Title: Regression of Network Responses
Description: Regress network responses (both directed and undirected) onto covariates of interest that may be actor-, relation-, or network-valued. In addition, compute principled variance estimates of the coefficients assuming that the errors are jointly exchangeable. Missing data is accommodated. Additionally implements building and inversion of covariance matrices under joint exchangeability, and generates random covariance matrices from this class. For more detail on methods, see Marrs, Fosdick, and McCormick (2017) <arXiv:1701.05530>.
Author: Frank W. Marrs [aut, cre],
Bailey K. Fosdick [aut],
Tyler H. McCormick [aut]
Maintainer: Frank W. Marrs <frank.marrs@colostate.edu>
Diff between netregR versions 1.0.0 dated 2018-07-25 and 1.0.1 dated 2018-08-01
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- R/lmnet.R | 8 ++++---- R/matrix_ops.R | 12 ++++++------ R/vnet.R | 2 +- inst/doc/netregR_vignette.R | 6 +++--- inst/doc/netregR_vignette.Rmd | 30 +++++++++++++++++------------- inst/doc/netregR_vignette.html | 20 ++++++++++---------- man/build_exchangeable_matrix.Rd | 4 ++-- man/invert_exchangeable_matrix.Rd | 4 ++-- man/lmnet.Rd | 6 ++++-- man/model.matrix.lmnet.Rd | 2 +- man/rphi.Rd | 4 ++-- man/vnet.Rd | 2 +- vignettes/bibliography.bib | 6 +++--- vignettes/netregR_vignette.Rmd | 30 +++++++++++++++++------------- 16 files changed, 92 insertions(+), 82 deletions(-)
Title: Semiparametric Estimating Functions
Description: Functions for fitting semiparametric regression models for
panel count survival data. An overview of the package can be found
in Wang and Yan (2011) <doi:10.1016/j.cmpb.2010.10.005> and
Chiou et al. (2018) <doi:10.1111/insr.12271>.
Author: Sy Han (Steven) Chiou [aut, cre],
Xiaojing Wang [aut],
Jun Yan [aut]
Maintainer: Sy Han (Steven) Chiou <schiou@utdallas.edu>
Diff between spef versions 1.0-7 dated 2018-02-26 and 1.0.8 dated 2018-08-01
spef-1.0-7/spef/ChangeLog |only spef-1.0.8/spef/DESCRIPTION | 30 ++-- spef-1.0.8/spef/MD5 | 33 ++-- spef-1.0.8/spef/NAMESPACE | 86 ++++++++---- spef-1.0.8/spef/R/PanelSurv.R | 48 +++++- spef-1.0.8/spef/R/ispline.R | 1 spef-1.0.8/spef/R/panelReg.R | 189 +++++++++++++++++++++++++- spef-1.0.8/spef/R/plot.R | 23 +++ spef-1.0.8/spef/R/spef_data.R |only spef-1.0.8/spef/R/spef_pkg.R |only spef-1.0.8/spef/inst |only spef-1.0.8/spef/man/PanelSurv.Rd | 54 +++---- spef-1.0.8/spef/man/blaTum.Rd | 85 +++++------- spef-1.0.8/spef/man/bladTumor.Rd | 88 +++++------- spef-1.0.8/spef/man/panelReg.Rd | 233 +++++++++++++++------------------ spef-1.0.8/spef/man/panelReg.object.Rd | 27 ++- spef-1.0.8/spef/man/plot.panelReg.Rd | 37 ++--- spef-1.0.8/spef/man/skiTum.Rd | 50 +++---- spef-1.0.8/spef/man/skinTumor.Rd | 69 +++++---- spef-1.0.8/spef/man/spef-package.Rd |only 20 files changed, 642 insertions(+), 411 deletions(-)
Title: Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and
Destruction Rate Modelling
Description: Distributions that are typically used for exposure rating in
general insurance, in particular to price reinsurance contracts.
The vignettes show code snippets to fit the distribution to
empirical data.
Author: Giorgio Spedicato [aut, cre],
Christophe Dutang [aut],
Markus Gesmann [ctb]
Maintainer: Giorgio Spedicato <spedicato_giorgio@yahoo.it>
Diff between mbbefd versions 0.8.8.2 dated 2018-05-10 and 0.8.8.3 dated 2018-08-01
ChangeLog | 41 ++++++++++++++++++++++++++---------- DESCRIPTION | 10 +++++--- MD5 | 19 ++++++++-------- R/distr-mbbefdR-1stparam.R | 14 ++---------- R/fitDR.R | 9 +++++++ build/partial.rdb |only build/vignette.rds |binary inst/doc/Introduction_to_mbbefd.pdf |binary inst/doc/test-beta.html | 3 ++ man/mbbefd-package.Rd | 36 +++++++++++++++++-------------- man/mbbefdDistribution.Rd | 6 ++--- 11 files changed, 83 insertions(+), 55 deletions(-)
Title: Seamless Integration Between R and 'Julia'
Description: Provides an R interface to 'Julia',
which is a high-level, high-performance dynamic programming language
for numerical computing, see <https://julialang.org/> for more information.
It provides a high-level interface as well as a low-level interface.
Using the high level interface, you could call any 'Julia' function just like
any R function with automatic type conversion. Using the low level interface,
you could deal with C-level SEXP directly while enjoying the convenience of
using a high-level programming language like 'Julia'.
Author: Changcheng Li [aut, cre],
Randy Lai [ctb],
Dmitri Grominski [ctb],
Nagi Teramo [ctb]
Maintainer: Changcheng Li <cxl508@psu.edu>
Diff between JuliaCall versions 0.14.0 dated 2018-07-05 and 0.15.0 dated 2018-08-01
JuliaCall-0.14.0/JuliaCall/inst/julia/display/Rjulia.jl |only JuliaCall-0.14.0/JuliaCall/inst/julia/display/RmdJulia1.jl |only JuliaCall-0.15.0/JuliaCall/DESCRIPTION | 12 - JuliaCall-0.15.0/JuliaCall/MD5 | 61 ++--- JuliaCall-0.15.0/JuliaCall/NAMESPACE | 5 JuliaCall-0.15.0/JuliaCall/NEWS.md | 28 ++ JuliaCall-0.15.0/JuliaCall/R/JuliaObject.R | 101 ++++++--- JuliaCall-0.15.0/JuliaCall/R/aaa.R | 4 JuliaCall-0.15.0/JuliaCall/R/dispatch.R | 70 +++--- JuliaCall-0.15.0/JuliaCall/R/interface.R | 43 ++-- JuliaCall-0.15.0/JuliaCall/R/zzz.R | 5 JuliaCall-0.15.0/JuliaCall/README.md | 4 JuliaCall-0.15.0/JuliaCall/build/vignette.rds |binary JuliaCall-0.15.0/JuliaCall/inst/doc/JuliaCall_in_Jupyter_R_Notebook.html | 4 JuliaCall-0.15.0/JuliaCall/inst/doc/Julia_in_RMarkdown.html | 4 JuliaCall-0.15.0/JuliaCall/inst/julia/JuliaObject.jl | 11 - JuliaCall-0.15.0/JuliaCall/inst/julia/asR.jl | 6 JuliaCall-0.15.0/JuliaCall/inst/julia/dispatch.jl | 57 ++++- JuliaCall-0.15.0/JuliaCall/inst/julia/display/IRjulia.jl | 56 +++++ JuliaCall-0.15.0/JuliaCall/inst/julia/display/RmdJulia.jl | 17 + JuliaCall-0.15.0/JuliaCall/inst/julia/display/basic.jl | 23 +- JuliaCall-0.15.0/JuliaCall/inst/julia/display/plotsViewer.jl | 5 JuliaCall-0.15.0/JuliaCall/inst/julia/install_dependency.jl | 34 ++- JuliaCall-0.15.0/JuliaCall/inst/julia/interface1.jl |only JuliaCall-0.15.0/JuliaCall/inst/julia/libjulia.jl | 14 + JuliaCall-0.15.0/JuliaCall/inst/julia/setup.jl | 104 +++++++--- JuliaCall-0.15.0/JuliaCall/man/JuliaObject.Rd | 4 JuliaCall-0.15.0/JuliaCall/src/JuliaCall.cpp | 4 JuliaCall-0.15.0/JuliaCall/src/libjulia.cpp | 4 JuliaCall-0.15.0/JuliaCall/tests/testthat/test_AD.R | 2 JuliaCall-0.15.0/JuliaCall/tests/testthat/test_JuliaObject.R | 2 JuliaCall-0.15.0/JuliaCall/tests/testthat/test_dispatch.R | 2 JuliaCall-0.15.0/JuliaCall/tests/testthat/test_julia_package.R | 2 33 files changed, 483 insertions(+), 205 deletions(-)
Title: Urban Dictionary API Client
Description: A client for the Urban Dictionary <http://www.urbandictionary.com/> API.
Author: Oliver Keyes [aut, cre]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between udapi versions 0.1.1 dated 2018-04-08 and 0.1.2 dated 2018-08-01
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 4 ++++ R/query.R | 14 ++------------ README.md | 1 - man/get_tags.Rd | 5 ----- man/get_term.Rd | 3 +-- 7 files changed, 17 insertions(+), 30 deletions(-)
Title: Implementation of Random Variables
Description: Implements random variables by means of S4 classes and methods.
Author: Matthias Kohl [cre, cph, aut],
Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RandVar versions 1.0.1 dated 2017-04-23 and 1.1.0 dated 2018-08-01
DESCRIPTION | 21 ++-- MD5 | 16 +-- R/util.R | 2 build/vignette.rds |binary inst/NEWS | 9 + inst/TOBEDONE | 2 inst/doc/RandVar.pdf |binary man/0RandVar-package.Rd | 6 - tests/tests.Rout.save | 219 ++++++++++++++++++++---------------------------- 9 files changed, 125 insertions(+), 150 deletions(-)
Title: Read EPUB File Metadata and Text
Description: Provides functions supporting the reading and parsing of internal e-book content from EPUB files.
E-book formatting is non-standard enough across all literature that no function can curate parsed e-book content across an arbitrary collection of e-books,
in completely general form, resulting in a singular, consistently formatted output containing all the same variables.
EPUB file parsing functionality in this package is intended for relatively general application to arbitrary e-books.
However, poorly formatted e-books or e-books with highly uncommon formatting may not work with this package.
Text is read 'as is'. Additional text cleaning should be performed by the user at their discretion, such as with functions from packages like 'tm' or 'qdap'.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <mfleonawicz@alaska.edu>
Diff between epubr versions 0.4.0 dated 2018-05-30 and 0.4.1 dated 2018-08-01
DESCRIPTION | 13 +-- MD5 | 26 +++--- NAMESPACE | 1 NEWS.md | 14 ++- R/epub.R |only R/epubr.R | 193 --------------------------------------------- R/helpers.R | 37 +++++++- README.md | 77 ++++++++++++----- build/vignette.rds |binary inst/doc/epubr.Rmd | 14 +-- inst/doc/epubr.html | 52 +++++------- man/epub.Rd | 17 ++- man/epub_head.Rd |only tests/testthat/test-epub.R | 27 +++++- vignettes/epubr.Rmd | 14 +-- 15 files changed, 190 insertions(+), 295 deletions(-)
Title: Multivariate Variance Components Tests for Multilevel Data
Description: Permutation tests for variance components for 2-level, 3-level and 4-level data with univariate or multivariate responses.
Author: Denis Larocque
Maintainer: Denis Larocque <denis.larocque@hec.ca>
Diff between mvctm versions 1.1 dated 2017-03-08 and 1.2 dated 2018-08-01
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- man/mvctm-package.Rd | 2 +- man/mvctm.Rd | 2 +- man/permcluster.Rd | 2 +- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Discrete Time Survival Analysis
Description: Provides data transformations, estimation utilities,
predictive evaluation measures and simulation functions for discrete time
survival analysis.
Author: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de> and Matthias Schmid <matthias.schmid@imbie.uni-bonn.de>
Maintainer: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de>
Diff between discSurv versions 1.3.1 dated 2018-04-12 and 1.3.4 dated 2018-08-01
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/DiscSurvEvaluation.R | 6 ++++-- man/dataLongSubDist.Rd | 2 +- man/discSurv-package.Rd | 4 ++-- man/estMargProb.Rd | 2 +- man/estSurv.Rd | 2 +- man/tprUnoShort.Rd | 1 - 8 files changed, 20 insertions(+), 19 deletions(-)
Title: Wrap R Tools for Debugging and Parametric Programming
Description: Tools for writing and debugging R code. Provides:
'let()'
(converts non-standard evaluation interfaces to parametric standard
evaluation interfaces),
'%.>%' dot-pipe (an 'S3' configurable pipe),
'build_frame()'/'draw_frame()' ('data.frame' example tools),
'qc()' (quoting concatenate),
':=' (named map builder),
'DebugFnW()' (capture function context on error for debugging),
and more.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between wrapr versions 1.5.1 dated 2018-07-08 and 1.6.0 dated 2018-08-01
DESCRIPTION | 12 +- MD5 | 101 +++++++++--------- NAMESPACE | 1 NEWS.md | 7 + R/Reduce.R | 2 R/bpipe.R | 99 +++++++++++++++--- R/cf.R | 214 ++++++++++++++++++++++------------------ R/coalese_op.R | 6 - R/lambda.R | 4 R/match_order.R | 6 - R/partition_tables.R | 33 ++++-- R/qc.R | 2 R/uniques.R | 2 README.md | 10 - inst/doc/CornerCases.html | 4 inst/doc/DebugFnW.html | 6 - inst/doc/FrameTools.Rmd | 2 inst/doc/FrameTools.html | 6 - inst/doc/Named_Arguments.html | 4 inst/doc/SubstitutionModes.html | 4 inst/doc/dot_pipe.html | 4 inst/doc/lambda.html | 4 inst/doc/let.html | 4 inst/doc/named_map_builder.html | 4 inst/doc/wrapr_applicable.R | 10 - inst/doc/wrapr_applicable.Rmd | 15 +- inst/doc/wrapr_applicable.html | 18 +-- man/apply_left.default.Rd | 6 - man/apply_right.Rd | 6 - man/apply_right.default.Rd | 29 +++-- man/apply_right_S4.Rd |only man/build_frame.Rd | 2 man/coalesce.Rd | 1 man/dot_arrow.Rd | 4 man/draw_frame.Rd | 8 - man/execute_parallel.Rd | 8 - man/grepdf.Rd | 4 man/invert_perm.Rd | 4 man/lambda.Rd | 2 man/makeFunction_se.Rd | 2 man/map_to_char.Rd | 3 man/match_order.Rd | 2 man/mk_tmp_name_source.Rd | 4 man/partition_tables.Rd | 10 + man/pipe_impl.Rd | 3 man/qc.Rd | 2 man/qchar_frame.Rd | 4 man/reduceexpand.Rd | 2 man/uniques.Rd | 2 tests/testthat/test_coalesce.R | 3 vignettes/FrameTools.Rmd | 2 vignettes/wrapr_applicable.Rmd | 15 +- 52 files changed, 425 insertions(+), 287 deletions(-)
Title: Relational Query Generator for Data Manipulation at Scale
Description: A piped query generator based on Edgar F. Codd's relational
algebra, and on production experience using 'SQL' and 'dplyr' at big data
scale. The design represents an attempt to make 'SQL' more teachable by
denoting composition by a sequential pipeline notation instead of nested
queries or functions. The implementation delivers reliable high
performance data processing on large data systems such as 'Spark',
databases, and 'data.table'. Package features include: data processing trees
or pipelines as observable objects (able to report both columns
produced and columns used), optimized 'SQL' generation as an explicit
user visible modeling step, explicit query reasoning and checking.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rquery versions 0.5.0 dated 2018-06-18 and 0.6.1 dated 2018-08-01
rquery-0.5.0/rquery/R/double_clutch.R |only rquery-0.5.0/rquery/R/old_dbi_fns.R |only rquery-0.5.0/rquery/man/dbi_colnames.Rd |only rquery-0.5.0/rquery/man/dbi_coltypes.Rd |only rquery-0.5.0/rquery/man/dbi_connection_advice.Rd |only rquery-0.5.0/rquery/man/dbi_connection_name.Rd |only rquery-0.5.0/rquery/man/dbi_connection_tests.Rd |only rquery-0.5.0/rquery/man/dbi_copy_to.Rd |only rquery-0.5.0/rquery/man/dbi_nrow.Rd |only rquery-0.5.0/rquery/man/dbi_remove_table.Rd |only rquery-0.5.0/rquery/man/dbi_table_exists.Rd |only rquery-0.5.0/rquery/man/doubleapply.Rd |only rquery-0.6.1/rquery/DESCRIPTION | 12 rquery-0.6.1/rquery/MD5 | 214 +++++------- rquery-0.6.1/rquery/NAMESPACE | 13 rquery-0.6.1/rquery/NEWS.md | 15 rquery-0.6.1/rquery/R/affine_transform.R |only rquery-0.6.1/rquery/R/assign_slice.R | 19 - rquery-0.6.1/rquery/R/complete_design.R | 2 rquery-0.6.1/rquery/R/db_info.R | 74 +++- rquery-0.6.1/rquery/R/db_ops.R | 45 +- rquery-0.6.1/rquery/R/drop_columns.R | 12 rquery-0.6.1/rquery/R/ex_data_frame.R | 9 rquery-0.6.1/rquery/R/extend.R | 88 +++- rquery-0.6.1/rquery/R/if_else_block.R | 10 rquery-0.6.1/rquery/R/join_controller.R | 16 rquery-0.6.1/rquery/R/map_cols.R | 2 rquery-0.6.1/rquery/R/materialize.R | 20 - rquery-0.6.1/rquery/R/natural_join.R | 16 rquery-0.6.1/rquery/R/non_sql_node.R | 14 rquery-0.6.1/rquery/R/normalize.R | 4 rquery-0.6.1/rquery/R/null_replace.R | 12 rquery-0.6.1/rquery/R/order_by.R | 20 - rquery-0.6.1/rquery/R/ordered_select_rows.R | 7 rquery-0.6.1/rquery/R/pre_sql.R | 40 +- rquery-0.6.1/rquery/R/project.R | 62 ++- rquery-0.6.1/rquery/R/quantile.R | 4 rquery-0.6.1/rquery/R/relop.R | 2 rquery-0.6.1/rquery/R/rename.R | 12 rquery-0.6.1/rquery/R/rlook.R |only rquery-0.6.1/rquery/R/rsummary.R | 2 rquery-0.6.1/rquery/R/select_columns.R | 9 rquery-0.6.1/rquery/R/select_rows.R | 6 rquery-0.6.1/rquery/R/set_indicator.R | 14 rquery-0.6.1/rquery/R/sql_node.R | 12 rquery-0.6.1/rquery/R/table_source.R | 37 +- rquery-0.6.1/rquery/R/theta_join.R | 18 - rquery-0.6.1/rquery/R/tokenize_for_sql.R | 64 +++ rquery-0.6.1/rquery/R/union_all.R | 13 rquery-0.6.1/rquery/R/utils.R | 8 rquery-0.6.1/rquery/R/work_with_NULLs.R | 2 rquery-0.6.1/rquery/README.md | 59 +-- rquery-0.6.1/rquery/inst/doc/AssigmentPartitioner.html | 30 - rquery-0.6.1/rquery/inst/doc/PipeableSQL.html | 37 +- rquery-0.6.1/rquery/inst/doc/QueryGeneration.html | 27 - rquery-0.6.1/rquery/inst/doc/rquery_intro.html | 71 ++- rquery-0.6.1/rquery/man/affine_transform.Rd |only rquery-0.6.1/rquery/man/apply_right.relop.Rd | 4 rquery-0.6.1/rquery/man/assign_slice.Rd | 16 rquery-0.6.1/rquery/man/build_join_plan.Rd | 4 rquery-0.6.1/rquery/man/commencify.Rd | 29 + rquery-0.6.1/rquery/man/complete_design.Rd | 4 rquery-0.6.1/rquery/man/db_td.Rd | 10 rquery-0.6.1/rquery/man/describe_tables.Rd | 5 rquery-0.6.1/rquery/man/drop_columns.Rd | 4 rquery-0.6.1/rquery/man/execute.Rd | 4 rquery-0.6.1/rquery/man/extend_nse.Rd | 6 rquery-0.6.1/rquery/man/extend_se.Rd | 6 rquery-0.6.1/rquery/man/format_node.Rd | 2 rquery-0.6.1/rquery/man/getDBOption.Rd | 4 rquery-0.6.1/rquery/man/graph_join_plan.Rd | 5 rquery-0.6.1/rquery/man/if_else_block.Rd | 2 rquery-0.6.1/rquery/man/if_else_op.Rd | 5 rquery-0.6.1/rquery/man/inspect_join_plan.Rd | 2 rquery-0.6.1/rquery/man/key_inspector_all_cols.Rd | 4 rquery-0.6.1/rquery/man/local_td.Rd | 7 rquery-0.6.1/rquery/man/map_column_values.Rd | 2 rquery-0.6.1/rquery/man/mark_null_cols.Rd | 2 rquery-0.6.1/rquery/man/materialize.Rd | 10 rquery-0.6.1/rquery/man/materialize_sql.Rd | 2 rquery-0.6.1/rquery/man/mk_td.Rd | 11 rquery-0.6.1/rquery/man/natural_join.Rd | 8 rquery-0.6.1/rquery/man/non_sql_node.Rd | 9 rquery-0.6.1/rquery/man/normalize_cols.Rd | 4 rquery-0.6.1/rquery/man/null_replace.Rd | 5 rquery-0.6.1/rquery/man/orderby.Rd | 7 rquery-0.6.1/rquery/man/pick_top_k.Rd | 4 rquery-0.6.1/rquery/man/quantile_cols.Rd | 4 rquery-0.6.1/rquery/man/quantile_node.Rd | 4 rquery-0.6.1/rquery/man/quote_table_name.Rd |only rquery-0.6.1/rquery/man/reexports.Rd | 12 rquery-0.6.1/rquery/man/rename_columns.Rd | 4 rquery-0.6.1/rquery/man/rq_colnames.Rd | 6 rquery-0.6.1/rquery/man/rq_coltypes.Rd | 7 rquery-0.6.1/rquery/man/rq_connection_advice.Rd | 2 rquery-0.6.1/rquery/man/rq_connection_name.Rd | 4 rquery-0.6.1/rquery/man/rq_connection_tests.Rd | 2 rquery-0.6.1/rquery/man/rq_execute.Rd | 4 rquery-0.6.1/rquery/man/rq_get_query.Rd | 4 rquery-0.6.1/rquery/man/rq_nrow.Rd | 2 rquery-0.6.1/rquery/man/rquery_apply_to_data_frame.Rd | 4 rquery-0.6.1/rquery/man/rquery_db_info.Rd | 4 rquery-0.6.1/rquery/man/rstr.Rd |only rquery-0.6.1/rquery/man/rsummary.Rd | 2 rquery-0.6.1/rquery/man/select_columns.Rd | 4 rquery-0.6.1/rquery/man/select_rows_nse.Rd | 2 rquery-0.6.1/rquery/man/set_indicator.Rd | 6 rquery-0.6.1/rquery/man/sql_node.Rd | 5 rquery-0.6.1/rquery/man/theta_join_nse.Rd | 6 rquery-0.6.1/rquery/man/theta_join_se.Rd | 6 rquery-0.6.1/rquery/man/to_sql.Rd | 5 rquery-0.6.1/rquery/man/tokenize_for_SQL.Rd | 3 rquery-0.6.1/rquery/man/unionall.Rd | 4 rquery-0.6.1/rquery/tests/testthat/test_col_name_map.R |only rquery-0.6.1/rquery/tests/testthat/test_extend_partition.R | 11 rquery-0.6.1/rquery/tests/testthat/test_project_narrowing.R |only rquery-0.6.1/rquery/tests/testthat/test_select_narrowing.R |only rquery-0.6.1/rquery/tools/pipe_diagram.png |binary 118 files changed, 889 insertions(+), 568 deletions(-)
Title: Datasets for Spatial Analysis
Description: Diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis.
It includes R data of class sf (defined by the package 'sf'), Spatial ('sp'), and nb ('spdep').
Unlike other spatial data packages such as 'rnaturalearth' and 'maps',
it also contains data stored in a range of file formats including GeoJSON, ESRI Shapefile and GeoPackage.
Some of the datasets are designed to illustrate specific analysis techniques.
cycle_hire() and cycle_hire_osm(), for example, is designed to illustrate point pattern analysis techniques.
Author: Roger Bivand [aut] (<https://orcid.org/0000-0003-2392-6140>),
Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>),
Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>),
Mark Monmonier [ctb] (author of the state.vbm dataset),
Greg Snow [ctb] (author of the state.vbm dataset)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between spData versions 0.2.9.0 dated 2018-06-17 and 0.2.9.3 dated 2018-08-01
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- data/nc.sids.rda |binary data/world.rda |binary inst/shapes/world.dbf |binary inst/shapes/world.gpkg |binary inst/shapes/world.shp |binary inst/shapes/world.shx |binary 8 files changed, 11 insertions(+), 11 deletions(-)
Title: Colour Vision Models
Description: Colour vision models, colour spaces and colour thresholds. Provides flexibility to build user-defined colour vision models for n number of photoreceptor types. Also includes Vorobyev & Osorio (1998) Receptor Noise Limited models, Chittka (1992) colour hexagon, and Endler & Mielke (2005) model. Models have been extended to accept any number of photoreceptor types.
Author: Felipe M. Gawryszewski
Maintainer: Felipe Malheiros Gawrysewski <f.gawry@gmail.com>
Diff between colourvision versions 2.0.1 dated 2018-05-10 and 2.0.2 dated 2018-08-01
DESCRIPTION | 8 +-- MD5 | 32 +++++++------- NEWS | 5 ++ R/colourvision_package.R | 8 +-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 8 +-- inst/doc/colourvision-vignette.R | 2 inst/doc/colourvision-vignette.Rmd | 30 ++++++------- inst/doc/colourvision-vignette.html | 79 ++++++++++++++++++------------------ man/CTTKhexagon3D.Rd | 2 man/CTTKmodel.Rd | 6 +- man/GENmodel.Rd | 8 ++- man/RNLmodel.Rd | 2 man/colourvision-package.Rd | 2 vignettes/MSref.bib | 13 +++-- vignettes/colourvision-vignette.Rmd | 30 ++++++------- 17 files changed, 122 insertions(+), 113 deletions(-)
Title: Directly Extracts Complete CANSIM Data Tables
Description: Extract CANSIM (Statistics Canada) tables and transform them into readily usable data in panel (wide) format. It can also extract more than one table at a time and produce the resulting merge by time period and geographical region.
Author: Marco Lugo <marco.lugo.rodriguez@umontreal.ca>
Maintainer: Marco Lugo <marco.lugo.rodriguez@umontreal.ca>
Diff between CANSIM2R versions 1.13.1 dated 2018-07-25 and 1.14.1 dated 2018-08-01
DESCRIPTION | 11 +++++------ MD5 | 6 ++++-- NAMESPACE | 1 + R/searchLabels.r |only man/searchLabels.Rd |only 5 files changed, 10 insertions(+), 8 deletions(-)
Title: Data Validation Infrastructure
Description: Declare data validation rules and data quality indicators; confront
data with them and analyze or visualize the results. The package supports
rules that are per-field, in-record, cross-record or cross-dataset. Rules
can be automatically analyzed for rule type and connectivity.
Author: Mark van der Loo [cre, aut],
Edwin de Jonge [aut],
Paul Hsieh [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between validate versions 0.2.5 dated 2018-06-22 and 0.2.6 dated 2018-08-01
validate-0.2.5/validate/man/created-set-expressionset-POSIXct-method.Rd |only validate-0.2.5/validate/man/created-set-rule-POSIXct-method.Rd |only validate-0.2.5/validate/man/created-set.Rd |only validate-0.2.5/validate/man/description-set-expressionset-character-method.Rd |only validate-0.2.5/validate/man/description-set-rule-character-method.Rd |only validate-0.2.5/validate/man/description-set.Rd |only validate-0.2.5/validate/man/label-set-expressionset-character-method.Rd |only validate-0.2.5/validate/man/label-set-rule-character-method.Rd |only validate-0.2.5/validate/man/label-set.Rd |only validate-0.2.5/validate/man/names-expressionset-method.Rd |only validate-0.2.5/validate/man/names-set-expressionset-character-method.Rd |only validate-0.2.5/validate/man/names-set-rule-character-method.Rd |only validate-0.2.5/validate/man/origin-set-expressionset-character-method.Rd |only validate-0.2.5/validate/man/origin-set-rule-character-method.Rd |only validate-0.2.5/validate/man/origin-set.Rd |only validate-0.2.6/validate/DESCRIPTION | 6 validate-0.2.6/validate/MD5 | 149 - validate-0.2.6/validate/NAMESPACE | 8 validate-0.2.6/validate/NEWS | 16 validate-0.2.6/validate/R/barplot.R | 51 validate-0.2.6/validate/R/compare.R | 825 +++++++--- validate-0.2.6/validate/R/confrontation.R | 197 +- validate-0.2.6/validate/R/expressionset.R | 69 validate-0.2.6/validate/R/functions.R | 40 validate-0.2.6/validate/R/indicator.R | 2 validate-0.2.6/validate/R/parse.R | 27 validate-0.2.6/validate/R/retailers.R | 9 validate-0.2.6/validate/R/rule.R | 160 - validate-0.2.6/validate/R/validate_pkg.R | 7 validate-0.2.6/validate/R/validator.R | 143 + validate-0.2.6/validate/build/vignette.rds |binary validate-0.2.6/validate/inst/doc/indicators.Rmd | 2 validate-0.2.6/validate/inst/doc/indicators.html | 8 validate-0.2.6/validate/inst/doc/introduction.html | 34 validate-0.2.6/validate/inst/doc/rule_files.html | 4 validate-0.2.6/validate/man/aggregate-validation-method.Rd | 15 validate-0.2.6/validate/man/all-validation-method.Rd |only validate-0.2.6/validate/man/any-validation-method.Rd |only validate-0.2.6/validate/man/as.data.frame-cellComparison-method.Rd |only validate-0.2.6/validate/man/as.data.frame-confrontation-method.Rd | 16 validate-0.2.6/validate/man/as.data.frame-expressionset-method.Rd | 10 validate-0.2.6/validate/man/as.data.frame-validatorComparison-method.Rd |only validate-0.2.6/validate/man/as.data.frame.Rd | 11 validate-0.2.6/validate/man/barplot-cellComparison-method.Rd |only validate-0.2.6/validate/man/barplot-validation-method.Rd | 19 validate-0.2.6/validate/man/barplot-validatorComparison-method.Rd |only validate-0.2.6/validate/man/cells.Rd | 52 validate-0.2.6/validate/man/check_that.Rd | 11 validate-0.2.6/validate/man/compare.Rd | 89 - validate-0.2.6/validate/man/confront.Rd | 63 validate-0.2.6/validate/man/confrontation-class.Rd | 35 validate-0.2.6/validate/man/created.Rd | 57 validate-0.2.6/validate/man/description.Rd | 61 validate-0.2.6/validate/man/errors.Rd | 9 validate-0.2.6/validate/man/figures |only validate-0.2.6/validate/man/indication-class.Rd | 4 validate-0.2.6/validate/man/label.Rd | 61 validate-0.2.6/validate/man/length.Rd | 7 validate-0.2.6/validate/man/match_cells.Rd | 10 validate-0.2.6/validate/man/meta.Rd | 12 validate-0.2.6/validate/man/names.Rd |only validate-0.2.6/validate/man/origin.Rd | 60 validate-0.2.6/validate/man/plot-cellComparison-method.Rd |only validate-0.2.6/validate/man/plot-validation-method.Rd |only validate-0.2.6/validate/man/plot-validator-method.Rd |only validate-0.2.6/validate/man/plot-validatorComparison-method.Rd |only validate-0.2.6/validate/man/plus-indicator-indicator-method.Rd | 1 validate-0.2.6/validate/man/plus-validator-validator-method.Rd | 5 validate-0.2.6/validate/man/retailers.Rd | 9 validate-0.2.6/validate/man/select.Rd | 7 validate-0.2.6/validate/man/sort-validation-method.Rd | 15 validate-0.2.6/validate/man/syntax.Rd | 18 validate-0.2.6/validate/man/validate-summary.Rd | 44 validate-0.2.6/validate/man/validate.Rd | 5 validate-0.2.6/validate/man/validation-class.Rd | 29 validate-0.2.6/validate/man/validator-class.Rd | 3 validate-0.2.6/validate/man/validator.Rd | 12 validate-0.2.6/validate/man/values.Rd | 17 validate-0.2.6/validate/man/variables.Rd | 26 validate-0.2.6/validate/man/vin.Rd | 14 validate-0.2.6/validate/man/voptions.Rd | 46 validate-0.2.6/validate/tests/testthat/Rplots.pdf |only validate-0.2.6/validate/tests/testthat/testParse.R | 1 validate-0.2.6/validate/tests/testthat/testUtils.R | 28 validate-0.2.6/validate/tests/testthat/test_confrontation.R | 23 validate-0.2.6/validate/tests/testthat/test_methods.R | 5 validate-0.2.6/validate/tests/testthat/test_validator.R | 12 validate-0.2.6/validate/vignettes/indicators.Rmd | 2 88 files changed, 1869 insertions(+), 812 deletions(-)
Title: Advanced Data Analysis of Immune Receptor Repertoires
Description: Platform for the advanced analysis of T cell receptor and
Immunoglobulin repertoires data and visualisation of the analysis results.
Author: Vadim Nazarov
Maintainer: Vadim Nazarov <vdm.nazarov@gmail.com>
Diff between tcR versions 2.2.1.11 dated 2016-04-22 and 2.2.2 dated 2018-08-01
tcR-2.2.1.11/tcR/man/spectratyping.Rd |only tcR-2.2.2/tcR/DESCRIPTION | 12 tcR-2.2.2/tcR/MD5 | 213 ++++----- tcR-2.2.2/tcR/NAMESPACE | 5 tcR-2.2.2/tcR/R/RcppExports.R | 10 tcR-2.2.2/tcR/R/crosses.R | 16 tcR-2.2.2/tcR/R/dataproc.R | 36 + tcR-2.2.2/tcR/R/datatools.R | 36 + tcR-2.2.2/tcR/R/diversity.R | 10 tcR-2.2.2/tcR/R/kmers.R | 11 tcR-2.2.2/tcR/R/onload.R |only tcR-2.2.2/tcR/R/parsing.R | 43 + tcR-2.2.2/tcR/R/plots.R | 571 +++++++++++++++----------- tcR-2.2.2/tcR/R/repdiversity.R | 2 tcR-2.2.2/tcR/R/repoverlap.R | 1 tcR-2.2.2/tcR/R/segments.R | 13 tcR-2.2.2/tcR/R/spectrum.R | 185 ++------ tcR-2.2.2/tcR/README.md | 3 tcR-2.2.2/tcR/build/vignette.rds |binary tcR-2.2.2/tcR/data/twa.rda |binary tcR-2.2.2/tcR/inst/crossanalysis.report.Rmd | 1 tcR-2.2.2/tcR/inst/doc/tcrvignette.Rmd | 2 tcR-2.2.2/tcR/inst/doc/tcrvignette.html | 159 +++++-- tcR-2.2.2/tcR/man/AA_TABLE.Rd | 1 tcR-2.2.2/tcR/man/apply.symm.Rd | 3 tcR-2.2.2/tcR/man/assymetry.Rd | 1 tcR-2.2.2/tcR/man/barcodes.to.reads.Rd | 1 tcR-2.2.2/tcR/man/beta.prob.Rd | 1 tcR-2.2.2/tcR/man/bootstrap.tcr.Rd | 1 tcR-2.2.2/tcR/man/check.distribution.Rd | 1 tcR-2.2.2/tcR/man/clonal.space.homeostasis.Rd | 1 tcR-2.2.2/tcR/man/cloneset.stats.Rd | 1 tcR-2.2.2/tcR/man/codon.variants.Rd | 3 tcR-2.2.2/tcR/man/column.summary.Rd | 1 tcR-2.2.2/tcR/man/contamination.stats.Rd | 1 tcR-2.2.2/tcR/man/convergence.index.Rd | 1 tcR-2.2.2/tcR/man/cosine.sharing.Rd | 3 tcR-2.2.2/tcR/man/cosine.similarity.Rd | 9 tcR-2.2.2/tcR/man/entropy.Rd | 1 tcR-2.2.2/tcR/man/entropy.seg.Rd | 1 tcR-2.2.2/tcR/man/find.clonotypes.Rd | 1 tcR-2.2.2/tcR/man/find.similar.sequences.Rd | 3 tcR-2.2.2/tcR/man/fix.alleles.Rd | 1 tcR-2.2.2/tcR/man/gc.content.Rd | 1 tcR-2.2.2/tcR/man/geneUsage.Rd | 1 tcR-2.2.2/tcR/man/generate.kmers.Rd | 1 tcR-2.2.2/tcR/man/generate.tcr.Rd | 1 tcR-2.2.2/tcR/man/get.all.substrings.Rd | 1 tcR-2.2.2/tcR/man/get.deletions.alpha.Rd | 1 tcR-2.2.2/tcR/man/get.inframes.Rd | 9 tcR-2.2.2/tcR/man/get.kmers.Rd | 1 tcR-2.2.2/tcR/man/gibbs.sampler.Rd | 1 tcR-2.2.2/tcR/man/group.clonotypes.Rd | 1 tcR-2.2.2/tcR/man/has.class.Rd | 1 tcR-2.2.2/tcR/man/intersectClonesets.Rd | 3 tcR-2.2.2/tcR/man/inverse.simpson.Rd | 5 tcR-2.2.2/tcR/man/kmer.profile.Rd | 1 tcR-2.2.2/tcR/man/kmer.table.Rd | 9 tcR-2.2.2/tcR/man/loglikelihood.Rd | 1 tcR-2.2.2/tcR/man/matrixSubgroups.Rd | 1 tcR-2.2.2/tcR/man/matrixdiagcopy.Rd | 1 tcR-2.2.2/tcR/man/mutated.neighbours.Rd | 1 tcR-2.2.2/tcR/man/mutation.network.Rd | 1 tcR-2.2.2/tcR/man/ozScore.Rd | 1 tcR-2.2.2/tcR/man/parse.cloneset.Rd | 1 tcR-2.2.2/tcR/man/parse.folder.Rd | 17 tcR-2.2.2/tcR/man/pca.segments.Rd | 1 tcR-2.2.2/tcR/man/pca2euclid.Rd | 1 tcR-2.2.2/tcR/man/permutDistTest.Rd | 1 tcR-2.2.2/tcR/man/permutedf.Rd | 1 tcR-2.2.2/tcR/man/rarefaction.Rd | 7 tcR-2.2.2/tcR/man/repDiversity.Rd | 1 tcR-2.2.2/tcR/man/repLoad.Rd | 1 tcR-2.2.2/tcR/man/repOverlap.Rd | 2 tcR-2.2.2/tcR/man/repSave.Rd | 1 tcR-2.2.2/tcR/man/resample.Rd | 18 tcR-2.2.2/tcR/man/revcomp.Rd | 3 tcR-2.2.2/tcR/man/reverse.string.Rd | 1 tcR-2.2.2/tcR/man/sample.clones.Rd | 1 tcR-2.2.2/tcR/man/sample2D.Rd | 1 tcR-2.2.2/tcR/man/segments.alphabets.Rd | 53 +- tcR-2.2.2/tcR/man/segments.list.Rd | 3 tcR-2.2.2/tcR/man/set.group.vector.Rd | 3 tcR-2.2.2/tcR/man/set.pb.Rd | 3 tcR-2.2.2/tcR/man/set.people.vector.Rd | 3 tcR-2.2.2/tcR/man/set.rank.Rd | 3 tcR-2.2.2/tcR/man/shared.repertoire.Rd | 3 tcR-2.2.2/tcR/man/spectratype.Rd |only tcR-2.2.2/tcR/man/startmitcr.Rd | 1 tcR-2.2.2/tcR/man/tailbound.proportion.Rd | 7 tcR-2.2.2/tcR/man/top.cross.Rd | 3 tcR-2.2.2/tcR/man/top.fun.Rd | 14 tcR-2.2.2/tcR/man/twinsdata.Rd | 3 tcR-2.2.2/tcR/man/vis.clonal.dynamics.Rd | 1 tcR-2.2.2/tcR/man/vis.clonal.space.Rd | 3 tcR-2.2.2/tcR/man/vis.count.len.Rd | 1 tcR-2.2.2/tcR/man/vis.gene.usage.Rd | 5 tcR-2.2.2/tcR/man/vis.group.boxplot.Rd | 3 tcR-2.2.2/tcR/man/vis.heatmap.Rd | 1 tcR-2.2.2/tcR/man/vis.kmer.histogram.Rd | 1 tcR-2.2.2/tcR/man/vis.logo.Rd | 3 tcR-2.2.2/tcR/man/vis.number.count.Rd | 1 tcR-2.2.2/tcR/man/vis.pca.Rd | 12 tcR-2.2.2/tcR/man/vis.radarlike.Rd | 7 tcR-2.2.2/tcR/man/vis.rarefaction.Rd | 5 tcR-2.2.2/tcR/man/vis.shared.clonotypes.Rd | 25 - tcR-2.2.2/tcR/man/vis.top.proportions.Rd | 1 tcR-2.2.2/tcR/src/RcppExports.cpp | 55 +- tcR-2.2.2/tcR/vignettes/tcrvignette.Rmd | 2 109 files changed, 921 insertions(+), 770 deletions(-)
Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images.
Contains over 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Parametric models can be fitted to point pattern data using the functions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, inter-point interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods.
A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm(). The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above.
Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()) and variable selection (sdr). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>,
Rolf Turner <r.turner@auckland.ac.nz>
and Ege Rubak <rubak@math.aau.dk>,
with substantial contributions of code by
Kasper Klitgaard Berthelsen;
Ottmar Cronie;
Yongtao Guan;
Ute Hahn;
Abdollah Jalilian;
Marie-Colette van Lieshout;
Greg McSwiggan;
Tuomas Rajala;
Suman Rakshit;
Dominic Schuhmacher;
Rasmus Waagepetersen;
and Hangsheng Wang.
Additional contributions
by M. Adepeju;
C. Anderson;
Q.W. Ang;
J. Astrom;
M. Austenfeld;
S. Azaele;
M. Baddeley;
C. Beale;
M. Bell;
R. Bernhardt;
T. Bendtsen;
A. Bevan;
B. Biggerstaff;
A. Bilgrau;
L. Bischof;
C. Biscio;
R. Bivand;
J.M. Blanco Moreno;
F. Bonneu;
J. Burgos;
S. Byers;
Y.M. Chang;
J.B. Chen;
I. Chernayavsky;
Y.C. Chin;
B. Christensen;
J.-F. Coeurjolly;
K. Colyvas;
R. Constantine;
R. Corria Ainslie;
R. Cotton;
M. de la Cruz;
P. Dalgaard;
M. D'Antuono;
S. Das;
T. Davies;
P.J. Diggle;
P. Donnelly;
I. Dryden;
S. Eglen;
A. El-Gabbas;
B. Fandohan;
O. Flores;
E.D. Ford;
P. Forbes;
S. Frank;
J. Franklin;
N. Funwi-Gabga;
O. Garcia;
A. Gault;
J. Geldmann;
M. Genton;
S. Ghalandarayeshi;
J. Gilbey;
J. Goldstick;
P. Grabarnik;
C. Graf;
U. Hahn;
A. Hardegen;
M.B. Hansen;
M. Hazelton;
J. Heikkinen;
M. Hering;
M. Herrmann;
P. Hewson;
K. Hingee;
K. Hornik;
P. Hunziker;
J. Hywood;
R. Ihaka;
C. Icos;
A. Jammalamadaka;
R. John-Chandran;
D. Johnson;
M. Khanmohammadi;
R. Klaver;
P. Kovesi;
L. Kozmian-Ledward;
M. Kuhn;
J. Laake;
F. Lavancier;
T. Lawrence;
R.A. Lamb;
J. Lee;
G.P. Leser;
A. Li;
H.T. Li;
G. Limitsios;
A. Lister;
B. Madin;
M. Maechler;
J. Marcus;
K. Marchikanti;
R. Mark;
J. Mateu;
P. McCullagh;
U. Mehlig;
F. Mestre;
S. Meyer;
X.C. Mi;
L. De Middeleer;
R.K. Milne;
E. Miranda;
J. Moller;
I. Moncada;
M. Moradi;
V. Morera Pujol;
E. Mudrak;
G.M. Nair;
N. Najari;
N. Nava;
L.S. Nielsen;
F. Nunes;
J.R. Nyengaard;
J. Oehlschlaegel;
T. Onkelinx;
S. O'Riordan;
E. Parilov;
J. Picka;
N. Picard;
M. Porter;
S. Protsiv;
A. Raftery;
S. Rakshit;
B. Ramage;
P. Ramon;
X. Raynaud;
N. Read;
M. Reiter;
I. Renner;
T.O. Richardson;
B.D. Ripley;
E. Rosenbaum;
B. Rowlingson;
J. Rudokas;
J. Rudge;
C. Ryan;
F. Safavimanesh;
A. Sarkka;
C. Schank;
K. Schladitz;
S. Schutte;
B.T. Scott;
O. Semboli;
F. Semecurbe;
V. Shcherbakov;
G.C. Shen;
P. Shi;
H.-J. Ship;
T.L. Silva;
I.-M. Sintorn;
Y. Song;
M. Spiess;
M. Stevenson;
K. Stucki;
M. Sumner;
P. Surovy;
B. Taylor;
T. Thorarinsdottir;
L. Torres;
B. Turlach;
T. Tvedebrink;
K. Ummer;
M. Uppala;
A. van Burgel;
T. Verbeke;
M. Vihtakari;
A. Villers;
F. Vinatier;
S. Voss;
S. Wagner;
H. Wang;
H. Wendrock;
J. Wild;
C. Witthoft;
S. Wong;
M. Woringer;
M.E. Zamboni
and
A. Zeileis.
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat versions 1.56-0 dated 2018-06-15 and 1.56-1 dated 2018-08-01
DESCRIPTION | 10 MD5 | 118 +++++----- NAMESPACE | 6 NEWS | 91 ++++++++ R/Tstat.R | 4 R/as.im.R | 8 R/bugtable.R | 7 R/compileK.R | 6 R/fv.R | 4 R/linim.R | 5 R/logistic.R | 6 R/lpp.R | 108 +++++---- R/pcf.R | 10 R/pointsonlines.R | 19 - R/ppmclass.R | 4 R/quadclass.R | 7 R/sdr.R | 16 - R/sparse3Darray.R | 4 R/summary.quad.R | 9 R/sysdata.rda |binary R/tess.R | 21 + R/window.R | 16 - R/wingeom.R | 84 +++++-- build/vignette.rds |binary inst/doc/Nickname.txt | 2 inst/doc/bugfixes.R |only inst/doc/bugfixes.Rnw |only inst/doc/bugfixes.pdf |only inst/doc/datasets.pdf |binary inst/doc/getstart.pdf | 222 ++++++++----------- inst/doc/packagesizes.txt | 1 inst/doc/replicated.pdf | 469 ++++++++++++++++++++++------------------- inst/doc/shapefiles.pdf |binary inst/doc/updates.R | 31 -- inst/doc/updates.Rnw | 518 ---------------------------------------------- inst/doc/updates.pdf |binary man/affine.tess.Rd | 4 man/as.im.Rd | 24 +- man/clarkevans.test.Rd | 3 man/density.lpp.Rd | 4 man/hopskel.Rd | 10 man/intersect.owin.Rd | 14 - man/pairs.im.Rd | 11 man/panel.contour.Rd | 19 - man/plot.onearrow.Rd | 10 man/plot.textstring.Rd | 10 man/pointsOnLines.Rd | 10 man/quantess.Rd | 8 man/rmhmodel.default.Rd | 2 man/rmhstart.Rd | 8 man/sdr.Rd | 11 man/spatialcdf.Rd | 1 man/yardstick.Rd | 13 - src/spasumsymout.h | 6 tests/testsAtoF.R | 64 +++++ tests/testsGtoK.R | 42 +++ tests/testsLtoM.R | 68 +++++- tests/testsNtoP.R | 36 ++- tests/testsQtoR.R | 50 ++++ tests/testsStoZ.R | 75 +++++- vignettes/bugfixes.Rnw |only vignettes/updates.Rnw | 518 ---------------------------------------------- 62 files changed, 1127 insertions(+), 1700 deletions(-)
Title: Programming with Big Data -- Interface to MPI
Description: An efficient interface to MPI by utilizing S4
classes and methods with a focus on Single Program/Multiple Data
('SPMD')
parallel programming style, which is intended for batch parallel
execution.
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut],
Drew Schmidt [aut],
Pragneshkumar Patel [aut],
Hao Yu [aut],
Christian Heckendorf [ctb] (FreeBSD),
Brian Ripley [ctb] (Windows HPC Pack 2012),
R Core team [ctb] (some functions are modified from the base packages)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdMPI versions 0.3-6 dated 2018-05-14 and 0.3-7 dated 2018-08-01
ChangeLog | 7 + DESCRIPTION | 8 - MD5 | 14 +-- R/spmd_communicator.r | 2 configure | 217 +++++++++++++++++++++++++++++++++++++----------- configure.ac | 176 ++++++++++++++++++++++++++++---------- man/zz_comm_internal.Rd | 1 src/zzz.c | 1 8 files changed, 319 insertions(+), 107 deletions(-)
Title: Multilevel Joint Modelling Multiple Imputation
Description: Similarly to Schafer's package 'pan', 'jomo' is a package for multilevel joint modelling multiple imputation (Carpenter and Kenward, 2013) <doi: 10.1002/9781119942283>.
Novel aspects of 'jomo' are the possibility of handling binary and categorical data through latent normal variables, the option to use cluster-specific covariance matrices and to impute compatibly with the substantive model.
Author: Matteo Quartagno, James Carpenter
Maintainer: Matteo Quartagno <matteo.quartagno@lshtm.ac.uk>
Diff between jomo versions 2.6-2 dated 2018-04-26 and 2.6-3 dated 2018-08-01
DESCRIPTION | 9 - MD5 | 181 +++++++++++++++++---------------- R/jomo.glm.MCMCchain.R | 5 R/jomo.glm.R | 5 R/jomo.glmer.MCMCchain.R | 5 R/jomo.glmer.R | 5 R/jomo1cat.MCMCchain.R | 2 R/jomo1cat.R | 4 R/jomo1con.MCMCchain.R | 8 - R/jomo1con.R | 12 -- R/jomo1mix.MCMCchain.R | 2 R/jomo1mix.R | 4 R/jomo1rancat.MCMCchain.R | 2 R/jomo1rancat.R | 4 R/jomo1rancathr.MCMCchain.R | 12 -- R/jomo1rancathr.R | 18 +-- R/jomo1rancon.MCMCchain.R | 10 - R/jomo1rancon.R | 12 -- R/jomo1ranconhr.MCMCchain.R | 17 +-- R/jomo1ranconhr.R | 27 ++-- R/jomo1ranmix.MCMCchain.R | 2 R/jomo1ranmix.R | 4 R/jomo1ranmixhr.MCMCchain.R | 12 -- R/jomo1ranmixhr.R | 19 +-- R/jomo2com.MCMCchain.R | 14 -- R/jomo2com.R | 4 R/jomo2hr.MCMCchain.R | 8 - R/jomo2hr.R | 15 -- data/ExamScores.RData |only data/JSPmiss.RData |only man/ExamScores.Rd |only man/JSPmiss.Rd |only man/jomo.MCMCchain.Rd | 6 - man/jomo.Rd | 6 - man/jomo.coxph.MCMCchain.Rd | 4 man/jomo.coxph.Rd | 3 man/jomo.glm.MCMCchain.Rd | 8 - man/jomo.glm.Rd | 3 man/jomo.glmer.MCMCchain.Rd | 6 - man/jomo.glmer.Rd | 6 - man/jomo.lm.MCMCchain.Rd | 6 - man/jomo.lm.Rd | 6 - man/jomo.lmer.MCMCchain.Rd | 4 man/jomo.lmer.Rd | 6 - man/jomo.smc.MCMCchain.Rd | 6 - man/jomo.smc.Rd | 6 - man/jomo1.MCMCchain.Rd | 2 man/jomo1.Rd | 2 man/jomo1cat.MCMCchain.Rd | 5 man/jomo1cat.Rd | 5 man/jomo1con.MCMCchain.Rd | 2 man/jomo1con.Rd | 2 man/jomo1mix.MCMCchain.Rd | 2 man/jomo1mix.Rd | 2 man/jomo1ran.MCMCchain.Rd | 4 man/jomo1ran.Rd | 6 - man/jomo1rancat.MCMCchain.Rd | 4 man/jomo1rancat.Rd | 4 man/jomo1rancathr.MCMCchain.Rd | 4 man/jomo1rancathr.Rd | 5 man/jomo1rancon.MCMCchain.Rd | 4 man/jomo1rancon.Rd | 4 man/jomo1ranconhr.MCMCchain.Rd | 4 man/jomo1ranconhr.Rd | 5 man/jomo1ranmix.MCMCchain.Rd | 4 man/jomo1ranmix.Rd | 4 man/jomo1ranmixhr.MCMCchain.Rd | 5 man/jomo1ranmixhr.Rd | 5 man/jomo2.MCMCchain.Rd | 6 - man/jomo2.Rd | 6 - man/jomo2com.MCMCchain.Rd | 6 - man/jomo2com.Rd | 5 man/jomo2hr.MCMCchain.Rd | 6 - man/jomo2hr.Rd | 6 - src/MCMCjomo1glmerbin.c | 10 - src/MCMCjomo1glmerbinhr.c | 10 - src/MCMCjomo2glmerbin.c | 16 +- src/MCMCjomo2glmerbinhr.c | 16 +- src/MCMCjomoglmbin.c | 10 - src/jomo1C.c |only src/jomo1glmerbin.c | 10 - src/jomo1glmerbinhr.c | 10 - src/jomo1lmer.c | 4 src/jomo1lmerhr.c | 4 src/jomo1ranC.c |only src/jomo1ranhrC.c |only src/jomo2comC.c | 85 +++++++++++---- src/jomo2glmerbin.c | 16 +- src/jomo2glmerbinhr.c | 16 +- src/jomo2hrC.c | 224 ++++++++++++++++++++++++++++------------- src/jomo2lmer.c | 4 src/jomo2lmerhr.c | 4 src/jomo_init.c | 14 +- src/jomoglmbin.c | 10 - src/jomolm.c | 4 95 files changed, 561 insertions(+), 523 deletions(-)
Title: Object Oriented Implementation of Probability Models
Description: Implements S4 classes for probability models based on packages 'distr' and
'distrEx'.
Author: Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
R Core Team [ctb, cph] (for source file 'format.perc')
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrMod versions 2.6.1 dated 2016-09-04 and 2.7.0 dated 2018-08-01
DESCRIPTION | 19 - MD5 | 49 +-- NAMESPACE | 10 R/0distrModUtils.R | 127 +++----- R/L2GroupFamilies.R | 2 R/MDEstimator.R | 48 +++ R/ProbFamily.R | 3 R/mleCalc-methods.R | 1 R/qqplot.R | 247 +++++++++++---- R/returnlevelplot.R | 199 +++++++++--- build/vignette.rds |binary inst/NEWS | 34 ++ inst/TOBEDONE | 2 inst/doc/distrMod.R | 2 inst/doc/distrMod.Rnw | 8 inst/doc/distrMod.pdf |binary man/0distrMod-package.Rd | 13 man/MDEstimator.Rd | 36 ++ man/ProbFamily-class.Rd | 4 man/internals-qqplot.Rd | 18 - man/internals.Rd | 37 +- man/qqplot.Rd | 108 +++--- man/returnlevelplot.Rd | 69 +++- tests |only vignettes/distrMod.Rnw | 8 vignettes/distrMod.bib | 744 +++++++++++++++++++++++------------------------ 26 files changed, 1077 insertions(+), 711 deletions(-)
Title: Model-Based Clustering and Classification with the Multivariate
Contaminated Normal Distribution
Description: Fits mixtures of multivariate contaminated normal distributions
(with eigen-decomposed scale matrices) via the expectation conditional-
maximization algorithm under a clustering or classification paradigm.
Author: Antonio Punzo, Angelo Mazza, Paul D. McNicholas
Maintainer: Angelo Mazza <a.mazza@unict.it>
Diff between ContaminatedMixt versions 1.3.2 dated 2018-01-29 and 1.3.3 dated 2018-08-01
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- R/CNmixt.R | 14 ++++++-------- R/CNmixt2.R | 17 ++++++++--------- R/main.R | 6 ++++-- inst |only man/CNmixt.Rd | 2 +- man/ContaminatedMixt-package.Rd | 2 +- man/agree.Rd | 2 +- man/dCN.Rd | 2 +- man/m.step.Rd | 2 +- man/predictg.Rd | 2 +- 12 files changed, 39 insertions(+), 39 deletions(-)
More information about ContaminatedMixt at CRAN
Permanent link
Title: Automatic Codebooks from Survey Metadata Encoded in Attributes
Description: Easily automate the following tasks to describe data frames:
summarise the distributions of scales and items graphically and using descriptive statistics,
compute reliabilities (internal consistencies, retest, multilevel) for psychological scales,
combine this information with metadata (such as item labels and labelled values) that is derived from R attributes.
To do so, the package relies on 'rmarkdown' partials, so you can generate HTML, PDF, and Word documents. Codebooks
are also available as tables (CSV, Excel, etc.).
The metadata and codebooks are also available at your fingertips via RStudio Addins.
Author: Ruben Arslan [aut, cre]
Maintainer: Ruben Arslan <ruben.arslan@gmail.com>
Diff between codebook versions 0.6.2 dated 2018-07-26 and 0.6.3 dated 2018-08-01
DESCRIPTION | 12 MD5 | 64 NAMESPACE | 15 NEWS.md | 22 R/codebook.R | 54 R/correct_attributes.R | 110 R/create_metadata.R |only R/misc.R | 43 R/plot_helpers.R | 8 R/reliability.R | 14 build/vignette.rds |binary inst/_codebook_item.Rmd | 6 inst/_codebook_scale.Rmd | 25 inst/doc/codebook.R | 284 - inst/doc/codebook.Rmd | 24 inst/doc/codebook.html | 5913 +++++++-------------------------- inst/doc/codebook_labelled_manual.R |only inst/doc/codebook_labelled_manual.Rmd |only inst/doc/codebook_labelled_manual.html |only inst/doc/codebook_nested_scale.R |only inst/doc/codebook_nested_scale.Rmd |only inst/doc/codebook_nested_scale.html |only inst/doc/codebook_qualtrics.R |only inst/doc/codebook_qualtrics.Rmd |only inst/doc/codebook_qualtrics.html |only inst/doc/codebook_sav.R |only inst/doc/codebook_sav.Rmd |only inst/doc/codebook_sav.html |only inst/extdata |only man/aggregate_and_document_scale.Rd | 2 man/codebook.Rd | 4 man/has_label.Rd |only man/has_labels.Rd |only man/plot_labelled.Rd | 3 man/reexports.Rd |only man/reverse_labelled_values.Rd |only man/zap_attributes.Rd | 5 man/zap_label.Rd | 4 man/zap_labelled.Rd |only vignettes/codebook.Rmd | 24 vignettes/codebook_labelled_manual.Rmd |only vignettes/codebook_nested_scale.Rmd |only vignettes/codebook_qualtrics.Rmd |only vignettes/codebook_sav.Rmd |only 44 files changed, 1884 insertions(+), 4752 deletions(-)
Title: PCIC Implementation of Climdex Routines
Description: PCIC's implementation of Climdex routines for computation of
extreme climate indices.
Author: David Bronaugh <bronaugh@uvic.ca> for the Pacific Climate Impacts
Consortium
Maintainer: James Hiebert <hiebert@uvic.ca>
Diff between climdex.pcic versions 1.1-6 dated 2015-06-30 and 1.1-9 dated 2018-08-01
CHANGELOG | 3 DESCRIPTION | 13 +-- MD5 | 109 ++++++++++++++-------------- NAMESPACE | 5 - R/climdex.pcic-package.R | 2 R/climdex.r | 44 ++++++++++- man/climdex.cdd.Rd | 14 ++- man/climdex.csdi.Rd | 3 man/climdex.cwd.Rd | 15 ++- man/climdex.dtr.Rd | 3 man/climdex.fd.Rd | 3 man/climdex.get.available.indices.Rd | 3 man/climdex.gsl.Rd | 3 man/climdex.id.Rd | 3 man/climdex.pcic.Rd | 4 - man/climdex.prcptot.Rd | 3 man/climdex.quantile.Rd | 5 - man/climdex.r10mm.Rd | 3 man/climdex.r20mm.Rd | 3 man/climdex.r95ptot.Rd | 3 man/climdex.r99ptot.Rd | 3 man/climdex.rnnmm.Rd | 3 man/climdex.rx1day.Rd | 3 man/climdex.rx5day.Rd | 3 man/climdex.sdii.Rd | 3 man/climdex.su.Rd | 3 man/climdex.tn10p.Rd | 12 ++- man/climdex.tn90p.Rd | 12 ++- man/climdex.tnn.Rd | 3 man/climdex.tnx.Rd | 3 man/climdex.tr.Rd | 3 man/climdex.tx10p.Rd | 12 ++- man/climdex.tx90p.Rd | 12 ++- man/climdex.txn.Rd | 3 man/climdex.txx.Rd | 3 man/climdex.wsdi.Rd | 3 man/climdexInput.Rd | 7 + man/climdexInput.csv.Rd | 4 - man/climdexInput.raw.Rd | 23 ++--- man/ec.1018935.Rd | 5 - man/get.last.monthday.of.year.Rd | 4 - man/get.outofbase.quantiles.Rd | 4 - man/get.series.lengths.at.ends.Rd | 6 + man/growing.season.length.Rd | 6 - man/nday.consec.prec.max.Rd | 4 - man/number.days.op.threshold.Rd | 4 - man/percent.days.op.threshold.Rd | 4 - man/running.mean.Rd |only man/select.blocks.gt.length.Rd | 5 - man/simple.precipitation.intensity.index.Rd | 5 - man/spell.length.max.Rd | 5 - man/threshold.exceedance.duration.index.Rd | 5 - man/total.precip.op.threshold.Rd | 5 - src/climdex.pcic_init.c |only tests/single_date_field_prec.csv |only tests/single_date_field_tmax.csv |only tests/single_date_field_tmin.csv |only tests/test_helper_functions.R |only tests/test_issue_7.R |only 59 files changed, 240 insertions(+), 184 deletions(-)
Title: Interface to 'REDCap'
Description: Access data stored in 'REDCap' databases using the Application
Programming Interface (API). 'REDCap' (Research Electronic Data CAPture;
<https://projectredcap.org>) is
a web application for building and managing online surveys and databases
developed at Vanderbilt University. The API allows users to access data
and project meta data (such as the data dictionary) from the web
programmatically. The 'redcapAPI' package facilitates the process of
accessing data with options to prepare an analysis-ready data set
consistent with the definitions in a database's data dictionary.
Author: Benjamin Nutter [aut, ctb, cre],
Stephen Lane [ctb],
Will Beasley [ctb],
Jeffrey Horner [ctb],
Will Gray [ctb],
Jeremy Stephens [ctb]
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between redcapAPI versions 2.1 dated 2018-05-11 and 2.2 dated 2018-08-01
redcapAPI-2.1/redcapAPI/R/allocationTable_offline.R |only redcapAPI-2.2/redcapAPI/DESCRIPTION | 12 redcapAPI-2.2/redcapAPI/MD5 | 161 + redcapAPI-2.2/redcapAPI/NAMESPACE | 151 - redcapAPI-2.2/redcapAPI/NEWS | 219 +- redcapAPI-2.2/redcapAPI/R/Extraction.R |only redcapAPI-2.2/redcapAPI/R/allocationTable.R | 869 +++++----- redcapAPI-2.2/redcapAPI/R/apiCall.R | 112 - redcapAPI-2.2/redcapAPI/R/checkbox_suffixes.R | 156 - redcapAPI-2.2/redcapAPI/R/cleanseMetaData.R |only redcapAPI-2.2/redcapAPI/R/deleteArms.R |only redcapAPI-2.2/redcapAPI/R/deleteFiles.R | 238 +- redcapAPI-2.2/redcapAPI/R/deprecated_recapProjectInfo.R | 124 - redcapAPI-2.2/redcapAPI/R/exportArms.R | 226 +- redcapAPI-2.2/redcapAPI/R/exportBundle.R | 220 +- redcapAPI-2.2/redcapAPI/R/exportEvents.R | 208 +- redcapAPI-2.2/redcapAPI/R/exportFieldNames.R | 316 +-- redcapAPI-2.2/redcapAPI/R/exportFiles.R | 400 ++-- redcapAPI-2.2/redcapAPI/R/exportInstruments.R | 164 - redcapAPI-2.2/redcapAPI/R/exportMappings.R | 178 +- redcapAPI-2.2/redcapAPI/R/exportMetaData.R | 207 +- redcapAPI-2.2/redcapAPI/R/exportNextRecordName.R | 172 +- redcapAPI-2.2/redcapAPI/R/exportPDF.R | 288 +-- redcapAPI-2.2/redcapAPI/R/exportProjectInformation.R | 160 - redcapAPI-2.2/redcapAPI/R/exportRecords.R | 972 +++++------ redcapAPI-2.2/redcapAPI/R/exportRecords_offline.R | 228 +- redcapAPI-2.2/redcapAPI/R/exportReports.R | 358 ++-- redcapAPI-2.2/redcapAPI/R/exportUsers.R | 360 ++-- redcapAPI-2.2/redcapAPI/R/exportVersion.R | 164 - redcapAPI-2.2/redcapAPI/R/fieldToVar.R | 308 +-- redcapAPI-2.2/redcapAPI/R/genericApiCall.R |only redcapAPI-2.2/redcapAPI/R/importArms.R |only redcapAPI-2.2/redcapAPI/R/importFiles.R | 276 +-- redcapAPI-2.2/redcapAPI/R/importRecords.R | 802 ++++----- redcapAPI-2.2/redcapAPI/R/makeRedcapFactor.R | 215 +- redcapAPI-2.2/redcapAPI/R/massert.R | 172 +- redcapAPI-2.2/redcapAPI/R/parseBranchingLogic.R | 76 redcapAPI-2.2/redcapAPI/R/recodeCheck.R | 182 +- redcapAPI-2.2/redcapAPI/R/redcapAPI-pkg.R | 96 - redcapAPI-2.2/redcapAPI/R/redcapConnection.R | 210 +- redcapAPI-2.2/redcapAPI/R/redcapFactorFlip.R | 96 - redcapAPI-2.2/redcapAPI/R/redcap_error.R | 110 - redcapAPI-2.2/redcapAPI/R/syncUnderscoreCodings.R | 294 +-- redcapAPI-2.2/redcapAPI/R/validateImport.R | 513 +++--- redcapAPI-2.2/redcapAPI/R/validateImport_methods.R | 1008 ++++++------ redcapAPI-2.2/redcapAPI/R/zzz.R | 66 redcapAPI-2.2/redcapAPI/README.md | 49 redcapAPI-2.2/redcapAPI/inst/CITATION | 20 redcapAPI-2.2/redcapAPI/man/Extraction.Rd |only redcapAPI-2.2/redcapAPI/man/allocationTable.Rd | 246 +- redcapAPI-2.2/redcapAPI/man/apiCall.Rd | 106 - redcapAPI-2.2/redcapAPI/man/checkbox_suffixes.Rd | 42 redcapAPI-2.2/redcapAPI/man/cleanseMetaData.Rd |only redcapAPI-2.2/redcapAPI/man/deleteArms.Rd |only redcapAPI-2.2/redcapAPI/man/deleteFiles.Rd | 94 - redcapAPI-2.2/redcapAPI/man/deprecated_redcapProjectInfo.Rd | 116 - redcapAPI-2.2/redcapAPI/man/exportArms.Rd | 162 - redcapAPI-2.2/redcapAPI/man/exportBundle.Rd | 148 - redcapAPI-2.2/redcapAPI/man/exportEvents.Rd | 150 - redcapAPI-2.2/redcapAPI/man/exportFieldNames.Rd | 184 +- redcapAPI-2.2/redcapAPI/man/exportFiles.Rd | 180 +- redcapAPI-2.2/redcapAPI/man/exportInstruments.Rd | 116 - redcapAPI-2.2/redcapAPI/man/exportMappings.Rd | 132 - redcapAPI-2.2/redcapAPI/man/exportMetaData.Rd | 145 - redcapAPI-2.2/redcapAPI/man/exportNextRecordName.Rd | 110 - redcapAPI-2.2/redcapAPI/man/exportPdf.Rd | 166 - redcapAPI-2.2/redcapAPI/man/exportProjectInformation.Rd | 116 - redcapAPI-2.2/redcapAPI/man/exportRecords.Rd | 444 ++--- redcapAPI-2.2/redcapAPI/man/exportReports.Rd | 164 - redcapAPI-2.2/redcapAPI/man/exportUsers.Rd | 186 +- redcapAPI-2.2/redcapAPI/man/exportVersion.Rd | 116 - redcapAPI-2.2/redcapAPI/man/fieldToVar.Rd | 68 redcapAPI-2.2/redcapAPI/man/genericApiCall.Rd |only redcapAPI-2.2/redcapAPI/man/importArms.Rd |only redcapAPI-2.2/redcapAPI/man/importFiles.Rd | 108 - redcapAPI-2.2/redcapAPI/man/importRecords.Rd | 184 +- redcapAPI-2.2/redcapAPI/man/massert.Rd | 82 redcapAPI-2.2/redcapAPI/man/parseBranchingLogic.Rd | 68 redcapAPI-2.2/redcapAPI/man/recodeCheck.Rd | 102 - redcapAPI-2.2/redcapAPI/man/redcapAPI.Rd | 102 - redcapAPI-2.2/redcapAPI/man/redcapConnection.Rd | 176 +- redcapAPI-2.2/redcapAPI/man/redcapFactorFlip.Rd | 54 redcapAPI-2.2/redcapAPI/man/redcap_error.Rd | 116 - redcapAPI-2.2/redcapAPI/man/syncUnderscoreCodings.Rd | 140 - redcapAPI-2.2/redcapAPI/man/validateImport.Rd | 174 +- redcapAPI-2.2/redcapAPI/tests |only 86 files changed, 7862 insertions(+), 7791 deletions(-)
Title: Downloading, Reading and Analysing PNADc Microdata
Description: Provides tools for download, read, and analyse the PNADc
household survey from Brazilian Institute of Geography and Statistics.
The data must be downloaded from the official website <https://www.ibge.gov.br/>.
Further analyses must be made using package 'survey'.
Author: Douglas Braga [aut, cre]
Maintainer: Douglas Braga <douglas.braga@ibge.gov.br>
Diff between PNADcIBGE versions 0.4.1.1 dated 2018-04-11 and 0.4.2 dated 2018-08-01
DESCRIPTION | 7 ++++--- MD5 | 5 +++-- R/get_pnadc.R | 8 +++++--- README.md |only 4 files changed, 12 insertions(+), 8 deletions(-)
Title: New Data Visualisations for SOMs Cluster
Description: Contains parallel coordinate and attribute mapping visualisations for cluster data.
Author: Felipe Carvalho [aut, cre],
Rafael Santos [ctb]
Maintainer: Felipe Carvalho <lipecaso@gmail.com>
Diff between ggsom versions 0.2.0 dated 2018-07-28 and 0.2.1 dated 2018-08-01
ggsom-0.2.0/ggsom/vignettes/ggsom_cache/html/unnamed-chunk-1_175f5932d1b789fada6788f1740fb98d.RData |only ggsom-0.2.0/ggsom/vignettes/ggsom_cache/html/unnamed-chunk-1_175f5932d1b789fada6788f1740fb98d.rdb |only ggsom-0.2.0/ggsom/vignettes/ggsom_cache/html/unnamed-chunk-1_175f5932d1b789fada6788f1740fb98d.rdx |only ggsom-0.2.1/ggsom/DESCRIPTION | 10 +- ggsom-0.2.1/ggsom/MD5 | 32 ++++---- ggsom-0.2.1/ggsom/R/aes_som.R | 9 +- ggsom-0.2.1/ggsom/R/ggsom_rect.R | 3 ggsom-0.2.1/ggsom/R/ggsom_ribbon.R | 7 - ggsom-0.2.1/ggsom/R/utils.R | 2 ggsom-0.2.1/ggsom/build/vignette.rds |binary ggsom-0.2.1/ggsom/inst/doc/ggsom.R | 17 ++-- ggsom-0.2.1/ggsom/inst/doc/ggsom.Rmd | 21 ++--- ggsom-0.2.1/ggsom/inst/doc/ggsom.html | 38 ++++------ ggsom-0.2.1/ggsom/man/aes_som.Rd | 2 ggsom-0.2.1/ggsom/man/ggsom_rect.Rd | 3 ggsom-0.2.1/ggsom/man/ggsom_ribbon.Rd | 3 ggsom-0.2.1/ggsom/vignettes/ggsom.Rmd | 21 ++--- ggsom-0.2.1/ggsom/vignettes/ggsom_cache/html/unnamed-chunk-1_dab21dc180e6b8c9f484f3758c8aa5b6.RData |only ggsom-0.2.1/ggsom/vignettes/ggsom_cache/html/unnamed-chunk-1_dab21dc180e6b8c9f484f3758c8aa5b6.rdb |only ggsom-0.2.1/ggsom/vignettes/ggsom_cache/html/unnamed-chunk-1_dab21dc180e6b8c9f484f3758c8aa5b6.rdx |only 20 files changed, 81 insertions(+), 87 deletions(-)
Title: Quickly Create Elegant Regression Results Tables and Plots when
Modelling
Description: Generate regression results tables and plots in final
format for publication. Explore models and export directly to PDF
and 'Word' using 'RMarkdown'.
Author: Ewen Harrison, Tom Drake, Riinu Ots
Maintainer: Ewen Harrison <ewen.harrison@ed.ac.uk>
Diff between finalfit versions 0.8.3 dated 2018-07-25 and 0.8.4 dated 2018-08-01
finalfit-0.8.3/finalfit/R/ff_mcar.R |only finalfit-0.8.3/finalfit/R/ff_missing.R |only finalfit-0.8.3/finalfit/man/ff_mcar.Rd |only finalfit-0.8.3/finalfit/man/ff_missing.Rd |only finalfit-0.8.4/finalfit/DESCRIPTION | 6 finalfit-0.8.4/finalfit/MD5 | 34 +- finalfit-0.8.4/finalfit/NAMESPACE | 6 finalfit-0.8.4/finalfit/R/ff_glimpse.R | 5 finalfit-0.8.4/finalfit/R/finalfit.R | 6 finalfit-0.8.4/finalfit/R/finalfit_internal_functions.R | 267 ++++++++-------- finalfit-0.8.4/finalfit/R/finalfit_package.R | 10 finalfit-0.8.4/finalfit/R/missing_compare.R |only finalfit-0.8.4/finalfit/R/missing_pattern.R |only finalfit-0.8.4/finalfit/R/missing_plot.R | 6 finalfit-0.8.4/finalfit/inst/doc/finalfit_basics.R | 2 finalfit-0.8.4/finalfit/inst/doc/finalfit_basics.Rmd | 2 finalfit-0.8.4/finalfit/inst/doc/finalfit_basics.html | 6 finalfit-0.8.4/finalfit/man/finalfit-package.Rd | 12 finalfit-0.8.4/finalfit/man/missing_compare.Rd |only finalfit-0.8.4/finalfit/man/missing_pattern.Rd |only finalfit-0.8.4/finalfit/man/skew.Rd | 2 finalfit-0.8.4/finalfit/vignettes/finalfit_basics.Rmd | 2 22 files changed, 203 insertions(+), 163 deletions(-)
Title: Analysis of Doubly-Truncated Data
Description: Likelihood-based inference methods with doubly-truncated data are developed under various models.
Parametric models from the special exponential family (SEF) are based on
Hu and Emura (2015) <doi:10.1007/s00180-015-0564-z> and
Emura, Hu and Konno (2017) <doi:10.1007/s00362-015-0730-y>.
Author: Takeshi Emura, Hu Ya-Hsuan
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between double.truncation versions 1.0 dated 2018-07-22 and 1.1 dated 2018-08-01
double.truncation-1.0/double.truncation/build |only double.truncation-1.1/double.truncation/DESCRIPTION | 8 ++-- double.truncation-1.1/double.truncation/MD5 | 17 ++++------ double.truncation-1.1/double.truncation/R/PMLE.SEF3.free.R | 11 ++---- double.truncation-1.1/double.truncation/R/PMLE.SEF3.negative.R | 11 ++---- double.truncation-1.1/double.truncation/R/PMLE.SEF3.positive.R | 11 ++---- double.truncation-1.1/double.truncation/man/PMLE.SEF3.free.Rd | 8 ++++ double.truncation-1.1/double.truncation/man/PMLE.SEF3.negative.Rd | 8 ++++ double.truncation-1.1/double.truncation/man/PMLE.SEF3.positive.Rd | 8 ++++ double.truncation-1.1/double.truncation/man/double.truncation-package.Rd | 12 ++++--- 10 files changed, 55 insertions(+), 39 deletions(-)
More information about double.truncation at CRAN
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Title: Age-Structured Population Dynamics Model
Description: Implements discrete time deterministic and stochastic age-structured population dynamics models described in Erguler and others (2016) <doi:10.1371/journal.pone.0149282> and Erguler and others (2017) <doi:10.1371/journal.pone.0174293>.
Author: Kamil Erguler [aut, cre]
Maintainer: Kamil Erguler <k.erguler@cyi.ac.cy>
Diff between albopictus versions 0.3 dated 2018-06-25 and 0.4 dated 2018-08-01
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NAMESPACE | 2 ++ R/spop.R | 18 ++++++++++++++++++ man/gamma_dist_prob.Rd |only man/nbinom_dist_prob.Rd |only 6 files changed, 29 insertions(+), 7 deletions(-)
Title: All-Resolution Inference
Description: It performs All-Resolutions Inference (ARI) on functional Magnetic Resonance Image (fMRI) data. As a main feature,
it estimates lower bounds for the proportion of active voxels in a set of clusters as, for example, given by a cluster-wise analysis.
The method is described in Rosenblatt, Finos, Weeda, Solari, Goeman (2018) <doi:10.1016/j.neuroimage.2018.07.060>.
Author: Livio Finos, Jelle Goeman, Wouter Weeda, Jonathan Rosenblatt, Aldo Solari
Maintainer: Livio Finos <livio.finos@unipd.it>
Diff between ARIbrain versions 0.1 dated 2018-07-31 and 0.2 dated 2018-08-01
DESCRIPTION | 6 MD5 | 10 - build/vignette.rds |binary inst/doc/ARIbrain_example.Rmd | 270 ++++++++++++++++++++--------------------- inst/doc/ARIbrain_example.html | 4 vignettes/ARIbrain_example.Rmd | 270 ++++++++++++++++++++--------------------- 6 files changed, 280 insertions(+), 280 deletions(-)
Title: Estimation Methods for Causal Inference Based on Inverse
Probability Weighting
Description: Various estimation methods for causal inference based on inverse probability weighting. Specifically, the package includes methods for estimating average treatment effects as well as direct and indirect effects in causal mediation analysis. The models refer to the studies of Frölich (2007) <doi:10.1016/j.jeconom.2006.06.004>, Huber (2012) <doi:10.3102/1076998611411917>, Huber (2014) <doi:10.1080/07474938.2013.806197>, Huber (2014) <doi:10.1002/jae.2341>, and Frölich and Huber (2017) <doi:10.1111/rssb.12232>.
Author: Hugo Bodory and Martin Huber
Maintainer: Hugo Bodory <hugo.bodory@unifr.ch>
Diff between causalweight versions 0.1.0 dated 2018-02-23 and 0.1.1 dated 2018-08-01
causalweight-0.1.0/causalweight/inst/doc/causalweightDoc.R |only causalweight-0.1.0/causalweight/inst/doc/causalweightDoc.Rnw |only causalweight-0.1.0/causalweight/inst/doc/causalweightDoc.pdf |only causalweight-0.1.0/causalweight/vignettes/causalweightDoc-concordance.tex |only causalweight-0.1.0/causalweight/vignettes/causalweightDoc.Rnw |only causalweight-0.1.0/causalweight/vignettes/research_title_style.bib |only causalweight-0.1.1/causalweight/DESCRIPTION | 13 causalweight-0.1.1/causalweight/MD5 | 37 - causalweight-0.1.1/causalweight/NAMESPACE | 3 causalweight-0.1.1/causalweight/R/functions.R | 290 ++++++++-- causalweight-0.1.1/causalweight/R/lateweight.R | 5 causalweight-0.1.1/causalweight/R/medlateweight.R | 5 causalweight-0.1.1/causalweight/R/medweight.R | 5 causalweight-0.1.1/causalweight/R/medweightcont.R |only causalweight-0.1.1/causalweight/R/treatweight.R | 7 causalweight-0.1.1/causalweight/build/vignette.rds |binary causalweight-0.1.1/causalweight/inst/doc/bodory-huber.R |only causalweight-0.1.1/causalweight/inst/doc/bodory-huber.Rnw |only causalweight-0.1.1/causalweight/inst/doc/bodory-huber.pdf |only causalweight-0.1.1/causalweight/man/lateweight.Rd | 4 causalweight-0.1.1/causalweight/man/medlateweight.Rd | 5 causalweight-0.1.1/causalweight/man/medweight.Rd | 4 causalweight-0.1.1/causalweight/man/medweightcont.Rd |only causalweight-0.1.1/causalweight/man/treatweight.Rd | 9 causalweight-0.1.1/causalweight/vignettes/bodory-huber.Rnw |only causalweight-0.1.1/causalweight/vignettes/bodory-huber.bib |only 26 files changed, 292 insertions(+), 95 deletions(-)
Title: Necessary Condition Analysis
Description: Performs a Necessary Condition Analysis (NCA). (Dul, J. 2016. Necessary Condition Analysis (NCA). ''Logic and Methodology of 'Necessary but not Sufficient' causality." Organizational Research Methods 19(1), 10-52,
<http://journals.sagepub.com/doi/abs/10.1177/1094428115584005>).
NCA identifies necessary (but not sufficient) conditions in datasets, where x causes (e.g. precedes) y. Instead of drawing a regression line ''through the middle of the data'' in an xy-plot, NCA draws the ceiling line. The ceiling line y = f(x) separates the area with observations from the area without observations.
(Nearly) all observations are below the ceiling line: y <= f(x). The empty zone is in the upper left hand corner of the xy-plot (with the convention that the x-axis is ''horizontal'' and the y-axis is ''vertical'' and that values increase ''upwards'' and ''to the right''). The ceiling line is a (piecewise) linear non-decreasing line: a linear step function or a straight line. It indicates which level of x (e.g. an effort or input) is necessary but not sufficient for a (desired) level of y (e.g. good performance or output). A quick start guide for using this package can be found here: <http://repub.eur.nl/pub/78323/> or <https://ssrn.com/abstract=2624981>.
Author: Jan Dul <jdul@rsm.nl>
Maintainer: Govert Buijs <buijs@rsm.nl>
Diff between NCA versions 2.0 dated 2016-05-18 and 3.0 dated 2018-08-01
DESCRIPTION | 18 ++--- MD5 | 82 +++++++++++++--------- NAMESPACE | 15 ++-- R/nca.R | 125 +++++++++++++++++----------------- R/nca_output.R | 24 ++++-- R/nca_plots.R | 76 +++++++++++++++++++-- R/nca_summary.R | 73 ++++++++++---------- R/nca_tests.R |only R/onAttach.R | 2 R/p_bottleneck.R | 44 +++++++++--- R/p_bottleneck_table.R | 2 R/p_ceiling.R | 36 ++++++++-- R/p_confidence.R |only R/p_constants.R | 31 ++++++-- R/p_fit.R |only R/p_graphics.R | 8 +- R/p_loop_data.R | 12 +-- R/p_nca_c_lp.R |only R/p_nca_ce_cm.R |only R/p_nca_ce_cm_conf.R |only R/p_nca_ce_fdh.R | 23 +++--- R/p_nca_ce_fdhi.R |only R/p_nca_ce_lfdh.R |only R/p_nca_ce_vrs.R | 11 +-- R/p_nca_cols.R | 8 +- R/p_nca_cr_cm.R |only R/p_nca_cr_cm_conf.R |only R/p_nca_cr_fdh.R | 17 +--- R/p_nca_cr_fdhi.R |only R/p_nca_cr_vrs.R | 21 +---- R/p_nca_ct_fdh.R |only R/p_nca_lh.R | 10 +- R/p_nca_ols.R | 10 +- R/p_nca_qr.R | 18 +++-- R/p_nca_sfa.R | 8 +- R/p_peers.R | 48 ++++++++++++- R/p_utils.R | 54 +++++++++++---- R/p_validate.R | 3 man/NCA-package.Rd | 2 man/ceilings.Rd | 31 +++----- man/line.colors.Rd | 22 +++--- man/line.types.Rd | 20 ++--- man/line.width.Rd | 4 - man/nca.Rd | 44 ++++++------ man/nca.example.Rd | 20 ++--- man/nca_analysis.Rd | 176 +++++++++++++++++++++++++++---------------------- man/nca_output.Rd | 69 ++++++++++--------- man/point.type.Rd | 4 - 48 files changed, 719 insertions(+), 452 deletions(-)
Title: Tools for Parsing and Generating XML Within R and S-Plus
Description: Many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. Also offers access to an
'XPath' "interpreter".
Author: Duncan Temple Lang and the CRAN Team
Maintainer: ORPHANED
Diff between XML versions 3.98-1.12 dated 2018-07-15 and 3.98-1.13 dated 2018-08-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/saveXML.R | 3 +++ 3 files changed, 8 insertions(+), 5 deletions(-)
Title: A Set of Tools that Enhance Reproducibility Beyond Package
Management
Description: Collection of high-level, robust, machine- and OS-independent tools
for making deeply reproducible and reusable content in R.
This includes light weight package management (similar to 'packrat' and
'checkpoint', but more flexible, lightweight and simpler than both), tools
for caching, downloading and verifying or writing checksums, post-processing
of common spatial datasets, and accessing GitHub repositories.
Some features are still under active development.
Author: Eliot J B McIntire [aut, cre],
Alex M Chubaty [aut],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between reproducible versions 0.2.1 dated 2018-07-07 and 0.2.2 dated 2018-08-01
DESCRIPTION | 24 MD5 | 98 +- NAMESPACE | 10 NEWS.md | 38 R/cache-helpers.R | 210 +++- R/cache-tools.R | 130 +- R/cache.R | 1148 ++++++++++++++---------- R/consistentPaths.R | 2 R/download.R | 87 + R/helpers.R | 34 R/packages.R | 10 R/postProcess.R | 89 + R/preProcess.R | 71 + R/prepInputs.R | 134 ++ R/robustDigest.R | 21 R/zzz.R | 18 inst/doc/Intro-to-Cache.html | 1565 ++++++++++++++++----------------- inst/examples/example_assessDataType.R |only man/Checksums.Rd | 4 man/Path-class.Rd | 4 man/addChangedAttr.Rd |only man/addTagsToOutput.Rd | 5 man/assessDataType.Rd |only man/cache.Rd | 49 - man/cacheHelper.Rd | 2 man/copyFile.Rd | 5 man/dlGoogle.Rd | 4 man/downloadFile.Rd | 9 man/extractFromArchive.Rd | 10 man/fixErrors.SpatialPolygons.Rd | 4 man/installPackages.Rd | 7 man/installVersions.Rd | 5 man/maskInputs.Rd | 4 man/objSize.Rd | 3 man/package_dependenciesMem.Rd | 6 man/postProcess.Rd | 12 man/preProcess.Rd | 19 man/prepInputs.Rd | 15 man/prepareFileBackedRaster.Rd | 4 man/projectInputs.Rd | 4 man/reproducible-deprecated.Rd | 10 man/robustDigest.Rd | 22 man/viewCache.Rd | 17 man/writeFuture.Rd |only man/writeOutputs.Rd | 6 tests/testthat/helper-allEqual.R | 99 ++ tests/testthat/test-cache.R | 342 +++---- tests/testthat/test-copy.R | 29 tests/testthat/test-examples.R | 4 tests/testthat/test-git.R | 22 tests/testthat/test-packages.R | 200 ++-- tests/testthat/test-prepInputs.R | 815 ++++++++++------- 52 files changed, 3239 insertions(+), 2191 deletions(-)
Title: The Hyperdirichlet Distribution, Mark 2
Description: A suite of routines for the hyperdirichlet distribution; supersedes the 'hyperdirichlet' package for most purposes.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between hyper2 versions 1.0-1 dated 2017-07-08 and 1.0-4 dated 2018-08-01
hyper2-1.0-1/hyper2/man/lhyper2.Rd |only hyper2-1.0-4/hyper2/DESCRIPTION | 16 +- hyper2-1.0-4/hyper2/MD5 | 72 ++++++++---- hyper2-1.0-4/hyper2/NAMESPACE | 1 hyper2-1.0-4/hyper2/R/hyper2.R | 139 +++++++++++++++++++----- hyper2-1.0-4/hyper2/build/vignette.rds |binary hyper2-1.0-4/hyper2/data/NBA.rda |only hyper2-1.0-4/hyper2/data/chess.rda |binary hyper2-1.0-4/hyper2/data/counterstrike.rda |only hyper2-1.0-4/hyper2/data/euro.rda |only hyper2-1.0-4/hyper2/data/formula1.rda |only hyper2-1.0-4/hyper2/data/masterchef.rda |binary hyper2-1.0-4/hyper2/data/oneill.rda |only hyper2-1.0-4/hyper2/data/rowing.rda |binary hyper2-1.0-4/hyper2/data/super_rugby.rda |binary hyper2-1.0-4/hyper2/data/tennis.rda |only hyper2-1.0-4/hyper2/inst/F1_allyears.R |only hyper2-1.0-4/hyper2/inst/basketball.R |only hyper2-1.0-4/hyper2/inst/counterstrike.R |only hyper2-1.0-4/hyper2/inst/counterstrike_random.R |only hyper2-1.0-4/hyper2/inst/doc/hyper2.R | 2 hyper2-1.0-4/hyper2/inst/doc/hyper2.Rnw | 4 hyper2-1.0-4/hyper2/inst/doc/hyper2.pdf |binary hyper2-1.0-4/hyper2/inst/eurovision.R |only hyper2-1.0-4/hyper2/inst/formula1.R |only hyper2-1.0-4/hyper2/inst/formula1_2014.txt |only hyper2-1.0-4/hyper2/inst/formula1_2015.txt |only hyper2-1.0-4/hyper2/inst/formula1_2016.txt |only hyper2-1.0-4/hyper2/inst/formula1_2017.txt |only hyper2-1.0-4/hyper2/inst/oneill.R |only hyper2-1.0-4/hyper2/inst/rowing_analysis.R | 1 hyper2-1.0-4/hyper2/inst/tennis.R |only hyper2-1.0-4/hyper2/man/Extract.Rd | 33 +++-- hyper2-1.0-4/hyper2/man/NBA.Rd |only hyper2-1.0-4/hyper2/man/Ops.hyper2.Rd | 39 ++++++ hyper2-1.0-4/hyper2/man/change_pnames.Rd |only hyper2-1.0-4/hyper2/man/counterstrike.Rd |only hyper2-1.0-4/hyper2/man/dirichlet.Rd |only hyper2-1.0-4/hyper2/man/euro.Rd |only hyper2-1.0-4/hyper2/man/fillup.Rd | 5 hyper2-1.0-4/hyper2/man/formula1.Rd |only hyper2-1.0-4/hyper2/man/ggol.Rd | 7 - hyper2-1.0-4/hyper2/man/gradient.Rd | 2 hyper2-1.0-4/hyper2/man/hyper2.Rd | 5 hyper2-1.0-4/hyper2/man/icons.Rd |only hyper2-1.0-4/hyper2/man/loglik.Rd |only hyper2-1.0-4/hyper2/man/maxp.Rd | 34 ++++- hyper2-1.0-4/hyper2/man/rugby.Rd | 6 - hyper2-1.0-4/hyper2/man/tennis.Rd |only hyper2-1.0-4/hyper2/vignettes/hyper2.Rnw | 4 hyper2-1.0-4/hyper2/vignettes/hyper2.bib | 2 51 files changed, 272 insertions(+), 100 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-19 0.3.4
2014-02-24 0.3.1
2014-01-08 0.3
2013-06-10 0.2
2013-06-05 0.1
Title: Cox Model with Interval-Censored Starting Time of a Covariate
Description: Calibration and risk-set calibration methods for fitting Cox proportional hazard model when a binary covariate is measured intermittently. Methods include functions to fit calibration models from interval-censored data and modified partial likelihood for the proportional hazard model, Nevo et al. (2018+) <arXiv:1801.01529>.
Author: Daniel Nevo
Maintainer: Daniel Nevo <danielnevo@gmail.com>
Diff between ICcalib versions 1.0.7 dated 2018-01-19 and 1.0.8 dated 2018-08-01
DESCRIPTION | 8 - MD5 | 10 +- R/CalcNpmleRSP.R | 9 +- R/FitCalibCoxRS.R | 156 +++++++++++++++++++------------------ R/FitCalibCoxRSInts.R | 207 +++++++++++++++++++++++++------------------------- R/FitCalibWeibullRS.R | 145 ++++++++++++++++++----------------- 6 files changed, 275 insertions(+), 260 deletions(-)
Title: Import and Export CSV Data with a YAML Metadata Header
Description: Support for import from and export to the CSVY file format. CSVY is a file format that combines the simplicity of CSV (comma-separated values) with the metadata of other plain text and binary formats (JSON, XML, Stata, etc.) by placing a YAML header on top of a regular CSV.
Author: Thomas J. Leeper [aut, cre] (<https://orcid.org/0000-0003-4097-6326>),
Alexey N. Shiklomanov [aut] (<https://orcid.org/0000-0003-4022-5979>),
Jonathan Carroll [aut] (<https://orcid.org/0000-0002-1404-5264>)
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between csvy versions 0.1.3 dated 2016-07-28 and 0.3.0 dated 2018-08-01
csvy-0.1.3/csvy/NEWS |only csvy-0.1.3/csvy/inst/examples/example.csvy |only csvy-0.1.3/csvy/inst/examples/example3.csvy |only csvy-0.1.3/csvy/inst/examples/readme.csvy |only csvy-0.1.3/csvy/tests/testthat/test_csvy.R |only csvy-0.3.0/csvy/DESCRIPTION | 36 +- csvy-0.3.0/csvy/MD5 | 38 +- csvy-0.3.0/csvy/NAMESPACE | 10 csvy-0.3.0/csvy/NEWS.md |only csvy-0.3.0/csvy/R/colclass_dict.R |only csvy-0.3.0/csvy/R/detect_metadata.R |only csvy-0.3.0/csvy/R/get_yaml_header.R |only csvy-0.3.0/csvy/R/read_csvy.R | 287 +++++++++++++------ csvy-0.3.0/csvy/R/read_metadata.R |only csvy-0.3.0/csvy/R/write_csvy.R | 122 ++++++-- csvy-0.3.0/csvy/R/write_metadata.R |only csvy-0.3.0/csvy/README.md | 94 +++--- csvy-0.3.0/csvy/inst/examples/example1.csvy |only csvy-0.3.0/csvy/inst/examples/example2.csvy | 82 ++--- csvy-0.3.0/csvy/man/colclass_dict.Rd |only csvy-0.3.0/csvy/man/csvy.Rd | 2 csvy-0.3.0/csvy/man/get_yaml_header.Rd |only csvy-0.3.0/csvy/man/read_csvy.Rd | 17 - csvy-0.3.0/csvy/man/read_metadata.Rd |only csvy-0.3.0/csvy/man/write_csvy.Rd | 18 - csvy-0.3.0/csvy/man/write_metadata.Rd |only csvy-0.3.0/csvy/tests/testthat/test-metadata.R |only csvy-0.3.0/csvy/tests/testthat/test-read_csvy.R |only csvy-0.3.0/csvy/tests/testthat/test-write_csvy.R |only csvy-0.3.0/csvy/tests/testthat/test-write_metadata.R |only 30 files changed, 470 insertions(+), 236 deletions(-)