For a vector of sentences, it counts the number of sentences in each
category of sentiment.In calculating the score, negation and various degrees
of adjectives are taken into consideration. It deals only with English sentences.
Author: Subhasree Bose <subhasree10.7@gmail.com> with contributons from Saptarsi Goswami.
Maintainer: Subhasree Bose <subhasree10.7@gmail.com>
Diff between RSentiment versions 2.2.1 dated 2017-10-15 and 2.2.2 dated 2018-07-27
DESCRIPTION | 8 +- MD5 | 16 ++--- R/custom.R | 62 ++++++++++------------- R/test.R | 2 man/calculate_custom_score.Rd | 9 ++- man/calculate_custom_sentiment.Rd | 9 ++- man/calculate_custom_total_presence_sentiment.Rd | 8 ++ tests/testthat/testing.R | 6 +- vignettes/Introduction.Rmd | 2 9 files changed, 61 insertions(+), 61 deletions(-)
Title: Bootstrap Methods for Various Network Estimation Routines
Description: Bootstrap methods to assess accuracy and stability of estimated network structures
and centrality indices. Allows for flexible specification of any undirected network
estimation procedure in R, and offers default sets for 'qgraph', 'IsingFit', 'IsingSampler',
'glasso', 'huge' and 'parcor' packages.
Author: Sacha Epskamp and Eiko I. Fried
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between bootnet versions 1.0.1 dated 2017-09-06 and 1.1.0 dated 2018-07-27
bootnet-1.0.1/bootnet/R/checkDefault.R |only bootnet-1.1.0/bootnet/DESCRIPTION | 10 bootnet-1.1.0/bootnet/MD5 | 53 - bootnet-1.1.0/bootnet/NAMESPACE | 18 bootnet-1.1.0/bootnet/NEWS | 31 bootnet-1.1.0/bootnet/R/bootTable.R | 115 ++ bootnet-1.1.0/bootnet/R/bootnet.R | 269 ++++-- bootnet-1.1.0/bootnet/R/bootnetResultsMethods.R | 43 - bootnet-1.1.0/bootnet/R/checkInput.R | 13 bootnet-1.1.0/bootnet/R/defaultFunctions.R | 710 +++++++++++++++-- bootnet-1.1.0/bootnet/R/estimateNetwork.R | 117 ++ bootnet-1.1.0/bootnet/R/netSimulator.R | 57 + bootnet-1.1.0/bootnet/R/netSimulator_methods.R | 27 bootnet-1.1.0/bootnet/R/parSim.R | 7 bootnet-1.1.0/bootnet/R/plotMethod.R | 229 ++++- bootnet-1.1.0/bootnet/R/printMethod.R | 143 ++- bootnet-1.1.0/bootnet/R/replicationSimulator.R |only bootnet-1.1.0/bootnet/R/replicationSimulator_methods.R |only bootnet-1.1.0/bootnet/R/simGraph.R | 81 + bootnet-1.1.0/bootnet/R/summaryMethod.R | 79 + bootnet-1.1.0/bootnet/R/zzz.R | 3 bootnet-1.1.0/bootnet/man/bootnet.Rd | 26 bootnet-1.1.0/bootnet/man/estimateNetwork.Rd | 112 ++ bootnet-1.1.0/bootnet/man/genGGM.Rd | 9 bootnet-1.1.0/bootnet/man/netSimulator.Rd | 19 bootnet-1.1.0/bootnet/man/plot.bootnet.Rd | 32 bootnet-1.1.0/bootnet/man/plot.netSimulator.Rd | 26 bootnet-1.1.0/bootnet/man/plotBootnetResult.Rd | 6 bootnet-1.1.0/bootnet/man/summary.bootnet.Rd | 9 29 files changed, 1850 insertions(+), 394 deletions(-)
Title: An Interface to the Nexus Class Library
Description: An interface to the Nexus Class Library which allows parsing
of NEXUS, Newick and other phylogenetic tree file formats. It provides
elements of the file that can be used to build phylogenetic objects
such as ape's 'phylo' or phylobase's 'phylo4(d)'. This functionality
is demonstrated with 'read_newick_phylo()' and 'read_nexus_phylo()'.
Author: Francois Michonneau [aut, cre]
(<https://orcid.org/0000-0002-9092-966X>),
Ben Bolker [aut] (<https://orcid.org/0000-0002-2127-0443>),
Mark Holder [aut] (<https://orcid.org/0000-0001-5575-0536>),
Paul Lewis [aut] (<https://orcid.org/0000-0001-9852-8759>),
Brian O'Meara [aut] (<https://orcid.org/0000-0002-0337-5997>)
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between rncl versions 0.8.2 dated 2016-12-16 and 0.8.3 dated 2018-07-27
DESCRIPTION | 29 ++++++----- LICENSE | 2 MD5 | 27 ++++++----- NEWS.md | 3 + R/RcppExports.R | 8 +-- R/collapse_singles.R | 5 +- R/rncl.R | 66 +++++++++++++++------------ README.md | 8 ++- man/read_nexus_phylo.Rd | 21 +++++--- man/rncl.Rd | 54 +++++++++++----------- src/RcppExports.cpp | 11 ++-- src/collapse_singles.cpp | 12 +++- src/ncl/20180727-075226-r-pkg-update-err.log |only src/ncl/20180727-075226-r-pkg-update-out.log |only src/ncl/nxstaxablock.h | 4 - src/rncl_init.c |only 16 files changed, 142 insertions(+), 108 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality methods and much more.
Author: See AUTHORS file.
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between igraph versions 1.2.1 dated 2018-03-10 and 1.2.2 dated 2018-07-27
DESCRIPTION | 10 ++++++---- MD5 | 12 ++++++------ configure | 18 +++++++++--------- configure.ac | 2 +- inst/NEWS.md | 6 ++++++ src/Makevars.win | 2 +- src/igraph_version.h | 2 +- 7 files changed, 30 insertions(+), 22 deletions(-)
Title: Encoding Coordinates into 'Google' Polylines
Description: Encodes simple feature ('sf') objects and coordinates, and decodes polylines
using the 'Google' polyline encoding algorithm (<https://developers.google.com/maps/documentation/utilities/polylinealgorithm>).
Author: David Cooley [aut, cre],
Paulo Barcelos [ctb] (Author of c++ decode_polyline)
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between googlePolylines versions 0.6.1 dated 2018-05-25 and 0.6.2 dated 2018-07-27
DESCRIPTION | 8 - MD5 | 30 +++--- R/Encode.R | 12 ++ R/RcppExports.R | 4 R/wkt.R | 1 inst/doc/sfencode.html | 34 +++---- man/encode.Rd | 9 + src/RcppExports.cpp | 13 ++ src/encode.cpp | 19 --- src/googlePolylines.cpp | 28 +++++ src/wkt.cpp | 4 tests/testthat/test-Encode.R | 43 +++----- tests/testthat/test-Utils_sf.R | 8 - tests/testthat/test-googlePolylinels-package.R | 1 tests/testthat/test-sfencoded.R | 14 +- tests/testthat/test-wkt.R | 120 +++++++------------------ 16 files changed, 163 insertions(+), 185 deletions(-)
More information about googlePolylines at CRAN
Permanent link
Title: Call 'EPANET' Functions to Simulate Pipe Networks
Description: Enables simulation of water piping networks using 'EPANET'.
The package provides functions from the 'EPANET' programmer's toolkit as R
functions so that basic or customized simulations can be carried out from R.
The package uses 'EPANET' version 2.1 from Open Water Analytics
<https://github.com/OpenWaterAnalytics/EPANET/releases/tag/v2.1>.
Author: Ernesto Arandia [aut],
Bradley Eck [aut, cre],
Lew Rossman [aut],
Michael Tryby [ctb],
Feng Shang [ctb],
James Uber [ctb],
Tom Taxon [ctb],
Sam Hatchett [ctb],
Hyoungmin Woo [ctb],
Jinduan Chen [ctb],
Yunier Soad [ctb],
Mike Kane [ctb],
Demetrios Eliades [ctb],
Will Furnass [ctb],
Steffen Macke [ctb],
Mariosmsk [ctb],
Elad Salomons [ctb],
Maurizio Cingi [ctb],
Bryant McDonnell [ctb],
IBM Corp. [cph],
Open Water Analytics [cph]
Maintainer: Bradley Eck <brad@bradeck.net>
Diff between epanet2toolkit versions 0.2.1 dated 2018-01-31 and 0.3.2 dated 2018-07-27
DESCRIPTION | 8 +-- MD5 | 29 +++++------ R/quality.r | 10 ++- R/times.r | 12 +--- README.md | 3 + inst/CITATION |only src/hash.c | 2 src/input2.c | 5 + src/report.c | 9 +-- src/rules.c | 9 +-- src/toolkit.c | 118 ++++++++++++++++++++++----------------------- tests/testthat/Net1-ld.rpt | 6 +- tests/testthat/Net1.rpt | 6 +- tests/testthat/Net2.rpt | 6 +- tests/testthat/n1.rpt | 6 +- tests/testthat/net3.rpt | 95 +++++++++++++++++++++++++++++++++++- 16 files changed, 209 insertions(+), 115 deletions(-)
More information about epanet2toolkit at CRAN
Permanent link
Title: Amazon Web Services Request Signatures
Description: Generates version 2 and version 4 request signatures for Amazon Web Services ('AWS') <https://aws.amazon.com/> Application Programming Interfaces ('APIs') and provides a mechanism for retrieving credentials from environment variables, 'AWS' credentials files, and 'EC2' instance metadata. For use on 'EC2' instances, users will need to install the suggested package 'aws.ec2metadata' <https://cran.r-project.org/package=aws.ec2metadata>.
Author: Thomas J. Leeper [aut, cre] (<https://orcid.org/0000-0003-4097-6326>)
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between aws.signature versions 0.4.1 dated 2018-04-09 and 0.4.4 dated 2018-07-27
DESCRIPTION | 12 +-- MD5 | 31 ++++---- NEWS.md | 18 +++++ R/aws.signature-package.R | 2 R/locate_credentials.R | 114 +++++++++++++++++++++++++------- R/read_credentials.R | 27 +++++-- R/string_to_sign.R | 2 R/v2.R | 10 ++ R/v4.R | 20 +++++ README.md | 21 +++-- man/aws.signature-package.Rd | 2 man/credentials.Rd | 24 +++--- man/read_credentials.Rd | 16 ++-- man/signature_v2_auth.Rd | 2 man/signature_v4_auth.Rd | 11 ++- tests/testthat/tests-digital-ocean.R |only tests/testthat/tests-read_credentials.R | 5 + 17 files changed, 231 insertions(+), 86 deletions(-)
Title: Reading Annual Financial Reports from Bovespa's DFP, FRE and FCA
System
Description: Reads annual financial reports including assets, liabilities, dividends history, stockholder composition and much more from Bovespa's DFP, FRE and FCA systems <http://www.bmfbovespa.com.br/en_us/products/listed-equities-and-derivatives/equities/listed-companies.htm>.
These are web based interfaces for all financial reports of companies traded at Bovespa. The package is specially designed for large scale data importation, keeping a tabular (long) structure for easier processing.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetDFPData versions 0.8 dated 2018-07-16 and 0.9 dated 2018-07-27
DESCRIPTION | 8 +-- MD5 | 14 +++--- NEWS.md | 4 + R/gdfpd_read_dfp_zip_file.R | 63 ++++++++++++++++++++---------- R/gdfpd_utils.R | 8 ++- inst/doc/gdfpd-vignette-introduction.html | 4 - man/gdfpd.read.dfp.zip.file.Rd | 4 - man/gdfpd.read.fwf.file.Rd | 6 +- 8 files changed, 72 insertions(+), 39 deletions(-)
Title: Multivariate Imputation by Chained Equations
Description: Multiple imputation using Fully Conditional Specification (FCS)
implemented by the MICE algorithm as described in Van Buuren and
Groothuis-Oudshoorn (2011) <doi:10.18637/jss.v045.i03>. Each variable has
its own imputation model. Built-in imputation models are provided for
continuous data (predictive mean matching, normal), binary data (logistic
regression), unordered categorical data (polytomous logistic regression)
and ordered categorical data (proportional odds). MICE can also impute
continuous two-level data (normal model, pan, second-level variables).
Passive imputation can be used to maintain consistency between variables.
Various diagnostic plots are available to inspect the quality of the
imputations.
Author: Stef van Buuren [aut, cre],
Karin Groothuis-Oudshoorn [aut],
Alexander Robitzsch [ctb],
Gerko Vink [ctb],
Lisa Doove [ctb],
Shahab Jolani [ctb],
Rianne Schouten [ctb],
Philipp Gaffert [ctb],
Florian Meinfelder [ctb],
Bernie Gray [ctb]
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Diff between mice versions 3.2.0 dated 2018-07-24 and 3.3.0 dated 2018-07-27
DESCRIPTION | 8 - MD5 | 19 +- NEWS.md | 205 +----------------------------- R/D1.R | 6 R/mice.impute.2l.norm.R | 1 R/sampler.R | 1 tests/testthat/Rplots.pdf |only tests/testthat/test-D1.R | 27 ++- tests/testthat/test-D3.R | 2 tests/testthat/test-mice.impute.2l.norm.R | 10 - tests/testthat/test-pool.R | 2 11 files changed, 53 insertions(+), 228 deletions(-)
Title: Interface to 'typeform' Results
Description: An R interface to the 'typeform' <https://typeform.com> application program interface.
Also provides functions for downloading your results.
Author: Colin Gillespie [aut, cre]
Maintainer: Colin Gillespie <csgillespie@gmail.com>
Diff between rtypeform versions 0.3.3 dated 2017-12-02 and 0.4.0 dated 2018-07-27
DESCRIPTION | 9 +++++---- MD5 | 18 ++++++++++++------ NAMESPACE | 1 + NEWS.md | 5 +++++ R/get_results.R | 28 +++++++++++++++++++++++++++- R/get_typeforms.R | 2 +- R/set_api.R |only R/typeformAddin.R |only R/zzz.R |only inst |only man/set_api.Rd |only man/typeformAddin.Rd |only tests/testthat/test_get_results.R | 10 +++++----- 13 files changed, 56 insertions(+), 17 deletions(-)
Title: In-Process Version of 'MonetDB'
Description: An in-process version of 'MonetDB', a SQL database designed for analytical tasks. Similar to 'SQLite', the database runs entirely inside the 'R' shell.
Author: Hannes Mühleisen [aut, cre] (<https://orcid.org/0000-0001-8552-0029>),
Mark Raasveldt [ctb],
Thomas Lumley [ctb],
MonetDB B.V. [cph],
The Regents of the University of California [cph],
Kungliga Tekniska Hogskolan [cph],
Free Software Foundation, Inc. [cph]
Maintainer: Hannes Mühleisen <hannes@cwi.nl>
Diff between MonetDBLite versions 0.5.1 dated 2018-01-14 and 0.6.0 dated 2018-07-27
MonetDBLite-0.5.1/MonetDBLite/src/monetdblite/Makefile |only MonetDBLite-0.5.1/MonetDBLite/src/monetdblite/src/sql/server/sql_parser.y |only MonetDBLite-0.6.0/MonetDBLite/DESCRIPTION | 28 MonetDBLite-0.6.0/MonetDBLite/MD5 | 707 MonetDBLite-0.6.0/MonetDBLite/R/dbi.R | 41 MonetDBLite-0.6.0/MonetDBLite/R/dplyr.R | 10 MonetDBLite-0.6.0/MonetDBLite/R/embedded.R | 13 MonetDBLite-0.6.0/MonetDBLite/README.md | 9 MonetDBLite-0.6.0/MonetDBLite/src/Makevars | 373 MonetDBLite-0.6.0/MonetDBLite/src/embeddedr/converters.c.h | 54 MonetDBLite-0.6.0/MonetDBLite/src/embeddedr/embeddedr.c | 6 MonetDBLite-0.6.0/MonetDBLite/src/embeddedr/embeddedr.h | 2 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/appveyor.yml | 1 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/hgimport.sh | 2 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/common/stream.c | 596 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/common/stream.h | 100 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/common/strptime.c | 4 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| 54 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal.h | 12 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_atom.c | 115 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_atom.h | 9 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_builder.c | 17 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_builder.h | 2 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_client.c | 53 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_client.h | 25 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_dataflow.c | 20 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_dataflow.h | 2 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_errors.h | 6 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_exception.c | 113 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_exception.h | 15 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/mal/mal/mal_function.c | 130 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MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/bat/bat_storage.c | 566 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/bat/bat_storage.h | 2 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/bat/bat_table.c | 77 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/bat/bat_table.h | 2 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/bat/bat_utils.c | 41 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/bat/bat_utils.h | 4 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/bat/nop_logger.h | 2 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/bat/res_table.c | 2 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/bat/res_table.h | 2 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/sql_catalog.c | 2 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/sql_storage.h | 22 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/store.c | 425 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/store_dependency.c | 63 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/store_dependency.h | 2 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/store_sequence.c | 11 MonetDBLite-0.6.0/MonetDBLite/src/monetdblite/src/sql/storage/store_sequence.h | 4 MonetDBLite-0.6.0/MonetDBLite/tests/testthat/oldfarm-0.5.0.zip |only MonetDBLite-0.6.0/MonetDBLite/tests/testthat/oldfarm-0.5.1.zip |only MonetDBLite-0.6.0/MonetDBLite/tests/testthat/test_01_lowlevel.R | 2 MonetDBLite-0.6.0/MonetDBLite/tests/testthat/test_02_dbi.R | 28 MonetDBLite-0.6.0/MonetDBLite/tests/testthat/test_03_dbitest.R | 2 MonetDBLite-0.6.0/MonetDBLite/tests/testthat/test_07_oldfarm.R |only 357 files changed, 23554 insertions(+), 19812 deletions(-)
Title: Producing and Reproducing Results
Description: A system for embedded scientific computing and reproducible research with R.
The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange
with R. This provides a reliable and scalable foundation for statistical services or
building R web applications. The OpenCPU server runs either as a single-user development
server within the interactive R session, or as a multi-user Linux stack based on Apache2.
The entire system is fully open source and permissively licensed. The OpenCPU website
has detailed documentation and example apps.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between opencpu versions 2.0.5 dated 2017-10-12 and 2.0.8 dated 2018-07-27
opencpu-2.0.5/opencpu/R/httpget_package_demo.R |only opencpu-2.0.5/opencpu/R/httpget_package_doc.R |only opencpu-2.0.5/opencpu/R/httpget_package_www.R |only opencpu-2.0.8/opencpu/DESCRIPTION | 21 ++++----- opencpu-2.0.8/opencpu/MD5 | 45 +++++++++---------- opencpu-2.0.8/opencpu/NEWS | 20 ++++++++ opencpu-2.0.8/opencpu/R/apps.R | 6 +- opencpu-2.0.8/opencpu/R/github.R | 19 +++----- opencpu-2.0.8/opencpu/R/httpget.R | 2 opencpu-2.0.8/opencpu/R/httpget_doc.R | 10 ++-- opencpu-2.0.8/opencpu/R/httpget_package_file.R | 10 +++- opencpu-2.0.8/opencpu/R/httpget_package_man.R | 42 +++++++++--------- opencpu-2.0.8/opencpu/R/httpget_session_files.R | 6 +- opencpu-2.0.8/opencpu/R/httpget_static.R | 20 ++++---- opencpu-2.0.8/opencpu/R/rapache.R | 4 - opencpu-2.0.8/opencpu/R/request.R | 53 +++++++++++------------ opencpu-2.0.8/opencpu/R/script.R | 1 opencpu-2.0.8/opencpu/R/secret.R | 15 ++++++ opencpu-2.0.8/opencpu/R/serve.R | 39 ++++++++-------- opencpu-2.0.8/opencpu/R/utils.R | 7 +++ opencpu-2.0.8/opencpu/build/vignette.rds |binary opencpu-2.0.8/opencpu/inst/config/defaults.conf | 2 opencpu-2.0.8/opencpu/inst/doc/opencpu-paper.pdf |binary opencpu-2.0.8/opencpu/man/apps.Rd | 1 opencpu-2.0.8/opencpu/man/server.Rd | 1 25 files changed, 186 insertions(+), 138 deletions(-)
Title: Compare Baseline Characteristics Between Groups
Description: Compare baseline characteristics between two or more groups. The variables being compared can be factor and numeric variables. The function will automatically judge the type and distribution of the variables, and make statistical description and bivariate analysis.
Author: Zhongheng Zhang,
Sir Run-Run Shaw hospital,
Zhejiang university school of medicine
Maintainer: Zhongheng Zhang <zh_zhang1984@zju.edu.cn>
Diff between CBCgrps versions 2.2 dated 2018-07-21 and 2.3 dated 2018-07-27
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/multigrps.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Analyzing Replicated ChIP Sequencing Data Using Quasi-Likelihood
Description: Identify peaks in ChIP-seq data with biological replicates using a one-sided quasi-likelihood ratio test in quasi-Poisson or quasi-negative binomial models.
Author: Emily Goren [aut, cre],
Steve Lund [aut] (The author of the QuasiSeq package, from which all
functions were modified to produce this package.),
Long Qu [aut] (The author of the QuasiSeq package, from which all
functions were modified to produce this package.),
Ian Marschner [aut] (The author of glm2::glm.fit2, which was modified
slightly leading to glm.fit3 in this package.),
Daniel Gerhard [aut] (The author of mcprofile::orglm.fit, which was
modified slightly and used under the same name in this package.),
R Core Team [aut] (The author of stats::glm.fit, which was modified
slightly leading to glm.fit3 in this package.)
Maintainer: Emily Goren <emily.goren@gmail.com>
Diff between BinQuasi versions 0.1-5 dated 2018-06-21 and 0.1-6 dated 2018-07-27
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/NBDev.R | 7 +++++-- R/PoisDev.R | 8 ++++++-- README.md | 19 +++++++++++++++++++ build/vignette.rds |binary inst/doc/BinQuasi.R | 15 +++++++++++++++ inst/doc/BinQuasi.Rmd | 20 ++++++++++++++++++++ inst/doc/BinQuasi.html | 48 +++++++++++++++++++++++++++++++++++------------- vignettes/BinQuasi.Rmd | 20 ++++++++++++++++++++ 10 files changed, 133 insertions(+), 30 deletions(-)
Title: Polygon Clipping
Description: R port of Angus Johnson's open source library Clipper. Performs polygon clipping operations (intersection, union, set minus, set difference) for polygonal regions of arbitrary complexity, including holes. Computes offset polygons (spatial buffer zones, morphological dilations, Minkowski dilations) for polygonal regions and polygonal lines. Computes Minkowski Sum of general polygons. There is a function for removing self-intersections from polygon data.
Author: Angus Johnson [aut] (C++ original,
http://www.angusj.com/delphi/clipper.php),
Adrian Baddeley [aut, trl, cre],
Kurt Hornik [ctb],
Brian D. Ripley [ctb],
Elliott Sales de Andrade [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between polyclip versions 1.9-0 dated 2018-06-14 and 1.9-1 dated 2018-07-27
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 7 +++++++ configure | 48 ++++++++++++++++++++++++------------------------ configure.ac | 6 +++--- 5 files changed, 42 insertions(+), 35 deletions(-)
Title: Frequent Contiguous Sequential Pattern Mining of Text
Description: Mines contiguous sequential patterns in text.
Author: Anantha Janakiraman
Maintainer: Anantha Janakiraman <anantharaman.j@gmail.com>
Diff between CSeqpat versions 0.1.1 dated 2018-07-02 and 0.1.2 dated 2018-07-27
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NAMESPACE | 7 ++++++- R/CSeqpat.R | 48 +++++++++++++++++++++++++++++++++++++----------- man/CSeqpat.Rd | 20 +++++++++++++++++--- 5 files changed, 67 insertions(+), 22 deletions(-)